Citrus Sinensis ID: 002878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LME2 | 871 | Synaptonemal complex prot | yes | no | 0.994 | 0.995 | 0.549 | 0.0 | |
| P61430 | 856 | Synaptonemal complex prot | no | no | 0.978 | 0.996 | 0.538 | 0.0 |
| >sp|Q9LME2|SYCP1_ARATH Synaptonemal complex protein 1 OS=Arabidopsis thaliana GN=ZYP1A PE=2 SV=1 | Back alignment and function desciption |
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Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/876 (54%), Positives = 679/876 (77%), Gaps = 9/876 (1%)
Query: 1 MQKLGFPSVKSLDQFKSLSRSAKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQASVKT 60
MQKLGFP++KSLD+ +SLS SA +SFS+R DS++SGSF+NLKLTAEKLVK+QA+++T
Sbjct: 1 MQKLGFPAMKSLDKPRSLSGSANMYSFSNRKPPDSVSSGSFSNLKLTAEKLVKDQAAMRT 60
Query: 61 DLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120
DLE+AN KLKKSMEHV LEEKLQNA NENAKL+V++KEDEKLW+GLESKFSSTKTL DQ
Sbjct: 61 DLELANCKLKKSMEHVYALEEKLQNAFNENAKLRVRKKEDEKLWRGLESKFSSTKTLCDQ 120
Query: 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180
LTETLQHLASQVQDAEK+K FFE K S+S A+D QQM +SL+L +A+E IT R+KE
Sbjct: 121 LTETLQHLASQVQDAEKDKGFFETKFSTSSEAIDSLNQQMRDMSLRLDAAKEEITSRDKE 180
Query: 181 LEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHID 240
LE+LK+E+++++ Y+ E C T++L++K DA+I KLE + A+ +L E+LNS++E++H++
Sbjct: 181 LEELKLEKQQKEMFYQTERCGTASLIEKKDAVITKLEASAAERKLNIENLNSQLEKVHLE 240
Query: 241 LQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300
L +KEDE+K L+ +E LEKEK+ +Q+S D+ +KLV+S +E+K L+ V A+L +L
Sbjct: 241 LTTKEDEVKDLVSIQEKLEKEKTSVQLSADNCFEKLVSSEQEVKKLDELVQYLVAELTEL 300
Query: 301 DKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLV 360
DK++LTF EKF +L+ Y++ +Q +RDL+ +AQ +D L + F +A+ K+AL+
Sbjct: 301 DKKNLTFKEKFDKLSGLYDTHIMLLQKDRDLALDRAQRSFDNLQGELFRVAATKEALESA 360
Query: 361 NQELNSKIIKLQKTQESVKAQCLEECRLA-GEKISRLESEAEALISKKIETELLVSKLEK 419
ELN KI++LQ +ES+ +Q L R + + I +LESEA+ L+SK + E +S+L++
Sbjct: 361 GNELNEKIVELQNDKESLISQ-LSGLRCSTSQTIDKLESEAKGLVSKHADAESAISQLKE 419
Query: 420 EIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEM 479
E+++LLE++++ E+K Q+ LK+SSLEME+KE EK A+ Q++ EE+ L++E E ++
Sbjct: 420 EMETLLESVKTSEDKKQELSLKLSSLEMESKEKCEKLQADAQRQVEELETLQKESESHQL 479
Query: 480 LVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDL 539
D + K+ QLQ ++ EK ++LQ N+ EK+L QI +++ L AE++L+EAKKQYDL
Sbjct: 480 QADLLAKEVNQLQTVIEEKGHVILQCNENEKQLNQQIIKDKELLATAETKLAEAKKQYDL 539
Query: 540 MLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKCDQK 599
MLESKQLELSRHLKE+SQRNDQ IN+IRRKY+VEK EI+N EK+K +K I ++ K D++
Sbjct: 540 MLESKQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFDKE 599
Query: 600 LAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKT 659
L++CKEE+K+QL IQEEH+++++S+++E++ KE+NLKA++ EL+ +++QAENEL+E+
Sbjct: 600 LSDCKEESKRQLLTIQEEHSSLILSLREEHESKELNLKAKYDQELRQSQIQAENELKERI 659
Query: 660 TKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEV 719
T LKSEH+ Q+KA +CQ+ED+C+KL EEL LQ+ KE+RQRAL+QLQWKVM + P E+QEV
Sbjct: 660 TALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRKKEERQRALVQLQWKVMSDNPPEEQEV 719
Query: 720 NSKQAYSISSSKMRDLGVGKRSKRAFARAENEE-KDPPFLNEAQTPVSQLLKKVENVNTG 778
NS + YSI SK LG KRS+ R++N+ +D PF+ +TPVS++LKK +NVN G
Sbjct: 720 NSNKNYSI--SKDSRLGGSKRSEHIRVRSDNDNVQDSPFVKAKETPVSKILKKAQNVNAG 777
Query: 779 SMISI--PKHHKKVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGKRKKMNTTQAKTPRS 836
S++SI PKHH KVTH EYEVET+NGR +TKRRKT++T MFE+P +R++ T TP+S
Sbjct: 778 SVLSIPNPKHHSKVTHREYEVETNNGR-VTKRRKTRNTTMFEEP-QRRRTRATPKLTPQS 835
Query: 837 VAKGATGGANPHPSNIGDLFSEGSLNPYADDPYAFD 872
+AKG ++ +NIGDLFSEGSLNPYADDPYAFD
Sbjct: 836 IAKGTGMTSHARSANIGDLFSEGSLNPYADDPYAFD 871
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Required for chromosome synapsis and normal fidelity of crossing over. Arabidopsis thaliana (taxid: 3702) |
| >sp|P61430|SYCP2_ARATH Synaptonemal complex protein 2 OS=Arabidopsis thaliana GN=ZYP1B PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | ||||||
| 255545714 | 868 | Ribosome-binding protein, putative [Rici | 0.990 | 0.995 | 0.680 | 0.0 | |
| 224066949 | 874 | predicted protein [Populus trichocarpa] | 0.998 | 0.996 | 0.688 | 0.0 | |
| 302141955 | 876 | unnamed protein product [Vitis vinifera] | 1.0 | 0.995 | 0.663 | 0.0 | |
| 359492851 | 868 | PREDICTED: synaptonemal complex protein | 0.990 | 0.995 | 0.657 | 0.0 | |
| 356550779 | 866 | PREDICTED: synaptonemal complex protein | 0.988 | 0.995 | 0.625 | 0.0 | |
| 356552884 | 866 | PREDICTED: synaptonemal complex protein | 0.989 | 0.996 | 0.626 | 0.0 | |
| 449508027 | 869 | PREDICTED: LOW QUALITY PROTEIN: synapton | 0.989 | 0.993 | 0.597 | 0.0 | |
| 449436866 | 869 | PREDICTED: synaptonemal complex protein | 0.989 | 0.993 | 0.597 | 0.0 | |
| 357489627 | 999 | Synaptonemal complex protein [Medicago t | 0.986 | 0.860 | 0.528 | 0.0 | |
| 79349253 | 871 | synaptonemal complex protein 1 [Arabidop | 0.994 | 0.995 | 0.549 | 0.0 |
| >gi|255545714|ref|XP_002513917.1| Ribosome-binding protein, putative [Ricinus communis] gi|223547003|gb|EEF48500.1| Ribosome-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1158 bits (2996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/876 (68%), Positives = 720/876 (82%), Gaps = 12/876 (1%)
Query: 1 MQKLGFPSVKSLDQFKSLSRS----AKSFSFSSRPSTDSLTSGSFANLKLTAEKLVKEQA 56
MQKLGFPS+KS DQ+KSL+ S AK+ SSRP DS++ GSF NLKLTAEKL+KEQA
Sbjct: 1 MQKLGFPSLKSFDQYKSLTGSVPGSAKNLPLSSRPFPDSISHGSFTNLKLTAEKLIKEQA 60
Query: 57 SVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKT 116
SVKTDLE+ANSKLKKS EH+ LEEKLQNA NENAKLKV+Q EDEKLWKGLESKF STKT
Sbjct: 61 SVKTDLEIANSKLKKSTEHITALEEKLQNAFNENAKLKVRQMEDEKLWKGLESKFCSTKT 120
Query: 117 LSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITK 176
L DQLTETLQHLA QVQDAEK+K FFE K+S S NA+D QQ+++LSLKLGSAE +
Sbjct: 121 LCDQLTETLQHLACQVQDAEKDKAFFEIKLSESSNAIDSLNQQLNNLSLKLGSAEGTVRT 180
Query: 177 REKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEE 236
REKELEDLKIE+EE++K+Y +E CRT+NL+++ DAM+KK E T+A NRL+TESLNSK++E
Sbjct: 181 REKELEDLKIEKEEKNKIYMEEQCRTANLIEEKDAMLKKFEATLAANRLDTESLNSKLDE 240
Query: 237 MHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQ 296
MH +L KED IK LM T+E LEKEKSDLQ S ++F KL S++EIK+LEGFVH+ AAQ
Sbjct: 241 MHHELGIKEDNIKCLMTTQEKLEKEKSDLQFSSNNFADKLAMSLQEIKDLEGFVHILAAQ 300
Query: 297 LVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDA 356
+ +LDKQ+L F +KF QLNS ++CF+ +Q+ERDL ++ AQ +++QL+DKF +ASEKDA
Sbjct: 301 MAELDKQNLVFNDKFDQLNSLCDTCFKLIQLERDLIAKHAQKKFNQLHDKFLCVASEKDA 360
Query: 357 LQLVNQELNSKIIKLQKTQESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSK 416
LQLVNQELN KII+LQK Q+S++ Q E CRLA ++I +LESEAE L+SKK ETE+LVSK
Sbjct: 361 LQLVNQELNDKIIELQKAQDSIREQLSEGCRLAADRIQKLESEAEMLLSKKNETEILVSK 420
Query: 417 LEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEK 476
LE+ IDSL E+L + ENK+QD L K++ LEMENK+ EK E++KK E++ K + EK
Sbjct: 421 LEETIDSLREHLSTSENKMQDLLSKVAELEMENKDIAEKLQIELRKKAEDLATWKNKSEK 480
Query: 477 KEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQ 536
E VDS+EKQ QL + L EKE+ LLQ+ ++EK LEDQITE+QA LTAAES+L+EAKKQ
Sbjct: 481 HEKHVDSLEKQVTQLHSNLEEKEEHLLQYKNREKMLEDQITESQALLTAAESKLTEAKKQ 540
Query: 537 YDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKC 596
YD+MLESKQ+ELS+HLKEISQRNDQ INDIR+KYEVEKLEIVNMEKEKAD+ E+ERK
Sbjct: 541 YDMMLESKQMELSKHLKEISQRNDQAINDIRKKYEVEKLEIVNMEKEKADRAAVELERKY 600
Query: 597 DQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELR 656
+Q LAECKEE +QQL IQ+EHAA+V+ IQQE+D+KEM+LKA H+ E+K A+LQAENELR
Sbjct: 601 NQNLAECKEEMRQQLLCIQDEHAALVLRIQQEHDRKEMSLKAGHMEEIKRAQLQAENELR 660
Query: 657 EKTTKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQED 716
EKTT+L++EHEVQMKAL+CQHEDE R+L EEL LQKSKEDRQRALLQLQWKVM ++PQED
Sbjct: 661 EKTTQLRNEHEVQMKALRCQHEDESRRLQEELDLQKSKEDRQRALLQLQWKVMSDRPQED 720
Query: 717 QEVNSKQAYSISSSKMRDLGVGKRSKRAFARAENEEKDPPFLNEAQTPVSQLLKKVENVN 776
QEV SK+ YS+SS+K+RD G G RS+ A D E QTPVS++LK+V+N N
Sbjct: 721 QEVTSKKDYSVSSTKIRDPGGGIRSQHA--------PDFSLPGETQTPVSKILKRVDNAN 772
Query: 777 TGSMISIPKHHKKVTHHEYEVETSNGRTITKRRKTKSTVMFEDPGKRKKMNTTQAKTPRS 836
TGS++SIPKHHKKVTH EYEVET+NGRT+TKRRKTKSTVMFEDP K KK NT ++ TPRS
Sbjct: 773 TGSVMSIPKHHKKVTHREYEVETTNGRTVTKRRKTKSTVMFEDPRKHKKKNTPKSITPRS 832
Query: 837 VAKGATGGANPHPSNIGDLFSEGSLNPYADDPYAFD 872
VAKG HPSNIGDLFSEGSLNPYADDPYAFD
Sbjct: 833 VAKGTKIRGRSHPSNIGDLFSEGSLNPYADDPYAFD 868
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066949|ref|XP_002302294.1| predicted protein [Populus trichocarpa] gi|222844020|gb|EEE81567.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|302141955|emb|CBI19158.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359492851|ref|XP_003634472.1| PREDICTED: synaptonemal complex protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356550779|ref|XP_003543761.1| PREDICTED: synaptonemal complex protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356552884|ref|XP_003544792.1| PREDICTED: synaptonemal complex protein 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449508027|ref|XP_004163196.1| PREDICTED: LOW QUALITY PROTEIN: synaptonemal complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449436866|ref|XP_004136213.1| PREDICTED: synaptonemal complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357489627|ref|XP_003615101.1| Synaptonemal complex protein [Medicago truncatula] gi|355516436|gb|AES98059.1| Synaptonemal complex protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|79349253|ref|NP_173645.3| synaptonemal complex protein 1 [Arabidopsis thaliana] gi|47606316|sp|Q9LME2.1|SYCP1_ARATH RecName: Full=Synaptonemal complex protein 1; AltName: Full=Synaptonemal complex central region protein ZYP1a gi|9392688|gb|AAF87265.1|AC068562_12 T16E15.12 [Arabidopsis thaliana] gi|66394506|gb|AAY46119.1| synaptonemal complex central region protein ZYP1a [Arabidopsis thaliana] gi|332192096|gb|AEE30217.1| synaptonemal complex protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 872 | ||||||
| TAIR|locus:2015031 | 871 | ZYP1a [Arabidopsis thaliana (t | 0.994 | 0.995 | 0.523 | 3.1e-241 | |
| TAIR|locus:505006139 | 856 | ZYP1b [Arabidopsis thaliana (t | 0.978 | 0.996 | 0.514 | 2.6e-230 | |
| DICTYBASE|DDB_G0287291 | 1738 | abpD "interaptin" [Dictyosteli | 0.797 | 0.399 | 0.223 | 8.2e-32 | |
| SGD|S000002216 | 1790 | USO1 "Protein involved in the | 0.780 | 0.380 | 0.245 | 2.2e-30 | |
| DICTYBASE|DDB_G0271058 | 1528 | vilC "villin-like protein C" [ | 0.807 | 0.460 | 0.245 | 2.2e-30 | |
| UNIPROTKB|Q02224 | 2701 | CENPE "Centromere-associated p | 0.790 | 0.255 | 0.215 | 9.4e-29 | |
| UNIPROTKB|J9P2D7 | 1364 | EEA1 "Uncharacterized protein" | 0.768 | 0.491 | 0.226 | 2.7e-28 | |
| UNIPROTKB|F1PZD3 | 1411 | EEA1 "Uncharacterized protein" | 0.768 | 0.474 | 0.226 | 2.9e-28 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.826 | 0.336 | 0.230 | 1.1e-27 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.826 | 0.335 | 0.230 | 1.1e-27 |
| TAIR|locus:2015031 ZYP1a [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2325 (823.5 bits), Expect = 3.1e-241, P = 3.1e-241
Identities = 459/876 (52%), Positives = 650/876 (74%)
Query: 1 MQKLGFPSVKSLDQFXXXXXXXXXXXXXXXXXXXXXXXXXFANLKLTAEKLVKEQASVKT 60
MQKLGFP++KSLD+ F+NLKLTAEKLVK+QA+++T
Sbjct: 1 MQKLGFPAMKSLDKPRSLSGSANMYSFSNRKPPDSVSSGSFSNLKLTAEKLVKDQAAMRT 60
Query: 61 DLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQ 120
DLE+AN KLKKSMEHV LEEKLQNA NENAKL+V++KEDEKLW+GLESKFSSTKTL DQ
Sbjct: 61 DLELANCKLKKSMEHVYALEEKLQNAFNENAKLRVRKKEDEKLWRGLESKFSSTKTLCDQ 120
Query: 121 LTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKE 180
LTETLQHLASQVQDAEK+K FFE K S+S A+D QQM +SL+L +A+E IT R+KE
Sbjct: 121 LTETLQHLASQVQDAEKDKGFFETKFSTSSEAIDSLNQQMRDMSLRLDAAKEEITSRDKE 180
Query: 181 LEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRLETESLNSKVEEMHID 240
LE+LK+E+++++ Y+ E C T++L++K DA+I KLE + A+ +L E+LNS++E++H++
Sbjct: 181 LEELKLEKQQKEMFYQTERCGTASLIEKKDAVITKLEASAAERKLNIENLNSQLEKVHLE 240
Query: 241 LQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVHVFAAQLVDL 300
L +KEDE+K L+ +E LEKEK+ +Q+S D+ +KLV+S +E+K L+ V A+L +L
Sbjct: 241 LTTKEDEVKDLVSIQEKLEKEKTSVQLSADNCFEKLVSSEQEVKKLDELVQYLVAELTEL 300
Query: 301 DKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLV 360
DK++LTF EKF +L+ Y++ +Q +RDL+ +AQ +D L + F +A+ K+AL+
Sbjct: 301 DKKNLTFKEKFDKLSGLYDTHIMLLQKDRDLALDRAQRSFDNLQGELFRVAATKEALESA 360
Query: 361 NQELNSKIIKLQKTQESVKAQCLEECRLA-GEKISRLESEAEALISKKIETELLVSKLEK 419
ELN KI++LQ +ES+ +Q L R + + I +LESEA+ L+SK + E +S+L++
Sbjct: 361 GNELNEKIVELQNDKESLISQ-LSGLRCSTSQTIDKLESEAKGLVSKHADAESAISQLKE 419
Query: 420 EIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEINNLKQEHEKKEM 479
E+++LLE++++ E+K Q+ LK+SSLEME+KE EK A+ Q++ EE+ L++E E ++
Sbjct: 420 EMETLLESVKTSEDKKQELSLKLSSLEMESKEKCEKLQADAQRQVEELETLQKESESHQL 479
Query: 480 LVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDL 539
D + K+ QLQ ++ EK ++LQ N+ EK+L QI +++ L AE++L+EAKKQYDL
Sbjct: 480 QADLLAKEVNQLQTVIEEKGHVILQCNENEKQLNQQIIKDKELLATAETKLAEAKKQYDL 539
Query: 540 MLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADKTIGEMERKCDQK 599
MLESKQLELSRHLKE+SQRNDQ IN+IRRKY+VEK EI+N EK+K +K I ++ K D++
Sbjct: 540 MLESKQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKIIKDLSNKFDKE 599
Query: 600 LAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCAELQAENELREKT 659
L++CKEE+K+QL IQEEH+++++S+++E++ KE+NLKA++ EL+ +++QAENEL+E+
Sbjct: 600 LSDCKEESKRQLLTIQEEHSSLILSLREEHESKELNLKAKYDQELRQSQIQAENELKERI 659
Query: 660 TKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEV 719
T LKSEH+ Q+KA +CQ+ED+C+KL EEL LQ+ KE+RQRAL+QLQWKVM + P E+QEV
Sbjct: 660 TALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRKKEERQRALVQLQWKVMSDNPPEEQEV 719
Query: 720 NSKQAYSISSSKMRDLGVGKRSKRAFARAENEE-KDPPFLNEAQTPVSQLLKKVENVNTG 778
NS + YSIS LG KRS+ R++N+ +D PF+ +TPVS++LKK +NVN G
Sbjct: 720 NSNKNYSISKDSR--LGGSKRSEHIRVRSDNDNVQDSPFVKAKETPVSKILKKAQNVNAG 777
Query: 779 SMISIP--KHHKKVTHHEYEVETSNGXXXXXXXXXXSTVMFEDPGKRKKMNTTQAKTPRS 836
S++SIP KHH KVTH EYEVET+NG +T MFE+P +R++ T TP+S
Sbjct: 778 SVLSIPNPKHHSKVTHREYEVETNNGRVTKRRKTR-NTTMFEEP-QRRRTRATPKLTPQS 835
Query: 837 VAKGATGGANPHPSNIGDLFSEGSLNPYADDPYAFD 872
+AKG ++ +NIGDLFSEGSLNPYADDPYAFD
Sbjct: 836 IAKGTGMTSHARSANIGDLFSEGSLNPYADDPYAFD 871
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| TAIR|locus:505006139 ZYP1b [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0287291 abpD "interaptin" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LME2 | SYCP1_ARATH | No assigned EC number | 0.5490 | 0.9942 | 0.9954 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_II000447 | hypothetical protein (874 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | eugene3.00141225 | • | 0.429 | ||||||||
 | gw1.I.2464.1 | • | 0.404 | ||||||||
 | gw1.145.162.1 | • | 0.404 | ||||||||
 | eugene3.00012639 | • | 0.401 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 872 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-06 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 6e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 8e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 9e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 6e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-04 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 0.001 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 0.003 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-11
Identities = 74/365 (20%), Positives = 163/365 (44%), Gaps = 29/365 (7%)
Query: 350 IASEKDALQLVNQELNSKIIKLQKTQESVKA--QCLEECRLAGEKISRLESEAEALISKK 407
+ ++ L + +L +L+ + +++ LEE R E++ R E + ++
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728
Query: 408 IETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENMEKFHAEMQKKEEEI 467
E + +E++ LE L +LQ++L ++ +E + K E+++ EE+
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
Query: 468 NNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAE 527
L++E E+ E ++ E++ L+ L EQ + + ++LE++I E + +L E
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 528 SRLSEAKKQYDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEKADK 587
L E +K+ LE + EL E + D E+ ++ + E + E+ +E E A+
Sbjct: 849 EELEELEKE----LEELKEELEELEAEKEELED-ELKELEEEKEELEEELRELESELAEL 903
Query: 588 TIGEMERKCDQKLAECKEEAKQQLKRIQEEHAAIVISIQQEYDKKEMNLKAEHIGELKCA 647
+KL E EE + +L+R++ E + +++EY+
Sbjct: 904 KEEI------EKLRERLEELEAKLERLEVELPELEEELEEEYEDT--------------L 943
Query: 648 ELQAENELREKTTKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQLQWK 707
E + E E+ ++++ V ++A++ +E + +EEL Q+ + + L +
Sbjct: 944 ETELEREIERLEEEIEALGPVNLRAIEEY--EEVEERYEELKSQREDLEEAKEKLLEVIE 1001
Query: 708 VMGNK 712
+ +
Sbjct: 1002 ELDKE 1006
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 872 | |||
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 100.0 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.97 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.93 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.89 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.89 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 99.73 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.72 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.71 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.7 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 99.69 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.69 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.68 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.66 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.66 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.62 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.62 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.61 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.59 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.58 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.52 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.45 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.44 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.41 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.37 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.21 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.15 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 99.12 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 99.09 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.08 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.01 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.96 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.94 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 98.94 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.93 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 98.85 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 98.84 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.82 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.81 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.78 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.76 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.76 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.71 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.71 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.7 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.69 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.68 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.66 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.66 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.57 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.55 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 98.53 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.47 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 98.47 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 98.45 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 98.43 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.4 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.39 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.39 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 98.37 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.37 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 98.33 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 98.31 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.15 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.11 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.07 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 97.97 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.87 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.85 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.85 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.85 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.84 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.81 | |
| PRK09039 | 343 | hypothetical protein; Validated | 97.73 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 97.67 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 97.63 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.59 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.58 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.58 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.49 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 97.44 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 97.29 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 97.28 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.24 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.21 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.21 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 97.18 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.18 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.15 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.15 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.14 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 97.11 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.98 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 96.93 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.89 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.85 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.83 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 96.78 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.72 | |
| PF13514 | 1111 | AAA_27: AAA domain | 96.69 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 96.64 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 96.57 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 96.55 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 96.51 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 96.36 | |
| PRK09039 | 343 | hypothetical protein; Validated | 96.34 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 96.17 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 96.14 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 96.05 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 96.02 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 96.01 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.96 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 95.86 | |
| PF13514 | 1111 | AAA_27: AAA domain | 95.85 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 95.84 | |
| KOG1937 | 521 | consensus Uncharacterized conserved protein [Funct | 95.69 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 95.56 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 95.44 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 95.39 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 95.39 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 95.38 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 95.32 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 95.28 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 95.12 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.09 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.9 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 94.8 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 94.67 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 94.65 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 94.62 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 94.57 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 94.54 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 94.48 | |
| KOG4807 | 593 | consensus F-actin binding protein, regulates actin | 94.46 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 94.36 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.36 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 94.31 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.28 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 94.28 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 94.18 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 94.06 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 93.85 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 93.75 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 93.61 | |
| PF10212 | 518 | TTKRSYEDQ: Predicted coiled-coil domain-containing | 93.31 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 93.25 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 93.21 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 93.14 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.11 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.09 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 92.79 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 92.76 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 92.42 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 92.28 | |
| KOG2196 | 254 | consensus Nuclear porin [Nuclear structure] | 92.0 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 91.95 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 91.89 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 91.74 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 91.68 | |
| PF09738 | 302 | DUF2051: Double stranded RNA binding protein (DUF2 | 91.6 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 91.5 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 91.35 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 91.25 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 91.04 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 90.79 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 90.6 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 90.45 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 90.33 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 90.21 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 90.07 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 90.04 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 89.93 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 89.67 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 89.57 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 88.9 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 88.77 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 88.36 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.36 | |
| KOG2991 | 330 | consensus Splicing regulator [RNA processing and m | 88.33 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 88.29 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 87.94 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 87.91 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 87.42 | |
| KOG4302 | 660 | consensus Microtubule-associated protein essential | 87.25 | |
| PF04582 | 326 | Reo_sigmaC: Reovirus sigma C capsid protein; Inter | 87.15 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 86.94 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 86.65 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 86.62 | |
| KOG0249 | 916 | consensus LAR-interacting protein and related prot | 86.51 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 86.51 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 86.26 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 86.0 | |
| PF01442 | 202 | Apolipoprotein: Apolipoprotein A1/A4/E domain; Int | 85.6 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 85.4 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 85.35 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 84.81 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 84.55 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 83.62 | |
| COG2433 | 652 | Uncharacterized conserved protein [Function unknow | 83.57 | |
| PF01442 | 202 | Apolipoprotein: Apolipoprotein A1/A4/E domain; Int | 83.15 | |
| COG1382 | 119 | GimC Prefoldin, chaperonin cofactor [Posttranslati | 83.14 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 82.75 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 82.24 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 82.21 | |
| PF05384 | 159 | DegS: Sensor protein DegS; InterPro: IPR008595 Thi | 82.17 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 82.0 | |
| KOG4403 | 575 | consensus Cell surface glycoprotein STIM, contains | 81.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 81.57 | |
| PF07889 | 126 | DUF1664: Protein of unknown function (DUF1664); In | 81.22 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 80.89 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 80.81 | |
| KOG0979 | 1072 | consensus Structural maintenance of chromosome pro | 80.67 | |
| PF08581 | 79 | Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t | 80.32 | |
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 80.03 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 80.01 |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-25 Score=283.31 Aligned_cols=590 Identities=21% Similarity=0.225 Sum_probs=456.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 88 NENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLTETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 88 ~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
...+.+...+..+......++...+.+..+++++..++..+.....+++..++.++..+.+++.+++++++++.++..+.
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~ 1268 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKR 1268 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888899999999999999999999999999999999999999999999999999999887766665
Q ss_pred --------------HhHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-
Q 002878 168 --------------GSAEEII-------TKREKELEDLKIEREERDKLYRDECCRTSNLMDKNDAMIKKLEVTVADNRL- 225 (872)
Q Consensus 168 --------------ee~e~~l-------~~~~~eLe~Lk~~lee~~k~~~~~~~~~~~l~~e~~~l~e~~Eee~~e~k~- 225 (872)
++++..+ ..+..+|+.+++++++.++.......++..+.++++.+.++++++.+ .+.
T Consensus 1269 ~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e-~~~~ 1347 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQE-AKNE 1347 (1930)
T ss_pred HHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333332 44889999999999999999999999999999999999999999984 555
Q ss_pred ---HHHHHhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 226 ---ETESLNSKVEEMHIDLQSKEDE-IKLLMITKENLEKEKSDLQMSR-------DSFEKKLVTSIREIKNLEGFVHVFA 294 (872)
Q Consensus 226 ---el~~l~~el~~~~~~L~~~~e~-l~~l~~~~~~lEKek~~Lq~e~-------d~~~~~l~~le~e~~~l~~~l~~~~ 294 (872)
.+..++.++.+|...+.....+ .+.+...+..+......++..+ +.+......+..++.++..++....
T Consensus 1348 l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1348 LERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSR 1427 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4666799999998866554443 3334444444444444443333 4444445556667788888888888
Q ss_pred HHHhHhhHhhHHHHHHHHhhHHhHHHhhhhhHhhhhhhHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002878 295 AQLVDLDKQSLTFMEKFYQLNSHYESCFQSVQMERDLSSQQAQNQYDQLNDKFFSIASEKDALQLVNQELNSKIIKLQKT 374 (872)
Q Consensus 295 ~~l~eldkk~~~f~~k~~kl~~~~~~~~~~~~~E~d~~~~e~k~~~~el~~~~~~l~~e~~~L~~el~eL~~ql~~L~~~ 374 (872)
..+..|++++. +|+++...|......++.+++....+.+.. ..+...+...+.++...++.+.+.
T Consensus 1428 ~~~~~le~k~k----~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~-----------~tel~kl~~~lee~~e~~e~l~re 1492 (1930)
T KOG0161|consen 1428 AAVAALEKKQK----RFEKLLAEWKKKLEKLQAELDAAQRELRQL-----------STELQKLKNALEELLEQLEELRRE 1492 (1930)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887 888889999999998888888776665431 122333444444444444444443
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 002878 375 QESVKAQCLEECRLAGEKISRLESEAEALISKKIETELLVSKLEKEIDSLLENLRSFENKLQDQLLKISSLEMENKENME 454 (872)
Q Consensus 375 ~~~l~~ql~ee~~~le~~i~~Le~e~e~L~~~~e~le~~i~eLe~ei~~l~~ei~e~E~~~e~Le~~l~~Le~~~~~~~~ 454 (872)
+ ..+..++..+...+.++...+.+++.....++.++..+...+.+++..++..++...+++..+...+.
T Consensus 1493 n-----------k~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~ 1561 (1930)
T KOG0161|consen 1493 N-----------KNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRS 1561 (1930)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3 23334455555555666666666666666666667777777777888777777777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 455 KFHAEMQKKEEEINNLKQEHEKKEMLVDSIEKQFCQLQNILGEKEQLLLQHNDKEKKLEDQITENQAQLTAAESRLSEAK 534 (872)
Q Consensus 455 ~lq~el~~~eeele~lrk~l~~Le~kiesLe~El~~Lk~~lee~~~~i~~~~~~~~~le~~L~elr~q~e~~e~~~~eae 534 (872)
+++..+....++++..++. ++..+++++..+..-.+. ....+.. +++++++|.++..+++.+++...++.
T Consensus 1562 e~er~l~ek~Ee~E~~rk~---~~~~i~~~q~~Le~E~r~---k~e~~r~----KKkle~di~elE~~ld~ank~~~d~~ 1631 (1930)
T KOG0161|consen 1562 EIERRLQEKDEEIEELRKN---LQRQLESLQAELEAETRS---KSEALRS----KKKLEGDINELEIQLDHANKANEDAQ 1631 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHH---HHHHHHHHHHhhhHHHHH---HHHHHhh----hhhhhcchHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999 888888888866532222 3333333 55899999999999999999999988
Q ss_pred HH---HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhHHH----
Q 002878 535 KQ---YDLMLESKQLELSRHLKEISQRNDQEINDIRRKYEVEKLEIVNMEKEK---------ADKTIGEMERKCDQ---- 598 (872)
Q Consensus 535 ~~---y~~~leeLq~e~~~~~eel~~~~k~ei~elrr~i~~L~~Ei~~L~~~~---------le~~l~e~e~r~~~---- 598 (872)
+. |+..+.+++.+++.....-. ++...+..+.+++..+++++..|.... ++.++.++.++.+.
T Consensus 1632 K~lkk~q~~~k~lq~~~e~~~~~~~-e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1632 KQLKKLQAQLKELQRELEDAQRARE-ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 87 67888888888885433333 444888899999999999998888776 66677777666443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002878 599 --KLAECKEEAKQQLKRIQEEHAAIVI--SIQQEYDKKEMNLKAEHIGELKCAELQAENELREKTTKLKSEHEVQMKALQ 674 (872)
Q Consensus 599 --~L~~~k~e~e~~l~~~~eE~e~~~~--~~~~~~~~k~~~~~a~~~~el~~~q~~~~~~~~~~~~~~~~~~e~qik~lq 674 (872)
.+...+++++..|..+++++++... +...++.+|+.++++++.+||..+| +++.+++++++.+|.++|+||
T Consensus 1711 ~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq-----~~~~~le~~k~~LE~~~kdLq 1785 (1930)
T KOG0161|consen 1711 NSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQ-----ETSQKLERLKKSLERQVKDLQ 1785 (1930)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999 8899999999999999999999999 999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhhhcHHHHHHHHHHhhHHHhcCCCcchhhhh
Q 002878 675 CQHEDECRKLHEELHLQKSKEDRQRALLQLQWKVMGNKPQEDQEVN 720 (872)
Q Consensus 675 ~~~ee~~~~~~~~~~~q~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 720 (872)
.+|+|-......-...++++-|=+..-|-.+.-..+....+..-..
T Consensus 1786 ~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~ 1831 (1930)
T KOG0161|consen 1786 LRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGL 1831 (1930)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHH
Confidence 9999998888888888888877777777777766665544444333
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >KOG1937 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG2196 consensus Nuclear porin [Nuclear structure] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >KOG2991 consensus Splicing regulator [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene | Back alignment and domain information |
|---|
| >COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
| >KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
| >KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor [] | Back alignment and domain information |
|---|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-18
Identities = 88/646 (13%), Positives = 212/646 (32%), Gaps = 144/646 (22%)
Query: 126 QHLASQVQDAE-KNKEFFEDKISSSMNAVDCQKQQMDHLSLKLGSAEEIITKREKELEDL 184
H+ + + + + K+ + ++ DC+ Q D + I++K +E++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMP-------KSILSK--EEIDHI 54
Query: 185 KIEREERDKLYR--DECCRTSN---------LMDKN-DAMIKKLEVTVADNRLETESLNS 232
+ ++ R ++ N ++ ++ + T
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 233 KVEEMHIDLQSKEDEIKLLMITKENLEKEKSDLQMSRDSFEKKLVTSIREIKNLEGFVH- 291
+ + ++ D Q K N+ + + L++ ++ + +R KN+ +
Sbjct: 115 QRDRLYNDNQV---------FAKYNVSRLQPYLKL------RQALLELRPAKNV--LIDG 157
Query: 292 -------VFAAQLVDLDKQSLTFMEKFYQLN-SHYESCFQSVQMERDLSSQQAQNQYDQL 343
A + K K + LN + S ++M + L Q N +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSR 216
Query: 344 NDKFFSIASEKDALQLVNQELNSKIIKLQKTQES------VK-AQCLE----ECR-LAGE 391
+D +I ++Q EL +++K + + V+ A+ C+ L
Sbjct: 217 SDHSSNIKLRIHSIQ---AEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-- 270
Query: 392 KISRLESEAEALISKKIETELLVSKL----EKEIDSLLENLRSFENKLQD---QLLKISS 444
+R + + L + L E+ SLL L+ + + QD ++L +
Sbjct: 271 -TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNP 327
Query: 445 LEMENKENMEKFHAEMQKKEEEINNLKQ-EHEKKEMLVD-SIE--------KQFCQLQ-- 492
+ ++ ++ +N K +K +++ S+ K F +L
Sbjct: 328 RRL----SI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 493 ----NILGEKEQLL--LQHNDKEKKLEDQITENQAQLTAAESRLSEAKKQYDLMLESKQL 546
+I LL + + + + + + S + + K+ + + S L
Sbjct: 382 PPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYL 433
Query: 547 ELSRHLKEISQRNDQEIN--DIRRKYEVEKLEIVNMEKEKADK----TIGEMERKCDQKL 600
EL L+ + ++ +I + ++ + L D+ IG + +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-----PPYLDQYFYSHIGHHLKNIEH-- 486
Query: 601 AECKEEAKQQLKRIQEEHAAIVISIQQEY-DKKEMNLKAEHIGELKCAELQAENELR--E 657
E + + + D + + K H A N L+ +
Sbjct: 487 ----PERMTLFRMV--------------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 658 KTTKLKSEHEVQMKALQCQHEDECRKLHEELHLQKSKEDRQRALLQ 703
+++ + + L D K+ E L K + + AL+
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 872 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 99.01 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.98 | |
| 3tnu_B | 129 | Keratin, type II cytoskeletal 5; coiled-coil, stru | 98.69 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.66 | |
| 3tnu_A | 131 | Keratin, type I cytoskeletal 14; coiled-coil, stru | 98.62 | |
| 3trt_A | 77 | Vimentin; cytoskeleton, intermediate filament, alp | 98.6 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.57 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 97.38 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 97.16 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 97.03 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.95 | |
| 3swk_A | 86 | Vimentin; cytoskeleton, intermediate filament, alp | 96.94 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 96.93 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.29 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.88 | |
| 3s4r_A | 93 | Vimentin; alpha-helix, cytoskeleton, intermediate | 95.55 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 95.3 | |
| 3s4r_A | 93 | Vimentin; alpha-helix, cytoskeleton, intermediate | 95.14 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 94.8 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 94.59 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 94.54 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 94.13 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 94.0 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 93.96 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 93.86 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 93.77 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 93.26 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 93.01 | |
| 1gk4_A | 84 | Vimentin; intermediate filament, dimer, parallel c | 92.95 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 92.72 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.39 | |
| 1x8y_A | 86 | Lamin A/C; structural protein, intermediate filame | 92.17 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 92.13 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 90.66 | |
| 3swk_A | 86 | Vimentin; cytoskeleton, intermediate filament, alp | 90.49 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 90.47 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 89.8 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 89.68 | |
| 3s84_A | 273 | Apolipoprotein A-IV; four helix bundle, transport | 88.47 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 88.1 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 87.42 | |
| 3tnu_A | 131 | Keratin, type I cytoskeletal 14; coiled-coil, stru | 87.12 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 86.86 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 86.65 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 86.56 | |
| 2e7s_A | 135 | RAB guanine nucleotide exchange factor SEC2; coile | 86.26 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 86.17 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 84.58 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 82.44 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 81.55 | |
| 2e7s_A | 135 | RAB guanine nucleotide exchange factor SEC2; coile | 80.41 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 80.24 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-05 Score=84.45 Aligned_cols=125 Identities=10% Similarity=0.151 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHhHhhhhhhhHHHH
Q 002878 43 NLKLTAEKLVKEQASVKTDLEMANSKLKKSMEHVRILEEKLQNAVNENAKLKVKQKEDEKLWKGLESKFSSTKTLSDQLT 122 (872)
Q Consensus 43 ~lk~~l~~l~~e~e~lq~el~e~~~kiek~~~~i~lleeri~~l~~~~~~L~~~i~el~~~~~~Le~k~s~~k~~~~~l~ 122 (872)
.++..+..+...++.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666665555555555555555555555555555544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002878 123 ETLQHLASQVQDAEKNKEFFEDKISSSMNAVDCQKQQMDHLSLKL 167 (872)
Q Consensus 123 ~~l~~l~~~i~~~E~~~~~lE~el~e~~~kl~el~rql~dl~akL 167 (872)
..+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (284)
T 1c1g_A 83 ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333333333333
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00