Citrus Sinensis ID: 002975
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | 2.2.26 [Sep-21-2011] | |||||||
| Q5G1T1 | 850 | Pentatricopeptide repeat- | yes | no | 0.974 | 0.987 | 0.618 | 0.0 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.923 | 0.915 | 0.367 | 1e-158 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.988 | 0.956 | 0.346 | 1e-155 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.908 | 0.734 | 0.353 | 1e-155 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.893 | 0.950 | 0.369 | 1e-153 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.932 | 0.836 | 0.350 | 1e-151 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.915 | 0.795 | 0.368 | 1e-151 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.903 | 0.893 | 0.352 | 1e-150 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.927 | 0.803 | 0.369 | 1e-150 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.897 | 0.939 | 0.370 | 1e-149 |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/870 (61%), Positives = 670/870 (77%), Gaps = 31/870 (3%)
Query: 1 MMTLSLPAPAKIPPPSSFKPSNPSRQNLPPSSSPPFIAQPTTSEPLSNRLIY-HLNDGRV 59
M++ S P+PAK+P S +PS +R N +++RLI HLN G +
Sbjct: 3 MISFSFPSPAKLPIKS--QPSVSNRIN------------------VADRLILRHLNAGDL 42
Query: 60 QKAIFTLDLMTQKGNHP-DLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS 118
+ A+ LDLM + G P D T+S LLKSCIR+R+F LGKLVH+ L +EP+SV+ NS
Sbjct: 43 RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102
Query: 119 LISLYSKCGDLNEANKIFKSMG--NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGF 176
LISLYSK GD +A +F++M KRD+VSWS+M++ Y N G+++DAI +FVE LELG
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162
Query: 177 CPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESA 236
PN+YC++AVIRACSN++ V +G + GFL+K G+F+SDVCVGC+LIDMFVKG E+A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222
Query: 237 YKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSEL 296
YKVFDKM+E N V WTLMITRC Q+G PR+AIR FLDM+LSGF D+FTLS V SAC+EL
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282
Query: 297 ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT 356
E + GKQLHSWAIR+GL D V CSLVDMYAKC+ DGSVDD RKVFDRM DH+VMSWT
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340
Query: 357 AIITGYVQSGGRDKEAVKLFSDMI-QGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAV 415
A+ITGY+++ EA+ LFS+MI QG V PNHFTF+S KACGNL D V +QV A
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF 400
Query: 416 KRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475
KRG A + V NS+ISM+ +S RMEDA++AFESL EKNLVSYNT +D +NLN E+AF+
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 476 LLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535
LL EI + +G SA+TFASLLSG +++G+I KGEQIH++++K G N + NALISMYS
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520
Query: 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIA 595
+C +++ A +VF ME+RNVISWTSMITGFAKHGFA R LE F +M+ +G+KPN +TY+A
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580
Query: 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS 655
+LSACSH GL+SEGW+HF SMY++H I +MEHYACMVDLL R+G LT+A EFI +MP
Sbjct: 581 ILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ 640
Query: 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIR 715
ADVLVWRTFLGACRVH +TELGK AA ILE DP +PAA+I LSN+YA AG WE +R
Sbjct: 641 ADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMR 700
Query: 716 KRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTN 775
++MKERNL+KE GCSWIE +K+HKF+VG+T+HP +IY ELD+L +IK GY+PDT+
Sbjct: 701 RKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTD 760
Query: 776 FVLHEL----EEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYI 831
VLH+L +E +K + L+QHSEKIAVAFGLISTSKS+P+RVFKNLRVCGDCH A+KYI
Sbjct: 761 LVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYI 820
Query: 832 SMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
S V+GREIVLRD NRFHH KDGKCSCNDYW
Sbjct: 821 STVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1441), Expect = e-158, Method: Compositional matrix adjust.
Identities = 297/809 (36%), Positives = 483/809 (59%), Gaps = 14/809 (1%)
Query: 56 DGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVI 115
DGR Q+A + + G D +S +LK + G+ +H + + +
Sbjct: 71 DGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSV 130
Query: 116 LNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG 175
SL+ Y K + + K+F M +R++V+W+++IS Y + + +F+ M G
Sbjct: 131 GTSLVDTYMKGSNFKDGRKVFDEM-KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG 189
Query: 176 FCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLES 235
PN + F+A + + G ++ ++K G D + V +LI++++K ++
Sbjct: 190 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG-LDKTIPVSNSLINLYLKCG-NVRK 247
Query: 236 AYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSE 295
A +FDK K+ V W MI+ G +A+ +F M L+ + + V+ C+
Sbjct: 248 ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Query: 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRM-LDHNVMS 354
L+ +QLH ++ G D + +L+ Y+KCT ++ D+ ++F + NV+S
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT---AMLDALRLFKEIGCVGNVVS 364
Query: 355 WTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHA 414
WTA+I+G++Q+ G++ EAV LFS+M + V PN FT++ +L A + S V QV
Sbjct: 365 WTAMISGFLQNDGKE-EAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQV---- 419
Query: 415 VKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAF 474
VK VG +L+ Y + G++E+A K F + +K++V+++ M+ YA+ +E A
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479
Query: 475 ELLHEIEDTGVGTSAYTFASLLS-GASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM 533
++ E+ G+ + +TF+S+L+ A++ ++G+G+Q H IKS +S+ C+ +AL++M
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539
Query: 534 YSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITY 593
Y++ N+E+A +VFK +++++SW SMI+G+A+HG A +AL++F +M +K +G+T+
Sbjct: 540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599
Query: 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653
I V +AC+HAGL+ EG K+F M + I EH +CMVDL R+G L +A++ I +MP
Sbjct: 600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659
Query: 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713
A +WRT L ACRVH TELG+ AAE I+ P+D AA++LLSN+YA +G W+ A
Sbjct: 660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719
Query: 714 IRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPD 773
+RK M ERN+ KE G SWIE NK + F G+ SHP +IY +L+ L+ ++K+ GY PD
Sbjct: 720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
Query: 774 TNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISM 833
T++VL ++++E K L QHSE++A+AFGLI+T K P+ + KNLRVCGDCH IK I+
Sbjct: 780 TSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAK 839
Query: 834 VTGREIVLRDSNRFHHI-KDGKCSCNDYW 861
+ REIV+RDSNRFHH DG CSC D+W
Sbjct: 840 IEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust.
Identities = 309/891 (34%), Positives = 514/891 (57%), Gaps = 40/891 (4%)
Query: 3 TLSLPA----PAKIPPPSSFK--------PSNPSRQNLPPSSSPP--FIAQPTTSEPLSN 48
T SLP+ P+++ P S K P++ + S P FI+Q + E +
Sbjct: 8 TFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEWWID 67
Query: 49 RLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSK 108
L + +++A+ T M G PD + LLK+ ++ LGK +H+ + +
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 109 LEPNSV-ILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHM 167
+SV + N+L++LY KCGD K+F + ++R+ VSW+S+ISS + K A+
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI-SERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 168 FVEMLELGFCPNEYCFSAVIRACSN---TENVAIGHIIYGFLLKCGYFDSDVCVGCALID 224
F ML+ P+ + +V+ ACSN E + +G ++ + L+ G +S + L+
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTLVA 244
Query: 225 MFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRF 284
M+ K L S+ + ++ V W +++ Q +A+ +M+L G PD F
Sbjct: 245 MYGKLG-KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 285 TLSGVVSACSELELFTSGKQLHSWAIRTG-LALDVCVGCSLVDMYAKCTVDGSVDDSRKV 343
T+S V+ ACS LE+ +GK+LH++A++ G L + VG +LVDMY C V R+V
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK---QVLSGRRV 360
Query: 344 FDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ-VAPNHFTFASVLKACGNLL 402
FD M D + W A+I GY Q+ DKEA+ LF M + + N T A V+ AC
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNE-HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Query: 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVD 462
+ E ++ VKRG D V N+L+ MY+R G+++ A + F + +++LV++NTM+
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479
Query: 463 AYAKNLNSEKAFELLHEIED-----------TGVGTSAYTFASLLSGASSIGAIGKGEQI 511
Y + + E A LLH++++ + ++ T ++L +++ A+ KG++I
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
Query: 512 HARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFA 571
HA IK+ ++ + +AL+ MY++C ++ + +VF ++ +NVI+W +I + HG
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 572 ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYAC 631
A+++ M+ G+KPN +T+I+V +ACSH+G++ EG + F M ++G+ +HYAC
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 632 MVDLLGRSGSLTEALEFIRSMPLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690
+VDLLGR+G + EA + + MP + W + LGA R+H + E+G+ AA+ +++ +P
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719
Query: 691 DPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPK 750
+ ++LL+N+Y+SAG W+ +R+ MKE+ + KE GCSWIE ++VHKF G++SHP+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779
Query: 751 TLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSK 810
+ ++ L+ L ++++ GY+PDT+ VLH +EE++K L HSEK+A+AFG+++TS
Sbjct: 780 SEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGT 839
Query: 811 PIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
IRV KNLRVC DCH A K+IS + REI+LRD RFH K+G CSC DYW
Sbjct: 840 IIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/789 (35%), Positives = 461/789 (58%), Gaps = 7/789 (0%)
Query: 73 GNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEA 132
G P +S +L +C + + +G+ +H L+ + ++ + N+L+SLY G+L A
Sbjct: 283 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 342
Query: 133 NKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192
IF +M ++RD V+++++I+ G A+ +F M G P+ ++++ ACS
Sbjct: 343 EHIFSNM-SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Query: 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWT 252
+ G ++ + K G+ ++ G AL++++ K D+E+A F + +N V W
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAK-CADIETALDYFLETEVENVVLWN 459
Query: 253 LMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRT 312
+M+ L R++ R+F M + +P+++T ++ C L G+Q+HS I+T
Sbjct: 460 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519
Query: 313 GLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEA 372
L+ V L+DMYAK G +D + + R +V+SWT +I GY Q DK A
Sbjct: 520 NFQLNAYVCSVLIDMYAKL---GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK-A 575
Query: 373 VKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISM 432
+ F M+ + + + + AC L +Q++ A G + D N+L+++
Sbjct: 576 LTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTL 635
Query: 433 YARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTF 492
Y+R G++E++ AFE + +++N +V + ++ N+E+A + + G+ + +TF
Sbjct: 636 YSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 695
Query: 493 ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED 552
S + AS + +G+Q+HA I K+G++S + NALISMY++C ++ A + F E+
Sbjct: 696 GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 755
Query: 553 RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKH 612
+N +SW ++I ++KHGF + AL+ F +M+ ++PN +T + VLSACSH GL+ +G +
Sbjct: 756 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAY 815
Query: 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHG 672
F SM E+G+ + EHY C+VD+L R+G L+ A EFI+ MP+ D LVWRT L AC VH
Sbjct: 816 FESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHK 875
Query: 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWI 732
+ E+G+ AA +LE +P+D A ++LLSNLYA + W+ R++MKE+ + KE G SWI
Sbjct: 876 NMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWI 935
Query: 733 EADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQ 792
E N +H F+VG+ +HP EI+ L + E GY+ D +L+EL+ EQK +F
Sbjct: 936 EVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFI 995
Query: 793 HSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKD 852
HSEK+A++FGL+S + PI V KNLRVC DCH IK++S V+ REI++RD+ RFHH +
Sbjct: 996 HSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEG 1055
Query: 853 GKCSCNDYW 861
G CSC DYW
Sbjct: 1056 GACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/780 (36%), Positives = 445/780 (57%), Gaps = 11/780 (1%)
Query: 82 SLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGN 141
+LLL+ C + + + L+ ++ L L+SL+ + G ++EA ++F+ + +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97
Query: 142 KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHI 201
K +++ + +M+ + A+ FV M P Y F+ +++ C + + +G
Sbjct: 98 KLNVL-YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 202 IYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQL 261
I+G L+K G F D+ L +M+ K + A KVFD+M E++ V W ++ +Q
Sbjct: 157 IHGLLVKSG-FSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVAGYSQN 214
Query: 262 GCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVG 321
G R A+ + M P T+ V+ A S L L + GK++H +A+R+G V +
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS 274
Query: 322 CSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQ 381
+LVDMYAKC GS++ +R++FD ML+ NV+SW ++I YVQ+ KEA+ +F M+
Sbjct: 275 TALVDMYAKC---GSLETARQLFDGMLERNVVSWNSMIDAYVQNEN-PKEAMLIFQKMLD 330
Query: 382 GQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED 441
V P + L AC +L D ++ +V+ G + V NSLISMY + ++
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 442 ARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS 501
A F L + LVS+N M+ +A+N A ++ V +T+ S+++ +
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSM 561
+ + IH +++S + N + AL+ MY++C + A +F M +R+V +W +M
Sbjct: 451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM 510
Query: 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621
I G+ HGF ALE+F +M IKPNG+T+++V+SACSH+GL+ G K F M + +
Sbjct: 511 IDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYS 570
Query: 622 IVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681
I M+HY MVDLLGR+G L EA +FI MP+ V V+ LGAC++H + + AA
Sbjct: 571 IELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAA 630
Query: 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKF 741
E + E +P D H+LL+N+Y +A WE V +R M + L K GCS +E N+VH F
Sbjct: 631 ERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690
Query: 742 HVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAF 801
G T+HP + +IYA L++L IKE GY+PDTN VL +E + K Q L HSEK+A++F
Sbjct: 691 FSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISF 749
Query: 802 GLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
GL++T+ I V KNLRVC DCH A KYIS+VTGREIV+RD RFHH K+G CSC DYW
Sbjct: 750 GLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/810 (35%), Positives = 468/810 (57%), Gaps = 7/810 (0%)
Query: 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPN 112
++++G A+ M +G L ++ LLK+C + R+ G +HSLL +
Sbjct: 157 YVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHST 216
Query: 113 SVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEML 172
I+N+L+S+Y+K DL+ A ++F K D V W+S++SSY GK ++ + +F EM
Sbjct: 217 GFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMH 276
Query: 173 ELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVD 232
G PN Y + + AC +G I+ +LK S++ V ALI M+ +
Sbjct: 277 MTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG-K 335
Query: 233 LESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSA 292
+ A ++ +M + V W +I Q ++A+ F DMI +G D +++ +++A
Sbjct: 336 MPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Query: 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNV 352
L +G +LH++ I+ G ++ VG +L+DMY+KC + + + F RM D ++
Sbjct: 396 SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMG---RAFLRMHDKDL 452
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYT 412
+SWT +I GY Q+ EA++LF D+ + ++ + S+L+A L + ++++
Sbjct: 453 ISWTTVIAGYAQNDCH-VEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHC 511
Query: 413 HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEK 472
H +++G LD + N L+ +Y + M A + FES+ K++VS+ +M+ + A N N +
Sbjct: 512 HILRKG-LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESE 570
Query: 473 AFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALIS 532
A EL + +TG+ + +LS A+S+ A+ KG +IH +++ GF I A++
Sbjct: 571 AVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVD 630
Query: 533 MYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592
MY+ C ++++A VF +E + ++ +TSMI + HG A+E+F KM + + P+ I+
Sbjct: 631 MYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHIS 690
Query: 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652
++A+L ACSHAGL+ EG + M E+ + EHY C+VD+LGR+ + EA EF++ M
Sbjct: 691 FLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMM 750
Query: 653 PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712
VW L ACR H + E+G+ AA+ +LE +P++P +L+SN++A G W V
Sbjct: 751 KTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVE 810
Query: 713 NIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKI-KEFGYL 771
+R +MK + K GCSWIE D KVHKF + SHP++ EIY +L ++ K+ +E GY+
Sbjct: 811 KVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYV 870
Query: 772 PDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYI 831
DT FVLH ++E +KVQ L HSE+IA+A+GL+ T +R+ KNLRVC DCHT K +
Sbjct: 871 ADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLV 930
Query: 832 SMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
S + R+IV+RD+NRFHH + G CSC D W
Sbjct: 931 SKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/822 (36%), Positives = 476/822 (57%), Gaps = 34/822 (4%)
Query: 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCI----RSRNFHLGKLVHSLLTRSK 108
+L G+V++ + M + D+ ++L+LK+ + + L HS S
Sbjct: 190 YLKFGKVKEGKVLFEEMPYR----DVVLWNLMLKAYLEMGFKEEAIDLSSAFHS----SG 241
Query: 109 LEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMI------SSYVNRGKQV 162
L PN + L L + GD ++A ++ KS N D S S +I S Y++ G+
Sbjct: 242 LNPNEITLRLLARI---SGDDSDAGQV-KSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297
Query: 163 DAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCAL 222
+ F +M+E ++ F ++ +++A+G ++ LK G D + V +L
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG-LDLMLTVSNSL 356
Query: 223 IDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPD 282
I+M+ K A VFD M+E++ + W +I Q G +A+ LF+ ++ G PD
Sbjct: 357 INMYCKLR-KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415
Query: 283 RFTLSGVVSACSEL-ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAK--CTVDGSVDD 339
++T++ V+ A S L E + KQ+H AI+ D V +L+D Y++ C + +
Sbjct: 416 QYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF 475
Query: 340 SRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACG 399
R FD +++W A++ GY QS K +KLF+ M + + FT A+V K CG
Sbjct: 476 ERHNFD------LVAWNAMMAGYTQSHDGHK-TLKLFALMHKQGERSDDFTLATVFKTCG 528
Query: 400 NLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNT 459
L N +QV+ +A+K G LD V + ++ MY + G M A+ AF+S+ + V++ T
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588
Query: 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG 519
M+ +N E+AF + ++ GV +T A+L +S + A+ +G QIHA +K
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648
Query: 520 FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFY 579
++ + +L+ MY++C +++ A+ +FK +E N+ +W +M+ G A+HG L++F
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 580 KMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639
+M + GIKP+ +T+I VLSACSH+GL+SE +KH RSM+ ++GI +EHY+C+ D LGR+
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 640 GSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699
G + +A I SM + A ++RT L ACRV GDTE GK A +LE +P D +A++LLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 700 NLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELD 759
N+YA+A W+ + R MK + K+ G SWIE NK+H F V + S+ +T IY ++
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888
Query: 760 QLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLR 819
+ IK+ GY+P+T+F L ++EEE+K + L+ HSEK+AVAFGL+ST S PIRV KNLR
Sbjct: 889 DMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
Query: 820 VCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
VCGDCH A+KYI+ V REIVLRD+NRFH KDG CSC DYW
Sbjct: 949 VCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/788 (35%), Positives = 468/788 (59%), Gaps = 10/788 (1%)
Query: 77 DLDTYSL--LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANK 134
D+D +L +L+ C S++ GK V + + + +S + + L +Y+ CGDL EA++
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 135 IFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTE 194
+F + ++ + W+ +++ G +I +F +M+ G + Y FS V ++ S+
Sbjct: 151 VFDEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209
Query: 195 NVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLM 254
+V G ++GF+LK G+ + + VG +L+ ++K ++SA KVFD+MTE++ + W +
Sbjct: 210 SVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSI 267
Query: 255 ITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGL 314
I G + +F+ M++SG D T+ V + C++ L + G+ +HS ++
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327
Query: 315 ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVK 374
+ + +L+DMY+KC G +D ++ VF M D +V+S+T++I GY + G EAVK
Sbjct: 328 SREDRFCNTLLDMYSKC---GDLDSAKAVFREMSDRSVVSYTSMIAGYAREG-LAGEAVK 383
Query: 375 LFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYA 434
LF +M + ++P+ +T +VL C + ++V+ + D V N+L+ MYA
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA 443
Query: 435 RSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEI-EDTGVGTSAYTFA 493
+ G M++A F + K+++S+NT++ Y+KN + +A L + + E+ T A
Sbjct: 444 KCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVA 503
Query: 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR 553
+L +S+ A KG +IH I+++G+ S+ + N+L+ MY++C + A +F ++ +
Sbjct: 504 CVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK 563
Query: 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHF 613
+++SWT MI G+ HGF A+ +F +M GI+ + I+++++L ACSH+GL+ EGW+ F
Sbjct: 564 DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF 623
Query: 614 RSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGD 673
M E I +EHYAC+VD+L R+G L +A FI +MP+ D +W L CR+H D
Sbjct: 624 NIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHD 683
Query: 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIE 733
+L + AE + E +P++ ++L++N+YA A WE V +RKR+ +R L K GCSWIE
Sbjct: 684 VKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Query: 734 ADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQH 793
+V+ F G++S+P+T I A L ++ ++ E GY P T + L + EE +K + L H
Sbjct: 744 IKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGH 803
Query: 794 SEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDG 853
SEK+A+A G+IS+ K IRV KNLRVCGDCH K++S +T REIVLRDSNRFH KDG
Sbjct: 804 SEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDG 863
Query: 854 KCSCNDYW 861
CSC +W
Sbjct: 864 HCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/817 (36%), Positives = 482/817 (58%), Gaps = 18/817 (2%)
Query: 57 GRVQKAIFTLDLMTQKGNHPDLDTY-SLLLKSC-IRSRNFHLGKLVHSLLTRSKLEPNSV 114
G + A M G+ P T+ SL+ +C + + L + + + +S L +
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLF 244
Query: 115 ILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLEL 174
+ + L+S ++K G L+ A K+F M R+ V+ + ++ V + +A +F++M +
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQM-ETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM 303
Query: 175 -GFCPNEYC-FSAVIRACSNTENVAI--GHIIYGFLLKCGYFDSDVCVGCALIDMFVK-G 229
P Y + S E V + G ++G ++ G D V +G L++M+ K G
Sbjct: 304 IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCG 363
Query: 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGV 289
S+ A +VF MT+K++V W MIT Q GC +A+ + M LP FTL
Sbjct: 364 SI--ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421
Query: 290 VSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD 349
+S+C+ L+ G+Q+H +++ G+ L+V V +L+ +YA+ G +++ RK+F M +
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE---TGYLNECRKIFSSMPE 478
Query: 350 HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQ 409
H+ +SW +II +S EAV F + + N TF+SVL A +L + +Q
Sbjct: 479 HDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQ 538
Query: 410 VYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK-NLVSYNTMVDAYAKNL 468
++ A+K A + N+LI+ Y + G M+ K F + E+ + V++N+M+ Y N
Sbjct: 539 IHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNE 598
Query: 469 NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYN 528
KA +L+ + TG ++ +A++LS +S+ + +G ++HA +++ ES+ + +
Sbjct: 599 LLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGS 658
Query: 529 ALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADG-IK 587
AL+ MYS+C ++ A + F M RN SW SMI+G+A+HG AL++F M DG
Sbjct: 659 ALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTP 718
Query: 588 PNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647
P+ +T++ VLSACSHAGL+ EG+KHF SM D +G+ R+EH++CM D+LGR+G L + +
Sbjct: 719 PDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLED 778
Query: 648 FIRSMPLSADVLVWRTFLGAC-RVHG-DTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705
FI MP+ +VL+WRT LGAC R +G ELGK AAEM+ + +P++ ++LL N+YA+
Sbjct: 779 FIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAG 838
Query: 706 GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKI 765
G WE + RK+MK+ ++ KEAG SW+ + VH F G+ SHP IY +L +L K+
Sbjct: 839 GRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKM 898
Query: 766 KEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLIST-SKSKPIRVFKNLRVCGDC 824
++ GY+P T F L++LE+E K + L HSEK+AVAF L + S + PIR+ KNLRVCGDC
Sbjct: 899 RDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDC 958
Query: 825 HTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
H+A KYIS + GR+I+LRDSNRFHH +DG CSC+D+W
Sbjct: 959 HSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/796 (37%), Positives = 457/796 (57%), Gaps = 23/796 (2%)
Query: 71 QKGNH-PDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDL 129
+ GN ++D L + C N K +H+ L SK N I L++LY G++
Sbjct: 46 KNGNESKEIDDVHTLFRYCT---NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNV 102
Query: 130 NEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMF-VEMLELGFCPNEYCFSAVIR 188
A F + N RD+ +W+ MIS Y G + I F + ML G P+ F +V++
Sbjct: 103 ALARHTFDHIQN-RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLK 161
Query: 189 ACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNT 248
AC V G+ I+ LK G F DV V +LI ++ + + +A +FD+M ++
Sbjct: 162 AC---RTVIDGNKIHCLALKFG-FMWDVYVAASLIHLYSRYKA-VGNARILFDEMPVRDM 216
Query: 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLP-DRFTLSGVVSACSELELFTSGKQLHS 307
W MI+ Q G ++A+ L +G D T+ ++SAC+E F G +HS
Sbjct: 217 GSWNAMISGYCQSGNAKEALTLS-----NGLRAMDSVTVVSLLSACTEAGDFNRGVTIHS 271
Query: 308 WAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGG 367
++I+ GL ++ V L+D+YA+ G + D +KVFDRM +++SW +II Y +
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEF---GRLRDCQKVFDRMYVRDLISWNSIIKAY-ELNE 327
Query: 368 RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDD-CVG 426
+ A+ LF +M ++ P+ T S+ L D V +++G L+D +G
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG 387
Query: 427 NSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG-V 485
N+++ MYA+ G ++ AR F L +++S+NT++ YA+N + +A E+ + +E+ G +
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447
Query: 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQ 545
+ T+ S+L S GA+ +G ++H R++K+G + + +L MY +C +E A
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALS 507
Query: 546 VFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605
+F ++ N + W ++I HG +A+ +F +ML +G+KP+ IT++ +LSACSH+GL
Sbjct: 508 LFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 567
Query: 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFL 665
+ EG F M ++GI ++HY CMVD+ GR+G L AL+FI+SM L D +W L
Sbjct: 568 VDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALL 627
Query: 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIK 725
ACRVHG+ +LGK A+E + E +P+ H+LLSN+YASAG WE V IR + L K
Sbjct: 628 SACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK 687
Query: 726 EAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQ 785
G S +E DNKV F+ G +HP E+Y EL L K+K GY+PD FVL ++E+++
Sbjct: 688 TPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDE 747
Query: 786 KVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSN 845
K L HSE++A+AF LI+T IR+FKNLRVCGDCH+ K+IS +T REI++RDSN
Sbjct: 748 KEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSN 807
Query: 846 RFHHIKDGKCSCNDYW 861
RFHH K+G CSC DYW
Sbjct: 808 RFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | ||||||
| 296083564 | 827 | unnamed protein product [Vitis vinifera] | 0.950 | 0.989 | 0.750 | 0.0 | |
| 359497798 | 809 | PREDICTED: pentatricopeptide repeat-cont | 0.939 | 1.0 | 0.750 | 0.0 | |
| 449467092 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.996 | 0.669 | 0.0 | |
| 449514605 | 849 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.982 | 0.996 | 0.667 | 0.0 | |
| 224132926 | 723 | predicted protein [Populus trichocarpa] | 0.821 | 0.977 | 0.748 | 0.0 | |
| 30693150 | 850 | pentatricopeptide repeat-containing prot | 0.974 | 0.987 | 0.618 | 0.0 | |
| 356577722 | 820 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.967 | 0.643 | 0.0 | |
| 357470275 | 839 | Pentatricopeptide repeat-containing prot | 0.931 | 0.955 | 0.634 | 0.0 | |
| 296090723 | 634 | unnamed protein product [Vitis vinifera] | 0.723 | 0.982 | 0.777 | 0.0 | |
| 359497772 | 629 | PREDICTED: pentatricopeptide repeat-cont | 0.714 | 0.977 | 0.781 | 0.0 |
| >gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1284 bits (3322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/818 (75%), Positives = 690/818 (84%)
Query: 44 EPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSL 103
EPL NRLI L+ GR+ A TLDLMTQ+ PDL TYS+LLKSCIR RNF LGKLVH
Sbjct: 10 EPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRK 69
Query: 104 LTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVD 163
L +S LE +SV+LN+LISLYSKCGD A IF+ MGNKRD+VSWS+M+S + N +
Sbjct: 70 LMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ 129
Query: 164 AIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALI 223
AI F++MLELGF PNEYCF+AVIRACSN +G IIYGF++K GY ++DVCVGC LI
Sbjct: 130 AIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELI 189
Query: 224 DMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283
DMFVKGS DL SAYKVFDKM E+N V WTLMITR QLGC RDAI LFLDM LSG++PDR
Sbjct: 190 DMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 249
Query: 284 FTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKV 343
FT S V+SAC+EL L GKQLHS IR GLALDVCVGCSLVDMYAKC DGSVDDSRKV
Sbjct: 250 FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 309
Query: 344 FDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLD 403
F++M +HNVMSWTAIIT YVQSG DKEA++LF MI G + PNHF+F+SVLKACGNL D
Sbjct: 310 FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSD 369
Query: 404 SNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDA 463
EQVY++AVK G A +CVGNSLISMYARSGRMEDARKAF+ LFEKNLVSYN +VD
Sbjct: 370 PYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 429
Query: 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN 523
YAKNL SE+AF L +EI DTG+G SA+TFASLLSGA+SIGA+GKGEQIH R++K G++SN
Sbjct: 430 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSN 489
Query: 524 HCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583
CI NALISMYSRC N+EAAFQVF EMEDRNVISWTSMITGFAKHGFA RALE+F+KML
Sbjct: 490 QCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLE 549
Query: 584 DGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643
G KPN ITY+AVLSACSH G+ISEG KHF SMY EHGIV RMEHYACMVDLLGRSG L
Sbjct: 550 TGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLV 609
Query: 644 EALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703
EA+EFI SMPL AD LVWRT LGACRVHG+TELG+HAAEMILEQ+P DPAA+ILLSNL+A
Sbjct: 610 EAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 669
Query: 704 SAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLAL 763
SAG W+ V IRK MKERNLIKEAGCSWIE +N+VH+FHVGETSHP+ +IY ELDQLA
Sbjct: 670 SAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLAS 729
Query: 764 KIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGD 823
KIKE GY+PDT+FVLH++EEEQK Q+LFQHSEKIAVAFGLISTS+SKPIR+FKNLRVCGD
Sbjct: 730 KIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGD 789
Query: 824 CHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
CHTAIKYISM TGREIV+RDSNRFHHIK+G CSCNDYW
Sbjct: 790 CHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1270 bits (3286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/809 (75%), Positives = 683/809 (84%)
Query: 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPN 112
L+ GR+ A TLDLMTQ+ PDL TYS+LLKSCIR RNF LGKLVH L +S LE +
Sbjct: 1 QLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELD 60
Query: 113 SVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEML 172
SV+LN+LISLYSKCGD A IF+ MGNKRD+VSWS+M+S + N + AI F++ML
Sbjct: 61 SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML 120
Query: 173 ELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVD 232
ELGF PNEYCF+AVIRACSN +G IIYGF++K GY ++DVCVGC LIDMFVKGS D
Sbjct: 121 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 180
Query: 233 LESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSA 292
L SAYKVFDKM E+N V WTLMITR QLGC RDAI LFLDM LSG++PDRFT S V+SA
Sbjct: 181 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 240
Query: 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNV 352
C+EL L GKQLHS IR GLALDVCVGCSLVDMYAKC DGSVDDSRKVF++M +HNV
Sbjct: 241 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYT 412
MSWTAIIT YVQSG DKEA++LF MI G + PNHF+F+SVLKACGNL D EQVY+
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360
Query: 413 HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEK 472
+AVK G A +CVGNSLISMYARSGRMEDARKAF+ LFEKNLVSYN +VD YAKNL SE+
Sbjct: 361 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 420
Query: 473 AFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALIS 532
AF L +EI DTG+G SA+TFASLLSGA+SIGA+GKGEQIH R++K G++SN CI NALIS
Sbjct: 421 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 480
Query: 533 MYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592
MYSRC N+EAAFQVF EMEDRNVISWTSMITGFAKHGFA RALE+F+KML G KPN IT
Sbjct: 481 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 540
Query: 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652
Y+AVLSACSH G+ISEG KHF SMY EHGIV RMEHYACMVDLLGRSG L EA+EFI SM
Sbjct: 541 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600
Query: 653 PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712
PL AD LVWRT LGACRVHG+TELG+HAAEMILEQ+P DPAA+ILLSNL+ASAG W+ V
Sbjct: 601 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVV 660
Query: 713 NIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLP 772
IRK MKERNLIKEAGCSWIE +N+VH+FHVGETSHP+ +IY ELDQLA KIKE GY+P
Sbjct: 661 KIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIP 720
Query: 773 DTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYIS 832
DT+FVLH++EEEQK Q+LFQHSEKIAVAFGLISTS+SKPIR+FKNLRVCGDCHTAIKYIS
Sbjct: 721 DTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYIS 780
Query: 833 MVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
M TGREIV+RDSNRFHHIK+G CSCNDYW
Sbjct: 781 MATGREIVVRDSNRFHHIKNGVCSCNDYW 809
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/850 (66%), Positives = 692/850 (81%), Gaps = 4/850 (0%)
Query: 12 IPPPSSFKPSNPSRQNLPPSSSPPFIAQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQ 71
+P P++ K PS P F T PL+ RLI +N+GR+ KAI TL+ M
Sbjct: 4 LPLPTTLKIPFPSSNPSSSLQFPTF----TNPNPLTGRLIQEINNGRLHKAISTLEHMVH 59
Query: 72 KGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNE 131
+G+HPDL TYSL LK CIR+R+F +G LVH LT+S L+ +SV LNSLISLYSKCG +
Sbjct: 60 QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119
Query: 132 ANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACS 191
A IF+ MG+ RD++SWS+M+S + N A+ FV+M+E G+ PNEYCF+A RACS
Sbjct: 120 ATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179
Query: 192 NTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGW 251
E V++G I+GF++K GY SDVCVGC LIDMFVKG DL SA+KVF+KM E+N V W
Sbjct: 180 TAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTW 239
Query: 252 TLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIR 311
TLMITR Q G +AI LFL+MILSG+ PDRFTLSGV+SAC+ +EL G+QLHS AIR
Sbjct: 240 TLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIR 299
Query: 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKE 371
GL LD CVGC L++MYAKC+VDGS+ +RK+FD++LDHNV SWTA+ITGYVQ GG D+E
Sbjct: 300 HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEE 359
Query: 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLIS 431
A+ LF MI V PNHFTF+S LKAC NL + EQV+THAVK G + +CV NSLIS
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS 419
Query: 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT 491
MYARSGR++DARKAF+ LFEKNL+SYNT++DAYAKNLNSE+A EL +EIED G+G SA+T
Sbjct: 420 MYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFT 479
Query: 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
FASLLSGA+SIG IGKGEQIHAR+IKSG + N + NALISMYSRC N+E+AFQVF++ME
Sbjct: 480 FASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME 539
Query: 552 DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611
DRNVISWTS+ITGFAKHGFA +ALE+F+KML +G++PN +TYIAVLSACSH GL++EGWK
Sbjct: 540 DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWK 599
Query: 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671
HF+SMY EHG++ RMEHYACMVD+LGRSGSL+EA++FI SMP AD LVWRTFLGACRVH
Sbjct: 600 HFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVH 659
Query: 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731
G+ ELGKHAA+MI+EQ+P DPAA+ILLSNLYAS W+ V+NIRK MKE+NLIKEAGCSW
Sbjct: 660 GNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSW 719
Query: 732 IEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLF 791
+E +NKVHKF+VG+TSHPK EIY EL L++KIK+ GY+P+ +FVLH++EEEQK + LF
Sbjct: 720 VEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLF 779
Query: 792 QHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851
QHSEKIAVAFGLISTSK KPIRVFKNLR+CGDCH+AIKYISM TGREI++RD+NRFHHIK
Sbjct: 780 QHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIK 839
Query: 852 DGKCSCNDYW 861
DG+CSCN+YW
Sbjct: 840 DGRCSCNEYW 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/850 (66%), Positives = 690/850 (81%), Gaps = 4/850 (0%)
Query: 12 IPPPSSFKPSNPSRQNLPPSSSPPFIAQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQ 71
+P P++ K PS P F T PL+ RLI +N+GR+ KAI TL+ M
Sbjct: 4 LPLPTTLKIPFPSSNPSSSLQFPTF----TNPNPLTGRLIQEINNGRLHKAISTLEHMVH 59
Query: 72 KGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNE 131
+G+HPDL TYSL LK CIR+R+F +G LVH LT+S L+ +SV LNSLISLYSKCG +
Sbjct: 60 QGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEK 119
Query: 132 ANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACS 191
A IF+ MG+ RD++SWS+M+S + N A+ FV+M+E G+ PNEYCF+A RACS
Sbjct: 120 ATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179
Query: 192 NTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGW 251
E V++G I+GF++K GY SDVCVGC LIDMFVKG DL SA+KVF+KM E+N V W
Sbjct: 180 TAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTW 239
Query: 252 TLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIR 311
TLMITR Q G +AI LFLDMI SG+ PDRFTLSGV+SAC+ +EL G+QLHS AIR
Sbjct: 240 TLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIR 299
Query: 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKE 371
GL LD CVGC L++MYAKC+VDGS+ +RK+FD++LDHNV SWTA+ITGYVQ GG D+E
Sbjct: 300 HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEE 359
Query: 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLIS 431
A+ LF MI V PNHFTF+S LKAC NL + EQV+THAVK G + +CV NSLIS
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLIS 419
Query: 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT 491
MYARSGR++DARKAF+ LFEKNL+SYNT++DAYAKNLNSE+A EL +EIED G+G SA+T
Sbjct: 420 MYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFT 479
Query: 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
FASLLSGA+SIG IGKGEQIHAR+IKSG + N + NALISMYSRC N+E+AFQVF++ME
Sbjct: 480 FASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME 539
Query: 552 DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611
DRNVISWTS+ITGFAKHGFA +ALE+F+KML +G++PN +TYIAVLSACSH GL++EGWK
Sbjct: 540 DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWK 599
Query: 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671
HF+SMY EHG++ RMEHYAC+VD+LGRSGSL+EA++FI SMP AD LVWRTFLGACRVH
Sbjct: 600 HFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVH 659
Query: 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731
G+ ELGKHAA+MI+EQ+P DPAA+ILLSNLYAS W+ V+NIRK MKE+ LIKEAGCSW
Sbjct: 660 GNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSW 719
Query: 732 IEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLF 791
+E +NKVHKF+VG+TSHPK EIY EL L++KIK+ GY+P+ +FVLH++EEEQK + LF
Sbjct: 720 VEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLF 779
Query: 792 QHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851
QHSEKIAVAFGLISTSK KPIRVFKNLR+CGDCH+AIKYISM TGREI++RD+NRFHHIK
Sbjct: 780 QHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIK 839
Query: 852 DGKCSCNDYW 861
DG+CSCN+YW
Sbjct: 840 DGRCSCNEYW 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/723 (74%), Positives = 615/723 (85%)
Query: 139 MGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAI 198
MGNKRD+VSWS++IS Y N K +AI F +MLE GF PNEYCF+ V RACSN EN+++
Sbjct: 1 MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60
Query: 199 GHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRC 258
G II+GFLLK GYF+SDVCVGCALIDMFVKG+ DLESAYKVFD+M ++N V WTLMITR
Sbjct: 61 GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRF 120
Query: 259 TQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDV 318
QLG RDA+ LFLDM+LSG++PDRFTLSGVVSAC+E+ L + G+Q H +++GL LDV
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180
Query: 319 CVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSD 378
CVGCSLVDMYAKC DGSVDD+RKVFDRM HNVMSWTAIITGYVQSGG D+EA++LF +
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLE 240
Query: 379 MIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGR 438
M+QGQV PNHFTF+SVLKAC NL D + EQVY VK A +CVGNSLISMY+R G
Sbjct: 241 MVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGN 300
Query: 439 MEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498
ME+ARKAF+ LFEKNLVSYNT+V+AYAK+LNSE+AFEL +EIE G G +A+TFASLLSG
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360
Query: 499 ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISW 558
ASSIGAIGKGEQIH+RI+KSGF+SN I NALISMYSRC N+EAAFQVF EM D NVISW
Sbjct: 361 ASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISW 420
Query: 559 TSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYD 618
TSMITGFAKHGFA RALE F+KML G+ PN +TYIAVLSACSH GLISEG KHF+SM
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKV 480
Query: 619 EHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGK 678
EHGIV RMEHYAC+VDLLGRSG L EA+E + SMP AD LV RTFLGACRVHG+ +LGK
Sbjct: 481 EHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGK 540
Query: 679 HAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKV 738
HAAEMILEQDP DPAA+ILLSNL+ASAG WE VA IRK+MKERNL KEAGCSWIE +NKV
Sbjct: 541 HAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKV 600
Query: 739 HKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIA 798
HKF+VG+TSHP+ EIY ELDQLALKIKE GY+P T+FVLH++EEEQK QYLFQHSEKIA
Sbjct: 601 HKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIA 660
Query: 799 VAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCN 858
VA+G ISTS S+PIRVFKNLRVCGDCHTA KY S+V +EIVLRD+NRFHH KDG CSCN
Sbjct: 661 VAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCN 720
Query: 859 DYW 861
DYW
Sbjct: 721 DYW 723
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2261; Flags: Precursor gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana] gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana] gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/870 (61%), Positives = 670/870 (77%), Gaps = 31/870 (3%)
Query: 1 MMTLSLPAPAKIPPPSSFKPSNPSRQNLPPSSSPPFIAQPTTSEPLSNRLIY-HLNDGRV 59
M++ S P+PAK+P S +PS +R N +++RLI HLN G +
Sbjct: 3 MISFSFPSPAKLPIKS--QPSVSNRIN------------------VADRLILRHLNAGDL 42
Query: 60 QKAIFTLDLMTQKGNHP-DLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS 118
+ A+ LDLM + G P D T+S LLKSCIR+R+F LGKLVH+ L +EP+SV+ NS
Sbjct: 43 RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102
Query: 119 LISLYSKCGDLNEANKIFKSMG--NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGF 176
LISLYSK GD +A +F++M KRD+VSWS+M++ Y N G+++DAI +FVE LELG
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162
Query: 177 CPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESA 236
PN+YC++AVIRACSN++ V +G + GFL+K G+F+SDVCVGC+LIDMFVKG E+A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222
Query: 237 YKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSEL 296
YKVFDKM+E N V WTLMITRC Q+G PR+AIR FLDM+LSGF D+FTLS V SAC+EL
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282
Query: 297 ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT 356
E + GKQLHSWAIR+GL D V CSLVDMYAKC+ DGSVDD RKVFDRM DH+VMSWT
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340
Query: 357 AIITGYVQSGGRDKEAVKLFSDMI-QGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAV 415
A+ITGY+++ EA+ LFS+MI QG V PNHFTF+S KACGNL D V +QV A
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF 400
Query: 416 KRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475
KRG A + V NS+ISM+ +S RMEDA++AFESL EKNLVSYNT +D +NLN E+AF+
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 476 LLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535
LL EI + +G SA+TFASLLSG +++G+I KGEQIH++++K G N + NALISMYS
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520
Query: 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIA 595
+C +++ A +VF ME+RNVISWTSMITGFAKHGFA R LE F +M+ +G+KPN +TY+A
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580
Query: 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS 655
+LSACSH GL+SEGW+HF SMY++H I +MEHYACMVDLL R+G LT+A EFI +MP
Sbjct: 581 ILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ 640
Query: 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIR 715
ADVLVWRTFLGACRVH +TELGK AA ILE DP +PAA+I LSN+YA AG WE +R
Sbjct: 641 ADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMR 700
Query: 716 KRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTN 775
++MKERNL+KE GCSWIE +K+HKF+VG+T+HP +IY ELD+L +IK GY+PDT+
Sbjct: 701 RKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTD 760
Query: 776 FVLHEL----EEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYI 831
VLH+L +E +K + L+QHSEKIAVAFGLISTSKS+P+RVFKNLRVCGDCH A+KYI
Sbjct: 761 LVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYI 820
Query: 832 SMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
S V+GREIVLRD NRFHH KDGKCSCNDYW
Sbjct: 821 STVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/807 (64%), Positives = 631/807 (78%), Gaps = 14/807 (1%)
Query: 59 VQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS 118
++KAI LDL T L SLLLK+CIRS N LGKL+H L S L +SV+LNS
Sbjct: 24 LRKAISRLDLTTTS----PLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNS 79
Query: 119 LISLYSKCGDLNEANKIFKSMGN-KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG-- 175
LI+LYSKCGD A IF++MG+ KRD+VSWS++IS + N + A+ F+ ML+
Sbjct: 80 LITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRN 139
Query: 176 -FCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLE 234
PNEYCF+A++R+CSN G I+ FLLK GYFDS VCVGCALIDMF KG +D++
Sbjct: 140 IIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQ 199
Query: 235 SAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACS 294
SA VFDKM KN V WTLMITR +QLG DA+ LF +++S + PD+FTL+ ++SAC
Sbjct: 200 SARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259
Query: 295 ELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMS 354
ELE F+ GKQLHSW IR+GLA DV VGC+LVDMYAK +V++SRK+F+ ML HNVMS
Sbjct: 260 ELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAK---SAAVENSRKIFNTMLHHNVMS 316
Query: 355 WTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHA 414
WTA+I+GYVQS +++EA+KLF +M+ G V PN FTF+SVLKAC +L D + +Q++
Sbjct: 317 WTALISGYVQSR-QEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQT 375
Query: 415 VKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAF 474
+K G + +CVGNSLI+MYARSG ME ARKAF LFEKNL+SYNT DA AK L+S+++F
Sbjct: 376 IKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESF 435
Query: 475 ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534
HE+E TGVG S +T+A LLSGA+ IG I KGEQIHA I+KSGF +N CI NALISMY
Sbjct: 436 N--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMY 493
Query: 535 SRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYI 594
S+C N EAA QVF +M RNVI+WTS+I+GFAKHGFA +ALE+FY+ML G+KPN +TYI
Sbjct: 494 SKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYI 553
Query: 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPL 654
AVLSACSH GLI E WKHF SM+ H I RMEHYACMVDLLGRSG L EA+EFI SMP
Sbjct: 554 AVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPF 613
Query: 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714
AD LVWRTFLG+CRVH +T+LG+HAA+ ILE++P DPA +ILLSNLYAS G W+ VA +
Sbjct: 614 DADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAAL 673
Query: 715 RKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDT 774
RK MK++ LIKE G SWIE DN+VHKFHVG+TSHP+ +IY ELD+LALKIK GY+P+T
Sbjct: 674 RKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNT 733
Query: 775 NFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMV 834
+FVLH++E+EQK QYLFQHSEKIAVA+ LIST K KPIRVFKNLRVCGDCHTAIKYIS+V
Sbjct: 734 DFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIV 793
Query: 835 TGREIVLRDSNRFHHIKDGKCSCNDYW 861
TGREIV+RD+NRFHHIKDGKCSCNDYW
Sbjct: 794 TGREIVVRDANRFHHIKDGKCSCNDYW 820
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/817 (63%), Positives = 637/817 (77%), Gaps = 15/817 (1%)
Query: 55 NDGRVQKAIFTLDLMTQKGNHPD-LDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNS 113
N ++ KAI TL+L + H + L T SLLLK CIR++N HLGKL+H LT S L ++
Sbjct: 28 NPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDT 87
Query: 114 VILNSLISLYSKCGDLNEANKIFKSMGN-KRDIVSWSSMISSYVNRGKQVDAIHMFVEML 172
++LNSLI+LYSK D A IF+SM N KRD+VS+SS+IS + N + A+ MF ++L
Sbjct: 88 LLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLL 147
Query: 173 -ELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGS- 230
+ G PNEYCF+AVIRAC G ++GF+LK GYFDS VCVGC LIDMFVKG
Sbjct: 148 LQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCS 207
Query: 231 -VDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILS-GFLPDRFTLSG 288
DLESA KVFDKM EKN V WTLMITR Q G +AI LFL+M++S G++PDRFTL+G
Sbjct: 208 LADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTG 267
Query: 289 VVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML 348
++S C+E++ + GK+LHSW IR+GL LD+CVGCSLVDMYAKC G V ++RKVFD M
Sbjct: 268 LISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKC---GLVQEARKVFDGMR 324
Query: 349 DHNVMSWTAIITGYVQSGG-RDKEAVKLFSDMI-QGQVAPNHFTFASVLKACGNLLDSNV 406
+HNVMSWTA++ GYV+ GG ++EA+++FS+M+ QG VAPN FTF+ VLKAC +L D +
Sbjct: 325 EHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDF 384
Query: 407 AEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAK 466
EQV+ +K G + DCVGN L+S+YA+SGRME ARK F+ LFEKNLVS + D K
Sbjct: 385 GEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVK 444
Query: 467 --NLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNH 524
NLNSE+ +L E+E G G S++T+ASLLSGA+ IG IGKGEQIHA ++K GF ++
Sbjct: 445 DFNLNSEQ--DLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDL 502
Query: 525 CIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD 584
+ NALISMYS+C N EAA QVF +MED NVI+WTS+I GFAKHGFA++ALE+FY ML
Sbjct: 503 SVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLET 562
Query: 585 GIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644
G+KPN +TYIAVLSACSH GLI E WKHF SM D HGIV RMEHYACMVDLLGRSG L+E
Sbjct: 563 GVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSE 622
Query: 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704
A+EFI SMP AD LVWRTFLG+CRVH +T+LG+HAA+MILE++P DPA +ILLSNLYA+
Sbjct: 623 AIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYAT 682
Query: 705 AGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALK 764
G WE VA IRK MK++ + KEAG SWIE +N+VHKFHVG+T HPK +IY +LD+LALK
Sbjct: 683 EGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALK 742
Query: 765 IKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDC 824
IK GY+P+T+FVLH++E+EQK QYLFQHSEK+AVAF LIST KPIRVFKNLRVCGDC
Sbjct: 743 IKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDC 802
Query: 825 HTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
HTAIKYISMV+GREIV+RD+NRFHH+KDG CSCNDYW
Sbjct: 803 HTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/634 (77%), Positives = 547/634 (86%)
Query: 228 KGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLS 287
KGSV AYKVFDKM E+N V WTLMITR QLGC RDAI LFLDM LSG++PDRFT S
Sbjct: 1 KGSVIWAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 60
Query: 288 GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRM 347
V+SAC+EL L GKQLHS IR GLALDVCVGCSLVDMYAKC DGSVDDSRKVF++M
Sbjct: 61 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 120
Query: 348 LDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVA 407
+HNVMSWTAIIT Y QSG DKEA++LF MI G + PNHF+F+SVLKACGNL D
Sbjct: 121 PEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 180
Query: 408 EQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKN 467
EQVY++AVK G A +CVGNSLISMYARSGRMEDARKAF+ LFEKNLVSYN +VD YAKN
Sbjct: 181 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 240
Query: 468 LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIY 527
L SE+AF L +EI DTG+G SA+TFASLLSGA+SIGA+GKGEQIH R++K G++SN CI
Sbjct: 241 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCIC 300
Query: 528 NALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIK 587
NALISMYSRC N+EAAFQVF EMEDRNVISWTSMITGFAKHGFA RALE+F+KML G K
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 360
Query: 588 PNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647
PN ITY+AVLSACSH G+ISEG KHF SMY EHGIV RMEHYACMVDLLGRSG L EA+E
Sbjct: 361 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 420
Query: 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707
FI SMPL AD LVWRT LGACRVHG+TELG+HAAEMILEQ+P DPAA+ILLSNL+ASAG
Sbjct: 421 FINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQ 480
Query: 708 WEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767
W+ V IRK MKERNLIKEAGCSWIE +N+VH+FHVGETSHP+ +IY ELDQLA KIKE
Sbjct: 481 WKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 540
Query: 768 FGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTA 827
GY+PDT+FVLH++EEEQK Q+LFQHSEKIAVAFGLISTS+SKPIR+FKNLRVCGDCHTA
Sbjct: 541 MGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTA 600
Query: 828 IKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
IKYISM TGREIV+RDSNRFHHIK+G CSCNDYW
Sbjct: 601 IKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/626 (78%), Positives = 543/626 (86%)
Query: 236 AYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSE 295
AYKVFDKM E+N V WTLMITR QLGC RDAI LFLDM LSG++PDRFT S V+SAC+E
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSW 355
L L GKQLHS IR GLALDVCVGCSLVDMYAKC DGSVDDSRKVF++M +HNVMSW
Sbjct: 64 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123
Query: 356 TAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAV 415
TAIIT Y QSG DKEA++LF MI G + PNHF+F+SVLKACGNL D EQVY++AV
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183
Query: 416 KRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475
K G A +CVGNSLISMYARSGRMEDARKAF+ LFEKNLVSYN +VD YAKNL SE+AF
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243
Query: 476 LLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535
L +EI DTG+G SA+TFASLLSGA+SIGA+GKGEQIH R++K G++SN CI NALISMYS
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303
Query: 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIA 595
RC N+EAAFQVF EMEDRNVISWTSMITGFAKHGFA RALE+F+KML G KPN ITY+A
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363
Query: 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS 655
VLSACSH G+ISEG KHF SMY EHGIV RMEHYACMVDLLGRSG L EA+EFI SMPL
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423
Query: 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIR 715
AD LVWRT LGACRVHG+TELG+HAAEMILEQ+P DPAA+ILLSNL+ASAG W+ V IR
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 483
Query: 716 KRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTN 775
K MKERNLIKEAGCSWIE +N+VH+FHVGETSHP+ +IY ELDQLA KIKE GY+PDT+
Sbjct: 484 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 543
Query: 776 FVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVT 835
FVLH++EEEQK Q+LFQHSEKIAVAFGLISTS+SKPIR+FKNLRVCGDCHTAIKYISM T
Sbjct: 544 FVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMAT 603
Query: 836 GREIVLRDSNRFHHIKDGKCSCNDYW 861
GREIV+RDSNRFHHIK+G CSCNDYW
Sbjct: 604 GREIVVRDSNRFHHIKNGVCSCNDYW 629
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 861 | ||||||
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.967 | 0.98 | 0.620 | 2.2e-286 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.922 | 0.914 | 0.364 | 4.6e-144 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.938 | 0.812 | 0.362 | 1.4e-142 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.907 | 0.734 | 0.351 | 1.3e-141 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.954 | 0.923 | 0.353 | 5.5e-141 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.931 | 0.855 | 0.341 | 6.3e-140 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.893 | 0.950 | 0.367 | 1e-139 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.901 | 0.890 | 0.350 | 7.2e-139 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.917 | 0.797 | 0.362 | 9.2e-139 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.504 | 0.552 | 0.455 | 2.4e-138 |
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2751 (973.5 bits), Expect = 2.2e-286, P = 2.2e-286
Identities = 525/846 (62%), Positives = 650/846 (76%)
Query: 27 NLPPSSSPPFIAQPTTSEPLS--NRLIY-HLNDGRVQKAIFTLDLMTQKGNHP-DLDTYS 82
+ P + P +QP+ S ++ +RLI HLN G ++ A+ LDLM + G P D T+S
Sbjct: 7 SFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFS 66
Query: 83 LLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGN- 141
LLKSCIR+R+F LGKLVH+ L +EP+SV+ NSLISLYSK GD +A +F++M
Sbjct: 67 SLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRF 126
Query: 142 -KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGH 200
KRD+VSWS+M++ Y N G+++DAI +FVE LELG PN+YC++AVIRACSN++ V +G
Sbjct: 127 GKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR 186
Query: 201 IIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQ 260
+ GFL+K G+F+SDVCVGC+LIDMFVKG E+AYKVFDKM+E N V WTLMITRC Q
Sbjct: 187 VTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQ 246
Query: 261 LGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCV 320
+G PR+AIR FLDM+LSGF D+FTLS V SAC+ELE + GKQLHSWAIR+GL DV
Sbjct: 247 MGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV-- 304
Query: 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMI 380
CSLVDMYAKC+ DGSVDD RKVFDRM DH+VMSWTA+ITGY+++ EA+ LFS+MI
Sbjct: 305 ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMI 364
Query: 381 -QGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRM 439
QG V PNHFTF+S KACGNL D V +QV A KRG A + V NS+ISM+ +S RM
Sbjct: 365 TQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRM 424
Query: 440 EDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFXXXXXXX 499
EDA++AFESL EKNLVSYNT +D +NLN E+AF+LL EI + +G SA+TF
Sbjct: 425 EDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGV 484
Query: 500 XXXXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWT 559
KGEQIH++++K G N + NALISMYS+C +++ A +VF ME+RNVISWT
Sbjct: 485 ANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWT 544
Query: 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619
SMITGFAKHGFA R LE F +M+ +G+KPN +TY+A+LSACSH GL+SEGW+HF SMY++
Sbjct: 545 SMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYED 604
Query: 620 HGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKH 679
H I +MEHYACMVDLL R+G LT+A EFI +MP ADVLVWRTFLGACRVH +TELGK
Sbjct: 605 HKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKL 664
Query: 680 AAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVH 739
AA ILE DP +PAA+I LSN+YA AG WE +R++MKERNL+KE GCSWIE +K+H
Sbjct: 665 AARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIH 724
Query: 740 KFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEE----QKVQYLFQHSE 795
KF+VG+T+HP +IY ELD+L +IK GY+PDT+ VLH+LEEE +K + L+QHSE
Sbjct: 725 KFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSE 784
Query: 796 KIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKC 855
KIAVAFGLISTSKS+P+RVFKNLRVCGDCH A+KYIS V+GREIVLRD NRFHH KDGKC
Sbjct: 785 KIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKC 844
Query: 856 SCNDYW 861
SCNDYW
Sbjct: 845 SCNDYW 850
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1408 (500.7 bits), Expect = 4.6e-144, P = 4.6e-144
Identities = 295/810 (36%), Positives = 473/810 (58%)
Query: 56 DGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVI 115
DGR Q+A + + G D +S +LK + G+ +H + + +
Sbjct: 71 DGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSV 130
Query: 116 LNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG 175
SL+ Y K + + K+F M +R++V+W+++IS Y + + +F+ M G
Sbjct: 131 GTSLVDTYMKGSNFKDGRKVFDEM-KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG 189
Query: 176 FCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVK-GSVDLE 234
PN + F+A + + G ++ ++K G D + V +LI++++K G+V
Sbjct: 190 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG-LDKTIPVSNSLINLYLKCGNV--R 246
Query: 235 SAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACS 294
A +FDK K+ V W MI+ G +A+ +F M L+ + + V+ C+
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306
Query: 295 ELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRM-LDHNVM 353
L+ +QLH ++ G D + +L+ Y+KCT ++ D+ ++F + NV+
Sbjct: 307 NLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT---AMLDALRLFKEIGCVGNVV 363
Query: 354 SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTH 413
SWTA+I+G++Q+ G++ EAV LFS+M + V PN FT++ +L A + S V QV
Sbjct: 364 SWTAMISGFLQNDGKE-EAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQV--- 419
Query: 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKA 473
VK VG +L+ Y + G++E+A K F + +K++V+++ M+ YA+ +E A
Sbjct: 420 -VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 474 FELLHEIEDTGVGTSAYTFXXXXXX-XXXXXXXXKGEQIHARIIKSGFESNHCIYNALIS 532
++ E+ G+ + +TF +G+Q H IKS +S+ C+ +AL++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 533 MYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592
MY++ N+E+A +VFK +++++SW SMI+G+A+HG A +AL++F +M +K +G+T
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652
+I V +AC+HAGL+ EG K+F M + I EH +CMVDL R+G L +A++ I +M
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
Query: 653 PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712
P A +WRT L ACRVH TELG+ AAE I+ P+D AA++LLSN+YA +G W+ A
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERA 718
Query: 713 NIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLP 772
+RK M ERN+ KE G SWIE NK + F G+ SHP +IY +L+ L+ ++K+ GY P
Sbjct: 719 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778
Query: 773 DTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYIS 832
DT++VL ++++E K L QHSE++A+AFGLI+T K P+ + KNLRVCGDCH IK I+
Sbjct: 779 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIA 838
Query: 833 MVTGREIVLRDSNRFHHIK-DGKCSCNDYW 861
+ REIV+RDSNRFHH DG CSC D+W
Sbjct: 839 KIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 300/827 (36%), Positives = 479/827 (57%)
Query: 48 NRLIYHLNDGRVQKAIFTL-DLMTQKGNHPDLDTY-SLLLKSC-IRSRNFHLGKLVHSLL 104
N +I + Q++ F + M G+ P T+ SL+ +C + + L + + +
Sbjct: 175 NSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTI 234
Query: 105 TRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDA 164
+S L + + + L+S ++K G L+ A K+F M R+ V+ + ++ V + +A
Sbjct: 235 QKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQM-ETRNAVTLNGLMVGLVRQKWGEEA 293
Query: 165 IHMFVEMLEL-GFCPNEYCFS-AVIRACSNTENVAI--GHIIYGFLLKCGYFDSDVCVGC 220
+F++M + P Y + S E V + G ++G ++ G D V +G
Sbjct: 294 TKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGN 353
Query: 221 ALIDMFVK-GSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGF 279
L++M+ K GS+ A +VF MT+K++V W MIT Q GC +A+ + M
Sbjct: 354 GLVNMYAKCGSI--ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411
Query: 280 LPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDD 339
LP FTL +S+C+ L+ G+Q+H +++ G+ L+V V +L+ +YA+ G +++
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET---GYLNE 468
Query: 340 SRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACG 399
RK+F M +H+ +SW +II +S EAV F + + N TF+SVL A
Sbjct: 469 CRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVS 528
Query: 400 NLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK-NLVSYN 458
+L + +Q++ A+K A + N+LI+ Y + G M+ K F + E+ + V++N
Sbjct: 529 SLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWN 588
Query: 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFXXXXXXXXXXXXXXKGEQIHARIIKS 518
+M+ Y N KA +L+ + TG ++ + +G ++HA +++
Sbjct: 589 SMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRA 648
Query: 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIF 578
ES+ + +AL+ MYS+C ++ A + F M RN SW SMI+G+A+HG AL++F
Sbjct: 649 CLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLF 708
Query: 579 YKMLADG-IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG 637
M DG P+ +T++ VLSACSHAGL+ EG+KHF SM D +G+ R+EH++CM D+LG
Sbjct: 709 ETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLG 768
Query: 638 RSGSLTEALEFIRSMPLSADVLVWRTFLGAC-RVHG-DTELGKHAAEMILEQDPQDPAAH 695
R+G L + +FI MP+ +VL+WRT LGAC R +G ELGK AAEM+ + +P++ +
Sbjct: 769 RAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNY 828
Query: 696 ILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIY 755
+LL N+YA+ G WE + RK+MK+ ++ KEAG SW+ + VH F G+ SHP IY
Sbjct: 829 VLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIY 888
Query: 756 AELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLIST-SKSKPIRV 814
+L +L K+++ GY+P T F L++LE+E K + L HSEK+AVAF L + S + PIR+
Sbjct: 889 KKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRI 948
Query: 815 FKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
KNLRVCGDCH+A KYIS + GR+I+LRDSNRFHH +DG CSC+D+W
Sbjct: 949 MKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
Identities = 278/790 (35%), Positives = 458/790 (57%)
Query: 73 GNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEA 132
G P +S +L +C + + +G+ +H L+ + ++ + N+L+SLY G+L A
Sbjct: 283 GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISA 342
Query: 133 NKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192
IF +M ++RD V+++++I+ G A+ +F M G P+ ++++ ACS
Sbjct: 343 EHIFSNM-SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Query: 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWT 252
+ G ++ + K G+ ++ G AL++++ K D+E+A F + +N V W
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAK-CADIETALDYFLETEVENVVLWN 459
Query: 253 LMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRT 312
+M+ L R++ R+F M + +P+++T ++ C L G+Q+HS I+T
Sbjct: 460 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519
Query: 313 GLALDVCVGCS-LVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKE 371
L+ V CS L+DMYAK G +D + + R +V+SWT +I GY Q DK
Sbjct: 520 NFQLNAYV-CSVLIDMYAKL---GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK- 574
Query: 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLIS 431
A+ F M+ + + + + AC L +Q++ A G + D N+L++
Sbjct: 575 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 634
Query: 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT 491
+Y+R G++E++ AFE + +++N +V + ++ N+E+A + + G+ + +T
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694
Query: 492 FXXXXXXXXXXXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
F +G+Q+HA I K+G++S + NALISMY++C ++ A + F E+
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVS 754
Query: 552 DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611
+N +SW ++I ++KHGF + AL+ F +M+ ++PN +T + VLSACSH GL+ +G
Sbjct: 755 TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 814
Query: 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671
+F SM E+G+ + EHY C+VD+L R+G L+ A EFI+ MP+ D LVWRT L AC VH
Sbjct: 815 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 874
Query: 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731
+ E+G+ AA +LE +P+D A ++LLSNLYA + W+ R++MKE+ + KE G SW
Sbjct: 875 KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSW 934
Query: 732 IEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLF 791
IE N +H F+VG+ +HP EI+ L + E GY+ D +L+EL+ EQK +F
Sbjct: 935 IEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIF 994
Query: 792 QHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851
HSEK+A++FGL+S + PI V KNLRVC DCH IK++S V+ REI++RD+ RFHH +
Sbjct: 995 IHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFE 1054
Query: 852 DGKCSCNDYW 861
G CSC DYW
Sbjct: 1055 GGACSCKDYW 1064
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 301/851 (35%), Positives = 492/851 (57%)
Query: 31 SSSPP-FIAQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCI 89
S +P FI+Q + E + L + +++A+ T M G PD + LLK+
Sbjct: 49 SGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108
Query: 90 RSRNFHLGKLVHSLLTRSKLEPNSV-ILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSW 148
++ LGK +H+ + + +SV + N+L++LY KCGD K+F + ++R+ VSW
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI-SERNQVSW 167
Query: 149 SSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNT---ENVAIGHIIYGF 205
+S+ISS + K A+ F ML+ P+ + +V+ ACSN E + +G ++ +
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 206 LLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPR 265
L+ G +S + L+ M+ K L S+ + ++ V W +++ Q
Sbjct: 228 GLRKGELNSFIIN--TLVAMYGKLG-KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284
Query: 266 DAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDV--CVGCS 323
+A+ +M+L G PD FT+S V+ ACS LE+ +GK+LH++A++ G +LD VG +
Sbjct: 285 EALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSA 343
Query: 324 LVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ 383
LVDMY C V R+VFD M D + W A+I GY Q+ DKEA+ LF M +
Sbjct: 344 LVDMYCNCK---QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE-HDKEALLLFIGMEESA 399
Query: 384 -VAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDA 442
+ N T A V+ AC + E ++ VKRG D V N+L+ MY+R G+++ A
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459
Query: 443 RKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIED----TGVGTS-------AYT 491
+ F + +++LV++NTM+ Y + + E A LLH++++ G S + T
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519
Query: 492 FXXXXXXXXXXXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
KG++IHA IK+ ++ + +AL+ MY++C ++ + +VF ++
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 552 DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611
+NVI+W +I + HG A+++ M+ G+KPN +T+I+V +ACSH+G++ EG +
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVL-VWRTFLGACRV 670
F M ++G+ +HYAC+VDLLGR+G + EA + + MP + W + LGA R+
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 671 HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCS 730
H + E+G+ AA+ +++ +P + ++LL+N+Y+SAG W+ +R+ MKE+ + KE GCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYL 790
WIE ++VHKF G++SHP++ ++ L+ L ++++ GY+PDT+ VLH +EE++K L
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819
Query: 791 FQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHI 850
HSEK+A+AFG+++TS IRV KNLRVC DCH A K+IS + REI+LRD RFH
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRF 879
Query: 851 KDGKCSCNDYW 861
K+G CSC DYW
Sbjct: 880 KNGTCSCGDYW 890
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 279/816 (34%), Positives = 469/816 (57%)
Query: 50 LIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKL 109
++ + + G ++ I M +G + ++ SL++ SC ++ LG+ + + +S L
Sbjct: 132 MVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGL 191
Query: 110 EPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFV 169
E + NSLIS+ G+++ AN IF M ++RD +SW+S+ ++Y G ++ +F
Sbjct: 192 ESKLAVENSLISMLGSMGNVDYANYIFDQM-SERDTISWNSIAAAYAQNGHIEESFRIFS 250
Query: 170 EMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKG 229
M N S ++ + ++ G I+G ++K G FDS VCV L+ M+
Sbjct: 251 LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLRMYAGA 309
Query: 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGV 289
+E A VF +M K+ + W ++ G DA+ L MI SG + T +
Sbjct: 310 GRSVE-ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSA 368
Query: 290 VSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD 349
++AC + F G+ LH + +GL + +G +LV MY K G + +SR+V +M
Sbjct: 369 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI---GEMSESRRVLLQMPR 425
Query: 350 HNVMSWTAIITGYVQSGGRDKEAVKLFSDM-IQGQVAPNHFTFASVLKAC---GNLLDSN 405
+V++W A+I GY + DK A+ F M ++G V+ N+ T SVL AC G+LL+
Sbjct: 426 RDVVAWNALIGGYAEDEDPDK-ALAAFQTMRVEG-VSSNYITVVSVLSACLLPGDLLERG 483
Query: 406 VAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYA 465
+ ++ + V G D+ V NSLI+MYA+ G + ++ F L +N++++N M+ A A
Sbjct: 484 --KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANA 541
Query: 466 KNLNSEKAFELLHEIEDTGVGTSAYTFXXXXXXXXXXXXXXKGEQIHARIIKSGFESNHC 525
+ + E+ +L+ ++ GV ++F +G+Q+H +K GFE +
Sbjct: 542 HHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSF 601
Query: 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADG 585
I+NA MYS+C + ++ +R++ SW +I+ +HG+ F++ML G
Sbjct: 602 IFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMG 661
Query: 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645
IKP +T++++L+ACSH GL+ +G ++ + + G+ +EH C++DLLGRSG L EA
Sbjct: 662 IKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEA 721
Query: 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705
FI MP+ + LVWR+ L +C++HG+ + G+ AAE + + +P+D + ++L SN++A+
Sbjct: 722 ETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATT 781
Query: 706 GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKI 765
G WE V N+RK+M +N+ K+ CSW++ +KV F +G+ +HP+T+EIYA+L+ + I
Sbjct: 782 GRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLI 841
Query: 766 KEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCH 825
KE GY+ DT+ L + +EEQK L+ HSE++A+A+ L+ST + +R+FKNLR+C DCH
Sbjct: 842 KESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCH 901
Query: 826 TAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
+ K++S V GR IVLRD RFHH + G CSC DYW
Sbjct: 902 SVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 287/780 (36%), Positives = 439/780 (56%)
Query: 82 SLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGN 141
+LLL+ C + + + L+ ++ L L+SL+ + G ++EA ++F+ + +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97
Query: 142 KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHI 201
K +++ + +M+ + A+ FV M P Y F+ +++ C + + +G
Sbjct: 98 KLNVL-YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 202 IYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQL 261
I+G L+K G F D+ L +M+ K + A KVFD+M E++ V W ++ +Q
Sbjct: 157 IHGLLVKSG-FSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVAGYSQN 214
Query: 262 GCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVG 321
G R A+ + M P T+ V+ A S L L + GK++H +A+R+G V +
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS 274
Query: 322 CSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQ 381
+LVDMYAKC GS++ +R++FD ML+ NV+SW ++I YVQ+ KEA+ +F M+
Sbjct: 275 TALVDMYAKC---GSLETARQLFDGMLERNVVSWNSMIDAYVQNEN-PKEAMLIFQKMLD 330
Query: 382 GQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED 441
V P + L AC +L D ++ +V+ G + V NSLISMY + ++
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390
Query: 442 ARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFXXXXXXXXX 501
A F L + LVS+N M+ +A+N A ++ V +T+
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450
Query: 502 XXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSM 561
+ IH +++S + N + AL+ MY++C + A +F M +R+V +W +M
Sbjct: 451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM 510
Query: 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621
I G+ HGF ALE+F +M IKPNG+T+++V+SACSH+GL+ G K F M + +
Sbjct: 511 IDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYS 570
Query: 622 IVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681
I M+HY MVDLLGR+G L EA +FI MP+ V V+ LGAC++H + + AA
Sbjct: 571 IELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAA 630
Query: 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKF 741
E + E +P D H+LL+N+Y +A WE V +R M + L K GCS +E N+VH F
Sbjct: 631 ERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690
Query: 742 HVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAF 801
G T+HP + +IYA L++L IKE GY+PDTN VL +E + K Q L HSEK+A++F
Sbjct: 691 FSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLG-VENDVKEQLLSTHSEKLAISF 749
Query: 802 GLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
GL++T+ I V KNLRVC DCH A KYIS+VTGREIV+RD RFHH K+G CSC DYW
Sbjct: 750 GLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
Identities = 277/790 (35%), Positives = 463/790 (58%)
Query: 77 DLDTYSL--LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANK 134
D+D +L +L+ C S++ GK V + + + +S + + L +Y+ CGDL EA++
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 135 IFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTE 194
+F + ++ + W+ +++ G +I +F +M+ G + Y FS V ++ S+
Sbjct: 151 VFDEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209
Query: 195 NVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLM 254
+V G ++GF+LK G+ + + VG +L+ ++K ++SA KVFD+MTE++ + W +
Sbjct: 210 SVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSI 267
Query: 255 ITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGL 314
I G + +F+ M++SG D T+ V + C++ L + G+ +HS ++
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327
Query: 315 ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVK 374
+ + +L+DMY+KC G +D ++ VF M D +V+S+T++I GY + G EAVK
Sbjct: 328 SREDRFCNTLLDMYSKC---GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAG-EAVK 383
Query: 375 LFSDMIQGQVAPNHFTFASVLKACGN--LLDSNVAEQVYTHAVKRGRALDDCVGNSLISM 432
LF +M + ++P+ +T +VL C LLD ++V+ + D V N+L+ M
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG--KRVHEWIKENDLGFDIFVSNALMDM 441
Query: 433 YARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEI-EDTGVGTSAYT 491
YA+ G M++A F + K+++S+NT++ Y+KN + +A L + + E+ T
Sbjct: 442 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 501
Query: 492 FXXXXXXXXXXXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
KG +IH I+++G+ S+ + N+L+ MY++C + A +F ++
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA 561
Query: 552 DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611
++++SWT MI G+ HGF A+ +F +M GI+ + I+++++L ACSH+GL+ EGW+
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWR 621
Query: 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671
F M E I +EHYAC+VD+L R+G L +A FI +MP+ D +W L CR+H
Sbjct: 622 FFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIH 681
Query: 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731
D +L + AE + E +P++ ++L++N+YA A WE V +RKR+ +R L K GCSW
Sbjct: 682 HDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSW 741
Query: 732 IEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLF 791
IE +V+ F G++S+P+T I A L ++ ++ E GY P T + L + EE +K + L
Sbjct: 742 IEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALC 801
Query: 792 QHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851
HSEK+A+A G+IS+ K IRV KNLRVCGDCH K++S +T REIVLRDSNRFH K
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861
Query: 852 DGKCSCNDYW 861
DG CSC +W
Sbjct: 862 DGHCSCRGFW 871
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
Identities = 297/820 (36%), Positives = 472/820 (57%)
Query: 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCI----RSRNFHLGKLVHSLLTRSK 108
+L G+V++ + M + D+ ++L+LK+ + + L HS S
Sbjct: 190 YLKFGKVKEGKVLFEEMPYR----DVVLWNLMLKAYLEMGFKEEAIDLSSAFHS----SG 241
Query: 109 LEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMI------SSYVNRGKQV 162
L PN + L L + GD ++A ++ KS N D S S +I S Y++ G+
Sbjct: 242 LNPNEITLRLLARI---SGDDSDAGQV-KSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297
Query: 163 DAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCAL 222
+ F +M+E ++ F ++ +++A+G ++ LK G D + V +L
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG-LDLMLTVSNSL 356
Query: 223 IDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPD 282
I+M+ K A VFD M+E++ + W +I Q G +A+ LF+ ++ G PD
Sbjct: 357 INMYCKLR-KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415
Query: 283 RFTLSGVVSACSEL-ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSR 341
++T++ V+ A S L E + KQ+H AI+ D V +L+D Y++ + + ++
Sbjct: 416 QYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR---NRCMKEAE 472
Query: 342 KVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNL 401
+F+R + ++++W A++ GY QS K +KLF+ M + + FT A+V K CG L
Sbjct: 473 ILFERH-NFDLVAWNAMMAGYTQSHDGHK-TLKLFALMHKQGERSDDFTLATVFKTCGFL 530
Query: 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMV 461
N +QV+ +A+K G LD V + ++ MY + G M A+ AF+S+ + V++ TM+
Sbjct: 531 FAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 462 DAYAKNLNSEKAFELLHEIEDTGVGTSAYTFXXXXXXXXXXXXXXKGEQIHARIIKSGFE 521
+N E+AF + ++ GV +T +G QIHA +K
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650
Query: 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKM 581
++ + +L+ MY++C +++ A+ +FK +E N+ +W +M+ G A+HG L++F +M
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM 710
Query: 582 LADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641
+ GIKP+ +T+I VLSACSH+GL+SE +KH RSM+ ++GI +EHY+C+ D LGR+G
Sbjct: 711 KSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGL 770
Query: 642 LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701
+ +A I SM + A ++RT L ACRV GDTE GK A +LE +P D +A++LLSN+
Sbjct: 771 VKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNM 830
Query: 702 YASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQL 761
YA+A W+ + R MK + K+ G SWIE NK+H F V + S+ +T IY ++ +
Sbjct: 831 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDM 890
Query: 762 ALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVC 821
IK+ GY+P+T+F L ++EEE+K + L+ HSEK+AVAFGL+ST S PIRV KNLRVC
Sbjct: 891 IRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVC 950
Query: 822 GDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
GDCH A+KYI+ V REIVLRD+NRFH KDG CSC DYW
Sbjct: 951 GDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 2.4e-138, Sum P(3) = 2.4e-138
Identities = 198/435 (45%), Positives = 281/435 (64%)
Query: 428 SLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGT 487
+L+ Y + G M A+ F SL ++++V++ M+ Y ++ + +A L + G
Sbjct: 352 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP 411
Query: 488 SAYTFXXXXXXXXXXXXXXKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVF 547
++YT G+QIH +KSG + + NALI+MY++ N+ +A + F
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 548 KEME-DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606
+ +R+ +SWTSMI A+HG A ALE+F ML +G++P+ ITY+ V SAC+HAGL+
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLG 666
++G ++F M D I+ + HYACMVDL GR+G L EA EFI MP+ DV+ W + L
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLS 591
Query: 667 ACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKE 726
ACRVH + +LGK AAE +L +P++ A+ L+NLY++ G WE A IRK MK+ + KE
Sbjct: 592 ACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKE 651
Query: 727 AGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQK 786
G SWIE +KVH F V + +HP+ EIY + ++ +IK+ GY+PDT VLH+LEEE K
Sbjct: 652 QGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVK 711
Query: 787 VQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNR 846
Q L HSEK+A+AFGLIST +R+ KNLRVC DCHTAIK+IS + GREI++RD+ R
Sbjct: 712 EQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTR 771
Query: 847 FHHIKDGKCSCNDYW 861
FHH KDG CSC DYW
Sbjct: 772 FHHFKDGFCSCRDYW 786
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5G1T1 | PP272_ARATH | No assigned EC number | 0.6183 | 0.9744 | 0.9870 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 861 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-163 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-63 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-28 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 294/869 (33%), Positives = 478/869 (55%), Gaps = 35/869 (4%)
Query: 13 PPPSSFKPSNPS----------RQNLPPSS----------SPPFIAQPTTSEPLSNRLIY 52
PP + LP + S + +T + +++L
Sbjct: 2 QPPHFYLNPGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDS-NSQLRA 60
Query: 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPN 112
+ G++++A+ L+ M + D D Y L + C R G V S S
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 113 SVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEML 172
+ N+++S++ + G+L A +F M +RD+ SW+ ++ Y G +A+ ++ ML
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 173 ELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVD 232
G P+ Y F V+R C ++A G ++ +++ G F+ DV V ALI M+VK D
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCG-D 237
Query: 233 LESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSA 292
+ SA VFD+M ++ + W MI+ + G + + LF M PD T++ V+SA
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNV 352
C L G+++H + ++TG A+DV V SL+ MY GS ++ KVF RM +
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDA 354
Query: 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYT 412
+SWTA+I+GY ++G DK A++ ++ M Q V+P+ T ASVL AC L D +V +++
Sbjct: 355 VSWTAMISGYEKNGLPDK-ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 413 HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEK 472
A ++G V N+LI MY++ ++ A + F ++ EK+++S+ +++ N +
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 473 AFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALIS 532
A ++ T + ++ T + LS + IGA+ G++IHA ++++G + + NAL+
Sbjct: 474 ALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532
Query: 533 MYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592
+Y RC + A+ F E ++V+SW ++TG+ HG + A+E+F +M+ G+ P+ +T
Sbjct: 533 LYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652
+I++L ACS +G++++G ++F SM +++ I ++HYAC+VDLLGR+G LTEA FI M
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 653 PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712
P++ D VW L ACR+H ELG+ AA+ I E DP +ILL NLYA AG W+ VA
Sbjct: 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711
Query: 713 NIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLP 772
+RK M+E L + GCSW+E KVH F + SHP+ EI L+ K+K G
Sbjct: 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL-- 769
Query: 773 DTNFVLHELEEEQ--KVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKY 830
++E + K HSE++A+AFGLI+T PI V KNL +C +CH +K+
Sbjct: 770 -AGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKF 828
Query: 831 ISMVTGREIVLRDSNRFHHIKDGKCSCND 859
IS + REI +RD+ +FHH KDG+CSC D
Sbjct: 829 ISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 490 bits (1264), Expect = e-163
Identities = 222/578 (38%), Positives = 347/578 (60%), Gaps = 6/578 (1%)
Query: 285 TLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVF 344
T +V AC L+ K ++ +G D + ++ M+ KC G + D+R++F
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLF 181
Query: 345 DRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS 404
D M + N+ SW II G V +G +EA LF +M + TF +L+A L +
Sbjct: 182 DEMPERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 405 NVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAY 464
+Q++ +K G D V +LI MY++ G +EDAR F+ + EK V++N+M+ Y
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 465 AKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNH 524
A + SE+A L +E+ D+GV +TF+ ++ S + + +Q HA +I++GF +
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 525 CIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD 584
AL+ +YS+ +E A VF M +N+ISW ++I G+ HG +A+E+F +M+A+
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 585 GIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644
G+ PN +T++AVLSAC ++GL +GW+ F+SM + H I R HYACM++LLGR G L E
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704
A IR P V +W L ACR+H + ELG+ AAE + P+ +++L NLY S
Sbjct: 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 705 AGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALK 764
+G A + + +K + L C+WIE + H F G+ HP++ EIY +LD+L +
Sbjct: 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600
Query: 765 IKEFGYLPDTNFVLHE-LEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGD 823
I E+GY+ + N +L + E+E+KV + HSEK+A+AFGLI+TS+ P+++ ++ R+C D
Sbjct: 601 ISEYGYVAEENELLPDVDEDEEKVSGRY-HSEKLAIAFGLINTSEWTPLQITQSHRICKD 659
Query: 824 CHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861
CH IK+I++VT REIV+RD++RFHH K GKCSC DYW
Sbjct: 660 CHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 3e-63
Identities = 119/322 (36%), Positives = 176/322 (54%), Gaps = 7/322 (2%)
Query: 77 DLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIF 136
TY L+++CI ++ K V+ + S EP+ ++N ++ ++ KCG L +A ++F
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 137 KSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENV 196
M +R++ SW ++I V+ G +A +F EM E G F ++RA + +
Sbjct: 182 DEM-PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 197 AIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMIT 256
G ++ +LK G D V CALIDM+ K D+E A VFD M EK TV W M+
Sbjct: 241 RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAWNSMLA 298
Query: 257 RCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLAL 316
G +A+ L+ +M SG D+FT S ++ S L L KQ H+ IRTG L
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358
Query: 317 DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLF 376
D+ +LVD+Y+K G ++D+R VFDRM N++SW A+I GY GR +AV++F
Sbjct: 359 DIVANTALVDLYSKW---GRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMF 414
Query: 377 SDMIQGQVAPNHFTFASVLKAC 398
MI VAPNH TF +VL AC
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 99/413 (23%), Positives = 177/413 (42%), Gaps = 65/413 (15%)
Query: 54 LNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNS 113
++ G ++A M + G+ + T+ ++L++ + G+ +H + ++ + ++
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 114 VILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLE 173
+ +LI +YSKCGD+ +A +F M K V+W+SM++ Y G +A+ ++ EM +
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 174 LGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVK-GSVD 232
G +++ FS +IR S + + L++ G F D+ AL+D++ K G +
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRM- 376
Query: 233 LESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSA 292
E A VFD+M KN + W +I G A+ +F MI G P+ T V+SA
Sbjct: 377 -EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML-DHN 351
C G + ++F M +H
Sbjct: 436 CR--------------------------------------YSGLSEQGWEIFQSMSENHR 457
Query: 352 V----MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKAC---GNL-LD 403
+ M + +I + G D EA + P +A++L AC NL L
Sbjct: 458 IKPRAMHYACMIELLGREGLLD-EAYAMIRR---APFKPTVNMWAALLTACRIHKNLELG 513
Query: 404 SNVAEQVYTHAVKRGRALDDCVGN--SLISMYARSGRMEDARKAFESLFEKNL 454
AE++Y ++ + N L+++Y SGR +A K E+L K L
Sbjct: 514 RLAAEKLYGMGPEK-------LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 23/131 (17%)
Query: 728 GCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEE--- 784
GC W E K G+ SHP + E +L +IK G +P+T + H+++ E
Sbjct: 2 GCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 785 ---QKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNL-RVCGDCHTAIKYISMVTGREIV 840
K + L H+EK A+A+GL++T R+ K L R+CGDCH +YI+ TGREI+
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 841 LRDSNRFHHIK 851
+RD +RFHH K
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-18
Identities = 79/333 (23%), Positives = 144/333 (43%), Gaps = 53/333 (15%)
Query: 367 GRDKEAVKLFSDMIQ-GQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCV 425
GR K+ + L DM + G + + A KAC K+ RA+ +
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-----------------KKQRAVKEAF 426
Query: 426 G-------------NSLISMYARSGRMEDARKAF----ESLFEKNLVSYNTMVDAYAKNL 468
N L+S+ A S ++ A + E+ + + Y T++ AK+
Sbjct: 427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 469 NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYN 528
+ FE+ HE+ + GV + +TF +L+ G + G + K + + + + ++N
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 529 ALISMYSRCANVEAAFQVFKEME------DRNVISWTSMITGFAKHGFAARALEIFYKML 582
ALIS + V+ AF V EM+ D + I+ +++ A G RA E+ Y+M+
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV-YQMI 605
Query: 583 AD-GIKPNGITYIAVLSACSHAGLISEGWKHFRSMYD---EHGIVQRMEHYACMVDLLGR 638
+ IK Y +++CS G W S+YD + G+ ++ +VD+ G
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKG----DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 639 SGSLTEALEFI---RSMPLSADVLVWRTFLGAC 668
+G L +A E + R + + + + +GAC
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-11
Identities = 55/254 (21%), Positives = 111/254 (43%), Gaps = 11/254 (4%)
Query: 357 AIITGYVQSGGRDKEAVKLFSDMIQGQ--VAPNHFTFASVLKACGNLLDSNVAEQVYTHA 414
A+I+ QSG D+ A + ++M + P+H T +++KAC N + A++VY
Sbjct: 547 ALISACGQSGAVDR-AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 415 VKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNL----VSYNTMVDAYAKNLNS 470
+ V ++ ++ G + A ++ + +K + V ++ +VD +
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 471 EKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNAL 530
+KAFE+L + G+ +++SL+ S+ K +++ I NAL
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 531 ISMYSRCANVEAAFQVFKEMEDR----NVISWTSMITGFAKHGFAARALEIFYKMLADGI 586
I+ + A +V EM+ N I+++ ++ + A L++ + DGI
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 587 KPNGITYIAVLSAC 600
KPN + + C
Sbjct: 786 KPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 7e-10
Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 36/235 (15%)
Query: 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550
TF L+S +S I ++ + ++G +++ +Y LIS ++ V+A F+VF EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 551 E----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606
+ NV ++ ++I G A+ G A+A + M + +KP+ + + A++SAC +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS--- 555
Query: 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLG 666
G V R D+L + T P+ D + +
Sbjct: 556 --------------GAVDR------AFDVLAEMKAETH--------PIDPDHITVGALMK 587
Query: 667 ACRVHGDTELGKHAAEMILEQDPQ-DPAAHILLSNLYASAGHWEYVANIRKRMKE 720
AC G + K +MI E + + P + + N + G W++ +I MK+
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-09
Identities = 86/413 (20%), Positives = 166/413 (40%), Gaps = 52/413 (12%)
Query: 51 IYH---LNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRS 107
IYH + Q+A+ + +P L T+++L+ C S++ V L+ +
Sbjct: 407 IYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 108 KLEPNSVILNSLISLYSKCGDLNEANKIFKSMGN---KRDIVSWSSMISSYVNRGKQVDA 164
L+ + + +LIS +K G ++ ++F M N + ++ ++ ++I G+ A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 165 IHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIG-----------------HIIYGFLL 207
+ M P+ F+A+I AC + V HI G L+
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 208 KCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVG----WTLMITRCTQLGC 263
K CA G VD A +V+ + E N G +T+ + C+Q G
Sbjct: 587 K----------ACA-----NAGQVD--RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 264 PRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCS 323
A+ ++ DM G PD S +V ++ A + G+ L S
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 324 LVDMYAKCTVDGSVDDSRKVFDRM----LDHNVMSWTAIITGYVQSGGRDKEAVKLFSDM 379
L M A C+ + + ++++ + L V + A+IT + K A+++ S+M
Sbjct: 690 L--MGA-CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK-ALEVLSEM 745
Query: 380 IQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISM 432
+ + PN T++ +L A D++V + + A + G + + + +
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 106/508 (20%), Positives = 198/508 (38%), Gaps = 109/508 (21%)
Query: 48 NRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDT--YSLLLKSCIRSRNFHLGKLVHSLLT 105
NRL L DGR++ I L+ M ++G D+D ++ K+C + R V
Sbjct: 378 NRL---LRDGRIKDCIDLLEDMEKRGLL-DMDKIYHAKFFKACKKQRA------VKEAFR 427
Query: 106 RSKLEPNSVI--LNSLISLYSKCGDLNEANKIF---KSMGNKRDIVSWSSMISSYVNRGK 160
+KL N + N L+S+ + D++ A ++ + G K D ++++IS+ GK
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 161 QVDAI-HMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVG 219
VDA+ +F EM+ G N + F A+I G
Sbjct: 488 -VDAMFEVFHEMVNAGVEANVHTFGALID------------------------------G 516
Query: 220 CALIDMFVKGSVDLESAYKVFDKMTEKNT----VGWTLMITRCTQLGCPRDAIRLFLDMI 275
CA K A+ + M KN V + +I+ C Q G A + +M
Sbjct: 517 CARAGQVAK-------AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 276 LSG--FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTV 333
PD T+ ++ AC+
Sbjct: 570 AETHPIDPDHITVGALMKACAN-------------------------------------- 591
Query: 334 DGSVDDSRKVFDRMLDHNVMS----WTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHF 389
G VD +++V+ + ++N+ +T + Q G D A+ ++ DM + V P+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF-ALSIYDDMKKKGVKPDEV 650
Query: 390 TFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL 449
F++++ G+ D + A ++ A K+G L +SL+ + + + A + +E +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 450 FEKNL---VS-YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAI 505
L VS N ++ A + KA E+L E++ G+ + T++ LL +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 506 GKGEQIHARIIKSGFESNHCIYNALISM 533
G + ++ + G + N + + +
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 144 DIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192
D+V+++++I Y +GK +A+ +F EM + G PN Y +S +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602
+V+++ ++I G+ K G AL++F +M GIKPN TY ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 351 NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN 400
+V+++ +I GY + G + +EA+KLF++M + + PN +T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 59/280 (21%), Positives = 126/280 (45%), Gaps = 24/280 (8%)
Query: 428 SLISMYARSGRMEDARKAFESLFEKNL----VSYNTMVDAYAKNLNSEKAFELLHEI--E 481
+LI AR+G++ A A+ + KN+ V +N ++ A ++ ++AF++L E+ E
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 482 DTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541
+ T +L+ ++ G + + ++++ I + + +Y ++ S+ + +
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 542 AAFQVFKEMEDRNVIS---WTSMITGFAKH-GFAARALEIFYKMLADGIKPNGITYIAVL 597
A ++ +M+ + V + S + A H G +A EI GIK ++Y +++
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 598 SACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL---LGRSGSLTEALEF---IRS 651
ACS+A WK +Y++ ++ + M L L L +ALE ++
Sbjct: 692 GACSNAK----NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 652 MPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691
+ L + + + L A D ++G +L Q +D
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVG----LDLLSQAKED 783
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 527 YNALISMYSRCANVEAAFQVFKEMEDR----NVISWTSMITGFAK 567
YN LI Y + VE A ++F EM+ R NV +++ +I G K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498
++V+YNT++D Y K E+A +L +E++ G+ + YT++ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 6e-07
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 111 PNSVILNSLISLYSKCGDLNEANKIFKSMGNKR---DIVSWSSMISSYVN 157
P+ V N+LI Y K G + EA K+F M + ++ ++S +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 427 NSLISMYARSGRMEDARKAFESLFEK----NLVSYNTMVDAYAK 466
N+LI Y + G++E+A K F + ++ N+ +Y+ ++D K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 39 QPTTSEPLSNRLIYHLNDG-RVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLG 97
+PT S N LI L +G ++ KA+ L M + G P+ TYS+LL + R + +G
Sbjct: 716 RPTVS--TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 98 KLVHSLLTRSKLEPNSVILNSLISL----YSKCGDLNEANKIFKSMGNKRDIVSWSSM 151
+ S ++PN V+ + L + K L E F S G + W+S
Sbjct: 774 LDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS-GRPQIENKWTSW 830
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589
+++ ++I G K G ALE+F +M GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 556 ISWTSMITGFAKHGFAARALEIFYKMLADGI 586
+++ S+I+G+ K G ALE+F +M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 527 YNALISMYSRCANVEAAFQVFKEMEDRNV 555
YNAL+ ++ + + A V +EM+ +
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSAC 293
+ V + +I + G +A++LF +M G P+ +T S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGV 485
V+YN+++ Y K E+A EL E+++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 526 IYNALISMYSRCANVEAAFQVFKEMEDRNV 555
YN+LIS Y + +E A ++FKEM+++ V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 525 CIYNALISMYSRCANVEAAFQVFKEMEDRNV 555
YN LI + VE A ++FKEM++R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 8e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEME 551
G + + YN LI R V+ A ++ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKP 588
+ ++ +++ AK G AL + +M A G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 146 VSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNE 180
V+++++I G+ +A+ +F EM E G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGV 485
V+YNT++D K E+A EL E+++ G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.23 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.19 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.3 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.16 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.84 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.79 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.58 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.56 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.45 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.88 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.42 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.33 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.31 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.22 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.7 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.97 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.77 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.71 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.08 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.74 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.2 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.19 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.66 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.54 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.18 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.7 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.49 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.69 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.36 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.59 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.57 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.88 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.25 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 84.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.29 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.32 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 82.33 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 82.11 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.91 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.74 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.64 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.98 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.75 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.61 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.61 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.41 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.17 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-154 Score=1376.92 Aligned_cols=802 Identities=35% Similarity=0.627 Sum_probs=790.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCC
Q 002975 48 NRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCG 127 (861)
Q Consensus 48 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 127 (861)
..+..+++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.++|..+.+.++.++..++|++|.+|+++|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhh
Q 002975 128 DLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLL 207 (861)
Q Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 207 (861)
+++.|+++|++|+. ||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+.++|..++
T Consensus 136 ~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 136 ELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred ChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHH
Q 002975 208 KCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLS 287 (861)
Q Consensus 208 ~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 287 (861)
+.| +.+|+.++|+|+.+|++ +|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+
T Consensus 215 ~~g-~~~~~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 215 RFG-FELDVDVVNALITMYVK-CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HcC-CCcccchHhHHHHHHhc-CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 999 99999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 002975 288 GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGG 367 (861)
Q Consensus 288 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (861)
.+|.+|++.|+++.|+++|..+.+.|+.||..++|+|+++|+++|+ +++|.++|++|..+|+++||+||.+|++.|+
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS---WGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 002975 368 RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE 447 (861)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (861)
+++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|+
T Consensus 370 -~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 -PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred -HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 002975 448 SLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 448 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.+|..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999985 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLIS 607 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 607 (861)
|+|+++|+|+|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|+++
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
+|.++|+.|.+++|+.|+..||++|+++|+|+|+++||.+++++|+.+||..+|++|+++|+.||+.+.|+.++++++++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
+|++++.|+.|+|+|+..|+|++|.++++.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|++
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccchhhhhhhhhhhhHHHHHHHHhhcCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEeecCCcc
Q 002975 768 FGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRF 847 (861)
Q Consensus 768 ~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~~~~~~ 847 (861)
.||+||+..++ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++|||||||.+||
T Consensus 767 ~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rf 845 (857)
T PLN03077 767 SGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQF 845 (857)
T ss_pred CCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcc
Confidence 99999999988 55888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCCCC
Q 002975 848 HHIKDGKCSCND 859 (861)
Q Consensus 848 h~~~~g~~~c~~ 859 (861)
|||+||+|||||
T Consensus 846 h~f~~g~csc~d 857 (857)
T PLN03077 846 HHFKDGECSCGD 857 (857)
T ss_pred eeCCCCcccCCC
Confidence 999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-125 Score=1100.32 Aligned_cols=612 Identities=37% Similarity=0.659 Sum_probs=605.4
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG-FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSL 324 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 324 (861)
++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 467899999999999999999999999999765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS 404 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 404 (861)
+++|+++|+ +++|.++|++|+++|+++||++|.+|++.|+ +++|+++|++|.+.|+.||..||+.++.+|+..|+.
T Consensus 165 i~~y~k~g~---~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGM---LIDARRLFDEMPERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCC---HHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999998 9999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 405 NVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 405 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHH
Q 002975 485 VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITG 564 (861)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 564 (861)
+.||..||++++.+|++.|++++|.++|..+.+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+++|+.|+..||++|+++|+++|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
|.++|++|+..|+..+|++|+.+|+.+|+.+.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccchhhhhhhhhhhhHHHHHHHHhh
Q 002975 725 KEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLI 804 (861)
Q Consensus 725 ~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h~e~la~~~~~~ 804 (861)
|.|||||||+++++|.|++||.+||+..+||.+++++..+|++.||+||+.++++++++++|+..+++||||||+|||||
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEeecCCccccccCCccCCCCCC
Q 002975 805 STSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVLRDSNRFHHIKDGKCSCNDYW 861 (861)
Q Consensus 805 ~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~~c~~~~ 861 (861)
+||+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||||||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-81 Score=747.00 Aligned_cols=687 Identities=27% Similarity=0.403 Sum_probs=605.0
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHH
Q 002975 143 RDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCAL 222 (861)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l 222 (861)
++..++|.+|.+|++.|++++|+.+|++|.+.|+.|+..+|..++++|...+.++.|.++|..+.+.+ ..++..++|+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHH
Confidence 67777999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHH
Q 002975 223 IDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSG 302 (861)
Q Consensus 223 ~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 302 (861)
+.+|++ +|+++.|.++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++..+
T Consensus 128 i~~~~~-~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVR-FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHh-CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 002975 303 KQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG 382 (861)
Q Consensus 303 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~ 382 (861)
+++|..+++.|+.+|..++|+||++|+++|+ +++|.++|++|+.+|+++||+||.+|++.|+ .++|+++|.+|...
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMPRRDCISWNAMISGYFENGE-CLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCCCCCcchhHHHHHHHHhCCC-HHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999 9999999999999999999999999999999 99999999999999
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHH
Q 002975 383 QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVD 462 (861)
Q Consensus 383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 462 (861)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 002975 543 AFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGI 622 (861)
Q Consensus 543 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 622 (861)
|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.+ +++||..||.+++.+|++.|.+++|.+++..|. +.|+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~ 520 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGI 520 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCC
Confidence 99999999999999999999999999999999999999986 599999999999999999999999999999998 7799
Q ss_pred CCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCchHHHHHH
Q 002975 623 VQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ--DPQDPAAHILLSN 700 (861)
Q Consensus 623 ~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~ 700 (861)
.++..++++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|..+++++.+. .| |..+|..+..
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~ 597 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLC 597 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHH
Confidence 999999999999999999999999999998 899999999999999999999999999999874 45 6778888889
Q ss_pred HHHHcCChhHHHHHHHHHH-hCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCcccc
Q 002975 701 LYASAGHWEYVANIRKRMK-ERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLH 779 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~ 779 (861)
.|.+.|++++|.++++.|+ +.|+.+....- .-.+..| ... ..+++..+.+++.+..|+....-.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----~~lv~~l----~r~-------G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----ACVVDLL----GRA-------GKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHH----HHHHHHH----HhC-------CCHHHHHHHHHHCCCCCCHHHHHH
Confidence 9999999999999999998 57776542100 0000000 000 012334444455567777543211
Q ss_pred ccchhhhhhhhhhhhHHHH-HHHHhhcCCCCCcEEEEccccccCCcchhhhhhhhhhCceEEe-------ecCCcccccc
Q 002975 780 ELEEEQKVQYLFQHSEKIA-VAFGLISTSKSKPIRVFKNLRVCGDCHTAIKYISMVTGREIVL-------RDSNRFHHIK 851 (861)
Q Consensus 780 ~~~~~~~~~~~~~h~e~la-~~~~~~~~~~~~~~~~~~nl~~c~~~h~~~~~~s~~~~~~~~~-------~~~~~~h~~~ 851 (861)
-+..+.....+ .--|+.| ..+.+.+...+.-+-+..-....|+-.++.+.-..+..+.+-. --.+..|-|.
T Consensus 663 Ll~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 663 LLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 12222110000 0012222 2344545444544433333456788888888888877763321 1135678887
Q ss_pred CCccC
Q 002975 852 DGKCS 856 (861)
Q Consensus 852 ~g~~~ 856 (861)
.|--|
T Consensus 742 ~~d~~ 746 (857)
T PLN03077 742 TDDES 746 (857)
T ss_pred cCCCC
Confidence 66544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=624.00 Aligned_cols=479 Identities=25% Similarity=0.423 Sum_probs=461.6
Q ss_pred HhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCc
Q 002975 137 KSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG-FCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSD 215 (861)
Q Consensus 137 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 215 (861)
+..+..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.| +.+|
T Consensus 79 ~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~ 157 (697)
T PLN03081 79 DDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPD 157 (697)
T ss_pred ccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcc
Confidence 334444678899999999999999999999999999764 78999999999999999999999999999999999 8999
Q ss_pred hhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 002975 216 VCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSE 295 (861)
Q Consensus 216 ~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 295 (861)
..++|.|+.+|++ +|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 158 ~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 158 QYMMNRVLLMHVK-CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHH
Q 002975 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKL 375 (861)
Q Consensus 296 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l 375 (861)
.|..+.++++|..+.+.|+.+|..++|+|+++|+++|+ +++|.++|++|.++|+++||+||.+|++.|+ .++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~-~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGY-SEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999999 9999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee
Q 002975 376 FSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV 455 (861)
Q Consensus 376 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (861)
|++|.+.|+.||..||++++.+|++.|+++.|+++|..|.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|++
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH-hCCCCchhHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK-SGFESNHCIYNALISMY 534 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y 534 (861)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 69999999999999999
Q ss_pred HccCCHHHHHHHHHhcc-CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEME-DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
++.|++++|.++|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999997 68999999999999999999999999999976 6675 56999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q 002975 613 FRSMYDEHGIVQ 624 (861)
Q Consensus 613 ~~~m~~~~~~~p 624 (861)
++.|. +.|+..
T Consensus 551 ~~~m~-~~g~~k 561 (697)
T PLN03081 551 VETLK-RKGLSM 561 (697)
T ss_pred HHHHH-HcCCcc
Confidence 99998 557653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=613.22 Aligned_cols=529 Identities=16% Similarity=0.239 Sum_probs=430.0
Q ss_pred CCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCC-CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHH
Q 002975 75 HPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKL-EPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMIS 153 (861)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~ 153 (861)
.++...|..++..|++.|+++.|.++++.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|+. ||..+||.||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 44556677777777777777777777777777764 35566666777777777777777777777776 77777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCH
Q 002975 154 SYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDL 233 (861)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~ 233 (861)
+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.| +
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v--------------------- 503 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-V--------------------- 503 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-C---------------------
Confidence 777777777777777777777766666666666666665555555555555554444 2
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH--
Q 002975 234 ESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIR-- 311 (861)
Q Consensus 234 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 311 (861)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+++..|.+
T Consensus 504 -----------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 504 -----------EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred -----------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 3667777777777777788888888888888888888888888888888888888888888888876
Q ss_pred hCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC----CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 002975 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD----HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN 387 (861)
Q Consensus 312 ~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~ 387 (861)
.|+.||..+|++||.+|+++|+ +++|.++|+.|.+ ++..+||++|.+|++.|+ +++|+++|++|.+.|+.||
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~---ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQ---VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCC
Confidence 5677888888888888888777 8888888888854 355788888888888888 9999999999999999999
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc----CCCCeehHHHHHHH
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL----FEKNLVSYNTMVDA 463 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~ 463 (861)
..||+.++.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++| ..||.++||+||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 46899999999999
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA 543 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 543 (861)
|++.|++++|+++|++|...|+.||..||++++.+|++.|++++|.++|..|.+.|+.||..+|++|+.+|.+ ++++|
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987542 34444
Q ss_pred HHH------HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 544 FQV------FKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 544 ~~~------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.++ |+.+...+...| .++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.|.
T Consensus 807 ~~l~~~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 807 CALGEPVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hhhhhhhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 444 333222333334 45699999999999999999999999987778888888888887776
Q ss_pred hhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---CCCCH
Q 002975 618 DEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---LSADV 658 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~~p~~ 658 (861)
..+..|+..+|+++++.+++. .++|..++++|. ..|+.
T Consensus 875 -~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 875 -ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred -cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 557778889999999988532 478999999983 55553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=585.43 Aligned_cols=549 Identities=18% Similarity=0.268 Sum_probs=446.2
Q ss_pred CCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcch-----HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHH
Q 002975 213 DSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVG-----WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLS 287 (861)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 287 (861)
.++...+..++..+++ .|++++|.++|++|+.++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4455666666666777 777777777777777655443 34455567777777777777777753 7777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccC----CCCcccHHHHHHHHH
Q 002975 288 GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML----DHNVMSWTAIITGYV 363 (861)
Q Consensus 288 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 363 (861)
.+|.+|++.|+++.|.++|..|.+.|+.||..+|++||.+|+++|+ +++|.++|++|. .||..+||+||.+|+
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777776 777777777775 467778888888888
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH--cCCCCCcchhhHHHHHHHHcCCHHH
Q 002975 364 QSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK--RGRALDDCVGNSLISMYARSGRMED 441 (861)
Q Consensus 364 ~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~ 441 (861)
+.|+ +++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++
T Consensus 519 k~G~-~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 519 RAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 8887 999999999999999999999999999999999999999999999976 6789999999999999999999999
Q ss_pred HHHHHHhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 002975 442 ARKAFESLFE----KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 442 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 517 (861)
|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999954 466899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
.|+.|+..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhh----hcC-------------------CHHHHHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG----RSG-------------------SLTEALEFIR 650 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----r~g-------------------~~~eA~~~~~ 650 (861)
++++.+|++.|++++|.++|+.|. +.|+.|+..+|+++++++. +++ ..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999998 7799999999999998643 222 3468999999
Q ss_pred hCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHcCCh-hHHHHHHHHHHhCCCcc
Q 002975 651 SMP---LSADVLVWRTFLGACRVHGDTELGKHAAEMIL-EQDPQDPAAHILLSNLYASAGHW-EYVANIRKRMKERNLIK 725 (861)
Q Consensus 651 ~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~L~~~y~~~g~~-~~a~~~~~~m~~~~~~~ 725 (861)
+|. ..||..+|+.++..+...++.+.+..+++.+. +-.+.+..+|..|.+.+ |++ ++|..+++.|.+.|+.+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 984 88999999999977777788888888877543 34556778888888876 444 58999999999999987
Q ss_pred CCce-eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC-cccCCCccccc
Q 002975 726 EAGC-SWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFG-YLPDTNFVLHE 780 (861)
Q Consensus 726 ~~~~-s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g-~~~~~~~~~~~ 780 (861)
.... .| ..--.++.|-.|- .--.+...|..+...+. .| ..|.....++.
T Consensus 914 ~~~~~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~-~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 914 SVSFKKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLA-AGAKLPNVTILLPT 964 (1060)
T ss_pred CcccccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHh-ccCcCCcceeeecc
Confidence 7542 11 1122233332221 11223445556655543 45 56665444544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=354.92 Aligned_cols=651 Identities=13% Similarity=0.051 Sum_probs=319.7
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCC
Q 002975 49 RLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGD 128 (861)
Q Consensus 49 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 128 (861)
....+...|++++|...|+...... +.+..++..+...+...|+++.|...+..+.+..+. +...+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcC
Confidence 3336677888888888888887654 345566777777777778888888887777766543 22222223333445666
Q ss_pred hHHHHHHHHhcC-CCCC-ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhh
Q 002975 129 LNEANKIFKSMG-NKRD-IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFL 206 (861)
Q Consensus 129 ~~~A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 206 (861)
+++|...|+.+- ..|+ ...+..+...+...|++++|...|....+.. +.+...+..+...+...|+++.|.+.+..+
T Consensus 277 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666551 1122 2223333444555566666666666555432 112333444445555555555555555555
Q ss_pred hhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-----
Q 002975 207 LKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG----- 278 (861)
Q Consensus 207 ~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 278 (861)
.+.. +.+...++.+...|.+ .|++++|.+.|+++.+ .+...|..+...+...|++++|++.|+.+.+..
T Consensus 356 ~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 432 (899)
T TIGR02917 356 LGLD--PDDPAALSLLGEAYLA-LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432 (899)
T ss_pred HhcC--CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh
Confidence 5443 3445555555555555 5555555555555433 233344445555555555555555555554432
Q ss_pred ----------------------------CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002975 279 ----------------------------FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAK 330 (861)
Q Consensus 279 ----------------------------~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 330 (861)
.+++..++..+...+...|+.++|.+.+..+++.. +.+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHH
Confidence 12233344444444444444444444444444322 1122233334444444
Q ss_pred CCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVA 407 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 407 (861)
.|+ +++|.+.|+++.. .+..++..+...+.+.|+ .++|..+|.++...+ +.+...+..+...+...|+++.|
T Consensus 512 ~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 512 EGN---PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN-EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred CCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 433 4444444444422 123344444444444444 444554444443321 12233334444444445555555
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
.++++.+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++....
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55554444332 33334444455555555555555555544421 123344444445555555555555555544321
Q ss_pred CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc--CCCchHHHHHH
Q 002975 485 VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME--DRNVISWTSMI 562 (861)
Q Consensus 485 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li 562 (861)
+.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 2233444444445555555555555555544443 3344444445555555555555555555443 23334444445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+.. +++...+..+..++...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-
Confidence 55555555555555555554421 2223344444455555555555555555554221 2234444555555555555
Q ss_pred HHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 643 TEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 643 ~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++|++.++++. .. .++.+|..+..++...|+.++|...++++++.+|.++.++..++.+|.+.|++++|.++++.|
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555554431 11 233444455555555555555555555555555555555555555555555555555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=352.40 Aligned_cols=652 Identities=12% Similarity=0.037 Sum_probs=406.4
Q ss_pred HHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHH
Q 002975 52 YHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNE 131 (861)
Q Consensus 52 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 131 (861)
.+...|++++|...|+++.+... .+...+..+...+...|+++.|..++..+.+..+ .+...+..+...+...|++++
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 134 AYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIEL 211 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHH
Confidence 55566666666666666655432 2334455555555566666666666666555432 244455555555555666666
Q ss_pred HHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------------------------------C
Q 002975 132 ANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGF--------------------------------C 177 (861)
Q Consensus 132 A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------------------------~ 177 (861)
|...|+.. ..+.+..+|..++..+...|++++|...++.+.+... .
T Consensus 212 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 212 ALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 66666554 1112344455555555555555555555555443211 1
Q ss_pred CCc-ccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHH
Q 002975 178 PNE-YCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTL 253 (861)
Q Consensus 178 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~ 253 (861)
|+. ..+..+...+...|+++.|...+..+++.. +.+...+..+...+.+ .|++++|...++.+.. .+...|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLR-LGRVDEAIATLSPALGLDPDDPAALSL 368 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 221 112222334556677777777777777754 5566777788888888 8999999999887764 35667888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCC
Q 002975 254 MITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTV 333 (861)
Q Consensus 254 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 333 (861)
+...+.+.|++++|.++|+++.+... .+...+..+...+...|+.+.|...+..+.+.... .......++..|.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCC
Confidence 99999999999999999999876532 23344555556666777777777777776655422 12233334445555444
Q ss_pred CCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCC---------------------------
Q 002975 334 DGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ--------------------------- 383 (861)
Q Consensus 334 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g--------------------------- 383 (861)
.++|..+++.+.. .+...|+.+...|...|+ +++|.+.|+++.+..
T Consensus 447 ---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 447 ---FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred ---HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555432 133445555555555554 555555555544321
Q ss_pred ------CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCe
Q 002975 384 ------VAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNL 454 (861)
Q Consensus 384 ------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 454 (861)
.+.+..++..+...+.+.|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+.
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 601 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 11233344444444444455555555555444432 23334444555555555555555555555532 233
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456666666666666666666666665432 2344455556666666666666666666665543 34455666666666
Q ss_pred HccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
.+.|++++|.++++.+.+ .+...|..+...+...|++++|+..|+++.+. .|+..++..++.++.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666653 24456666777777777777777777777773 4555666677777788888888888
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
.++.+.+. .+.+...+..+..+|.+.|+.++|.+.|+++. .++++.+++.+...+...|+ ..|+..+++++++.|
T Consensus 758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 88777643 23456777788888888888888888888863 34567788888888888888 779999999999999
Q ss_pred CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 690 QDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 690 ~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 988888899999999999999999998887644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=253.79 Aligned_cols=106 Identities=64% Similarity=1.098 Sum_probs=98.2
Q ss_pred ceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 002975 728 GCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYLPDTNFVLHELEEEQK--------VQYLFQHSEKIAV 799 (861)
Q Consensus 728 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~h~e~la~ 799 (861)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999987 9999999999988 455677788999999999998888766 5689999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-cccCCcchhhhhhhhhhCceEEeecCCcccccc
Q 002975 800 AFGLISTSKSKPIRVFKNL-RVCGDCHTAIKYISMVTGREIVLRDSNRFHHIK 851 (861)
Q Consensus 800 ~~~~~~~~~~~~~~~~~nl-~~c~~~h~~~~~~s~~~~~~~~~~~~~~~h~~~ 851 (861)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-24 Score=261.21 Aligned_cols=638 Identities=12% Similarity=0.053 Sum_probs=434.0
Q ss_pred cchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchH-------
Q 002975 44 EPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVIL------- 116 (861)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 116 (861)
..+..........++.+.|...+.++.... +-++..+..+...+.+.|+.++|.+.++...+..+. +....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~ 106 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence 345555557778899999999999988764 346777888888889999999999999999887754 22221
Q ss_pred ---------HHHHHHHhcCCChHHHHHHHHhcC-CCCCceeHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccH
Q 002975 117 ---------NSLISLYSKCGDLNEANKIFKSMG-NKRDIVSWS--SMISSYVNRGKQVDAIHMFVEMLELGFCP-NEYCF 183 (861)
Q Consensus 117 ---------~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 183 (861)
..+...+.+.|++++|.+.|+.+- ..|+..... .+.......|+.++|++.|+++.+.. | +...+
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~ 184 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLR 184 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHH
Confidence 222335666777777777777652 112221111 11111123466777777777766542 3 23334
Q ss_pred HHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcC---C--CCCcchHHHHHHHH
Q 002975 184 SAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKM---T--EKNTVGWTLMITRC 258 (861)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~---~--~~~~~~~~~li~~~ 258 (861)
..+-..+...|+.++|.+.++++.+.. + +....+...++.+ . ......+...+..+
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~--~-----------------~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSP--A-----------------GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCC--C-----------------chHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 445555566666666666666665432 0 0000011111100 0 00111222223223
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHH
Q 002975 259 TQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 259 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~ 338 (861)
-.......|...+.++......|+... ...-.++...|++++|...+..+++... .+...+..|...|.+.|+ .+
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~---~~ 320 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGD---RA 320 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC---HH
Confidence 333334455555655544322333221 1223445567888888888888877532 355667777788888777 88
Q ss_pred HHHHHHhccCCC--Cc---ccHHHH------------HHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhccc
Q 002975 339 DSRKVFDRMLDH--NV---MSWTAI------------ITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNL 401 (861)
Q Consensus 339 ~A~~~~~~~~~~--~~---~~~~~l------------i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 401 (861)
+|+..|++..+. +. ..|..+ ...+.+.|+ +++|...|++..+.. +.+...+..+...+...
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN-LAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888888877442 21 123222 335667888 999999999998753 23455666777888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC------------eehHHHHHHHHHhcCC
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKN------------LVSYNTMVDAYAKNLN 469 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~ 469 (861)
|++++|++.++.+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|+
T Consensus 399 g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 399 KDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 99999999999998764 334555666777774 467899999988775321 1235556778889999
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
+++|++.|++..+.. +-+...+..+...+.+.|+.++|...++.+++.. +.+...+..+...+.+.|+.++|...++.
T Consensus 477 ~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 477 WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999998753 2245677788889999999999999999998754 44555666666677889999999999998
Q ss_pred ccCC----Cch---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 550 MEDR----NVI---------SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 550 ~~~~----~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
+... +.. .+..+...+...|+.++|+.+++. .+++...+..+...+...|++++|+..|+..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8632 111 123456678899999999999872 2345567778889999999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 617 YDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 617 ~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+. .| +...+..++.+|...|++++|++.++... ..| +..++..+..++...|+.++|...++++++..|+++.
T Consensus 630 l~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 630 LTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 843 34 56778889999999999999999999875 344 4667788888899999999999999999998876653
Q ss_pred ------hHHHHHHHHHHcCChhHHHHHHHHHHh-CCC
Q 002975 694 ------AHILLSNLYASAGHWEYVANIRKRMKE-RNL 723 (861)
Q Consensus 694 ------~~~~L~~~y~~~g~~~~a~~~~~~m~~-~~~ 723 (861)
.+..++.+|...|++++|.+.++.... .|+
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 566789999999999999999886643 344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-23 Score=252.64 Aligned_cols=610 Identities=10% Similarity=0.029 Sum_probs=433.7
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcC-CCCCcee-H----------
Q 002975 81 YSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMG-NKRDIVS-W---------- 148 (861)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~---------- 148 (861)
+...++.+...++.+.|.+.+..+....+. ++.++..+...+.+.|+.++|.+.+++.. ..|+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 455566677788999999999988877654 67788888888999999999999999882 2233222 1
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHH
Q 002975 149 ------SSMISSYVNRGKQVDAIHMFVEMLELGFCPNEY-CFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCA 221 (861)
Q Consensus 149 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 221 (861)
-.+...+.+.|++++|+..|+.+.+.+ .|+.. ............|+.+.|...++.+++.. |.+...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 223446778899999999999987643 22221 11111222234578888888888888875 667777888
Q ss_pred HHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCCch
Q 002975 222 LIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRF-TLSGVVSACSELELFT 300 (861)
Q Consensus 222 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~ 300 (861)
+...+.. .|+.++|+..|+++...... +...+...++.+...+..|+.. .+...+..+-......
T Consensus 187 LA~ll~~-~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 187 LALLLFS-SGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHHHc-cCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 8888887 88888888888876542211 0111111122222222222211 1222222222222334
Q ss_pred HHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCChHHHHHHHH
Q 002975 301 SGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--H-NVMSWTAIITGYVQSGGRDKEAVKLFS 377 (861)
Q Consensus 301 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~ 377 (861)
.+...+....+....|+.. ...+...+...|+ +++|...|++... | +...+..+...|.+.|+ +++|+..|+
T Consensus 253 ~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~---~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~ 327 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQ---GGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-RARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHhccCcchH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 4555555444333233321 1233455666666 9999999998854 3 56788899999999999 999999999
Q ss_pred HHhhCCCCC-ChhhH------------HHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHH
Q 002975 378 DMIQGQVAP-NHFTF------------ASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARK 444 (861)
Q Consensus 378 ~m~~~g~~p-~~~t~------------~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (861)
+..+..... +...+ ......+.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 988743221 11111 112345678899999999999999875 4556677789999999999999999
Q ss_pred HHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCC--------CCHHHHHHHHHHhhcccchHHHHHHHH
Q 002975 445 AFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVG--------TSAYTFASLLSGASSIGAIGKGEQIHA 513 (861)
Q Consensus 445 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~ 513 (861)
.|++..+. +...+..+...|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++
T Consensus 407 ~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 407 YYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99998543 3446666777764 46789999998876433111 011234456677888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 002975 514 RIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG 590 (861)
Q Consensus 514 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (861)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++.
T Consensus 486 ~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 999875 45677888999999999999999999998763 3 4455656666677899999999999887543222221
Q ss_pred H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHH
Q 002975 591 I---------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVL 659 (861)
Q Consensus 591 ~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~ 659 (861)
. .+..+...+...|+.++|..+++. .+.+...+..+.+.+.+.|++++|++.+++.. ..| +..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 1 233456778899999999998862 23455667789999999999999999999874 344 577
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
.+..++..+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++.+....
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-22 Score=235.35 Aligned_cols=639 Identities=11% Similarity=0.027 Sum_probs=450.3
Q ss_pred hHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002975 46 LSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSK 125 (861)
Q Consensus 46 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 125 (861)
++.....+...|++++|+..|+...+..+. +..++..+.+.+...|+.++|+...+..++..+ -|...+..+ ..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i-- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI-- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh--
Confidence 334444556679999999999999987633 477889999999999999999999999988764 244444443 333
Q ss_pred CCChHHHHHHHHhc--CCCCCceeHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCcccHHHH-HHHhcCCc
Q 002975 126 CGDLNEANKIFKSM--GNKRDIVSWSSMISS--------YVNRGKQVDAIHMFVEMLELGFCPNEYCFSAV-IRACSNTE 194 (861)
Q Consensus 126 ~g~~~~A~~~~~~~--~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~ 194 (861)
+++++|..+++++ ..+.+...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...+
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 8999999999998 221233344444443 6666 44555444 4433445555555555 88999999
Q ss_pred chhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 002975 195 NVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDM 274 (861)
Q Consensus 195 ~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 274 (861)
+++.+..++..+.+.+ +.+......|...|....++ +.|..+++...+.+...+..+...|.+.|+.++|.++++++
T Consensus 197 dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 197 QWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999999987 55666677777788772255 88888887655578889999999999999999999999998
Q ss_pred HHCCCC-CCcccHHHHHHHHhccCCchH-HHHHHHHHHHhCCCCc-cchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCC
Q 002975 275 ILSGFL-PDRFTLSGVVSACSELELFTS-GKQLHSWAIRTGLALD-VCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHN 351 (861)
Q Consensus 275 ~~~g~~-pd~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~ 351 (861)
...-.. |+..++.-++ .+.+.... +..-+.. .+.++ ....-.++..+.+.+. ++.+.++.+ ....+
T Consensus 274 ~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 342 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQ---YDAAQKLLA-TLPAN 342 (987)
T ss_pred cccccCCCccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccH---HHHHHHHhc-CCCcc
Confidence 765333 5555554443 33333321 1100000 01111 1122344778888777 887777744 22222
Q ss_pred cccHHHHHHHHH--hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc-C-CCCCcchhh
Q 002975 352 VMSWTAIITGYV--QSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR-G-RALDDCVGN 427 (861)
Q Consensus 352 ~~~~~~li~~~~--~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~ 427 (861)
.. ..+.... ..+. ..++.+.+..|.+.. +-+....-.+--...+.|+.++|.+++...... + -..+....+
T Consensus 343 ~~---~~~r~~~~~~~~~-~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 343 EM---LEERYAVSVATRN-KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred hH---HHHHHhhccccCc-hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 22 2222222 2244 667777777776541 113333333333445778899999999888662 1 122444556
Q ss_pred HHHHHHHHcCC---HHHHHHH-------------------------HHhcCC---C--CeehHHHHHHHHHhcCChhHHH
Q 002975 428 SLISMYARSGR---MEDARKA-------------------------FESLFE---K--NLVSYNTMVDAYAKNLNSEKAF 474 (861)
Q Consensus 428 ~li~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~ 474 (861)
-|+..|.+.+. ..++..+ +..... . +...|..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 77888887766 3333332 112211 1 44567777777776 8899999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC
Q 002975 475 ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN 554 (861)
Q Consensus 475 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 554 (861)
..+.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|...|+...+.+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988887754 467665555555667899999999999987654 3444556677888999999999999999887644
Q ss_pred chHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHH
Q 002975 555 VISWTSMI---TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYA 630 (861)
Q Consensus 555 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 630 (861)
+..++... ......|++++|+..|++.++ ..|+...+..+..++.+.|++++|...|+... .+.| +...+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~ 647 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQA 647 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHH
Confidence 43333333 333345999999999999998 67888889999999999999999999999988 4455 456777
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW 708 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~ 708 (861)
.+...+...|++++|++.+++.. ..| ++..|..+..++...|+.+.|+..++++++++|+++.+....+++.....++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 88889999999999999999873 444 5779999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 002975 709 EYVANIRKRMKERNL 723 (861)
Q Consensus 709 ~~a~~~~~~m~~~~~ 723 (861)
+.|.+.++..-..++
T Consensus 728 ~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 728 RRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999887775544333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-19 Score=212.28 Aligned_cols=557 Identities=11% Similarity=0.016 Sum_probs=350.8
Q ss_pred CChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhh
Q 002975 127 GDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYG 204 (861)
Q Consensus 127 g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 204 (861)
|++++|...|+.. ..+.+..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++..++..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHH
Confidence 4444444444443 11112333444444445555555555554444432 23333333322111 44444445555
Q ss_pred hhhhccCCCCchhHHHHHHHH--------hhhCCCCHHHHHHHHhcCCCCC--cch-HHHHHHHHHhcCCchHHHHHHHH
Q 002975 205 FLLKCGYFDSDVCVGCALIDM--------FVKGSVDLESAYKVFDKMTEKN--TVG-WTLMITRCTQLGCPRDAIRLFLD 273 (861)
Q Consensus 205 ~~~~~g~~~~~~~~~~~l~~~--------~~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~ 273 (861)
++++.. |.+..++..+... |.+ .+....+++ .+...++ ... .-.+...|.+.|++++|++++.+
T Consensus 133 ~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q-~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 133 ELLAQQ--KACDAVPTLRCRSEVGQNALRLAQ-LPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHhC--CCChhHHHHHHHHhhccchhhhhh-HHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 554443 4444444444443 555 444444444 2222222 222 33336777778888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---
Q 002975 274 MILSGFLPDRFTLSGVVSACSE-LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--- 349 (861)
Q Consensus 274 m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--- 349 (861)
+.+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+ .++|.+++.++..
T Consensus 208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~---~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE---KARLQHYLIENKPLFT 278 (987)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC---HHHHHHHHHhCccccc
Confidence 87765332 2223333345554 344 555555331 333566777788888888777 8888887777642
Q ss_pred --CCcccHH------------------------------HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 350 --HNVMSWT------------------------------AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 350 --~~~~~~~------------------------------~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
+...+|- .++..+.+++. ++-+.++. .+.|..... .+..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~--~~r~ 349 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ-YDAAQKLL------ATLPANEML--EERY 349 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH-HHHHHHHh------cCCCcchHH--HHHH
Confidence 1112221 22444455554 55333331 234433322 3332
Q ss_pred h--cccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCe----ehHHHHHHHHHhcCC
Q 002975 398 C--GNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNL----VSYNTMVDAYAKNLN 469 (861)
Q Consensus 398 ~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~ 469 (861)
. ...+...++.+.+..+.+.. +-+.....-+.....+.|+.++|.++|+.... ++. ..-+-++..|...+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2 23356666777777766652 33444445555567789999999999998854 222 234466777777765
Q ss_pred ---hhHHHHH------------HHH----------Hhh-cCC-CC--CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC
Q 002975 470 ---SEKAFEL------------LHE----------IED-TGV-GT--SAYTFASLLSGASSIGAIGKGEQIHARIIKSGF 520 (861)
Q Consensus 470 ---~~~A~~l------------~~~----------m~~-~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 520 (861)
..+++.+ ..+ ... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 4444433 111 111 112 23 45566666666655 78888999888777654
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVL 597 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 597 (861)
|+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|..+|++.++. .|+. ..+..+.
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La 583 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLH 583 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 4544444455556789999999999998763 45566778888899999999999999999985 4553 3444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~ 675 (861)
..+...|++++|...+++.. .+.|+...|..+..++.+.|+.++|++.+++.. ..| +...+..+..++...|+.+
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 55667799999999999988 456778889999999999999999999999874 455 5678888889999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-20 Score=187.88 Aligned_cols=444 Identities=13% Similarity=0.111 Sum_probs=352.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhC
Q 002975 252 TLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKC 331 (861)
Q Consensus 252 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 331 (861)
..|..-..+.|++++|.+.-...-++. ..+..+...+-..+.+..+++...+--...++.. .--..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345555667888888887665443322 1112222222223344444444333222222221 12235677788888887
Q ss_pred CCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH-HhcccCChHHH
Q 002975 332 TVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLK-ACGNLLDSNVA 407 (861)
Q Consensus 332 g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a 407 (861)
|+ +++|+..++.+.+. .+..|-.+..++...|+ .+.|.+.|.+..+ +.|+.....+-+. .....|++++|
T Consensus 130 g~---~~~al~~y~~aiel~p~fida~inla~al~~~~~-~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 130 GQ---LQDALALYRAAIELKPKFIDAYINLAAALVTQGD-LELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred ch---HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC-CcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchh
Confidence 77 99999999998653 46789999999999999 9999999999877 5677666554443 33457889999
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 484 (861)
..-+.+.+... +--..+|+.|...+-..|++..|+..|++...-|+ ..|-.|...|...+.+++|+..+.+....
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 99998887764 33456788899999999999999999999976554 47888999999999999999999888753
Q ss_pred CCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHH
Q 002975 485 VGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTS 560 (861)
Q Consensus 485 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 560 (861)
.|+ ...+..+...|...|.++.|...+++.+... +.-+..|+.|..++-..|++.+|...|.+... | -..+.+.
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 555 5677778888899999999999999998864 33467899999999999999999999998873 3 3568899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r 638 (861)
|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++.. .+.|+. ..|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999999 7888 5689999999999999999999999887 788975 689999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 639 SGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 639 ~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
.|+.++|.+.+.++ ...|. +...+.|...++..|+..+|+..++.+++++||.+.+|..|.-...--..|.+-.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 99999999999887 35664 5578889999999999999999999999999999999999988888888887743
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-19 Score=181.18 Aligned_cols=413 Identities=12% Similarity=0.149 Sum_probs=328.4
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCC
Q 002975 291 SACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGG 367 (861)
Q Consensus 291 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 367 (861)
.-.-+.|++.+|++--..+-.... .+....-.+-..|..+.+ .+....--...... -..+|..+...+-..|+
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r---~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSR---LDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccc---hhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 334456777777765544433221 111111112233444333 44433322222222 24578889999999999
Q ss_pred ChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC-cchhhHHHHHHHHcCCHHHHHHH
Q 002975 368 RDKEAVKLFSDMIQGQVAP-NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALD-DCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 368 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
.++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.+ |+ ..+.+-+.......|++++|...
T Consensus 132 -~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 132 -LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred -HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999884 55 56788899999999999999999999988764 33 33344456666778999999999
Q ss_pred HHhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 002975 446 FESLFEKN---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 446 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 521 (861)
+.+..+.+ .+.|+.|...+-.+|+..+|++.|++..+ +.|+ ...|..|...|...+.++.|...+.++.... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 98875543 36899999999999999999999999885 3555 3578888888888889999988888877653 4
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVL 597 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 597 (861)
....++..|.-.|-..|.+|-|+..|++..+ |+ ...||.|..++-..|+..+|...|++.+. +.|+. ...+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 4567788888899999999999999999874 44 57999999999999999999999999999 77874 5888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDT 674 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 674 (861)
..+...|.+++|..+|.... .+.|.. ...+.|...|-.+|++++|+..+++. .++|. +..++.+.+.|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999877 556654 56788999999999999999999987 47786 45899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|..-++....
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998886644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-17 Score=186.41 Aligned_cols=388 Identities=15% Similarity=0.072 Sum_probs=288.6
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHhccCC--CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHH
Q 002975 320 VGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLK 396 (861)
Q Consensus 320 ~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 396 (861)
.+......|.+.|+ ++.|...|++... |+...|..+..+|.+.|+ +++|++.+.+..+. .| +...+..+..
T Consensus 129 ~~k~~G~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKD---FNKAIKLYSKAIECKPDPVYYSNRAACHNALGD-WEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 45566677888777 9999999998743 567788889999999999 99999999998874 45 4567777888
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHH----------------
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTM---------------- 460 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---------------- 460 (861)
++...|++++|..-+..+...+-..+... ..++.-+.+......+...++.-+. +..++..+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999999988876655432222111 1122211111112223333222111 11111111
Q ss_pred --------------HH---HH---HhcCChhHHHHHHHHHhhcC-CCC-CHHHHHHHHHHhhcccchHHHHHHHHHHHHh
Q 002975 461 --------------VD---AY---AKNLNSEKAFELLHEIEDTG-VGT-SAYTFASLLSGASSIGAIGKGEQIHARIIKS 518 (861)
Q Consensus 461 --------------i~---~~---~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 518 (861)
+. .+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 10 00 12367899999999998765 234 3456777778888999999999999999886
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHH
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYI 594 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 594 (861)
. +.....|..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..|++.++ ..|+ ...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 4 34566888899999999999999999998763 3567899999999999999999999999998 5665 55777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-------HH-HHHHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-------VL-VWRTFL 665 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-------~~-~~~~ll 665 (861)
.+..++...|++++|...|+...+.. +.+...|..+..++...|++++|++.|++.. ..|+ .. .++..+
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88889999999999999999988432 2346788889999999999999999999853 3332 11 122222
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+...|++++|+..++++++++|++..++..|+.+|...|++++|.+.++...+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2344469999999999999999999999999999999999999999999987765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-18 Score=184.91 Aligned_cols=290 Identities=12% Similarity=0.133 Sum_probs=199.5
Q ss_pred HHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhcccchH
Q 002975 433 YARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS---AYTFASLLSGASSIGAIG 506 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 506 (861)
+...|++++|...|+++.+. +..+|..+...|...|++++|..+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455556666666555332 223455566666666666666666666655432221 134555566666666666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC--------chHHHHHHHHHHhcCChHHHHHHH
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN--------VISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
+|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666542 3455667777777777777777777777765321 113455666777888888888888
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHHHHHHhCC-C
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEALEFIRSMP-L 654 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~ 654 (861)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++. .
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888773 454 446677778888888888888888888732 233 3556778888888888888888888763 4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCChhHHHHHHHHHHhCCCccCCce
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS---AGHWEYVANIRKRMKERNLIKEAGC 729 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 729 (861)
.|+...+..++..+...|+.+.|...++++++..|++.... .+...+.. .|+.+++..+++.|.+++++++|.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66766677888889999999999999999999999876444 44444443 5699999999999999999999873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-14 Score=158.86 Aligned_cols=578 Identities=13% Similarity=0.097 Sum_probs=400.5
Q ss_pred hHHHHHHHHhcC--CCCCceeHHHHHHHH--HhcCChhHHHHHHHHHHHc--CCCCCcccHHHHHHHhcCCcchhhhhhh
Q 002975 129 LNEANKIFKSMG--NKRDIVSWSSMISSY--VNRGKQVDAIHMFVEMLEL--GFCPNEYCFSAVIRACSNTENVAIGHII 202 (861)
Q Consensus 129 ~~~A~~~~~~~~--~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 202 (861)
++.|...|..+. .++|+.. .|..++ ...|++..|+.+|...... ...||+.. .+-..+.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 689999998873 2233333 233333 4567999999999997643 34455432 222445688899999999
Q ss_pred hhhhhhccCCCCchhHHHHHHHHhhh--CCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 002975 203 YGFLLKCGYFDSDVCVGCALIDMFVK--GSVDLESAYKVFDKMT---EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILS 277 (861)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~l~~~~~~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 277 (861)
+..+.+.. |.++...-.|.-+-.. ....+..+..++...- ..|.+..|.|.+.|.-.|++..++.+...+...
T Consensus 222 ~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99998865 3333333333222222 1223444555544332 257889999999999999999999999988765
Q ss_pred CCC--CCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---Cc
Q 002975 278 GFL--PDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NV 352 (861)
Q Consensus 278 g~~--pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~ 352 (861)
... .-...|-.+-+++-..|+++.|.+.+-...+..-..-+.-+-.|..+|.+.|+ ++.+...|+.+... +.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHHHHHHHHhCcchH
Confidence 311 11235778888999999999999998877765433323345578899999888 99999999998553 33
Q ss_pred ccHHHHHHHHHhcCC---ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHH----HHcCCCCCcch
Q 002975 353 MSWTAIITGYVQSGG---RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHA----VKRGRALDDCV 425 (861)
Q Consensus 353 ~~~~~li~~~~~~g~---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~----~~~g~~~~~~~ 425 (861)
.+.-.+...|+..+. ..+.|..++.+....- +.|...|..+...+-...- ......+..+ ...+-.+.+.+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 444555555655531 1466666666665532 3466677666666554433 3335555443 45666788889
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC-------Cee------hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-H
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFEK-------NLV------SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-T 491 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t 491 (861)
.|.+...+...|++.+|...|...... |.. +--.+...+-..++++.|.+.|+.+.+. -|.-+ .
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999876322 221 1222445556677899999999999875 34443 3
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCchHHHHHHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-----RNVISWTSMITGFA 566 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 566 (861)
|.-++...-..+...+|...+..+.... ..++.+++-+.+.|.+..++..|.+-|..+.+ +|..+.-+|.+.|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3333322334567788888888887754 56777788888899999999989886665542 35555555555444
Q ss_pred h------------cCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 567 K------------HGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 567 ~------------~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+ .+..++|+++|.+.++. .| |...-+.+.-.++..|++.+|..+|.+..+... ....+|-.+.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNla 687 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLA 687 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHH
Confidence 2 24578899999998884 44 556667777788999999999999999985432 3345677788
Q ss_pred HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--------
Q 002975 634 DLLGRSGSLTEALEFIRSMP----LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL-------- 701 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~-------- 701 (861)
..|..+|++-.|+++|+... .+.++.+...|..++...|.+.+|...+..+..+.|.|+.....++-+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 89999999999999998752 344678888999999999999999999999999999998876665553
Q ss_pred -----------HHHcCChhHHHHHHHHHHhCCCc
Q 002975 702 -----------YASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 702 -----------y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
....+..++|.+++..|...+-+
T Consensus 768 lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 768 LRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455677788888888775544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=174.60 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=177.4
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCCC-------eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEKN-------LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLS 497 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 497 (861)
++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|++++|+.+|+++.+. .+.+..++..+..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 33444444444455555544444442211 123455556666666666666666666543 1234555666666
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCC
Q 002975 498 GASSIGAIGKGEQIHARIIKSGFESN----HCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGF 570 (861)
Q Consensus 498 a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 570 (861)
.+...|++++|.+.+..+.+.+..+. ...+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 66666666666666666655432221 12355677788889999999999988763 3 35577788889999999
Q ss_pred hHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++|+++|+++.+. .|+ ..++..++.++...|++++|...++.+.+ ..|+...+..++.++.+.|++++|.++
T Consensus 230 ~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 230 YAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999884 344 45678888999999999999999999873 356666778888999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHhc----cCCC
Q 002975 649 IRSM-PLSADVLVWRTFLGACRV---HGDTELGKHAAEMILE----QDPQ 690 (861)
Q Consensus 649 ~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~----~~p~ 690 (861)
++++ ...|+...+..++..+.. +|+.+.+...++++++ .+|+
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9876 467888888888877654 4577777777666654 4555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-15 Score=174.19 Aligned_cols=385 Identities=9% Similarity=0.046 Sum_probs=264.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHhccCC-C--CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhc
Q 002975 324 LVDMYAKCTVDGSVDDSRKVFDRMLD-H--NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLKACG 399 (861)
Q Consensus 324 li~~y~~~g~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 399 (861)
.+......|+ .++|++++.+... . +...+..+...+...|+ +++|.++|++..+. .| +......+...+.
T Consensus 21 ~~~ia~~~g~---~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 21 WLQIALWAGQ---DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSL--EPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3444444444 7777777766643 2 22346667777777777 77777777777653 33 3444555566667
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHH
Q 002975 400 NLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--K-NLVSYNTMVDAYAKNLNSEKAFEL 476 (861)
Q Consensus 400 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l 476 (861)
..|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...+..++|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 7778888888777777663 34444 66777777788888888888877743 2 334555667777777888888877
Q ss_pred HHHHhhcCCCCCH------HHHHHHHHHh-----hcccch---HHHHHHHHHHHHh-CCCCchh-H-HHH---HHHHHHc
Q 002975 477 LHEIEDTGVGTSA------YTFASLLSGA-----SSIGAI---GKGEQIHARIIKS-GFESNHC-I-YNA---LISMYSR 536 (861)
Q Consensus 477 ~~~m~~~g~~p~~------~t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~ 536 (861)
++.... .|+. .....++... ...+++ ++|.+.++.+.+. .-.|+.. . ... .+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 776553 2221 0111112211 122233 6677777777754 2223221 1 111 1234456
Q ss_pred cCCHHHHHHHHHhccCCC---ch-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHH
Q 002975 537 CANVEAAFQVFKEMEDRN---VI-SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-----GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~ 607 (861)
.|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|+++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHH
Confidence 799999999999988532 11 1122567889999999999999998874 332 234566777888999999
Q ss_pred HHHHHHHHHHhhcC----------CCCC---hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC
Q 002975 608 EGWKHFRSMYDEHG----------IVQR---MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 608 ~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 672 (861)
+|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++. .+.+...|..++..+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999998874321 1123 2345567789999999999999999874 3446779999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.+.|+..++++++++|++...++.++.++...|+|++|..+.+.+.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-15 Score=171.26 Aligned_cols=329 Identities=9% Similarity=-0.013 Sum_probs=262.1
Q ss_pred cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Q 002975 354 SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMY 433 (861)
Q Consensus 354 ~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 433 (861)
-...++..+.+.|+ .++|+.++.........+ ......++.++...|+++.|.+.++.+.+.. +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~-~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDE-TDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCC-cchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34556777888898 999999999988764333 3344445566677999999999999998875 55667788889999
Q ss_pred HHcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHH
Q 002975 434 ARSGRMEDARKAFESLFE--K-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 510 (861)
.+.|++++|...|++... | +...|..+...+...|++++|...++.+......+ ...+.. +..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHH
Confidence 999999999999998844 3 45678889999999999999999999887654322 223323 344788899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAAR----ALEIFYKMLA 583 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 583 (861)
.+..+.+....++......+...|.+.|++++|...|+.... .+...+..+...|...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999987765334455556667889999999999999998874 356788889999999999986 8999999998
Q ss_pred cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHH
Q 002975 584 DGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLV 660 (861)
Q Consensus 584 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~ 660 (861)
..|+ ...+..+...+...|++++|...++...+ ..|+ ...+..+...|.+.|++++|++.++++. ..|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 5676 55888899999999999999999999884 3444 4566778899999999999999999874 5666544
Q ss_pred HH-HHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 661 WR-TFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 661 ~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+. .+..++...|+.+.|+..++++++.+|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 43 456678899999999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-14 Score=152.72 Aligned_cols=481 Identities=13% Similarity=0.116 Sum_probs=313.0
Q ss_pred hhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCCchHHHH
Q 002975 196 VAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKN------TVGWTLMITRCTQLGCPRDAIR 269 (861)
Q Consensus 196 ~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 269 (861)
...|.+.+...-+.. +.++.+.+.|.+.|.- .|++..+..+...+...+ ..+|--+..+|-..|++++|..
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 344445554444443 5666777777777776 777777777766554422 2346667777778888888888
Q ss_pred HHHHHHHCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC-CCCCHHHHHHHHhc
Q 002975 270 LFLDMILSGFLPDRFT--LSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCT-VDGSVDDSRKVFDR 346 (861)
Q Consensus 270 l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-~~g~~~~A~~~~~~ 346 (861)
.|.+-.+ ..||.++ +..+...+...|+++.+...|+.+.+.. +.+..+...|-..|...+ .....+.|..++.+
T Consensus 329 yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 7766554 3445433 3345566777788888888887777653 223344455555565542 11226777777777
Q ss_pred cCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHh----hCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc--
Q 002975 347 MLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMI----QGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR-- 417 (861)
Q Consensus 347 ~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-- 417 (861)
...+ |...|-.+...|-+.. ...++..|.... ..+-.+-....|.+.......|+++.|...+......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d--~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTD--PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6554 4455665555555544 334466665543 3455567777888888888889999999888888665
Q ss_pred -CCCCCcc------hhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHh-------cCChhHHHHHHHHHhhc
Q 002975 418 -GRALDDC------VGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAK-------NLNSEKAFELLHEIEDT 483 (861)
Q Consensus 418 -g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~ 483 (861)
-..+|.. +--.+...+-..++.+.|.+.|..+....+. .|++|.+ .+...+|...+++....
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 2233332 2223556666677888888988888654332 2333333 35677888888887653
Q ss_pred CCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHc------------cCCHHHHHHHHHhc
Q 002975 484 GVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIYNALISMYSR------------CANVEAAFQVFKEM 550 (861)
Q Consensus 484 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~------------~g~~~~A~~~~~~~ 550 (861)
. .-++..++.+...+.....+..|..-+..+.+. ...+|.+..-+|.+.|.. .+..++|+++|.+.
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 2 333334444455666666777777766655443 223677777777776653 24567888888877
Q ss_pred cC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 551 ED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 551 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
.+ +|..+-|.+.-.++..|++.+|..+|.+..+... -+..+|.++..+|...|++..|++.|+...+++.-.-+..
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 74 4667778888889999999999999999988653 3445788899999999999999999999888888777888
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CH-HHHHHHHHH------------------HHHhCCHHHHHHHHHHHhc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-LSA-DV-LVWRTFLGA------------------CRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~-~~~~~ll~~------------------~~~~g~~~~a~~~~~~~~~ 686 (861)
+..+|..++.++|.+.+|.+...... ..| |+ +.+|..+-. -...+..+.|.+.|..+-+
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999988776652 333 22 222322211 1123356677777777776
Q ss_pred cCCC
Q 002975 687 QDPQ 690 (861)
Q Consensus 687 ~~p~ 690 (861)
..+.
T Consensus 798 ~~d~ 801 (1018)
T KOG2002|consen 798 NGDK 801 (1018)
T ss_pred cCCC
Confidence 6554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-14 Score=168.32 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=209.1
Q ss_pred cCCHHHHHHHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHH
Q 002975 436 SGRMEDARKAFESLFEK------NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKG 508 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 508 (861)
.+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.... .|+ ..+|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888877532 2346777888888899999999999998864 444 55777888888899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 509 EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
...++.+++.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99999988865 55678899999999999999999999998864 3 456788888899999999999999999988
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--------EHYACMVDLLGRSGSLTEALEFIRSM-PLS 655 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~ 655 (861)
..|+ ...+..+..++...|++++|+..|+...+ +.|+. ..++.....+...|++++|.+++++. ...
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4565 56888889999999999999999999873 33321 11222223444579999999999985 345
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 656 AD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 656 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|+ ...|..++..+...|++++|+..+++++++.+.....+ ....|.+|.++....++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 54 45788899999999999999999999999987644322 22345566666555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-14 Score=142.11 Aligned_cols=468 Identities=13% Similarity=0.105 Sum_probs=280.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--Ccchh-HHHHHHHHHcCCCCCcchHHHHHHHH
Q 002975 47 SNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSR--NFHLG-KLVHSLLTRSKLEPNSVILNSLISLY 123 (861)
Q Consensus 47 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~ 123 (861)
.+.+.....+|.+.++.-+|+.|.+.|+..+...-..|++.-+..+ ++.-+ ++.|-.|.+.|-. +..+|
T Consensus 119 E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW------- 190 (625)
T KOG4422|consen 119 ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW------- 190 (625)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-------
Confidence 3556677789999999999999999998888877666666544433 33323 4555556555533 33343
Q ss_pred hcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 124 SKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
+.|++.+ -+|+..| .+..++..||.|+++--..+.|.++|++-.....+.+..+||.+|.+-.- ..++.+.
T Consensus 191 -K~G~vAd--L~~E~~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv 261 (625)
T KOG4422|consen 191 -KSGAVAD--LLFETLP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLV 261 (625)
T ss_pred -ccccHHH--HHHhhcC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHH
Confidence 4566655 5566655 46678999999999999999999999999988889999999999977543 3347777
Q ss_pred hhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 002975 204 GFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283 (861)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (861)
.+|+... +.||.+++|+++....+ .|.++.|++. |++++.+|++-|+.|.-
T Consensus 262 ~EMisqk-m~Pnl~TfNalL~c~ak-fg~F~~ar~a---------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 262 AEMISQK-MTPNLFTFNALLSCAAK-FGKFEDARKA---------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHhh-cCCchHhHHHHHHHHHH-hcchHHHHHH---------------------------HHHHHHHHHHhCCCcch
Confidence 7887777 77777777777777777 7777666544 34455555555555555
Q ss_pred ccHHHHHHHHhccCCchH-HHHHHHHHHHh--C--CCC----ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC----
Q 002975 284 FTLSGVVSACSELELFTS-GKQLHSWAIRT--G--LAL----DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---- 350 (861)
Q Consensus 284 ~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~--g--~~~----~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---- 350 (861)
.+|..+|...++.++... +..+...+... | +.| |...+..-++.+.+..+ .+.|.++-.-+...
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d---~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD---LELAYQVHGLLKTGDNWK 389 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHcCCchh
Confidence 555555555555544432 22222222221 1 111 22223333444444444 44454444333211
Q ss_pred -------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCc
Q 002975 351 -------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDD 423 (861)
Q Consensus 351 -------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 423 (861)
...-|..+....++... .+.-+.+|+.|+-+-+-|+..+...++++....+.++...+++..++..|.....
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es-~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMES-IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 11234456666677666 8888999999988888899999999999999999999999999999887744333
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhc-CChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhc
Q 002975 424 CVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKN-LNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASS 501 (861)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~ 501 (861)
....-++..+++.. +.|+...-..+-...++. -++.++. .--.+|.+. .......+.++-.+.+
T Consensus 469 ~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHH
Confidence 33222222222211 122211111111111110 0111111 112223322 3344455555666677
Q ss_pred ccchHHHHHHHHHHHHhCCC-CchhHHH---HHHHHHHccCCHHHHHHHHHhccCCCchHHH----HHHHHHHhcCChHH
Q 002975 502 IGAIGKGEQIHARIIKSGFE-SNHCIYN---ALISMYSRCANVEAAFQVFKEMEDRNVISWT----SMITGFAKHGFAAR 573 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~ 573 (861)
.|..++|.++++.+.+.+-. |-....| -+++.-.+..+...|..+++-|...|..... .+...|.-+....+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~ 614 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKE 614 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHH
Confidence 77777787777777554322 2233334 4555556667777777777777655444333 33344444433344
Q ss_pred HHHHH
Q 002975 574 ALEIF 578 (861)
Q Consensus 574 A~~~~ 578 (861)
|+.-|
T Consensus 615 ~ls~l 619 (625)
T KOG4422|consen 615 ALSNL 619 (625)
T ss_pred HHhhh
Confidence 44433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-15 Score=171.37 Aligned_cols=327 Identities=10% Similarity=0.011 Sum_probs=265.5
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C-CeehHHHHHHH
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--K-NLVSYNTMVDA 463 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 463 (861)
+..-...++..+.+.|+++.|..++...+.....+ ......++......|++++|...|+++.. | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33445567778889999999999999998876444 44444555667779999999999999854 3 45678888899
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA 543 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 543 (861)
+.+.|++++|+..|++..... +.+...+..+...+...|+.++|...+..+..... .+...+..+. .+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHHH
Confidence 999999999999999998652 33456778888899999999999999998877653 3333443343 47889999999
Q ss_pred HHHHHhccCC----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHH----HHHHHH
Q 002975 544 FQVFKEMEDR----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISE----GWKHFR 614 (861)
Q Consensus 544 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 614 (861)
..+++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 2334455667889999999999999999984 465 5677789999999999986 799999
Q ss_pred HHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 615 SMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 615 ~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
...+ +.| +...+..+..++.+.|++++|+..+++.. ..| +..++..+..++...|+++.|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8873 445 45678889999999999999999999873 445 46678888999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 692 PAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 692 ~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
+..+..++.+|...|++++|.+.++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8878788999999999999999998876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-14 Score=165.66 Aligned_cols=364 Identities=11% Similarity=0.048 Sum_probs=246.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 321 ~~~li~~y~~~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
+..+...+...|+ +++|..+|++... .+...+..+...+...|+ .++|+..+++..+. .|+...+..+..+
T Consensus 52 ~~~lA~~~~~~g~---~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~-~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 52 YAAVAVAYRNLKQ---WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ-YDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4444455555444 6666666655422 233445556666666666 77777777777654 3322225556666
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee--------hHHHHHHHHH----
Q 002975 398 CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV--------SYNTMVDAYA---- 465 (861)
Q Consensus 398 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~---- 465 (861)
+...|+.+.|...++.+.+.. +.+...+..+..++.+.|..++|.+.++.... ++. ....++....
T Consensus 126 l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 667777777777777777664 33444555567777777888888888877654 211 1111222221
Q ss_pred -hcCCh---hHHHHHHHHHhhc-CCCCCHH-HHH----HHHHHhhcccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 002975 466 -KNLNS---EKAFELLHEIEDT-GVGTSAY-TFA----SLLSGASSIGAIGKGEQIHARIIKSGFE-SNHCIYNALISMY 534 (861)
Q Consensus 466 -~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y 534 (861)
..+++ ++|++.++.+... ...|+.. .+. ..+.++...++.++|...++.+.+.+.+ |+ .....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHH
Confidence 22234 7788888888754 2233321 111 1134456778999999999999887632 22 1223357789
Q ss_pred HccCCHHHHHHHHHhccCCC-------chHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---HHH
Q 002975 535 SRCANVEAAFQVFKEMEDRN-------VISWTSMITGFAKHGFAARALEIFYKMLADG-----------IKPNG---ITY 593 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~ 593 (861)
...|++++|+..|+++.+.+ ...+..+..++...|++++|+.+++++.+.. -.|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999876422 2345566778899999999999999998742 11232 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHh
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVH 671 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~ 671 (861)
..+...+...|+.++|+..++++.... +.+...+..+..++...|++++|++.+++.. ..|+ ...+..++..+...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 567778889999999999999998432 3356778889999999999999999999874 5565 56777788888999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchH
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
|+++.|+..++++++.+|+++.+.
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999997554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-13 Score=153.11 Aligned_cols=188 Identities=6% Similarity=0.047 Sum_probs=99.8
Q ss_pred HHHccCCHHHHHHHHHhccCCC--ch--HHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC-ChHHHHHHHHHHHhc
Q 002975 533 MYSRCANVEAAFQVFKEMEDRN--VI--SWTSMITGFAKHGFAARALEIFYKMLADGI----KP-NGITYIAVLSACSHA 603 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~a~~~~ 603 (861)
++.+.|++.++++.|+.+.... +. +-..+..+|...+++++|+.+|+++..... .| +......|.-|+...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3344455555555555554211 11 223344555555555555555555544210 11 122234455555555
Q ss_pred CCHHHHHHHHHHHHhhcC----------CCCCh---hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHG----------IVQRM---EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.++++. .+-|..++..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555543111 01211 223334555566666666666666653 233556666666666
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..|....|+..++.+..++|++......++.++.+.|+|++|.++.+.+.+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 6667777777766666666776666666666666667777776666655544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-11 Score=131.89 Aligned_cols=618 Identities=12% Similarity=0.138 Sum_probs=374.3
Q ss_pred hhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHH
Q 002975 54 LNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEAN 133 (861)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 133 (861)
...|+.++|.+++.+..... +.+...|..|-..+-..|+.+.+...+-.+....+. |...|..+-....+.|.++.|+
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence 34488999999988888765 456677888888888888888877665555444433 5578888888888888899998
Q ss_pred HHHHhcC--CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccC
Q 002975 134 KIFKSMG--NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGY 211 (861)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 211 (861)
-.|.+.- .+++....---...|-+.|+...|++-|.++.......|..-+..++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~--------------------- 286 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV--------------------- 286 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH---------------------
Confidence 8888762 22343333344566778888888888888887653211212122222111
Q ss_pred CCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCC------
Q 002975 212 FDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE-----KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFL------ 280 (861)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------ 280 (861)
+..|.. .++-+.|.+.++.... -+...+|.++..|.+...++.|......+......
T Consensus 287 -----------~~~~~~-~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 287 -----------AHYFIT-HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred -----------HHHHHH-hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 111111 2222344444433322 12334556666666666666666666665541111
Q ss_pred ----------------CCcccHH----HHHHHHhccCCchHHHHHHHHHHHhC--CCCccchHHHHHHHHHhCCCCCCHH
Q 002975 281 ----------------PDRFTLS----GVVSACSELELFTSGKQLHSWAIRTG--LALDVCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 281 ----------------pd~~t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~g~~~ 338 (861)
|+...|. -+.-++......+....+...+.... +.-++..+.-+.++|...|. +.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~---~~ 431 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK---YK 431 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc---HH
Confidence 2222222 12233445566666666777777766 34456678888899999777 99
Q ss_pred HHHHHHhccCCC----CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHH
Q 002975 339 DSRKVFDRMLDH----NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 339 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (861)
+|.++|..+... +...|-.+...|...|. .++|.+.|.+.... .|+ ...-.++-..+.+.|+.++|.+++..
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGE-YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999988553 56789999999999998 99999999998774 453 33445566677888999999999888
Q ss_pred HH--------HcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC--------------------------CeehHHH
Q 002975 414 AV--------KRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK--------------------------NLVSYNT 459 (861)
Q Consensus 414 ~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~ 459 (861)
+. ..+..|+....--..+.|.+.|+.++=..+-..|..+ .......
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 53 2334555556666777888888877744443333110 1111222
Q ss_pred HHHHHHhcCChhHHH------HHHHHHhhcCCCCCHH--HHHHHHHHhhcccchHHHHHHHHHHHHhCC--CCch---hH
Q 002975 460 MVDAYAKNLNSEKAF------ELLHEIEDTGVGTSAY--TFASLLSGASSIGAIGKGEQIHARIIKSGF--ESNH---CI 526 (861)
Q Consensus 460 li~~~~~~g~~~~A~------~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~ 526 (861)
.+.+-.+.++..... ..+.--...|+.-+.. -+.-++...++.++.++|..+...+..... .++. ..
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 233333322211111 1111111223333322 345566778888999999988887766432 2222 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccCC-----Cc---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMEDR-----NV---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAV 596 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 596 (861)
-...+.+....+++..|...++.|... ++ ..||...+.+.+.|+-.--..++..... ..|+. ......
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~ 746 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIY 746 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeee
Confidence 344556667788899998888887743 33 4777766777776654444444444333 23332 222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH-HHHHHhh----------hcCCHHHHHHHHHhCC--CCC--CHHHH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA-CMVDLLG----------RSGSLTEALEFIRSMP--LSA--DVLVW 661 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~----------r~g~~~eA~~~~~~~~--~~p--~~~~~ 661 (861)
..-....+.+.-|++++-... ...|+...++ ||.-++. |.-.+-.+..++++.. ..+ ...+.
T Consensus 747 gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~ 823 (895)
T KOG2076|consen 747 GHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAF 823 (895)
T ss_pred chhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 222345677888888665554 3445533332 2222221 2223444555654431 122 45677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC------------chHHHHHHHHHHcCChhHHHHHHHH
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDP------------AAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
..++.+|...|-+..|+..|+++++..|.+. .+-..|.-||-..|+..-|..+.++
T Consensus 824 YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 824 YNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 7899999999999999999999999976532 2344678899999999999888763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-12 Score=139.51 Aligned_cols=567 Identities=12% Similarity=0.043 Sum_probs=331.1
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCC
Q 002975 64 FTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKR 143 (861)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 143 (861)
.++..+...|+.|+.+||.++|..|+..|+.+.|- +|..|.-....-+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 34566778899999999999999999999999998 9999988888888899999999999999887655 37
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHH-HH-------HcCCCCCcccHHHH--------------HHHhcCCcchhhhhh
Q 002975 144 DIVSWSSMISSYVNRGKQVDAIHMFVE-ML-------ELGFCPNEYCFSAV--------------IRACSNTENVAIGHI 201 (861)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~l--------------l~~~~~~~~~~~a~~ 201 (861)
-..+|..|..+|.+.|+... ++..++ |. ..|+.....-|-.- +......|-++.+.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 332222 22 12322111111111 111222233333333
Q ss_pred hhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 002975 202 IYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE-KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFL 280 (861)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 280 (861)
++..+....... ++.. .+.-.......+++-........+ ++..++.+++..-.-+|+.+.|..++.+|.+.|+.
T Consensus 161 ll~~~Pvsa~~~--p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 161 LLAKVPVSAWNA--PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHhhCCcccccc--hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333332222001 1111 122222212233333333333333 78999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHH
Q 002975 281 PDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIIT 360 (861)
Q Consensus 281 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~ 360 (861)
.+..-|..+|-+ .++......+..-|...|+.|+..++...+-...+.|. ...+....+.-..-....+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~---t~~~~e~sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ---TKYGEEGSQLAHGFTAAVRSAACR 310 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh---hhhcccccchhhhhhHHHHHHHhc
Confidence 999888888765 78888888899999999999999998877766655333 332222111100001112222222
Q ss_pred HHHhcCC----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHc
Q 002975 361 GYVQSGG----RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARS 436 (861)
Q Consensus 361 ~~~~~g~----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 436 (861)
+...+.. ...-....+.+..-.|+......|..... ....|.-+..+++-+.+..-- ...-+.-+++|.
T Consensus 311 g~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt----~r~s~~~V~a~~-- 383 (1088)
T KOG4318|consen 311 GLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPT----LRDSGQNVDAFG-- 383 (1088)
T ss_pred ccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCc----cccCcchHHHHH--
Confidence 2111111 01111222222222344333333322222 223566677777766664322 111122222221
Q ss_pred CCHHHHHHHHHhcCCCCee-hHHHHHHHHHh---cCChhHHHHHHHHH------------hhc----CCCC-------CH
Q 002975 437 GRMEDARKAFESLFEKNLV-SYNTMVDAYAK---NLNSEKAFELLHEI------------EDT----GVGT-------SA 489 (861)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~----g~~p-------~~ 489 (861)
+.+.++|.+...+... .++ .-.+... .....+..++.... ... -..| -.
T Consensus 384 ---~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 384 ---ALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred ---HHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 2334445444333221 111 1111111 11111122211111 100 0111 11
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc------hHHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV------ISWTSMIT 563 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~ 563 (861)
..-+.++..|++.-+..+++..-+.....-+. ..|..||+.+....+.++|....++...+|. .-+..+..
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 23345666777776777766555444433222 5788999999999999999999999886654 45677888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 564 GFAKHGFAARALEIFYKMLADGI-KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.+.+....+..+++++.+.-. .|+ ..++.-++..-...|+.+.-.++++-+. .+|+.-+ .-++....+.++
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccc
Confidence 88999999999999999987532 333 4567778888888899888888888776 5555442 345566677888
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
...|.+..+... .+|.+.....+....+
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHH
Confidence 888777765442 3444443344444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-12 Score=129.59 Aligned_cols=444 Identities=15% Similarity=0.139 Sum_probs=271.6
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhc--CCcchhhhh-hhhhhhhhccCCCCchhHHHH
Q 002975 145 IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACS--NTENVAIGH-IIYGFLLKCGYFDSDVCVGCA 221 (861)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~~ 221 (861)
+++=|.|+. ...+|...++.-+|+.|+..|+..+...--.+++..+ ...++-.++ +.|-.+.+.| +....+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence 445555555 3456788888888999988888777776666665433 222322222 2333444444 2233333
Q ss_pred HHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchH
Q 002975 222 LIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTS 301 (861)
Q Consensus 222 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 301 (861)
| .|++.+ -+|+ ...++..++..||.|+++--..+.|.+++++-.....+.+..+||.+|.+.+- ..
T Consensus 191 ------K-~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ------K-SGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ------c-cccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 2 555444 4444 44456789999999999999999999999999988889999999999987543 33
Q ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 002975 302 GKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQ 381 (861)
Q Consensus 302 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 381 (861)
++++..+|+.....||..++|+++...++.|+ ++.|++ .|++++.+|++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~---F~~ar~----------------------------aalqil~EmKe 305 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGK---FEDARK----------------------------AALQILGEMKE 305 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc---hHHHHH----------------------------HHHHHHHHHHH
Confidence 48899999999999999999999999999887 777653 34455555555
Q ss_pred CCCCCChhhHHHHHHHhcccCChHH-HHHHHHHHHH----cCCC----CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002975 382 GQVAPNHFTFASVLKACGNLLDSNV-AEQVYTHAVK----RGRA----LDDCVGNSLISMYARSGRMEDARKAFESLFEK 452 (861)
Q Consensus 382 ~g~~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 452 (861)
-|+.|...+|..+|..+.+.++..+ +..+..++.. ..+. .|...+...++.+.+..+.+-|.++-.-....
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 5555555555555555555444422 2222222211 1111 12223333444444555555554444333211
Q ss_pred --------C---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCC
Q 002975 453 --------N---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFE 521 (861)
Q Consensus 453 --------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 521 (861)
+ ..-|..+....++....+..+..|..|.-.-+-|+..+...+++|....+.++-..+++..++..|..
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 1 12355677777888888888999999988888899999999999999999999999999988887754
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhc-CChHHH-HHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKH-GFAARA-LEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
.......-+...+++.. ..|+...-..+-...++. -++.++ ...-.+|.+....|. ..+.++..
T Consensus 466 ~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~L 531 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAIL 531 (625)
T ss_pred hhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHH
Confidence 44333333333333221 012212111111111110 112222 122344555444443 34444555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHH---HHHHHhhhcCCHHHHHHHHHhC
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYA---CMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
+.+.|..++|+++|....+...-.|.....+ -+++.-.+....-.|...++-|
T Consensus 532 l~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 532 LLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6788888888888888754544444444444 4455556677777888877776
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-12 Score=144.85 Aligned_cols=437 Identities=11% Similarity=0.045 Sum_probs=244.7
Q ss_pred HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCcee-HHHH--HHHHHhcCChhHHH
Q 002975 89 IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVS-WSSM--ISSYVNRGKQVDAI 165 (861)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~ 165 (861)
.+.|++..|...+..+.+..+.....++ .++..+...|+.++|+..+++.-. |+... +..+ ...|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666665555433212233 555666666777777777766653 32222 2222 33555667777777
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 166 HMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
++|+++.+.. |.+..++..++..|.. .++.++|++.++++..
T Consensus 123 ely~kaL~~d-------------------------------------P~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 123 ALWQSSLKKD-------------------------------------PTNPDLISGMIMTQAD-AGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHhhC-------------------------------------CCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcc
Confidence 7777766532 3333344444455555 5666666666666554
Q ss_pred CCcchHHHHHHHHHh--cCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHH
Q 002975 246 KNTVGWTLMITRCTQ--LGCPRDAIRLFLDMILSGFLPD-RFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGC 322 (861)
Q Consensus 246 ~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 322 (861)
.+......+..++.. .++..+|++.++++.+. .|+ ...+...+.++.+.|-...|.++... .|+.++-.
T Consensus 165 ~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~ 236 (822)
T PRK14574 165 RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAE 236 (822)
T ss_pred cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHH
Confidence 332222223333333 44454577777777664 343 33445555566666655555544433 12222111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhC-CCCCCh-h----hHHHHHH
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG-QVAPNH-F----TFASVLK 396 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~-g~~p~~-~----t~~~ll~ 396 (861)
.....- .+.|.+..+.-..++.. .-.-|. . .+.|+.-++.+... +-.|.. . ...-.+-
T Consensus 237 ~~~~l~--------~~~~a~~vr~a~~~~~~----~~~r~~---~-~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 237 HYRQLE--------RDAAAEQVRMAVLPTRS----ETERFD---I-ADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHH--------HHHHHHHHhhccccccc----chhhHH---H-HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 111100 22222222111100000 000000 1 45555556665431 222321 1 1223455
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---------CeehHHHHHHHHHhc
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---------NLVSYNTMVDAYAKN 467 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 467 (861)
++...++..++.+.++.+...|.+....+..++.++|...++.++|..+|+++... +......|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 66777888888888888888887766778888888888888888888888887332 122246678888888
Q ss_pred CChhHHHHHHHHHhhcCC-------------CCCHHH-HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 468 LNSEKAFELLHEIEDTGV-------------GTSAYT-FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
+++++|..+++++.+... .||-.. +..+...+...|++.+|++.++.+.... +-|..+...+.+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 889999888888876311 122222 2334455667777777777777776654 6677777777777
Q ss_pred HHccCCHHHHHHHHHhcc--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 002975 534 YSRCANVEAAFQVFKEME--DR-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
+...|.+.+|++.++... .| +..+....+.++...|++.+|..+.+.+.+ ..|+...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~ 519 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIP 519 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchh
Confidence 777777777777776554 23 344555566666677777777777777777 5566543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-10 Score=119.50 Aligned_cols=507 Identities=13% Similarity=0.089 Sum_probs=362.0
Q ss_pred hhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002975 200 HIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE--K-NTVGWTLMITRCTQLGCPRDAIRLFLDMIL 276 (861)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (861)
..++...++. +|.++..|-.-+. .-..++|+.++.+..+ | +.. |.-+|++..-++.|..+++..++
T Consensus 366 ~RVlRKALe~--iP~sv~LWKaAVe-----lE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSVRLWKAAVE-----LEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHh-----ccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 4666666665555 3334556666666554 2 223 33455666677778888777766
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHH----HhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---
Q 002975 277 SGFLPDRFTLSGVVSACSELELFTSGKQLHSWAI----RTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD--- 349 (861)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~--- 349 (861)
. ++.+...+.+.-..=-..|+.+....|....+ ..|+..+..-|-.=...+-..|. +-.+..+......
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags---v~TcQAIi~avigigv 510 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS---VITCQAIIRAVIGIGV 510 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC---hhhHHHHHHHHHhhcc
Confidence 4 55566666655555556677777777665543 34555544444333333333333 5555555544421
Q ss_pred --CC-cccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchh
Q 002975 350 --HN-VMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVG 426 (861)
Q Consensus 350 --~~-~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 426 (861)
.| -.+|+.-...|.+.+. ++-|..+|....+. .+-+...|.-....=-..|..+....+++.++..- +-....+
T Consensus 511 Eeed~~~tw~~da~~~~k~~~-~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lw 587 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILW 587 (913)
T ss_pred ccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHH
Confidence 22 3578888888888887 88888888887663 23345556555555556688888888888887764 3444555
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc
Q 002975 427 NSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 503 (861)
-....-+-..|++..|+.++....+. +...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 55666677789999999998887443 445788888888899999999999998885 4566666666666666678
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
..++|.++++..++. ++.-...|-.+...|-..++++.|.+.|..-.+ |+ +..|-.|...--+.|+.-+|..+|++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999888886 355577888999999999999999999987664 44 45788787777888999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHH
Q 002975 581 MLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLV 660 (861)
Q Consensus 581 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~ 660 (861)
.+-.+ +-|...|...+..-.+.|..++|..+..+..++ .+.+-..|.--|-+..+.++-..+.+.+++... |+-+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--Cchh
Confidence 88854 335678899999999999999999988887643 344556788888899999988888888888644 4455
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEe
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEA 734 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 734 (861)
.-+....+.....++.|..-|+++++.+|++..++..+-..+...|.-++-.++++..... .+.-|..|+-+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 5667777788888999999999999999999999999999999999999999998866542 22335666543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-10 Score=115.68 Aligned_cols=490 Identities=13% Similarity=0.097 Sum_probs=379.1
Q ss_pred HHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCc
Q 002975 188 RACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCP 264 (861)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 264 (861)
++.....+.+.|+-++..+++.- +.....|.+|.. ...++.|.+++....+ .+...|-+-...=-.+|+.
T Consensus 384 KaAVelE~~~darilL~rAvecc--p~s~dLwlAlar-----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC--PQSMDLWLALAR-----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc--cchHHHHHHHHH-----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 44445566666888888888763 666666665544 4456788888876654 4677787776666778888
Q ss_pred hHHHHHHHH----HHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc--cchHHHHHHHHHhCCCCCCHH
Q 002975 265 RDAIRLFLD----MILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALD--VCVGCSLVDMYAKCTVDGSVD 338 (861)
Q Consensus 265 ~~A~~l~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~g~~~ 338 (861)
+....+..+ +...|+..+...+..=-.+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+. ++
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~---~~ 533 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA---IE 533 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch---HH
Confidence 888777654 56778888888888888888888998888999888888887543 3466666677777666 99
Q ss_pred HHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHH
Q 002975 339 DSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAV 415 (861)
Q Consensus 339 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 415 (861)
-|+.+|....+ .+...|...+..--..|. .++-..+|++.... ++-....+....+..-..|+...|+.++..+.
T Consensus 534 carAVya~alqvfp~k~slWlra~~~ek~hgt-~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999887755 355678777766666677 88999999998875 33344455555566667799999999999998
Q ss_pred HcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-HHH
Q 002975 416 KRGRALDDCVGNSLISMYARSGRMEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA-YTF 492 (861)
Q Consensus 416 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 492 (861)
+.. +.+..++-+-+..-....+++.|+.+|.+.. .+....|.--+..---.++.++|++++++..+. -|+- ..|
T Consensus 612 ~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~ 688 (913)
T KOG0495|consen 612 EAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW 688 (913)
T ss_pred HhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence 876 4477888899999999999999999999874 345567777677777789999999999888764 4554 467
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcC
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHG 569 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 569 (861)
..+...+-+.++++.|...|..-.+. ++..+..|-.|.+.=-+.|.+-.|..+|+...- .|...|-..|..-.+.|
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 77778888899999999888766554 356678899999999999999999999998763 46789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
..++|..+..+.++. ++.+...|.--|...-+.++-......++ ...-|..+.-.+..++....+++.|.+.|
T Consensus 768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888875 44456778777777766666444444433 23456666777888999999999999999
Q ss_pred HhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 650 RSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 650 ~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.+.. ..|| ..+|--+...+..||.-+.-+.++.+....+|.....+...+.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9874 4454 5688889999999999999999999999999998777766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=129.99 Aligned_cols=515 Identities=14% Similarity=0.111 Sum_probs=279.9
Q ss_pred chHHHHHHHhhcCChhHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchH-HHH
Q 002975 45 PLSNRLIYHLNDGRVQKAIFTLDLMTQK----GNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVIL-NSL 119 (861)
Q Consensus 45 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 119 (861)
.+...+-..-..|+-+.|+.-.++-... +...+...+..|.+-|.......+|+..++.+++...-|+.... -.+
T Consensus 164 ~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni 243 (840)
T KOG2003|consen 164 DFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI 243 (840)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee
Confidence 4555555556677777776655543322 33344455556666676677788899889988887766665433 234
Q ss_pred HHHHhcCCChHHHHHHHHhc-CCCCC------ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 120 ISLYSKCGDLNEANKIFKSM-GNKRD------IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 120 l~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
-+.+.+.+.+..|++.++-. .+.|+ ....|.+-..+.+.|++++|+.-|+...+. .|+..+--.++-.+..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 56678888899998887543 11122 123455555678899999999999887664 5776654444444455
Q ss_pred CcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHH-----HHHHHHhcC--Cch
Q 002975 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTL-----MITRCTQLG--CPR 265 (861)
Q Consensus 193 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g--~~~ 265 (861)
.|+.+..++.|..++... ..+|-.- |.+ . -..|+....|- ++.-.-+.. +.+
T Consensus 322 i~d~ekmkeaf~kli~ip-~~~dddk-------yi~-~------------~ddp~~~ll~eai~nd~lk~~ek~~ka~ae 380 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIP-GEIDDDK-------YIK-E------------KDDPDDNLLNEAIKNDHLKNMEKENKADAE 380 (840)
T ss_pred cCcHHHHHHHHHHHhcCC-CCCCccc-------ccC-C------------cCCcchHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 678888888888887654 1111110 111 0 00111111111 111111111 111
Q ss_pred HHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHH
Q 002975 266 DAIRLFLDMILSGFLPDRF-TLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVF 344 (861)
Q Consensus 266 ~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~ 344 (861)
+++-.-.++..--+.||-. -|...+..+-.....+.|..+ .. .-..-|.+.|+ ++.|.+++
T Consensus 381 k~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-------------ei--~ka~~~lk~~d---~~~aieil 442 (840)
T KOG2003|consen 381 KAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-------------EI--NKAGELLKNGD---IEGAIEIL 442 (840)
T ss_pred HHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-------------hh--hHHHHHHhccC---HHHHHHHH
Confidence 2222112222222233311 111111111111111111111 00 11223566666 88888777
Q ss_pred hccCCCCcccH-----HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCC
Q 002975 345 DRMLDHNVMSW-----TAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGR 419 (861)
Q Consensus 345 ~~~~~~~~~~~-----~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 419 (861)
.-...+|..+- |.-.--|.+-|+++..|.+.-+...... +-|....+.--+.....|+++.|.+.+.+.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 76665543322 2222334445555666666555443221 11111111111223345777778777777766543
Q ss_pred CCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 420 ALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
......||. .-.+-+.|++++|+++|-.+ ...+......+.+.|-...+...|++++-+.... ++.|+..++.|.
T Consensus 522 sc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 333333332 22355677777777777665 2344555556666677777777777777555432 444566666777
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc--cCCCchHHHHHHHH-HHhcCChHH
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM--EDRNVISWTSMITG-FAKHGFAAR 573 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~-~~~~g~~~~ 573 (861)
..|-+.|+-.+|.+.|-.--+. ++.+..+...|...|....-+++|+..|++. .+|+..-|..||.. +.+.|++.+
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 7777777777777666443332 4666677777777777777777777777654 36777777776644 345677777
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 574 ALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 574 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
|+++|++.... ++-|..+..-|+..|...|.
T Consensus 679 a~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 77777776653 34455566666666665554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=150.38 Aligned_cols=253 Identities=17% Similarity=0.189 Sum_probs=110.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH-HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS-LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455566666667666654443322344333333 3334455667777777777776654 3356667777776 68888
Q ss_pred HHHHHHHHHhcc--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 540 VEAAFQVFKEME--DRNVISWTSMITGFAKHGFAARALEIFYKMLADG-IKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 540 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
+++|.+++.... .++...+..++..+.+.|+++++..+++++.... .+++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887664 3566777888888889999999999999887643 2345667788888889999999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 617 YDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 617 ~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+ ..|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++++.+|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 83 3564 6677888899999999998877776653 2445668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
....++.++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-11 Score=134.09 Aligned_cols=327 Identities=14% Similarity=0.134 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+--. ...|...|..+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666554 344455556666666666666665554332 23344556666666666666666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHccCCHHHHHHHHHhccC--
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNA----LISMYSRCANVEAAFQVFKEMED-- 552 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~~~~-- 552 (861)
+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 665442 23333333444455566666666666666655432222222222 23444555555666666655442
Q ss_pred ---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCChHHHHHHHHHHHh
Q 002975 553 ---RNVISWTSMITGFAKHGFAARALEIFYKMLADG---------------------------IKPNGITYIAVLSACSH 602 (861)
Q Consensus 553 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~ 602 (861)
-+...++.++..|.+..+++.|......+.... +.++...+ -+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhc
Confidence 123455666666666666666666666655511 22222121 12222333
Q ss_pred cCCHHHHHHHHHHHHhhcC--CCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhCCHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHG--IVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA---DVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a 677 (861)
....+....+..... ... ..-+...|.-+.++|...|++++|++++..+...| +..+|--++..+...|..+.|
T Consensus 390 L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 333333332332232 445 33456789999999999999999999999885333 577999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEE
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWI 732 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 732 (861)
.+.+++++.++|++..+-+.|+.+|...|+.++|.++...+-.-+-++.++|.|-
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999999999999999999999999999999999998876666666778774
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-12 Score=125.42 Aligned_cols=272 Identities=12% Similarity=0.160 Sum_probs=194.1
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCeehHHH----H-HHHHHhc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccch
Q 002975 432 MYARSGRMEDARKAFESLFEKNLVSYNT----M-VDAYAKN-LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAI 505 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l-i~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 505 (861)
-|.+.|+++.|.+++.-...+|..+-++ | +--|.+. .++..|.+.-+...... +-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3567777777777776665554432222 1 1122232 34555555544443221 12222222222333456788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
++|.+.+...+...-.-....|| +.-.|-+.|++++|++.|-.+. ..++.....+.+.|-...+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888888777654222223333 3335678899999999987664 4677777788889999999999999998877
Q ss_pred HcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHH
Q 002975 583 ADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLV 660 (861)
Q Consensus 583 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~ 660 (861)
. +.| |+....-|...|-+.|+-.+|.+++..-- .-++-++++..-|...|....-.++|+.+|++.. ..|+..-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 566 46788889999999999999998776532 1344477888888888899999999999999975 8999999
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 661 WRTFLGAC-RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 661 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
|.-++..| ++.|++..|...++......|.|......|..+....|.-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999887 67799999999999999999999999999999988888643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-11 Score=127.60 Aligned_cols=532 Identities=12% Similarity=0.069 Sum_probs=262.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 166 HMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 166 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
.++..|...|+.|+.+||..+|..||..|+.+.|- ++..|.-.. .+-...+++.++..... .++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~-And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKE-ANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccc-cccccCCC-------C
Confidence 45667778888888888888888888888888887 887777666 67777788888887777 77766655 6
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHH-HHH-------CCCCCCcccHHHHHHHHhccC-C------chHHHHHHHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLD-MIL-------SGFLPDRFTLSGVVSACSELE-L------FTSGKQLHSWAI 310 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~i~~~~~ 310 (861)
|...+|+.|..+|.+.|+... ++..++ |.. .|+.--..-|...+.+|-..- + ..--+.+++..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888655 333322 211 122111111111111111100 0 000111222222
Q ss_pred HhCCCCccchHHHHHHHHHhCCC--CCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 002975 311 RTGLALDVCVGCSLVDMYAKCTV--DGSVDDSRKVFDRMLD-HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN 387 (861)
Q Consensus 311 ~~g~~~~~~~~~~li~~y~~~g~--~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~ 387 (861)
+.+....+..++.-...+.+... ...+++-........+ ++..++.+.+..-..+|+ .+.|..++.+|++.|++.+
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~-~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD-VDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc-hhhHHHHHHHHHHcCCCcc
Confidence 22211100000000000011000 0002222222222222 566666666666666666 6777777777777776666
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhc
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKN 467 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 467 (861)
..-|-.++-+ .++...++.++..|...|+.|+..++..-+-...+.|....+.+..+.-.--....+..+..+...+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 6655555543 5666666666666666777776666665555554444322221111100000011122222221111
Q ss_pred C-----ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHccCC
Q 002975 468 L-----NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF---ESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 468 g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~ 539 (861)
. ...-....+++..-.|+......|..... ....|.-+...++.+.+..-.. ..++..+..+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~--------- 385 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL--------- 385 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH---------
Confidence 1 11111222222222333322222222211 1224555555555555532111 1112222222
Q ss_pred HHHHHHHHHhccCCCch-HHHHHHHHHHh---cCChHHHHHHHHHH------------HH----cCCCC-------ChHH
Q 002975 540 VEAAFQVFKEMEDRNVI-SWTSMITGFAK---HGFAARALEIFYKM------------LA----DGIKP-------NGIT 592 (861)
Q Consensus 540 ~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------~~~t 592 (861)
+.+.|.+...+... .++ .-.+... ..+..+..++.... .. .-..| -...
T Consensus 386 ---lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 386 ---LRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ---HHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 23334433332211 111 1111111 11111111111111 00 00111 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 002975 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-----LSADVLVWRTFLGA 667 (861)
Q Consensus 593 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~ 667 (861)
-..++..|...-+..+++..-+... .+-+ + ..|..||+.+.+..++++|..+..+.. ..-|..-+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 2334444444444444443222221 2111 1 568999999999999999999998874 22244566677888
Q ss_pred HHHhCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeE
Q 002975 668 CRVHGDTELGKHAAEMILE---QDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSW 731 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 731 (861)
..+++....+..+.+...+ ..|.-......+-|--+..|+.+...+..+.+...|+.- .|.-|
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888888888877776665 334445566677778888999999999999888888765 34444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=117.24 Aligned_cols=340 Identities=12% Similarity=0.084 Sum_probs=227.1
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHH--HHHHHhcccCChHHHHHHHHH
Q 002975 336 SVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFA--SVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~ 413 (861)
..+.|+..|......-+..|.+.+...--... .+.+. ... .|...|...+. .+..++....+.+++.+-...
T Consensus 179 ~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-~e~~~----~l~-~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~ 252 (559)
T KOG1155|consen 179 LLSLAIDSFVEVVNRYPWFWSAWLELSELITD-IEILS----ILV-VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER 252 (559)
T ss_pred hHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-HHHHH----HHH-hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888776656666655443222222 22221 111 12222222222 233455555566777777777
Q ss_pred HHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 414 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
....|++.+...-+-...+.-...+++.|+.+|+++.+.|+.- --|..||+
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-----------------------------l~dmdlyS 303 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-----------------------------LDDMDLYS 303 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----------------------------chhHHHHh
Confidence 7777766665555544445555555555555555554333210 01333444
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC---chHHHHHHHHHHhcCC
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN---VISWTSMITGFAKHGF 570 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~ 570 (861)
.++-.-.....+.---+....+- +--+.|...+.+.|+-.++.++|...|+...+-| ...|+.|..-|....+
T Consensus 304 N~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 44432222111111111111111 2234567778888998999999999999887533 4689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
...|++-+++.++ +.| |...|..|.++|.-.++..=|+-+|++.. .+.| |...|.+|.+.|.+-++++||++.
T Consensus 380 t~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 380 THAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred cHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999998 556 67799999999999999999999999877 5556 667899999999999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 649 IRSMPL--SADVLVWRTFLGACRVHGDTELGKHAAEMILE-------QDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 649 ~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
|++.-. .-+...+..|...+...++.++|.+.+++.++ .+|+-..+...|++-+.+.++|++|...-....
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 998742 33457888999999999999999999999887 445455566679999999999999988665443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-12 Score=132.04 Aligned_cols=242 Identities=12% Similarity=0.142 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHH-HHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG--FESNHCIYNALISMYSRCANVE-AAFQV 546 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~-~A~~~ 546 (861)
..+|+..|..... .+.-+......+..+|...+++++++.+|+.+.+.. .-.+..+|++.+--+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555322 222233444555556666666666666666655432 1123444544442221110000 01111
Q ss_pred HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 547 FKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 547 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
.+.. ...+.+|-++..+|.-+++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|...|+... ..+
T Consensus 414 i~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 IDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred HhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 1111 22345666666666666666666666666666 5553 4455555555555566666666665544 234
Q ss_pred hhHHHHH---HHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 626 MEHYACM---VDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 626 ~~~~~~l---~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..||+++ .-.|.|+++++.|+-.|+++. ..| +.++...+...+.+.|+.|+|.+.+++++.++|.|+-.-+.-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4455443 335666666666666666652 444 34444445555666666666666666666666666666666666
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002975 701 LYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~ 720 (861)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=130.67 Aligned_cols=275 Identities=14% Similarity=0.097 Sum_probs=218.3
Q ss_pred CHHHHHHHHHhcCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHH
Q 002975 438 RMEDARKAFESLFEK--NLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 438 ~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
+..+|...|..++.. |.. ....+..+|...+++++|.++|+.+.+.. ..-+..+|.+++.-+-+.-.+. .+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHH
Confidence 467888888886442 333 33456678888999999999999988653 1235667888776554322111 112
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR---NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+.+++.. +..+.+|-++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 2333333 567899999999999999999999999998864 457888888889999999999999999887 6776
Q ss_pred h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002975 590 G-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFL 665 (861)
Q Consensus 590 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll 665 (861)
. ..|..+...|.+.++++.|.-.|+... .+.|. .....++...+.+.|+.|+|+++++++- ..| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 588899999999999999999999887 77785 4556777889999999999999999983 333 555555566
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
..+...+++++|.+.+|++.++-|+++..|.+|+.+|...|+.+.|..-+..+.+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 67778899999999999999999999999999999999999999999888877653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-10 Score=112.32 Aligned_cols=213 Identities=17% Similarity=0.155 Sum_probs=167.1
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
-.|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|++..+ .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777777778877776532 233366666778888888888888887763 4566777777777778889999999
Q ss_pred HHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 002975 578 FYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLS 655 (861)
Q Consensus 578 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~ 655 (861)
|++.+. +.|+ ...|..+.-+..+.+.++++...|+..++++ +-.++.|+-....+..+++++.|.+.++.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 6776 4578888778888899999999999988654 445677888889999999999999999875 344
Q ss_pred CC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 656 AD---------VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 656 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
|+ +.+-.+++-.-. .+|+..|+.+++++++++|....+|..|+.+-..+|+.++|.+++++.-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 334444443333 3899999999999999999999999999999999999999999998653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=125.64 Aligned_cols=274 Identities=10% Similarity=0.052 Sum_probs=187.6
Q ss_pred cCCHHHHHHHHHhcCCC--Ce-ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH--HHHHHhhcccchHHHHH
Q 002975 436 SGRMEDARKAFESLFEK--NL-VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA--SLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 510 (861)
.|+++.|++.+....+. ++ ..|........+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777666655432 12 22222233346777888888888877643 44443222 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc-----------hHHHHHHHHHHhcCChHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV-----------ISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877765 55677778888888888888888888887764221 133333433344445556666666
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-C
Q 002975 580 KMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-D 657 (861)
Q Consensus 580 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~ 657 (861)
++-+. .+.+......+..++...|+.++|...++...+ ..|+.... ++......|+.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65432 334566778888889999999999999888773 34444322 2223335588999998888763 344 5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+..+.++...|...|++++|...++++++.+|++ ..|..|+.++.+.|+.++|.+.+++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677888899999999999999999999999975 557789999999999999999888553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=123.71 Aligned_cols=246 Identities=15% Similarity=0.113 Sum_probs=110.0
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchh--hHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChh
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVG--NSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSE 471 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 471 (861)
+..+.|+++.+.+.+..+.+. .|+.... ......+...|+++.|...++++.+. +......+...|.+.|+++
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 335556666666666655543 2232221 12345666667777777766666332 3345566666777777777
Q ss_pred HHHHHHHHHhhcCCCCCHH-------HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 472 KAFELLHEIEDTGVGTSAY-------TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+|.+++..+.+.+..++.. +|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777776655432221 1111222212222222222333322111 1234444444444455555555555
Q ss_pred HHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 002975 545 QVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV 623 (861)
Q Consensus 545 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 623 (861)
+++++..+.....--.++.+....++.+++++..++..+ -.|| ...+..+...|.+.|++++|.+.|+.+. ...
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~ 358 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQR 358 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC
Confidence 444444321111111122222333444444444444444 2233 2234444444444445555555444444 223
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 624 QRMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
|+...|..+..++.+.|+.++|.++++
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-08 Score=102.08 Aligned_cols=346 Identities=10% Similarity=0.057 Sum_probs=205.5
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCccc-HHHHHHHHHhcCCChHH
Q 002975 293 CSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMS-WTAIITGYVQSGGRDKE 371 (861)
Q Consensus 293 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~~ 371 (861)
..+.|....|...+..++.. -+..|.+.+....-+.+ .+.+..+....+..+... ---+..+|-.... .++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~---~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q-~~e 245 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITD---IEILSILVVGLPSDMHWMKKFFLKKAYQELHQ-HEE 245 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhch---HHHHHHHHhcCcccchHHHHHHHHHHHHHHHH-HHH
Confidence 44566667777666655432 12334444433333333 555555444444332111 1123345555555 778
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCC--CCCcchhhHHHHHHHHcCCHHH-HHHHHHh
Q 002975 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGR--ALDDCVGNSLISMYARSGRMED-ARKAFES 448 (861)
Q Consensus 372 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 448 (861)
+++-.......|..-+...-+....+.-...|+++|+.+|+++.+... -.|..+|+.++-.-..+.++.- |..++ .
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~ 324 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-N 324 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-H
Confidence 888888887777765555555555566678899999999999988742 2244555555433322222221 22222 2
Q ss_pred cCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 449 LFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 449 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
+.+--+.|...+.+-|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-+..+++.+ +.|-..|-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence 222234556666677777778888888888877543 2233455566666777777777777777777665 55677777
Q ss_pred HHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 002975 529 ALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL 605 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 605 (861)
.|..+|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHh
Confidence 77777777777777777777655 2466777777777777777777777777777655 3355667777777777777
Q ss_pred HHHHHHHHHHHHhhc---CC-CC-ChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 606 ISEGWKHFRSMYDEH---GI-VQ-RMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~---~~-~p-~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
.++|.++|..-++.. |. .| ......-|..-+.+.+++++|.....
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 777777776655322 21 22 11222223444556666666655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-09 Score=110.62 Aligned_cols=255 Identities=12% Similarity=0.088 Sum_probs=190.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.-.+-+-..+++.+.++++....+.. ++....+..-|..+...|+-.+-..+-..+++. .+....+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33444555666666666666665432 333333334444555566555555555555554 3667788888888888889
Q ss_pred CHHHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEMEDRN---VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -| ...-+.-+..-|.+.+..+-|.++|.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999998776433 368999999999999999999999888773 33 23344446667888999999999998
Q ss_pred HHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 615 SMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--------LSA-DVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 615 ~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
+.. ++.| |+..++-+.-+....+.+.+|..+|+... ..+ -..+|+.|+.+||+.+.+++|+..++++
T Consensus 405 ~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 876 6666 44556666667777889999999988753 111 2356888999999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 685 LEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 685 ~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.+.|.++.+|..++-+|...|+.+.|.+.+.+...
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=118.73 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAE--MILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
....++.+.|...|++++|...++ .+++.+|++.. +..|+.++.+.|+.++|.+++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666777777777777777 45556664433 457777777777777777766654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-10 Score=121.40 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=208.8
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcc-hhhHHHHHHHHcCCHHHHHHHHHhcCC--CCe--ehHHHHHHHHHhcCChhHH
Q 002975 399 GNLLDSNVAEQVYTHAVKRGRALDDC-VGNSLISMYARSGRMEDARKAFESLFE--KNL--VSYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A 473 (861)
...|+++.|++.+....+.. |+.. .+-....++.+.|+.+.|.+.+.+..+ |+. ...-+....+.+.|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45799999999998877653 3332 333445777888999999999998733 333 2333457788889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH---H----ccCCHHHHHHH
Q 002975 474 FELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY---S----RCANVEAAFQV 546 (861)
Q Consensus 474 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~ 546 (861)
.+.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999875 3355678888999999999999999999999987543332211111222 2 22233455555
Q ss_pred HHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH--H-HHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 547 FKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT--Y-IAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 547 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
++..++ .+...+..+...+...|+.++|.+.+++..+. .||... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 555553 47788899999999999999999999999994 565442 1 112222344578888999988887555
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRS--M-PLSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
.-.|+.....++..++.+.|++++|.+.|+. . ...|+...+..|...+.+.|+.+.|.+++++.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444435667888999999999999999994 3 4689998888999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=128.60 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=86.4
Q ss_pred HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH-HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCC
Q 002975 360 TGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVL-KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGR 438 (861)
Q Consensus 360 ~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 438 (861)
..+.+.|+ +++|++++.+-.....+|+...|-.++ ..+...++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus 16 ~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 16 RLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34445555 667777665443332234444443333 3444566677777777776665422 44455556555 56777
Q ss_pred HHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcC-CCCCHHHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 439 MEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG-VGTSAYTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 439 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
+++|.++++..- .++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|...++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777766552 2345556667777777777777777777765432 3345556666666677777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGI 591 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 591 (861)
++.. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..+. .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 7664 4456666777777777777777666665544 345666677777777777777777777777663 34 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
....+..++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66667777777777777777665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-10 Score=113.88 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=165.4
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456778888999999999999999998763 345678888899999999999999999999853 234567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...|++++|.+.|+..............+..+...+.+.|++++|.+.+++.. ..| +...|..+...+...|+.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988432223345567778889999999999999998863 333 46688889999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999998889999999999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-07 Score=94.43 Aligned_cols=507 Identities=16% Similarity=0.218 Sum_probs=271.2
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHhc----CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 002975 112 NSVILNSLISLYSKCGDLNEANKIFKSM----GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVI 187 (861)
Q Consensus 112 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 187 (861)
-+..|-..+..+.+.|++...+..|+.. |.......|...|.-....|-++-++++|++.++. .|. .-.--|
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHH
Confidence 4567888888889999999999999865 54455667999999888999999999999998763 333 356677
Q ss_pred HHhcCCcchhhhhhhhhhhhhccC-----CCCchhHHHHHHHHhhhCCCCH---HHHHHHHhcCCCC--C--cchHHHHH
Q 002975 188 RACSNTENVAIGHIIYGFLLKCGY-----FDSDVCVGCALIDMFVKGSVDL---ESAYKVFDKMTEK--N--TVGWTLMI 255 (861)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~~l~~~~~~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li 255 (861)
.-++..+++++|.+.+..++.... .+.+...|..+-+..++ .-+. -....+++.+..+ | ...|++|.
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~-~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQ-NPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHh-CcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 788889999999988887764321 24556666666666655 2221 1223334444332 2 45699999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCC
Q 002975 256 TRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDG 335 (861)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g 335 (861)
.-|.+.|.++.|-++|++-.+. .....-|+.+.++|+.-.....+..+- ...+.+.... +.-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e---------------d~~ 317 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE---------------DDV 317 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh---------------hhh
Confidence 9999999999999999887654 223445666666665432211111111 0000111000 001
Q ss_pred CHHHHHHHHhccCCC---------------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc
Q 002975 336 SVDDSRKVFDRMLDH---------------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN 400 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 400 (861)
.++-...-|+.+..+ ++..|..-+..+ .|+ ..+-...|.+..+. +.|-...
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~-~~~~i~tyteAv~~-vdP~ka~---------- 383 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGN-AAEQINTYTEAVKT-VDPKKAV---------- 383 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCC-hHHHHHHHHHHHHc-cCcccCC----------
Confidence 133333333333221 333343333322 232 34444444444332 2221100
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee-------hHHHHHHHHHhcCChhHH
Q 002975 401 LLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV-------SYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 401 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A 473 (861)
-.-...+..+.+.|-..|+++.|+.+|++..+-+-. +|..-...=.+..+++.|
T Consensus 384 -------------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 384 -------------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred -------------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 001123344555555555555555555555333222 222222222344455555
Q ss_pred HHHHHHHhhcCCC----------C-------CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 474 FELLHEIEDTGVG----------T-------SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 474 ~~l~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
+++.++.....-. | +...|...++.-...|-++..+.+++.++...+-....+ -...-.+-.
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEe 523 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEE 523 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Confidence 5555544321100 0 122344444555556677777777777776554322211 112222334
Q ss_pred cCCHHHHHHHHHhccC----CCc-hHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCCH
Q 002975 537 CANVEAAFQVFKEMED----RNV-ISWTSMITGFAK---HGFAARALEIFYKMLADGIKPNGITYIAVL--SACSHAGLI 606 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~ 606 (861)
..-++++.++|++-.. |++ ..||.-+.-+.+ ....+.|..+|++.++ |.+|...-+.-|+ .-=..-|..
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHH
Confidence 4556777777776552 443 366666555442 1346778888888877 6666543222222 222344666
Q ss_pred HHHHHHHHHHHh--------------------hcCCCCChhHHHH----------------HHHHhhhcCCHHHHHHHHH
Q 002975 607 SEGWKHFRSMYD--------------------EHGIVQRMEHYAC----------------MVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 607 ~~a~~~~~~m~~--------------------~~~~~p~~~~~~~----------------l~~~~~r~g~~~eA~~~~~ 650 (861)
..|+.++++... -+|+.-+...|.- ..++=.+-|.++.|..++.
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 666666666432 2333333333322 1223345667777776665
Q ss_pred hCC--CCC--CHHHHHHHHHHHHHhCCHHH
Q 002975 651 SMP--LSA--DVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 651 ~~~--~~p--~~~~~~~ll~~~~~~g~~~~ 676 (861)
-.. ..| ++..|.+.=.--.+|||-+-
T Consensus 683 ~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 683 HGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred hhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 432 233 45667776666677777443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-07 Score=94.53 Aligned_cols=477 Identities=12% Similarity=0.108 Sum_probs=304.7
Q ss_pred CCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 002975 230 SVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLH 306 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 306 (861)
.+++..|+.+|++... ++...|--.+..=.++.....|..+++.....=...|..= --.+..=-..|++..|++++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHH
Confidence 3445555555555443 3444455555555555555555555555443211112111 11111222346667777777
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhcc--CCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 002975 307 SWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRM--LDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQV 384 (861)
Q Consensus 307 ~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~ 384 (861)
..-.+ ..|+...+++.|++=.+... ++.|+.++++. ..|++.+|--...-=-++|. ...|..+|....+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~v~~wikyarFE~k~g~-~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKE---IERARSIYERFVLVHPKVSNWIKYARFEEKHGN-VALARSVYERAIEF-- 236 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecccHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHH--
Confidence 66543 46777777777777777666 77777777775 45677777766666666676 77777777666542
Q ss_pred CCChhhHHHHHHHh----cccCChHHHHHHHHHHHHcCCCCC--cchhhHHHHHHHHcCCHHHHHHH--------HHhcC
Q 002975 385 APNHFTFASVLKAC----GNLLDSNVAEQVYTHAVKRGRALD--DCVGNSLISMYARSGRMEDARKA--------FESLF 450 (861)
Q Consensus 385 ~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~ 450 (861)
-.|...-..++.++ .+...++.|.-+++..++.- +.+ ...|..+...=-+-|+.....+. ++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 11222222333333 34566778888888877653 222 33444444444445554433332 22333
Q ss_pred CC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-------HHHHHHHHh---hcccchHHHHHHHHHHHH
Q 002975 451 EK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-------TFASLLSGA---SSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 451 ~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~ 517 (861)
.. |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.++++..++
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33 3456766777777789999999999998865 455321 222221222 346788999999998888
Q ss_pred hCCCCchhHHHHHHHHHH----ccCCHHHHHHHHHhcc--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-Ch
Q 002975 518 SGFESNHCIYNALISMYS----RCANVEAAFQVFKEME--DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NG 590 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 590 (861)
. ++....++.-+--+|+ ++.++..|.+++.... .|-..++...|..-.+.+.++....+|++.++ ..| |-
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c 471 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENC 471 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhh
Confidence 3 4556677776666665 6789999999998776 46777888888888899999999999999999 456 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACR 669 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~ 669 (861)
.+|......-...|+.+.|..+|+..+..-.+.-....+.+.||.=...|.++.|..++++.. ..+...+|-++..--.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhc
Confidence 788888877788999999999999988554444455678888888889999999999999874 4555668888775433
Q ss_pred -----HhC-----------CHHHHHHHHHHHhcc----CCCCC--chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 670 -----VHG-----------DTELGKHAAEMILEQ----DPQDP--AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 670 -----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+ +...|..+|+.+... .|... ......-+.-...|.-.+...|-++|.+
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 566778888877653 33221 2222344455666777777777777743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=117.92 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHccCCHHHHHHHHHhccC-------CC
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-----GF-ESNHC-IYNALISMYSRCANVEAAFQVFKEMED-------RN 554 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~ 554 (861)
..|...+...|...|+++.|.++++..++. |. .|.+. ..+.+..+|...+++++|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999988877654 21 22332 234577899999999999999998762 22
Q ss_pred ----chHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--
Q 002975 555 ----VISWTSMITGFAKHGFAARALEIFYKMLAD-----GIKPN-G-ITYIAVLSACSHAGLISEGWKHFRSMYDEHG-- 621 (861)
Q Consensus 555 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 621 (861)
..+++.|...|.+.|++++|..++++..+. |..+. . .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 357888888999999999998888877652 22222 2 2567788889999999999999998775544
Q ss_pred CCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-
Q 002975 622 IVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP-------L--SAD-VLVWRTFLGACRVHGDTELGKHAAEMILE- 686 (861)
Q Consensus 622 ~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 686 (861)
..++ ..+|+.|..+|...|+++||+++++++. . .+. ...++.|..+|...++.+.|.+.|+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3579999999999999999999999872 1 222 45677888999999999999999888765
Q ss_pred ---cCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 687 ---QDPQD---PAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 687 ---~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..|++ ..+|..|+-+|...|++++|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4567799999999999999999887664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-06 Score=96.20 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
...|..+..+-.+.|...+|++-|-+. -|+..|.-++.++++.|.+++-.+++...+ +..-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHH
Confidence 467999999999999999999887332 246789999999999999999999987666 556667665 56899
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 635 LLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+|++.+++.|-++++. -|+..-....++-|...|.++.|+-.+. +.+.|..|+..+...|.+..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888873 5677777888999999999999988775 446688888888888888887766
Q ss_pred HHHHHh
Q 002975 715 RKRMKE 720 (861)
Q Consensus 715 ~~~m~~ 720 (861)
-++...
T Consensus 1243 aRKAns 1248 (1666)
T KOG0985|consen 1243 ARKANS 1248 (1666)
T ss_pred hhhccc
Confidence 554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-08 Score=102.98 Aligned_cols=209 Identities=16% Similarity=0.137 Sum_probs=111.4
Q ss_pred cCCChHHHHHHHHhcCCCCCce-eHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 125 KCGDLNEANKIFKSMGNKRDIV-SWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 125 ~~g~~~~A~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
..|+++.|...++.....|+.. .|-.+.......|+..-|.++|..+ |++.+++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai----------------------~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI----------------------GDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH----------------------HHHHHHHHHH
Confidence 4688999999998876656665 4777777777777777776666543 3444555544
Q ss_pred hhh-------hhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 002975 204 GFL-------LKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMIL 276 (861)
Q Consensus 204 ~~~-------~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 276 (861)
+.. ++.|.-..+-+-..+++.+..+ .+.+|..+|-+-. .-..-|..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k---kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK---KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh---hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 433 2333233444555666666655 7888888885421 1123466667777777777765432
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhc--cCCCCccc
Q 002975 277 SGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDR--MLDHNVMS 354 (861)
Q Consensus 277 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~--~~~~~~~~ 354 (861)
|.+.-...-.+.++++...|+-+.|-++- .+.--.-+-|..|.+.|. +..|.+.... ....|...
T Consensus 584 -~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~---p~~a~~~a~n~~~l~~de~i 650 (1636)
T KOG3616|consen 584 -GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGK---PAKAARAALNDEELLADEEI 650 (1636)
T ss_pred -CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCC---chHHHHhhcCHHHhhccHHH
Confidence 22111111223344444444444433321 111122345666777665 5555544321 11223333
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHH
Q 002975 355 WTAIITGYVQSGGRDKEAVKLFSDM 379 (861)
Q Consensus 355 ~~~li~~~~~~g~~~~~A~~l~~~m 379 (861)
...+..++.+... +++|-++|+++
T Consensus 651 l~~ia~alik~el-ydkagdlfeki 674 (1636)
T KOG3616|consen 651 LEHIAAALIKGEL-YDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHHHhhHH-HHhhhhHHHHh
Confidence 3444444444444 55555566554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-06 Score=89.54 Aligned_cols=421 Identities=11% Similarity=0.134 Sum_probs=216.2
Q ss_pred CCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 126 CGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 126 ~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
.+++..|+.+|+.. ....+...|-..+..=.++.+...|..++++....=.+.|..=| .-+-.=-..|++..|++++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 34445555555544 11234444555555555555555555555554432111111111 1111112234555555555
Q ss_pred hhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002975 204 GFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT--EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLP 281 (861)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (861)
..=.+ ..|+...|++.|++=.+ -..++.|+.++++.. .|++.+|---..-=-++|....|..+|+...+. --
T Consensus 165 erW~~---w~P~eqaW~sfI~fElR-ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 165 ERWME---WEPDEQAWLSFIKFELR-YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHH-hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 55444 56777788888887777 777788888877654 477777777666667777777777777765542 11
Q ss_pred CcccHHHHHHHHh----ccCCchHHHHHHHHHHHhCCCC-ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHH
Q 002975 282 DRFTLSGVVSACS----ELELFTSGKQLHSWAIRTGLAL-DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT 356 (861)
Q Consensus 282 d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~ 356 (861)
|...-..++.+++ +....+.++-++..++.+-... ...++..+...=-+.|+...++++.--=.++
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~--------- 309 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF--------- 309 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh---------
Confidence 2222223333333 3345556666666666543221 1233444444434444422233322111111
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcc-hhhHHHHH---
Q 002975 357 AIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDC-VGNSLISM--- 432 (861)
Q Consensus 357 ~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~--- 432 (861)
-+++++.. -+-|-.++-..++.-...|+.+...++++.++..-.+.... .+...|-.
T Consensus 310 ------------------qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 310 ------------------QYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred ------------------HHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 11111111 11233333333444444455555555555554432111110 11111111
Q ss_pred -----HHHcCCHHHHHHHHHhcCC---CCeehHHHH----HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 002975 433 -----YARSGRMEDARKAFESLFE---KNLVSYNTM----VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGAS 500 (861)
Q Consensus 433 -----~~~~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 500 (861)
=....+++.+.++|+...+ ..-.|+.-+ ..--.++.+...|.+++-... |.-|-..+|...|..-.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHH
Confidence 1123455555555544322 122232222 222345566667777666655 56677777777777777
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-CCC----chHHHHHHHHHHhcCChHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-DRN----VISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~ 575 (861)
+++.++.+..+++..+..+ +.+..+|.-....=...|+.+.|..+|+-.. +|- ...|.+.|.--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 7777777777777777765 5566667666666667777777777777655 332 245666666666677777777
Q ss_pred HHHHHHHHc
Q 002975 576 EIFYKMLAD 584 (861)
Q Consensus 576 ~~~~~m~~~ 584 (861)
.+|+++++.
T Consensus 528 ~LYerlL~r 536 (677)
T KOG1915|consen 528 ALYERLLDR 536 (677)
T ss_pred HHHHHHHHh
Confidence 777777764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-08 Score=101.43 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=162.7
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDA 442 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 442 (861)
...++ +.+.+++++...+. .++....+..=|..+...|+...-..+=..+++. .|....+|-++.-.|.-.|+.++|
T Consensus 255 y~~c~-f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 255 YYGCR-FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHcCh-HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 33344 77777777776654 2334444444455555666655555554555544 366677888888888888999999
Q ss_pred HHHHHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC
Q 002975 443 RKAFESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG 519 (861)
Q Consensus 443 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 519 (861)
++.|.+...-|. ..|-.+...|+-.|..+.|+..+...-+. ++-...-+.-+.--|.+.++.+.|.+++.++....
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999988755443 57999999999999999999888776542 11111122233445667778888888888776654
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhccC------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEMED------R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKP- 588 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 588 (861)
+.|+.+.+-+.-++-..+.+.+|...|+.... + -..+|+.|..+|.+.+.+++|+..|++.+. ..|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k 487 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPK 487 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCC
Confidence 66777777777777777777777777776541 0 112355566666666666666666666665 333
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 589 NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 589 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|..|+.++.-.+...|+++.|...|.+.. .+.|+-..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~ 524 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIF 524 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHH
Confidence 34556666666666666666666666544 45555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=88.28 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=48.5
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 143 RDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-08 Score=99.68 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=164.3
Q ss_pred cCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHH
Q 002975 436 SGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
.|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555544322 112233333344455666666666666554432334444444445555566666666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-----------chHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-----------VISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
..+.+.+ +-++.+.......|.+.|++.+...+...+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665554 4455566666666666666666666666665422 135666665555555444444455554
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH----HHHHHHhCCCCCC
Q 002975 582 LADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE----ALEFIRSMPLSAD 657 (861)
Q Consensus 582 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e----A~~~~~~~~~~p~ 657 (861)
-.. .+-++..-.+++.-+...|+.++|.++..... +.+.+|+... ++ ...+-|+... +.+.++..+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 332 34445555566666777788888887777766 4455555211 11 1123333332 3333344443 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+..+.+|+..|.+++.+.+|..+++.+++..| +...|..++.+|.+.|+..+|..+++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47888899999999999999999999999888 55778899999999999999998887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-08 Score=94.48 Aligned_cols=261 Identities=12% Similarity=0.123 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC---cchhhHHHHHHHHcCCHHHHHHH
Q 002975 369 DKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALD---DCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 369 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++---+. ....-.|..-|...|-+|.|+.+
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 889999999998731 12333445667778888889999999888876421111 12334456667888888888888
Q ss_pred HHhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH----HHHHHHHHhhcccchHHHHHHHHHHHHh
Q 002975 446 FESLFEKNL---VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY----TFASLLSGASSIGAIGKGEQIHARIIKS 518 (861)
Q Consensus 446 ~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 518 (861)
|..+.+.+. .....|+..|-+..++++|+++-+++.+.+-++..+ .|.-+...+....+++.|...+.+..+.
T Consensus 130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 888866433 345667888888888888888888877766554433 2333444444455666666666666655
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCch----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVI----SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYI 594 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 594 (861)
+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+....++ .-.
T Consensus 210 ~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l 286 (389)
T COG2956 210 D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AEL 286 (389)
T ss_pred C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHH
Confidence 4 334445555666666666776666666666654432 344556666666666666666666666332222 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.+...-....-.+.|..+..+-. .-.|+...+..+++.-
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql---~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQL---RRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHH---hhCCcHHHHHHHHHhh
Confidence 22222222333444444443333 2346666666665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-08 Score=99.38 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|+.-.+.+-++..++.... +...|--+..+|....+-++..+.|+.... .|..+|-.-...+.-.+++++|..-|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443211 111233444445555555555555554422 233344444444444455555555555
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC--
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-- 554 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-- 554 (861)
+.+... +-+...|.-+.-+..+.+.++++...|+..++. ++..+.+|+-....+...++++.|.+.|+...+ |+
T Consensus 419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 554321 112334444444445556666666666666554 455666677777777777777777777765542 21
Q ss_pred -----chHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 -----VISW--TSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 -----~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...+ -+++ .+.-.+++.+|++++++..+ +.|. ...|.+|...-.+.|++++|+++|+...
T Consensus 497 ~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111 11133677777777777777 5554 4567777777777777777777777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-11 Score=85.55 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 553 RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 553 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-09 Score=117.83 Aligned_cols=242 Identities=13% Similarity=0.051 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhhcCCCCCH-HHHHHHHHHhh---------cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 470 SEKAFELLHEIEDTGVGTSA-YTFASLLSGAS---------SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
.++|+++|++..+. .|+. ..+..+..++. ..++.++|...++++++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777643 3433 33433333322 2345788899999888876 5577888889899999999
Q ss_pred HHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 540 VEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 540 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
+++|...|++..+ | +...|..+...+...|++++|+..+++.++ ..|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998774 4 356788889999999999999999999999 567643 334445556778999999999988
Q ss_pred HHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 616 MYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADV-LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 616 m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+.. .| +...+..+..+|...|++++|.+.++++. ..|+. ..++.+...+...| +.+...++++++..-..+
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76332 24 34456778888999999999999998863 44543 44555555666666 477887888777544444
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4444588899999999988877 656553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-08 Score=96.98 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHH
Q 002975 366 GGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKA 445 (861)
Q Consensus 366 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (861)
|+ +..|.++..+-.+.+-.| ...|..-..+..+.|+.+.+-..+.++.+..-.++..++-+........|+.+.|..-
T Consensus 98 G~-~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GD-FQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred Cc-HHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 55 666666666655544332 2344555556667777777777777776664455666666677777778888877777
Q ss_pred HHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH-------HHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 446 FESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA-------YTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 446 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
.++. ...+.........+|.+.|++.+...++..|.+.|.--|. .++..++.-+...+..+.-.+.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6655 3345667777888888888888888888888888765554 35666666655555555544455544
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR--NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
-+. ...++.+-.+++.-+.++|+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+. .+-++..+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence 332 2345555666666777777777777776665532 222 11122334555555555555554442 11223556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+|...|.+.+.+.+|..+|+... ...|+..+|+-+.+.|.+.|+..+|.+..++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 666666777777777777776554 45566666666666666666666666666553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.9e-06 Score=87.06 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=109.3
Q ss_pred HHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHH
Q 002975 85 LKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDA 164 (861)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 164 (861)
+.+....+.+..|..+++.+..+.. ....|..+.+.|+..|+++.|.++|-+... ++--|..|.++|+|++|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~------~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL------FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch------hHHHHHHHhccccHHHH
Confidence 3344445556666666555444332 233455566666666667766666655544 55566666666666666
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 165 IHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 165 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
.++-.+... |. .....|-+-..-.-+ .|++.+|.+++-.+.
T Consensus 811 ~kla~e~~~----~e----------------------------------~t~~~yiakaedlde-hgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 811 FKLAEECHG----PE----------------------------------ATISLYIAKAEDLDE-HGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhcC----ch----------------------------------hHHHHHHHhHHhHHh-hcchhhhhheeEEcc
Confidence 666554321 11 111222222222223 667777777776666
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHH
Q 002975 245 EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSL 324 (861)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 324 (861)
+|+. -|..|-+.|..++.+++.++-.-... ..|-..+-.-+...|++..|+.-+-... -+.+-
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaa 914 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAA 914 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHH
Confidence 6653 35667777777777777665321111 1233444445556677776665443322 34567
Q ss_pred HHHHHhCCCCCCHHHHHHHHhcc
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRM 347 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~ 347 (861)
++||...+. +++|.++-..-
T Consensus 915 vnmyk~s~l---w~dayriakte 934 (1636)
T KOG3616|consen 915 VNMYKASEL---WEDAYRIAKTE 934 (1636)
T ss_pred HHHhhhhhh---HHHHHHHHhcc
Confidence 778887766 88888776554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=104.25 Aligned_cols=227 Identities=18% Similarity=0.124 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 002975 458 NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC 537 (861)
Q Consensus 458 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 537 (861)
+.|..+|.+.|.+.+|.+.|+.-.++ .|-..||..|-.+|.+..+.+.|+.++..-.+. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777778888887777776654 455566777777777777777777777766654 355555556667777778
Q ss_pred CCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 538 ANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 538 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+.+|+++++.|+ -+...|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887764 3455556667788888889999999999988884 356778888888888888888887777
Q ss_pred HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 615 SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 615 ~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.... | ..| -..+|..|.......||...|.+.++.++.-+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 66521 1 122 246898998888999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 693 AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+++.|+-+-.+.|+.++|..++...+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-08 Score=92.91 Aligned_cols=306 Identities=13% Similarity=0.149 Sum_probs=198.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-CCee------hHHHHHHHHHhcCChhHH
Q 002975 401 LLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE-KNLV------SYNTMVDAYAKNLNSEKA 473 (861)
Q Consensus 401 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A 473 (861)
..+.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. ..-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357888999999998743 44555667889999999999999999988754 4432 334456678889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 474 FELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN----HCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 474 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
..+|..+.+.+ .--......|+..|-...++++|.++-..+.+.+-++. ...|.-|...+.-..+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988754 23345667788888888899999988888877653332 22344566666667788888888887
Q ss_pred ccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh
Q 002975 550 MEDRNV---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM 626 (861)
Q Consensus 550 ~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 626 (861)
..+.|. ..--.+...+...|+++.|++.++...+++..--+.+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 764332 2333345667788888888888888888542222456677778888888888888888777632 2333
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 627 EHYACMVDLLGRSGSLTEALEFI-RSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
..-..+.+.-....-.++|...+ +....+|+......|+..-.. =++.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~-------------------------------daee 331 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA-------------------------------DAEE 331 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc-------------------------------cccc
Confidence 33333333333333333443333 333445554444333332111 1234
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEE
Q 002975 706 GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFH 742 (861)
Q Consensus 706 g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~ 742 (861)
|+|.+..-+.+.|....++..|.+.-..-+=+.|.|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 6677888888888877777777554433333344443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-09 Score=106.97 Aligned_cols=211 Identities=15% Similarity=0.037 Sum_probs=149.2
Q ss_pred cchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHH
Q 002975 503 GAIGKGEQIHARIIKSG-FES--NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666666432 222 245677888889999999999999998763 356789999999999999999999
Q ss_pred HHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--
Q 002975 577 IFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-- 653 (861)
Q Consensus 577 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-- 653 (861)
.|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 6776 56788888889999999999999998873 34543322222234456788999999996642
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMIL-------EQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333 3331 2222334544333 2333333 5567777899999999999999999999999887644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-06 Score=91.63 Aligned_cols=431 Identities=13% Similarity=0.112 Sum_probs=236.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHH--HHHHHHhCCC
Q 002975 256 TRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCS--LVDMYAKCTV 333 (861)
Q Consensus 256 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~--li~~y~~~g~ 333 (861)
.-+.++|++++|+....++...+ +-|...+..-+-+..+.+.++.|..+.. ..+.. .+++. +=.+||....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh---hhcchhhHHHHHHHHHc
Confidence 33445556666666666655543 2223334444444555555555542221 11110 11111 3455554432
Q ss_pred CCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhcccCChHHHHHHHH
Q 002975 334 DGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLKACGNLLDSNVAEQVYT 412 (861)
Q Consensus 334 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~ 412 (861)
++.|+|...++.....+......-...+.+.|+ +++|+++|+.+.+.+..- |...-..++.+-... .. .
T Consensus 93 -nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~ 162 (652)
T KOG2376|consen 93 -NKLDEALKTLKGLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-Q 162 (652)
T ss_pred -ccHHHHHHHHhcccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-H
Confidence 448888888775544454455555566777787 888888888886655432 222222222221111 00 0
Q ss_pred HHHHcCCCCCcchhhH---HHHHHHHcCCHHHHHHHHHhc--------CCCCe----------ehHHHHHHHHHhcCChh
Q 002975 413 HAVKRGRALDDCVGNS---LISMYARSGRMEDARKAFESL--------FEKNL----------VSYNTMVDAYAKNLNSE 471 (861)
Q Consensus 413 ~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~ 471 (861)
.+......| ..+|.. ....+...|++.+|+++++.. .+.|. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111122 222222 344556678888888888766 11111 11233455677889999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHH---HhhcccchHH--------------HHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 472 KAFELLHEIEDTGVGTSAYTFASLLS---GASSIGAIGK--------------GEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
+|.+++...+... .+|........+ +.....++-. +......+.+.. .....--+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999988765 445433222221 2221111111 111111111110 11222234555665
Q ss_pred HccCCHHHHHHHHHhccCCC-chHHHHHH-HHHH-hcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHH
Q 002975 535 SRCANVEAAFQVFKEMEDRN-VISWTSMI-TGFA-KHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 609 (861)
. +..+.+.++.......- ...+.+++ .++. +...+.+|.+++...-+. .|+. +.....+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 55667777777666422 23334444 3332 333578888888887763 4543 3445566667889999999
Q ss_pred HHHHH--------HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhC
Q 002975 610 WKHFR--------SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM--------PLSAD-VLVWRTFLGACRVHG 672 (861)
Q Consensus 610 ~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g 672 (861)
.+++. .+. +.+..| .+-..++.++.+.++.+-|.+++.+. +.++. ..+|.-+...=.++|
T Consensus 396 ~~il~~~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 444 334444 44567888898888765555555443 22222 234444555556779
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+.++|...++++++.+|+|....+.|...|+... .+.|..+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999999999888764 3444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-05 Score=84.47 Aligned_cols=532 Identities=12% Similarity=0.106 Sum_probs=308.5
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHHHHcCC-CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 002975 79 DTYSLLLKSCIRSRNFHLGKLVHSLLTRSKL-EPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVN 157 (861)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 157 (861)
..+...+..+..++++..-+..|+..++.-+ .-...+|...+......|-.+-+.++++..-. -+...-+-.|.-++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Confidence 3455555666677777777788887776543 33456778888888888888889999887633 334447778888899
Q ss_pred cCChhHHHHHHHHHHHcC------CCCCcccHHHHHHHhcCCcchhhh---hhhhhhhhhccCCCCchhHHHHHHHHhhh
Q 002975 158 RGKQVDAIHMFVEMLELG------FCPNEYCFSAVIRACSNTENVAIG---HIIYGFLLKCGYFDSDVCVGCALIDMFVK 228 (861)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 228 (861)
.+++++|-+.+....... -+.+...|..+-...++..+.-.. ..+.+..+..- .+.-.+.|++|.+.|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf-tDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF-TDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC-cHHHHHHHHHHHHHHHH
Confidence 999999988888875322 233445566665655555443332 23333333322 23345789999999999
Q ss_pred CCCCHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCC----------------------chHHHHHHHHHHHCCC-C---
Q 002975 229 GSVDLESAYKVFDKMTEK--NTVGWTLMITRCTQLGC----------------------PRDAIRLFLDMILSGF-L--- 280 (861)
Q Consensus 229 ~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~g~-~--- 280 (861)
.|.++.|..+|++.... .+.-|+.+-+.|++-.. ++-.+.-|+.+...+. -
T Consensus 261 -~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 261 -SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred -hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999886542 33344444454443211 1122222333322210 0
Q ss_pred ------C-CcccHHHHHHHHhccCCchHHHHHHHHHHHhC-----CCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 002975 281 ------P-DRFTLSGVVSACSELELFTSGKQLHSWAIRTG-----LALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRML 348 (861)
Q Consensus 281 ------p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~ 348 (861)
| +..++..-+ -...|+..+-...+..+++.- ...-...+..+.+.|-..|+ ++.|+.+|++..
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~---l~~aRvifeka~ 414 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD---LDDARVIFEKAT 414 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc---HHHHHHHHHHhh
Confidence 0 000111111 111233444445555555431 11122356677778888777 888888888776
Q ss_pred CCCcc-------cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 002975 349 DHNVM-------SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRAL 421 (861)
Q Consensus 349 ~~~~~-------~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 421 (861)
.-+-. .|-.-...=.+..+ ++.|+.+++.... .|.... + .+...+..-++ .+| .
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~-rlh---------r 475 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA-RLH---------R 475 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH-HHH---------H
Confidence 54333 23333333334444 6666666555432 233211 1 11122221111 111 1
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHH---HHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHH
Q 002975 422 DDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVD---AYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLS 497 (861)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 497 (861)
+..+|...++.--..|-++....+++++.+--+.|=...++ -+-.+..++++.+++++-...=.-|+.. .|+..+.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 23456666777777888888888888886544433222222 2334566788888887755443345543 3444333
Q ss_pred Hh---hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----ccCCHHHHHHHHHhccCC-----CchHHHHHHHHH
Q 002975 498 GA---SSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS----RCANVEAAFQVFKEMEDR-----NVISWTSMITGF 565 (861)
Q Consensus 498 a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 565 (861)
-+ ...-.++.|+.+|++.++ |.+|.. ...+.-.|+ +-|-...|++++++.... -...||..|.--
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33 234478999999999998 666542 222333344 457888899999987632 235788888655
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITY---IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
+..=-......+|++.++ .-||...- .-....=++.|.++.|..++..-.+-..-.-+.+.|.+.=+.=.|-|+-
T Consensus 633 ae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 544335666788888888 46775432 2233445788999999999977653333333556677666666777773
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-07 Score=89.84 Aligned_cols=304 Identities=11% Similarity=0.027 Sum_probs=206.5
Q ss_pred CCCChhhHHHHHHHhcc--cCChHHHHHHHHHHHH-cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHH
Q 002975 384 VAPNHFTFASVLKACGN--LLDSNVAEQVYTHAVK-RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTM 460 (861)
Q Consensus 384 ~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 460 (861)
+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.++....++.+.|...|+.++|...|++...-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44555555555555543 3444455555554433 44677888889999999999999999999998765555443333
Q ss_pred ---HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 002975 461 ---VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC 537 (861)
Q Consensus 461 ---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 537 (861)
.-.+.+.|+++....+...+.... +-....|..-+.......+.+.|..+-++.++.+ +.+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 334567788888888777776432 1122222222333345667778888877777654 33444444445667778
Q ss_pred CCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH-HHHH-hcCCHHHHHHH
Q 002975 538 ANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVL-SACS-HAGLISEGWKH 612 (861)
Q Consensus 538 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 612 (861)
|+.++|.-.|+... . -+..+|..|+..|.-.|++.+|..+-++..+. +.-+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 89999988888655 3 36789999999999999999998887776662 223344544332 2232 22345778888
Q ss_pred HHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 613 FRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSM-PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 613 ~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
+++-. .+.|+ ...-..+..++.+.|+.++++.++++. ...||....+.|....+..+.+.+|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 87655 55664 244556677888999999999999886 36788888889999999999999999999999999998
Q ss_pred CCc
Q 002975 691 DPA 693 (861)
Q Consensus 691 ~~~ 693 (861)
|-.
T Consensus 504 ~~~ 506 (564)
T KOG1174|consen 504 SKR 506 (564)
T ss_pred chH
Confidence 733
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-07 Score=96.64 Aligned_cols=397 Identities=16% Similarity=0.142 Sum_probs=256.5
Q ss_pred hCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh
Q 002975 312 TGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNH 388 (861)
Q Consensus 312 ~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~ 388 (861)
..+..|..+|..|.-+...+|+ ++.+.+.|++...- ....|+.+-..|...|. ...|+.++++-......|+.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~---f~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQ---FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCc
Confidence 3466889999999999999999 99999999987543 45679999999999998 88999999887654433544
Q ss_pred hh-HHHHHHHhc-ccCChHHHHHHHHHHHHc--CC--CCCcchhhHHHHHHHHcC-----------CHHHHHHHHHhcCC
Q 002975 389 FT-FASVLKACG-NLLDSNVAEQVYTHAVKR--GR--ALDDCVGNSLISMYARSG-----------RMEDARKAFESLFE 451 (861)
Q Consensus 389 ~t-~~~ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~ 451 (861)
.+ +...-..|. +.+..+++...-..+++. +. ......|-.+.-+|...- ...++.+.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 43 434444453 557777777776666652 21 122334444444444321 23455666666643
Q ss_pred CCeehHHH---HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHH
Q 002975 452 KNLVSYNT---MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIY 527 (861)
Q Consensus 452 ~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 527 (861)
.|..-++. +.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|+.+.+..... |. |....
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 32222222 22345667788999999999888776778888888888888888899998888776542 21 11111
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-------------------------------CCc-hHHHHHHHHHHhcCChHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-------------------------------RNV-ISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~ 575 (861)
..-++.-..-++.++|......+.. .|. .++.-+.. ... -+...+.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~ 628 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAG 628 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcc
Confidence 1111112223444444433322210 111 11211111 111 0001000
Q ss_pred HHHHHHHHcCCCC--C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHH
Q 002975 576 EIFYKMLADGIKP--N------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 576 ~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.-. .|...-+.| + ...|......+...+..++|...+.+.. ++.| ....|.-....+...|..+||.
T Consensus 629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 011111223 2 1234556667888899999987777665 4445 3455666678889999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 647 EFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKH--AAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 647 ~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|... ...|+ +.+..++...+-..|+...|+. +...+++++|.++.+|+.|+.++.+.|+.++|.+-+...-+
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998876 36664 6688899999999999999988 99999999999999999999999999999999999886654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-08 Score=98.06 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=96.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~---------- 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----------
Confidence 345556666666666666666666665432 1223344444444444455555544444444432 2223
Q ss_pred HccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
..+..+...+...|++++|+..|++..+....|. ...+..+..++...|++++|...+
T Consensus 100 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 100 ---------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ---------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444445555555555555555544221121 223444444555555555555555
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 614 RSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
+...+.. +.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.+.|....+.+.+.
T Consensus 159 ~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5544211 1123344445555555555555555555431 1223444445555556666666666665555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=113.09 Aligned_cols=210 Identities=12% Similarity=0.024 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------ccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYS---------RCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 570 (861)
+++++|.+.+++.++.. +.+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999988764 334556666665554 23458999999998874 356788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++|+..|++.++ ..|+ ...+..+..++...|++++|...+++.. .+.|+.. .+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5676 5578888899999999999999999988 3445432 223344456778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 649 IRSMP--LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 649 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++.. ..|+ +..+..+..++...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98863 2353 4556777778889999999999999999999998888889999999888 477776666544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-05 Score=86.74 Aligned_cols=351 Identities=12% Similarity=0.080 Sum_probs=199.3
Q ss_pred HHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCch
Q 002975 186 VIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPR 265 (861)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 265 (861)
+..-+-+..++..-..+++..+..| ..|+.++|+|...|..+.+..+.- +.+ |..--+..+.-||...++.
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f---Lke----N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF---LKE----NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh---ccc----CCcchhhHHhhhhcccCCc
Confidence 3334445556666667777888888 778899999999998844444321 111 2222223344455444443
Q ss_pred HHHHHHHHHHHC----CCCCCcccHHHHHHHHhccCC-----------chHHHHHHHHHHHhCCC--CccchHHHHHHHH
Q 002975 266 DAIRLFLDMILS----GFLPDRFTLSGVVSACSELEL-----------FTSGKQLHSWAIRTGLA--LDVCVGCSLVDMY 328 (861)
Q Consensus 266 ~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~~~-----------~~~a~~i~~~~~~~g~~--~~~~~~~~li~~y 328 (861)
-|.-.|++=.-. .+.-....|...-+-+....+ -..-+++.++++..+++ .|+.-.+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 332222110000 000011112122121222222 12245667777777653 4555666677777
Q ss_pred HhCCCCCCHHHHHHHHhccC-CCCcc-----cHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC
Q 002975 329 AKCTVDGSVDDSRKVFDRML-DHNVM-----SWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL 402 (861)
Q Consensus 329 ~~~g~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 402 (861)
...+. ..+-.++++++. ++++. .-|.||-.-.+.. .....+..+++-.-. --.+...+...+
T Consensus 995 MtadL---p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad--~trVm~YI~rLdnyD-------a~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 995 MTADL---PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD--RTRVMEYINRLDNYD-------APDIAEIAIENQ 1062 (1666)
T ss_pred HhcCC---cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC--hHHHHHHHHHhccCC-------chhHHHHHhhhh
Confidence 77666 788888888773 33333 3344554444443 455666666653321 112334455566
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhh
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIED 482 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 482 (861)
-+++|..+|+..- .+....+.|+ -.-+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1063 LyEEAF~ifkkf~-----~n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFD-----MNVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred HHHHHHHHHHHhc-----ccHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 6777777776542 2222223333 2356777887777776554 46888888888888888888766442
Q ss_pred cCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHH
Q 002975 483 TGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMI 562 (861)
Q Consensus 483 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 562 (861)
-|+..|.-++..+.+.|.+++-..++..+.+..-.|. +-+.||-+|++.+++.+-++... .||+.-...+.
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVG 1201 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHh
Confidence 3667788888888888888888888887777654444 44578888888888877665543 34444444444
Q ss_pred HHHHhcCChHHHHHHH
Q 002975 563 TGFAKHGFAARALEIF 578 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~ 578 (861)
.-|...|.++.|.-+|
T Consensus 1202 drcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHhhhhhhHHHHHHH
Confidence 4444444444444333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-07 Score=87.45 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHHHhccC-----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 540 VEAAFQVFKEMED-----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 540 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+.-|.+.|+..-+ ..+.--.+|.+.+.-..++++.+.+++....--..-|...| .+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 4455555554432 22334556677777777888888888888775333344444 48899999999999999997
Q ss_pred HHHhhcCCC-CChhHHHHH-HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 615 SMYDEHGIV-QRMEHYACM-VDLLGRSGSLTEALEFIRSMPLSADVLVWRT-FLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 615 ~m~~~~~~~-p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
.+. |.+ .+..+|..+ ...|.++|+.+-|++++-++..+.+..+.-. +.+.|.+.+.+--|-+++..+-.++|.
T Consensus 418 ~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 418 RIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 765 333 344556554 5688999999999999998865555554444 456799999999999999999999984
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.9e-08 Score=104.09 Aligned_cols=234 Identities=15% Similarity=0.153 Sum_probs=139.6
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCC----------Cee-hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEK----------NLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++...
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i---------- 270 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI---------- 270 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------
Confidence 4444666666666666666666554221 111 1223445566666666666666665421
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----------CCc-hHHHHHH
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED----------RNV-ISWTSMI 562 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li 562 (861)
.....-...+.-..+++.|..+|.+.|++++|...++...+ +.+ .-++.++
T Consensus 271 ------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 271 ------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred ------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 00000001111233445555566666666666665554431 222 2345566
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----C-CCC-ChhHH
Q 002975 563 TGFAKHGFAARALEIFYKMLAD---GIKPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEH----G-IVQ-RMEHY 629 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~ 629 (861)
..+...+++++|..++++..+. -..++ ..++..+...+.+.|++++|.++|+++.... + ..+ .-.++
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 6677777788887777766542 12223 2367788888888888888888888776432 1 122 23456
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSM--------PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
+-|...|.+.++..+|.++|.+. +..|+ ..+|..|..+|+..|+++.|+++.++++.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67777788888888777777664 24444 35888899999999999999999888873
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-08 Score=92.02 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVD 634 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 634 (861)
+...|.-+|.+.|+...|.+-+++.++ ..|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ -++.|...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 344567788888888888888888888 5565 4578888888888888888888888877 45553 466777788
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 635 LLGRSGSLTEALEFIRSMPLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.++.+|++++|...|+++...|+ +.+|..++....+.|+.+.|+..+++.++++|+++.+...+++...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88888999999999888754443 46888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002975 711 VANIRKRMKERNL 723 (861)
Q Consensus 711 a~~~~~~m~~~~~ 723 (861)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=97.53 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=152.3
Q ss_pred CChhHHHHHHHHHhhcC-CCCC--HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 002975 468 LNSEKAFELLHEIEDTG-VGTS--AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 544 (861)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...+...++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666432 2222 2345566666777788888888888777765 556788999999999999999999
Q ss_pred HHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 545 QVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 545 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
..|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998864 3 456888888889999999999999999988 5665432222222334567899999999765422
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-Cch
Q 002975 622 IVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PL----SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-PAA 694 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~ 694 (861)
..|+...+ .++..+......+++.+.+.+. .. .| ....|..|+..+...|+.+.|+..++++++++|.+ ...
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 23333222 3444433333333444333322 11 11 34588999999999999999999999999999854 333
Q ss_pred HHHHHHHH
Q 002975 695 HILLSNLY 702 (861)
Q Consensus 695 ~~~L~~~y 702 (861)
-..+..+.
T Consensus 274 ~~~~~e~~ 281 (296)
T PRK11189 274 RYALLELA 281 (296)
T ss_pred HHHHHHHH
Confidence 33444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-06 Score=89.09 Aligned_cols=439 Identities=14% Similarity=0.091 Sum_probs=266.5
Q ss_pred CCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHH
Q 002975 212 FDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSG 288 (861)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 288 (861)
+..|..+|-.|.-.... +|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+...
T Consensus 319 ~qnd~ai~d~Lt~al~~-~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSR-CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 66788888888888888 9999999999998664 3456799999999999999999999987665443455554444
Q ss_pred HHH-HHh-ccCCchHHHHHHHHHHHhC--C--CCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 002975 289 VVS-ACS-ELELFTSGKQLHSWAIRTG--L--ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGY 362 (861)
Q Consensus 289 ll~-a~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 362 (861)
+.. .|. +.+..+++...-..++... . ......+-.+--+|...-. ....+.-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-----------------~a~~~se----- 455 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-----------------QANLKSE----- 455 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-----------------cCCChHH-----
Confidence 433 343 3456666666555555421 1 1111122222222221100 0001100
Q ss_pred HhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQ-VAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED 441 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 441 (861)
+... ..++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+...+..+.+-..+...+..|.-.+...+++.+
T Consensus 456 -R~~~-h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 456 -RDAL-HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 0011 456777888776643 345555554444 34566888999999999888778888888888888888999999
Q ss_pred HHHHHHhcCCCCeehHHH---HHHHHHhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 002975 442 ARKAFESLFEKNLVSYNT---MVDAYAKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIHARII 516 (861)
Q Consensus 442 A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 516 (861)
|+.+.+...+.-...++. -+..-..-++.++|+.....+...- ..+-. ..++-....+....+.
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q-----------~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ-----------QTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh-----------hhhhhhhhhhhhcccc
Confidence 998887764321111111 1222233566777776666654210 00000 0111111111111110
Q ss_pred --HhCCCCchhHHHHHHHHHH---ccCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 517 --KSGFESNHCIYNALISMYS---RCANVEAAFQVFKEMEDRNV------ISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 517 --~~~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
.........++..+..... +.-..+..+..+.....|+. ..|......+.+.++.++|...+.+...
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0011112223322222221 11111122222222223332 3455666778888999999888888776
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHH--HHHhCC-CCC-CHH
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALE--FIRSMP-LSA-DVL 659 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~--~~~~~~-~~p-~~~ 659 (861)
+.|- ...|......+...|.+++|.+.|.... -+.|+ +....++..++.+.|+-.-|.. ++..+. ..| +..
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 4454 4466666677788899999999998766 56664 4567788889999887666666 777763 444 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.|..|+....+.|+.+.|...|.-++++++.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-06 Score=82.15 Aligned_cols=281 Identities=10% Similarity=-0.019 Sum_probs=196.7
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT-FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNAL 530 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 530 (861)
.|+.....+...+...|+.++|...|++.+. +.|+..+ .....-.+.+.|+.+....+...+.... +.+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 4667788889999999999999999998874 3444332 1111223356777777777777665432 1111122222
Q ss_pred HHHHHccCCHHHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Q 002975 531 ISMYSRCANVEAAFQVFKEMEDRN---VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLI 606 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 606 (861)
........+++.|+.+-++..+-| +..+-.-...+.+.|+.++|.-.|+..+. +.| +..+|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 223334578888988888777544 44444444677889999999999999988 676 467999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHH-HHh-hhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHhCCHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMV-DLL-GRSGSLTEALEFIRSM-PLSADVL-VWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~-~~~-~r~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
.||.-.-+...+.. ..+..+...+. +.+ -..---++|.+++++. ..+|+.. ..+.+...|...|..+.++..++
T Consensus 385 kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99987776655332 22333333332 222 2233457899999886 4778743 56677788999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 002975 683 MILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLA 762 (861)
Q Consensus 683 ~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 762 (861)
+.+...|| ...++.|++++...+.+.+|.+.+..... ..|+.+.-..-+..+.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHH
Confidence 99999984 57889999999999999999998886654 3566666666667766
Q ss_pred HHHH
Q 002975 763 LKIK 766 (861)
Q Consensus 763 ~~~~ 766 (861)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-05 Score=88.68 Aligned_cols=558 Identities=13% Similarity=0.015 Sum_probs=286.2
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHh
Q 002975 114 VILNSLISLYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELG-FCPNEYCFSAVIRAC 190 (861)
Q Consensus 114 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~ 190 (861)
..|..|-..|...-+...|.+.|+..-. .-|..+|......|++...++.|+.+.-.--+.. ...-..-|...--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4677788888877788889999887722 2466778889999999999999888833222110 000011122222224
Q ss_pred cCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhcCCchHH
Q 002975 191 SNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEKNTVGWTL---MITRCTQLGCPRDA 267 (861)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A 267 (861)
-..++...+..-++...+.. |.|...|..|..+|.. +|++..|.++|++...-+..+|-. ....-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 45556666666666666665 6777788888888888 888888888887766544333322 12233556777777
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHH-HhCCCCCCHHHHHHHHhc
Q 002975 268 IRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMY-AKCTVDGSVDDSRKVFDR 346 (861)
Q Consensus 268 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-~~~g~~g~~~~A~~~~~~ 346 (861)
++.+......- .++. .+....|+.+...... ..++.+ .+.-+ -++++.+.|.-
T Consensus 650 ld~l~~ii~~~-----s~e~--------~~q~gLaE~~ir~akd-----------~~~~gf~~kavd--~~eksie~f~~ 703 (1238)
T KOG1127|consen 650 LDALGLIIYAF-----SLER--------TGQNGLAESVIRDAKD-----------SAITGFQKKAVD--FFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHH-----HHHH--------HhhhhHHHHHHHHHHH-----------HHHHHHhhhhhH--HHHHHHHHHHH
Confidence 77776654320 0000 0111111111111100 000000 00000 01111211111
Q ss_pred cCC----CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---H---HHHHHHHHHHH
Q 002975 347 MLD----HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---N---VAEQVYTHAVK 416 (861)
Q Consensus 347 ~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~ 416 (861)
... .+...|-. ...|..+|.+..- . .|+......+..-.-..+.. + .|.+.+.. .
T Consensus 704 ~l~h~~~~~~~~Wi~-----------asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--h 768 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIV-----------ASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--H 768 (1238)
T ss_pred HHHHhhhhhHHHHHH-----------HhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--H
Confidence 110 01111111 1123333333221 1 22222222222212222222 1 11111111 1
Q ss_pred cCCCCCcchhhHHHHHHHH----cC----CHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCC
Q 002975 417 RGRALDDCVGNSLISMYAR----SG----RMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGV 485 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 485 (861)
..+..+...+..|...|.+ +| +...|...+.... ..+...||.|.-. ...|.+.-|.-.|-+-... .
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-e 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-E 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-c
Confidence 1112223333333332222 22 2235566665542 3455677776554 5556666666655554433 2
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc-----c---CCCchH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM-----E---DRNVIS 557 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~ 557 (861)
+....+|..+.-.|....+++.|.+.+...+... +.+...|-...-.-...|+.-++..+|..- . -++..-
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 4456677777777788888888888888877653 334444433333334567777777777641 1 144555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD--------GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|-.-..-..++|+.++-+...+.+-.. +-.|+ ...|...+....+.+.+++|.+...+...-...+-+...
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq 1005 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ 1005 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555445556666665544433332211 12344 567888888888888888888777766533333344445
Q ss_pred HHH----HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH---HH
Q 002975 629 YAC----MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS---NL 701 (861)
Q Consensus 629 ~~~----l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~---~~ 701 (861)
|+. ...++...|.++.|..-+...+.+.|..+.++-+.. .-.|+++.+...+++++.+--++...-++++ ..
T Consensus 1006 ynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~ 1084 (1238)
T KOG1127|consen 1006 YNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVC 1084 (1238)
T ss_pred hhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHH
Confidence 553 334555677777777666665555555554444443 4467888888888888887655554334333 33
Q ss_pred HHHcCChhHHHHHHHHHH
Q 002975 702 YASAGHWEYVANIRKRMK 719 (861)
Q Consensus 702 y~~~g~~~~a~~~~~~m~ 719 (861)
...++.-+.|....-+..
T Consensus 1085 ~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1085 MGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HhhcccchHHHHHHHHHH
Confidence 445556666665544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.7e-06 Score=81.31 Aligned_cols=378 Identities=12% Similarity=0.071 Sum_probs=207.0
Q ss_pred HHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC
Q 002975 326 DMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL 402 (861)
Q Consensus 326 ~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 402 (861)
..|.+.|+ +++|..++..+.+. +...|-.+.-.+.-.|. +.+|..+-.+.. -+.-....++....+.+
T Consensus 65 ~C~fhLgd---Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 65 HCYFHLGD---YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHhhcc---HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 34445444 66666655554332 23344444444444455 556655544321 12222333444445566
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCeehHHHH-HHHHHhcCChhHHHHHHHH
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNLVSYNTM-VDAYAKNLNSEKAFELLHE 479 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~ 479 (861)
+-++-..+++.+.+.- .-.-+|..+.-..-.+++|++++.++.. |+....|.- .-+|.+..-++-+.+++.-
T Consensus 136 dEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred cHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 6666666665554321 1112334443334457777777777643 333344443 3355666666666666655
Q ss_pred HhhcCCCCCHHHHHHHHHHhhcccchHHHHH--------------HHHHHHHhCC-----------------CCchhHHH
Q 002975 480 IEDTGVGTSAYTFASLLSGASSIGAIGKGEQ--------------IHARIIKSGF-----------------ESNHCIYN 528 (861)
Q Consensus 480 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~--------------~~~~~~~~~~-----------------~~~~~~~~ 528 (861)
-.++ ++-+.+..+.......+.=+-..|.+ ..+.+.+.++ ..-+..--
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 4433 22222233322222222111111111 1111222110 00122234
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChH-HHHHHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGF-------AARALEIFYKMLADGIKPNGI-TYIAVLSAC 600 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 600 (861)
.|+-.|.+.+++++|..+.++...-.+.-|-.-.-.++.+|+ ..-|.+.|+-.-+++..-|.+ ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 556678899999999999988764343333222222333333 344555555544555555543 234556666
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHh-CCHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS--ADVLVWRTFLGACRVH-GDTELG 677 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~--p~~~~~~~ll~~~~~~-g~~~~a 677 (861)
--..++|+.+.+++.+. .|=...|...|+ +..+++..|++.+|+++|-....+ .|..+|.+++.-|..+ |..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778999999999887 555555555554 678899999999999999887422 3678898888777665 566655
Q ss_pred HHHHHHHhccCC-CC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 678 KHAAEMILEQDP-QD-PAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 678 ~~~~~~~~~~~p-~~-~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
++..++.+. .+ .....++++.+.+.+.+--|.+.+..+.....
T Consensus 448 ---W~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 ---WDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred ---HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 455566543 22 23455789999999999999998887765433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-06 Score=80.76 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=153.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhc
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKH 568 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 568 (861)
..-+.-.|.+.|+...|+.-++++++.. +.+..++..+...|.+.|+.+.|.+.|+...+ .+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3445556777777778887777777765 56677888888899999999999999987663 4567788888888999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~ 646 (861)
|++++|...|++....-.-|. ..||.++.-+..+.|+.+.|..+|++..+ +.|+ ......+.+.....|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999888533333 45888888888899999999999988773 3343 345667788888999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
.+++... ..+...+.--.+..-...||.+.+-+.-.++....|....
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9988763 4466666656667778889999988888888888887644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-05 Score=81.92 Aligned_cols=451 Identities=13% Similarity=0.143 Sum_probs=231.3
Q ss_pred cchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHH--HHH
Q 002975 44 EPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNS--LIS 121 (861)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~ 121 (861)
..+++.+-.+..+|.+++|+..-..+...+ +-|..++.+-+-++.....++.|+.+.. ..+. ..+++. +=.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHH
Confidence 356667778889999999999999999877 5567777788888888889999885522 2221 112222 355
Q ss_pred HHh--cCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHhcCCcchhh
Q 002975 122 LYS--KCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCP-NEYCFSAVIRACSNTENVAI 198 (861)
Q Consensus 122 ~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 198 (861)
+|| +.+..++|+..++.... .|..+-..-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-... .
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~ 160 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----Q 160 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----h
Confidence 666 67899999999995544 444455555667789999999999999998764321 111122222221111 1
Q ss_pred hhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcC--------CCCCcc----------hHHHHHHHHHh
Q 002975 199 GHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKM--------TEKNTV----------GWTLMITRCTQ 260 (861)
Q Consensus 199 a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~~~ 260 (861)
+. +.+.+... ...+-..+-.....+.. .|++.+|+++++.. .+.|.. .--.|.-++-.
T Consensus 161 ~~-~~q~v~~v--~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 161 VQ-LLQSVPEV--PEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HH-HHHhccCC--CcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 11122233334445555 89999999999876 111111 11224456677
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcccH---HHHHHHHhccCCchHH--HHHHHHHH-----------HhCCCCccchHHHH
Q 002975 261 LGCPRDAIRLFLDMILSGFLPDRFTL---SGVVSACSELELFTSG--KQLHSWAI-----------RTGLALDVCVGCSL 324 (861)
Q Consensus 261 ~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~~~~~l 324 (861)
.|+-++|..++....+... +|.... ..-|.+.....++-.+ .+.+.... ...-.-....-+.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998887643 343222 2222223322222221 11111000 00000111222345
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCCC-cccHHHHHHHHHhcCC-ChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHhcc
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLDHN-VMSWTAIITGYVQSGG-RDKEAVKLFSDMIQGQVAPNH--FTFASVLKACGN 400 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 400 (861)
+.+|... .+.++++-...+... ...+..++....+... ....+.+++...-+. .|.. ......+.....
T Consensus 316 L~l~tnk-----~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 316 LALFTNK-----MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHhhh-----HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 5555432 555555555554432 2223333332222111 134444554444332 2222 222333344455
Q ss_pred cCChHHHHHHHH--------HHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhH
Q 002975 401 LLDSNVAEQVYT--------HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEK 472 (861)
Q Consensus 401 ~~~~~~a~~i~~--------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 472 (861)
.|+++.|.+++. .+.+.+ ..+.+..+++.+|.+.++.+.|..++++..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai---------------------- 444 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAI---------------------- 444 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHH----------------------
Confidence 666666666665 222222 222333445555555555444444444331
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHH----HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 473 AFELLHEIEDTGVGTSAYTFASLL----SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 473 A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
..++. -.+......+++ ..-.+.|+.++|...++.+.+.+ ++|..+...++.+|++. +.+.|..+-.
T Consensus 445 --~~~~~-----~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 --KWWRK-----QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred --HHHHH-----hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 00000 111112222222 12233466666666666666654 56777777777777764 5666666655
Q ss_pred hcc
Q 002975 549 EME 551 (861)
Q Consensus 549 ~~~ 551 (861)
.+.
T Consensus 516 ~L~ 518 (652)
T KOG2376|consen 516 KLP 518 (652)
T ss_pred cCC
Confidence 554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-07 Score=88.09 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=170.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHH-HHHHHhhcc
Q 002975 426 GNSLISMYARSGRMEDARKAFESLF--EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFA-SLLSGASSI 502 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~ 502 (861)
-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3567788888899999998888763 356678888888999999999999998887753 56666654 455667778
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHH
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFY 579 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 579 (861)
++.+.+.++++.+.+.. +.++.....+...|.-.++.+-|+..|+++.+ .+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 88889999998888865 55666666677778888899999999987764 566788888888888899999999999
Q ss_pred HHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 580 KMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 580 ~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
+.+..-..|+. ..|..+.......|++.-|.+.|+.... .-....+.++.|.-+-.|.|++++|..+++.+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88886555663 3677777777778888889888887662 112234667777777788888888888887663
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00018 Score=78.63 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCcchHHHHHH--HHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002975 111 PNSVILNSLIS--LYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLE 173 (861)
Q Consensus 111 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (861)
-|..+-..+++ .|..-|+++.|.+-.+.+ .+...|..|.+.|++..+.+-|.-++-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 45666666665 577889999998888777 4456799999999999999999888888863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00011 Score=80.09 Aligned_cols=136 Identities=10% Similarity=0.179 Sum_probs=72.2
Q ss_pred HhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHc--------CC-CCCcchHHHHHHHH
Q 002975 53 HLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRS--------KL-EPNSVILNSLISLY 123 (861)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~-~~~~~~~~~ll~~~ 123 (861)
|+.-|+.+.|++-.+.+. +...|..+.+.|.+.++++.|+-.+..|... .. .++ ..-....-.-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 345566777766555443 3456777777777777777776555554321 11 111 2222222223
Q ss_pred hcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhh
Q 002975 124 SKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIY 203 (861)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 203 (861)
...|.+++|..++.+-.. |..|=..|-..|.|++|+++-+.=-+-.++ .||-.-..-+-..+|.+.|.+.+
T Consensus 811 ieLgMlEeA~~lYr~ckR------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHH
Confidence 355777777777766554 555555566677777777766553322222 23333333333445555555544
Q ss_pred h
Q 002975 204 G 204 (861)
Q Consensus 204 ~ 204 (861)
+
T Consensus 882 E 882 (1416)
T KOG3617|consen 882 E 882 (1416)
T ss_pred H
Confidence 3
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00047 Score=77.42 Aligned_cols=178 Identities=10% Similarity=-0.012 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHh
Q 002975 59 VQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKS 138 (861)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 138 (861)
...|+..|-+..+..+ .=...|..|-..|...-+...|.+.|..+.+... .+...+....+.|++...++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555544321 1123455555555555566667777777766553 3566777788888888888888877433
Q ss_pred cCCCC--CceeHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCC
Q 002975 139 MGNKR--DIVSWSSMIS--SYVNRGKQVDAIHMFVEMLELGFCP-NEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFD 213 (861)
Q Consensus 139 ~~~~~--~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 213 (861)
..++. -...||.+-. .|.+.++..+|..-|+...+. .| |...|..+..+|...|....|..++..+.... |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 32210 1112222222 234455555555555555442 22 44455555566666666666666655554433 2
Q ss_pred CchhHHHHHHHHhhhCCCCHHHHHHHHhcC
Q 002975 214 SDVCVGCALIDMFVKGSVDLESAYKVFDKM 243 (861)
Q Consensus 214 ~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~ 243 (861)
.+.+..--..-+-+. .|.+.+|...++.+
T Consensus 628 ~s~y~~fk~A~~ecd-~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECD-NGKYKEALDALGLI 656 (1238)
T ss_pred HhHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 333333233333333 45555555554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-07 Score=95.42 Aligned_cols=214 Identities=12% Similarity=0.138 Sum_probs=152.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
+.|++.+|.-.|+..++.. +.+...|--|.-.....++-..|+..+++..+ .|....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555443 44556666666666666666666666666653 2445555666677777777777777
Q ss_pred HHHHHHcCCCCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 578 FYKMLADGIKPNGI---------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 578 ~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
++.=+... |-.. .+.. -..+.+...+....++|-.+....+..+|.+++.+|.-+|.-.|.+++|.+.
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 76655421 1100 0000 0122223334455666767766777778889999999999999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 649 IRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 649 ~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|+.+. .+| |..+||-|+..+....+.++|+.+|.+++++.|.-....+.|+-.|...|.++||.+.+-..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99874 555 68899999999999999999999999999999999999999999999999999999876644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00027 Score=75.82 Aligned_cols=408 Identities=15% Similarity=0.146 Sum_probs=234.1
Q ss_pred CCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHhccCCchHHHHH
Q 002975 230 SVDLESAYKVFDKMTE---KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTL-SGVVSACSELELFTSGKQL 305 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i 305 (861)
.|+-++|......-.. ++.+.|..+.-.+-...++++|+..|...... .||.... .-+--.=++.++++..
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~--- 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGY--- 128 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhH---
Confidence 5667777766655444 45677888877777788888888888877653 3443221 1000000111111111
Q ss_pred HHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCC-C
Q 002975 306 HSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ-V 384 (861)
Q Consensus 306 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g-~ 384 (861)
. +.+..+-+........|..+..++.-.|. ...|..++++..+.. -
T Consensus 129 -------------------------------~-~tr~~LLql~~~~ra~w~~~Avs~~L~g~-y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 129 -------------------------------L-ETRNQLLQLRPSQRASWIGFAVAQHLLGE-YKMALEILEEFEKTQNT 175 (700)
T ss_pred -------------------------------H-HHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 1 11111111122345678888888888888 999999999887654 3
Q ss_pred CCChhhHHHHHH------HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC--Ceeh
Q 002975 385 APNHFTFASVLK------ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK--NLVS 456 (861)
Q Consensus 385 ~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~ 456 (861)
.|+...|..... .....|.++.|.+.+..-... +......-..-.+.+.+.+++++|..++..+..+ |..-
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 456655543322 234567777777666544322 1222333445667889999999999999998654 4444
Q ss_pred HHHH-HHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 457 YNTM-VDAYAKNLNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 457 ~~~l-i~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
|.-. ..++.+-.+.-+++ .+|....+.- +........=++......-.+....++....+.|+++ ++..+...|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHH
Confidence 4444 34443344444454 5555554331 1111111111111111222333444556666777654 444455444
Q ss_pred HccCCHHH----HHHHHHhcc--------------CCCchHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HH
Q 002975 535 SRCANVEA----AFQVFKEME--------------DRNVISWTS--MITGFAKHGFAARALEIFYKMLADGIKPNGI-TY 593 (861)
Q Consensus 535 ~~~g~~~~----A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 593 (861)
-.-...+- +..+...+. .|....|+. ++..|-..|+++.|..+.+..+. -.|+.+ -|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH
Confidence 33222211 111222221 133445554 66778899999999999999988 578754 66
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-C--------HHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIV-QRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-D--------VLVWRT 663 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~--------~~~~~~ 663 (861)
..=...+.|.|++++|..++++.. ++. ||...-+--+.-+.|+.+.++|.++......+. + ...|--
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 666788999999999999999887 332 344333345667789999999999877663211 1 345655
Q ss_pred HH--HHHHHhCCHHHHHHHHHHHh
Q 002975 664 FL--GACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 664 ll--~~~~~~g~~~~a~~~~~~~~ 685 (861)
+- .+|.+.|++-+|.+=+..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 43 45777777776665444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-07 Score=90.93 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH---HHHHHHHhhhcCC
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH---YACMVDLLGRSGS 641 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~r~g~ 641 (861)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+.++.-.++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchh
Confidence 33456666666555331 223344445556666666666666666665 22333221 2233333333346
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh-hHHHHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW-EYVANIRKRM 718 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~-~~a~~~~~~m 718 (861)
+.+|.-+|+++. ..+++.+.+.++.+....|++++|+..++++++.+|.++.+...++-+....|+. +.+.+.+..+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777777763 3456777777888888889999999999999999999988888888888888988 5567777777
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-05 Score=83.35 Aligned_cols=257 Identities=7% Similarity=-0.036 Sum_probs=142.1
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH---HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS---LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
.+...|++++|.+++++..... +.|...+.. ........+....+.+.+... ....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 4456677777777777766542 222223321 111111233444444444331 11112223344455667777888
Q ss_pred HHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HHHHHHHHHHHhcCCHHHHHHHH
Q 002975 540 VEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGI-KPNG--ITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 540 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
+++|.+.+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877663 3455667777778888888888888887776421 1222 23445667777888888888888
Q ss_pred HHHHhhcCCCCChhHH-H--HHHHHhhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 614 RSMYDEHGIVQRMEHY-A--CMVDLLGRSGSLTEALEF---IRS---M-PLSADVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~-~--~l~~~~~r~g~~~eA~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
+.........+..... + .+...+...|..+.+..+ ... . +.............++...|+.+.|...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7765222211211111 1 222333334432222222 111 1 1111112222455566777888888888877
Q ss_pred HhccCC---------CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 684 ILEQDP---------QDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 684 ~~~~~p---------~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+...-- .........+.++...|++++|.+.+......
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 665221 13455668888999999999999988877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0013 Score=70.85 Aligned_cols=580 Identities=12% Similarity=0.101 Sum_probs=317.1
Q ss_pred HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCChhHHHH
Q 002975 89 IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGKQVDAIH 166 (861)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 166 (861)
-..+.+..++.+.+.+++.-++ ...+.....-.+...|+-++|......- ....+.+.|..+.-.+....++++|+.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3455666677666666663322 2333332222345567888887777654 223567789988888888889999999
Q ss_pred HHHHHHHcCCCCCcc-cHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC
Q 002975 167 MFVEMLELGFCPNEY-CFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE 245 (861)
Q Consensus 167 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~ 245 (861)
+|...... .||.. .+--+--.-+..+++ .+-..+++.++.. ..
T Consensus 97 cy~nAl~~--~~dN~qilrDlslLQ~QmRd~----------------~~~~~tr~~LLql------------------~~ 140 (700)
T KOG1156|consen 97 CYRNALKI--EKDNLQILRDLSLLQIQMRDY----------------EGYLETRNQLLQL------------------RP 140 (700)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHHHhh----------------hhHHHHHHHHHHh------------------hh
Confidence 99987763 33321 111000000011111 1111222222211 11
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHH------HhccCCchHHHHHHHHHHHhCCCCcc
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSG-FLPDRFTLSGVVSA------CSELELFTSGKQLHSWAIRTGLALDV 318 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~ 318 (861)
..-..|..+..++--.|++..|..+.++..+.. -.|+...|.-...- ....|.++.+.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 245678888888888999999999998887664 34565555433322 33455555555544332211 11122
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHhccCCCC--cccHHH-HHHHHHhcCCChHHHH-HHHHHHhhCCCCCChhhHHHH
Q 002975 319 CVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHN--VMSWTA-IITGYVQSGGRDKEAV-KLFSDMIQGQVAPNHFTFASV 394 (861)
Q Consensus 319 ~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~~A~-~l~~~m~~~g~~p~~~t~~~l 394 (861)
...-.-.+.+.+.++ +++|..++..+..+| ...|+- +..++.+--+ .-+++ .+|....+. .+-....-..=
T Consensus 220 a~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d-~~~~lk~ly~~ls~~-y~r~e~p~Rlp 294 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQ---LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKD-MLEALKALYAILSEK-YPRHECPRRLP 294 (700)
T ss_pred HHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhc-Ccccccchhcc
Confidence 223344566777666 999999999987653 344443 3344432222 23333 555554332 11111111111
Q ss_pred HHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHH----HHHHHHhcC--------------CCCeeh
Q 002975 395 LKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMED----ARKAFESLF--------------EKNLVS 456 (861)
Q Consensus 395 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~--------------~~~~~~ 456 (861)
++......-.+.....+....+.|+++ ++..+...|-.-...+- +..+...+. .|....
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 122222333344556666667777654 33334444432221111 111111111 122233
Q ss_pred H--HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 457 Y--NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 457 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
| --++..|-..|+++.|+..++.... ..|+.+ -|..=.+.+...|.++.|..++....+.. .+|..+-.--...
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 4 4467778889999999999998884 467655 34444577888999999999999998876 5677666677777
Q ss_pred HHccCCHHHHHHHHHhccCCC--c--------hHHHHH--HHHHHhcCChHHHHHHHHHHHHc--CC---CCCh------
Q 002975 534 YSRCANVEAAFQVFKEMEDRN--V--------ISWTSM--ITGFAKHGFAARALEIFYKMLAD--GI---KPNG------ 590 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~~~--~--------~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~------ 590 (861)
..+.+++++|.++.......+ . -.|-.+ ..+|.+.|++.+|++-|....+. .+ +-|-
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~r 528 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMR 528 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHh
Confidence 888999999999887766422 1 234443 35677888888888777665542 01 1222
Q ss_pred ----HHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhcCC----CCChhHHH-HHHHHhhhcC-CHHHHHHHHHhC-
Q 002975 591 ----ITYIAVLSACSHAGL-------ISEGWKHFRSMYDEHGI----VQRMEHYA-CMVDLLGRSG-SLTEALEFIRSM- 652 (861)
Q Consensus 591 ----~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~----~p~~~~~~-~l~~~~~r~g-~~~eA~~~~~~~- 652 (861)
.+|.-++.-+-..-. -..|++++-.|.+.-.. .++.+..+ -......++. .-..|.+.-+.+
T Consensus 529 k~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~ 608 (700)
T KOG1156|consen 529 KGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKK 608 (700)
T ss_pred cCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332221111 12455555555422101 11122211 0111111111 111121111111
Q ss_pred -------------CCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 -------------PLSADVLVWRTFLGACRVHG-DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 -------------~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|..+|.. -+.....+.. -.++|...+..+....+++..+|.+-+.+|.+.|++.-+....+..
T Consensus 609 ~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~ 685 (700)
T KOG1156|consen 609 DKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNA 685 (700)
T ss_pred HHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 2233433 2333333333 4677999999999999999999999999999999999988877655
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
..
T Consensus 686 ~~ 687 (700)
T KOG1156|consen 686 EG 687 (700)
T ss_pred hh
Confidence 44
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=88.39 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...|.+.|++++|++++++. ...|. +..|..-...+...|+++.|....+.+.++++.|--...-.+..+.+.|
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 344456667777777777777764 34554 4456666666777777777777777777777777666667777777777
Q ss_pred ChhHHHHHHHHHHhCCC
Q 002975 707 HWEYVANIRKRMKERNL 723 (861)
Q Consensus 707 ~~~~a~~~~~~m~~~~~ 723 (861)
+.++|.++.......+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHhhcCCCC
Confidence 77777777776655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-05 Score=84.67 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=127.9
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCe--eh-HHHHHHHHHhc-----
Q 002975 396 KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNL--VS-YNTMVDAYAKN----- 467 (861)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~li~~~~~~----- 467 (861)
..+...|+++.|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.+.|+ .. |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445667777777777553332 334445566667777777777777777777754433 22 33333333111
Q ss_pred CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 002975 468 LNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIG-KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQV 546 (861)
Q Consensus 468 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 546 (861)
...+...++++++...- |.......+.-.+.....+. .+..+.....+.|+++ +++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 23555666666665443 33333333322222222222 3344445555556433 555666666654444444444
Q ss_pred HHhccC------------------CCchHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCC
Q 002975 547 FKEMED------------------RNVISW--TSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGL 605 (861)
Q Consensus 547 ~~~~~~------------------~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 605 (861)
+..... |....| .-+...|-..|++++|+++.++.++ ..|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 443220 111123 3344555566666666666666666 4555 3355556666666666
Q ss_pred HHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 606 ISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
+++|.+.++... .+.+ |...-+.-+..+.|+|++++|.+.+...
T Consensus 244 ~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 666666666555 3333 2223333445566666666666666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-05 Score=74.16 Aligned_cols=312 Identities=12% Similarity=0.112 Sum_probs=172.4
Q ss_pred ccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH---HHhcccCChHHHHHHHHHHHHcCCCCCcchh-hH
Q 002975 353 MSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVL---KACGNLLDSNVAEQVYTHAVKRGRALDDCVG-NS 428 (861)
Q Consensus 353 ~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~ 428 (861)
.-.--+-..+...|+ +..|+.-|...++ .|...|..+. ..|...|+...|..=+..++.. .||-..- --
T Consensus 39 ekhlElGk~lla~~Q-~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 39 EKHLELGKELLARGQ-LSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334455666777777 7788888777755 2333444443 3455666666666666666554 3332111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKG 508 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 508 (861)
-...+.+.|.+++|..-|+.+.+.++.- +.-..++.+.-..++-. .....+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 1234556777777777776664433210 01111111111111111 122233445566777888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 509 EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
......+++.. +-|...+..-.++|...|++..|+.-++... ..|..+.--+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 88888777754 5677778888888888888888876665443 45666666667777888888888888888888
Q ss_pred CCCChHH-HHHH------H------HHHHhcCCHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHH
Q 002975 586 IKPNGIT-YIAV------L------SACSHAGLISEGWKHFRSMYDEHGIVQR-----MEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 586 ~~p~~~t-~~~l------l------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
+.||... |... . ......+.|.++.+-.+... ...|. ...+..+-..+...|++-||+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 7788542 2111 0 01122334444444444433 12232 1122233344555666666666
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 648 FIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 648 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
...+. ...|| +.++.--..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 55554 23343 4455555556666666666666666666666665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-05 Score=78.39 Aligned_cols=371 Identities=13% Similarity=0.099 Sum_probs=236.4
Q ss_pred HHHhCCCCCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccC
Q 002975 327 MYAKCTVDGSVDDSRKVFDRML---DHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLL 402 (861)
Q Consensus 327 ~y~~~g~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 402 (861)
+....|+ ++.|...|.+.. .+|.+.|..-..+|+..|+ +++|++=-.+-++ +.|+ ...|.-.-.+....|
T Consensus 11 aa~s~~d---~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 11 AAFSSGD---FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRR--LNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred hhccccc---HHHHHHHHHHHHccCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcc
Confidence 3444555 999999998763 3478889999999999999 9988876666554 4564 456888888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc-----CCCC--------eehHHHHHHHHHhc--
Q 002975 403 DSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL-----FEKN--------LVSYNTMVDAYAKN-- 467 (861)
Q Consensus 403 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~--------~~~~~~li~~~~~~-- 467 (861)
++++|..-|.+-++.. +.+...++-|.+++.-. ..+.+.|..- ...+ ...|..++..+-++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9999999999877764 55666777777777111 1111222110 0001 12333343332221
Q ss_pred --------CChhHHHHHHHHH-----hhcC-------CCC------------C----------HHHHHHHHHHhhcccch
Q 002975 468 --------LNSEKAFELLHEI-----EDTG-------VGT------------S----------AYTFASLLSGASSIGAI 505 (861)
Q Consensus 468 --------g~~~~A~~l~~~m-----~~~g-------~~p------------~----------~~t~~~ll~a~~~~~~~ 505 (861)
.+...|.-.+... ...| ..| | ..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111222111110 0011 111 0 01234556666666777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCch----------HHHHHHHHHHhcCChHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVI----------SWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~ 575 (861)
..+.+-+...++.. .+..-++....+|...|.+.+.....+...+.... +...+..+|.+.++++.|+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 78888887777765 56666677778888888887776666654432211 2222445677778889999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH-HHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH-YACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.+|++.+..-..||..+ +....+++....+... -+.|.... .-.=..-+.+.|++.+|+..+.++.
T Consensus 319 ~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 99988776544544221 2223344444333322 33443311 1112566778899999999998873
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 654 LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 654 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
..| |...|.....++.+.|++..|..-++..++++|+....|.-=+-++....+|++|.+.+.+..+.
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334 67788888888889999999999999999999999999998899999999999999988877663
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0012 Score=69.31 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES-NHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
.+...+.++++...-..--..+|...++..-+..-++.|+.+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555543222223456666777777777888888888887776655 7778888888776 467777888887
Q ss_pred hccC--CCchHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--
Q 002975 549 EMED--RNVISW-TSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHG-- 621 (861)
Q Consensus 549 ~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 621 (861)
--.+ +|...| +..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5442 344333 44566666777777888888888877666663 4677777777777888777777777665554
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHH
Q 002975 622 IVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
..+...+-..+++.|+-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 444444455556666555544433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-05 Score=91.39 Aligned_cols=294 Identities=11% Similarity=0.003 Sum_probs=173.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcC----CCC---e---e--hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----H
Q 002975 427 NSLISMYARSGRMEDARKAFESLF----EKN---L---V--SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSA----Y 490 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 490 (861)
......+...|++++|...++... ..+ . . ....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334444556677777666665441 111 1 0 1111223445678888888888776543111121 2
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------CC----
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKS----GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------RN---- 554 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~---- 554 (861)
..+.+...+...|+++.|...+...... |- .........+...+...|++++|...+++... ++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3344455566778888888777766542 21 11123445566677788888888887776542 11
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHH-
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADG--IKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHY- 629 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 629 (861)
...+..+...+...|++++|...+++..... ..+. ..++..+.......|+.++|...++..............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1233445556667788999888888776531 1122 2344445666778888888888887775321111111111
Q ss_pred ----HHHHHHhhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC------CCCc
Q 002975 630 ----ACMVDLLGRSGSLTEALEFIRSMPLS--ADV----LVWRTFLGACRVHGDTELGKHAAEMILEQDP------QDPA 693 (861)
Q Consensus 630 ----~~l~~~~~r~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 693 (861)
......+...|+.+.|.+++...... ... ..+..+..++...|+.+.|...++++++... +...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11123445678888888888765311 111 1234566667788899999998888887522 1234
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++..++.+|...|+.++|.+.+....+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888899999999999888877765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=78.62 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.+|++.++ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 45553 4445666677777777777777766 3334 45566677777777777777777777763
Q ss_pred C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 654 L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 654 ~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
. +.++..|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3 33677888888888899999999999999999999999988887776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=75.80 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=98.5
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+.+..-.+...+...|++++|..+|+-.. ..| +..-|-.|...|+..|+++.|+.+|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34445556677788999999999998863 344 6778999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002975 703 ASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIK 766 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 766 (861)
...|+.++|.+.++...... + .+|+..+|.++.+.....+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999999776521 1 46778888877777665554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-06 Score=90.96 Aligned_cols=219 Identities=14% Similarity=0.056 Sum_probs=119.2
Q ss_pred CCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002975 419 RALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498 (861)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 498 (861)
++|-......+...+.+.|-..+|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||+..|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly------ 460 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY------ 460 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH------
Confidence 3454555566777778888888888888776 3566677777777777777777666654 24444444
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHH
Q 002975 499 ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 499 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
..|.+......-+++|.++++....+--..|+. -....++++++.+.|
T Consensus 461 -----------------------------c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 461 -----------------------------CLLGDVLHDPSLYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHL 508 (777)
T ss_pred -----------------------------HHhhhhccChHHHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHH
Confidence 444444444444455555555433221111111 112356677777777
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--C
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--L 654 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~ 654 (861)
+.-.+ +.|- ..+|..+..+..+.++++.|.+.|.... ...|+ .+.|+.+-.+|.+.|+..+|...++++- .
T Consensus 509 e~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 509 ERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 66665 3342 4466666666666667777666666554 23332 2333444444444444444444433331 1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
.-+..+|....-.....|..+.|++++.+++++
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 122345555555555666666666666665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-06 Score=85.02 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=90.7
Q ss_pred HHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--c--CCH
Q 002975 531 ISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH--A--GLI 606 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--g~~ 606 (861)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++.. . +.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 34555666677666666554 3444445556666677777777777777765 3333 233334443322 2 246
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCH-HHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDT-ELGKHAAEM 683 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 683 (861)
.+|..+|+++.+.+ .++....+.+..+....|+++||.+++++.. ..| ++.++-.++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 67777777765433 3555666666677777777777777776642 233 345666666666666766 667778888
Q ss_pred HhccCCCCC
Q 002975 684 ILEQDPQDP 692 (861)
Q Consensus 684 ~~~~~p~~~ 692 (861)
+...+|+++
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=80.55 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-c---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH----
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--RN-V---ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI---- 591 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 591 (861)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..|+++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 4456677788888889999999999987764 32 1 3667788888899999999999999988 345422
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 002975 592 TYIAVLSACSHA--------GLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWR 662 (861)
Q Consensus 592 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~ 662 (861)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+.. .+...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 455555666554 6788888888887743 34322 1111111 11111110 01122
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...+...|+.+.|+..++++++..|+++ .++..++.+|...|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999999987654 68899999999999999999998877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-05 Score=77.37 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=64.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HHhCC--HHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGAC-RVHGD--TELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
...|..+...|...|++++|.+.+++.. ..| +..+|..+..+. ...|+ .+.|..+++++++++|+++.++..|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 3444444445555555555555554442 233 556666666653 55565 488888888888888888888888888
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 002975 701 LYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...|++++|...++++.+.
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888877663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00028 Score=76.05 Aligned_cols=195 Identities=12% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCc--hHHHHHHHHH
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-----RNV--ISWTSMITGF 565 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~ 565 (861)
..+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++... ++. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 344445566666666666666666654 44455666677777777777777777776553 111 2344566677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhhcCC-CCChhHHHHHHHHhhh
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITY-I--AVLSACSHAGLISEGWKH--FRSMYDEHGI-VQRMEHYACMVDLLGR 638 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~r 638 (861)
...|++++|+.+|++.......+. .... . .++.-+...|..+.+.++ .........- ......-...+..+..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 777777777777777654321111 1111 1 222223333433222222 1111101000 0011111234556677
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 639 SGSLTEALEFIRSMP--LSA---D------VLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
.|+.++|...++.+. ... . ..+.-....++...|+.+.|...+..++.+-
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888777652 111 1 1111222334667888888888888777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0014 Score=80.63 Aligned_cols=409 Identities=9% Similarity=-0.014 Sum_probs=241.8
Q ss_pred chHHHHHHHHHHHCCC--CC-C----cccHHHHHHHHhcc----CCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCC
Q 002975 264 PRDAIRLFLDMILSGF--LP-D----RFTLSGVVSACSEL----ELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCT 332 (861)
Q Consensus 264 ~~~A~~l~~~m~~~g~--~p-d----~~t~~~ll~a~~~~----~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 332 (861)
.+.+.++++++...|+ .+ + .+.|..++..+... .+.+....+|... ...|...|
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~ra---------------a~~~~~~g 355 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRAA---------------AEAWLAQG 355 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHHH---------------HHHHHHCC
Confidence 3445677777777664 11 1 25566666654432 1233344444433 23344444
Q ss_pred CCCCHHHHHHHHhccCCCCccc--HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 002975 333 VDGSVDDSRKVFDRMLDHNVMS--WTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQV 410 (861)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (861)
+ +.+|..........+... ...........|. .+.+..++..+.......+..........+...|+++++...
T Consensus 356 ~---~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~-~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 356 F---PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGE-LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred C---HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCC-hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 4 666666655554432211 1111223444566 777767766652211111222223333444567889999888
Q ss_pred HHHHHHcCCC------CC--cchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCe----ehHHHHHHHHHhcCChhHHH
Q 002975 411 YTHAVKRGRA------LD--DCVGNSLISMYARSGRMEDARKAFESLFE----KNL----VSYNTMVDAYAKNLNSEKAF 474 (861)
Q Consensus 411 ~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~ 474 (861)
+....+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++++|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8877543111 11 11222234456679999999999887532 121 23455666778899999999
Q ss_pred HHHHHHhhcCCC-----CCHHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHccCCHHH
Q 002975 475 ELLHEIEDTGVG-----TSAYTFASLLSGASSIGAIGKGEQIHARIIKS----GFES---NHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 475 ~l~~~m~~~g~~-----p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~y~~~g~~~~ 542 (861)
..+.+.....-. ....++..+...+...|+++.|.+.+...... +... ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999887643111 11234555666778899999999988876542 2211 23345556677788899999
Q ss_pred HHHHHHhccC------C--CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHH-----HHHHHHHHhcCCHHH
Q 002975 543 AFQVFKEMED------R--NVISWTSMITGFAKHGFAARALEIFYKMLADGIK-PNGITY-----IAVLSACSHAGLISE 608 (861)
Q Consensus 543 A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~ 608 (861)
|...+++... + ....+..+...+...|++++|...+++.....-. .....+ ...+..+...|..+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9998887642 1 1234445667788999999999999888653111 111111 112234455789999
Q ss_pred HHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHhCCHHHHH
Q 002975 609 GWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~ 678 (861)
|..++........-.+. ...+..+..++...|+.++|...+++.. ..++ ..++..+..++...|+.+.|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99988765421100110 1113456678889999999999988762 1112 235556667789999999999
Q ss_pred HHHHHHhccCCCC
Q 002975 679 HAAEMILEQDPQD 691 (861)
Q Consensus 679 ~~~~~~~~~~p~~ 691 (861)
..+++++++....
T Consensus 752 ~~L~~Al~la~~~ 764 (903)
T PRK04841 752 RVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999976543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-06 Score=75.05 Aligned_cols=99 Identities=7% Similarity=-0.081 Sum_probs=87.3
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
.+.|+ .+..+...+...|++++|.+.|+... ..| +...|..+..++...|+++.|+..++++++++|+++.++..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34454 35567888999999999999999874 444 678999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC
Q 002975 699 SNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.+|...|++++|.+.+....+.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999987663
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-05 Score=78.22 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=123.5
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh--HHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA--ARALEI 577 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 577 (861)
..++|..+...+++.. +.+..+|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444432 223334444444444445 45666666665552 3334555444444444442 456666
Q ss_pred HHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc---CC----HHHHHHHH
Q 002975 578 FYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---GS----LTEALEFI 649 (861)
Q Consensus 578 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---g~----~~eA~~~~ 649 (861)
++++++ ..| |..+|.....++.+.|+++++++.++.+++.. .-+...|+....++.+. |. .++++++.
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 666666 334 34566666666666677777777777666321 11223333333333222 22 34566666
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhC----CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-----------------
Q 002975 650 RSM-PLSA-DVLVWRTFLGACRVHG----DTELGKHAAEMILEQDPQDPAAHILLSNLYASAG----------------- 706 (861)
Q Consensus 650 ~~~-~~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g----------------- 706 (861)
+++ ...| |...|+.+.+.+..++ +...+...+.++++.+|.++-+...|+++|+...
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 443 3444 6789999999988743 4566888899999999999999999999998743
Q ss_pred -ChhHHHHHHHHHH
Q 002975 707 -HWEYVANIRKRMK 719 (861)
Q Consensus 707 -~~~~a~~~~~~m~ 719 (861)
..++|.++.+.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 2356777777663
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-07 Score=58.57 Aligned_cols=33 Identities=39% Similarity=0.748 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc
Q 002975 519 GFESNHCIYNALISMYSRCANVEAAFQVFKEME 551 (861)
Q Consensus 519 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 551 (861)
|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-05 Score=90.17 Aligned_cols=207 Identities=16% Similarity=0.190 Sum_probs=160.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--------CCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 512 HARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--------RNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
|++++... +.+...|-..|.-....+++++|++++++... .-...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33344433 44566777777778888888998888887763 1235788888887888888888889998887
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---CHH
Q 002975 584 DGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---DVL 659 (861)
Q Consensus 584 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---~~~ 659 (861)
. ---...|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-++|..+++++. .-| ...
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 3 22245678888888899999999999999988777 566778888888899988888888887752 223 344
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
...-.+..-.++||.+.|..+|+-++.-.|.-...|..+.+.-.+.|..+.++.++++.-..++
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 5566667778889999999999999999999888898888888889999999999988877655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-07 Score=58.57 Aligned_cols=32 Identities=41% Similarity=0.654 Sum_probs=20.9
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHhc
Q 002975 108 KLEPNSVILNSLISLYSKCGDLNEANKIFKSM 139 (861)
Q Consensus 108 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 139 (861)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00027 Score=74.33 Aligned_cols=244 Identities=15% Similarity=0.088 Sum_probs=141.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC------chhHHHHHHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES------NHCIYNALISM 533 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~ 533 (861)
+.++.-+..+++.|++-+....... -+..-++..-.++...|...+....-...++.|... =......+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444444555555555555554332 222223333334445554444444433333332110 01112224457
Q ss_pred HHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHH
Q 002975 534 YSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 612 (861)
|.+.++++.|...|.+...+-.. -....+....++++...+...- +.|+.. -...-...+.+.|++.+|+..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77778888888888875421111 1111223345555555555444 445432 223335667778888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
|.++++.. +-|...|+...-+|.+.|.+.+|++-.+.. ...|+ .-.|.--+.+++...+++.|..+|++.++++|+
T Consensus 381 YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88887332 335567888888888888888887766554 24444 335555566677778999999999999999999
Q ss_pred CCchHHHHHHHHHHcCChhHHHHH
Q 002975 691 DPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 691 ~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
+......+..++..+.....-.++
T Consensus 459 ~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred hHHHHHHHHHHHHHhhcCCCHHHH
Confidence 999988888888765333333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.012 Score=66.16 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcccchHHHH---HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHHHHHH
Q 002975 491 TFASLLSGASSIGAIGKGE---QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWTSMIT 563 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~ 563 (861)
+.+.++..|-+.++..... -+++...... +.|..+--.||..|+-.|-+..|.++|+.+.- .|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3455667777776665333 3333333322 34455556788888888888888888887763 3333332 234
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWK---HFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~---~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
-+...|++..+...+++..+- +.-+ ..+-..+..||. .|.+.+-.+ .=+++. ...-.....+-+..++.+...
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~-~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLM-HSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 455667777777776665542 0111 123333334443 344433322 222222 100111122345566777888
Q ss_pred CCHHHHHHHHHhCCCCC
Q 002975 640 GSLTEALEFIRSMPLSA 656 (861)
Q Consensus 640 g~~~eA~~~~~~~~~~p 656 (861)
++.++=...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 88888888888775333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.5e-05 Score=72.91 Aligned_cols=306 Identities=17% Similarity=0.134 Sum_probs=161.2
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CCeehHHH-HHHH
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE--KNLVSYNT-MVDA 463 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~ 463 (861)
...-+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQS 87 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 33345555555666666777777766655543 33455566677777778888888888877743 22222221 1344
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH--hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG--ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 541 (861)
+-+.+.+.+|+.+...|.+. |+...-..-+.+ ..+.+++..+..+.++.-.. .+..+.+...-..-+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHH
Confidence 55677788888888777643 221111111111 12334444454444443221 13333333333445666677
Q ss_pred HHHHHHHhccC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 542 AAFQVFKEMED----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 542 ~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+|.+-|+...+ .....||.-+ +..+.|++..|+++..++++.|++--+. +. -|...++... +.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rs-- 228 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RS-- 228 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hc--
Confidence 77666666553 2234454433 3345566667777766666666431110 00 0000000000 00
Q ss_pred hhcCCCCChhHHHHHH-------HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 618 DEHGIVQRMEHYACMV-------DLLGRSGSLTEALEFIRSMP----LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~-------~~~~r~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
--.|-.-|-+.++ ..+.+.|+++.|.+-+..|| .+.|+++...+.-. -..++.-.+.+-+.-+++
T Consensus 229 ---vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 229 ---VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred ---ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 0000111222222 24567788888888888876 33466665443321 233455556666666777
Q ss_pred cCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 687 QDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 687 ~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
++|--..++..|--+|++..-++-|..+.-
T Consensus 305 ~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 305 QNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 788777777777778888888877777654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0009 Score=66.11 Aligned_cols=301 Identities=10% Similarity=0.074 Sum_probs=208.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHH---HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHH-HHHHh
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAII---TGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFAS-VLKAC 398 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~ 398 (861)
-|-..+...|+ +.+|+.-|....+-|...|-++. ..|...|+ ..-|+.=|....+ ++||-..-.. --..+
T Consensus 43 ElGk~lla~~Q---~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk-sk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQ---LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK-SKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC-CccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 45555556555 99999999999998888887765 57888898 8888888888876 5787543321 22355
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 399 GNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 399 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
.+.|.++.|.+=|..+++..... +....++.+.-..++-..+ ...+..+...|+...|++...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-----~~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-----GLVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-----chhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence 78899999999999998875211 2233334433333332222 223445556788888888888
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCch
Q 002975 479 EIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVI 556 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~ 556 (861)
.+.+- .+.|...|..-..+|...|.+..|..=+..+.+.. ..+....--+-..+-..|+.+.++...++..+ ||..
T Consensus 180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 87754 24566666677777888888888877666666554 33455555666777788888888888888774 3321
Q ss_pred ----HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCC--hH---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 557 ----SWTSM---------ITGFAKHGFAARALEIFYKMLADGIKPN--GI---TYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 557 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
.|..| +......++|.++++..+..++. .|. .+ .|..+-.++...|.+.+|++...+..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL- 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL- 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-
Confidence 22221 23345678899999988888884 444 23 34444556677889999999888776
Q ss_pred hcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 619 EHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 619 ~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.+.|+ +.++.--.++|.-...+++|+.-|+++.
T Consensus 335 --~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 335 --DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred --hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 67776 7788888889999999999999999874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-05 Score=76.61 Aligned_cols=183 Identities=12% Similarity=0.029 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHHhccC--CC-ch---
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN---HCIYNALISMYSRCANVEAAFQVFKEMED--RN-VI--- 556 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~--- 556 (861)
......+..+...+...|+++.|...++.+++.. +.+ ...+..+...|.+.|++++|...|+++.+ |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998764 222 24667888999999999999999999874 32 22
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 557 SWTSMITGFAKH--------GFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 557 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
++..+..++.+. |+.++|++.|+++.+ ..|+.. ....+..... .... .. .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~~------~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRNR------LA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHHH------HH---------H
Confidence 456666666654 789999999999998 466643 2222211100 0000 00 1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
....+.+.|.+.|++++|+..+++.. ..| ....|..++.++...|+.++|...++.+....|+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12246678899999999999888762 233 3568889999999999999999988888776663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00038 Score=67.31 Aligned_cols=181 Identities=12% Similarity=0.082 Sum_probs=99.1
Q ss_pred HHHHccCCHHHHHHHHHhccC-----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCC
Q 002975 532 SMYSRCANVEAAFQVFKEMED-----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGL 605 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 605 (861)
..+-+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+...-+.-+++. .| -..||..++-.|++..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 456688999999999999983 4778877654322 234455555555555553 44 35799999999999998
Q ss_pred HHHHHHHHHHHHhhcCC-CCChhHHHHHHHHhh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHhCCHH----HHH
Q 002975 606 ISEGWKHFRSMYDEHGI-VQRMEHYACMVDLLG-RSGSLTEALEFIRSMPLSADVLVWRTFLGAC-RVHGDTE----LGK 678 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~-r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~----~a~ 678 (861)
++-|-.++.+-. .... -.+...|+ +++.+. ..-..++|++-++.....--...-..-+..- .++.+-+ .++
T Consensus 326 f~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 888887765322 0000 01223333 334443 3446677766555442100000001111111 1222222 233
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 679 HAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.-+++.+++.- .....-+++|-...++.-+.+.+..-.+
T Consensus 404 ~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 33444444321 1334567788888888888888775543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00042 Score=72.28 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGD 673 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~ 673 (861)
........|.+++|+..++.+... .+-+........+.+.+.|+.++|.+.++++. ..|+ ...|-.+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 333445677788888888777632 22344445556778888888888888887763 5555 5677777788888888
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..+|+..++....-+|+|+..|..|+..|..+|+-.++...+.++
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888888888888888888888777777766666665544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.2e-05 Score=79.63 Aligned_cols=211 Identities=14% Similarity=0.155 Sum_probs=135.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHH
Q 002975 402 LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDAYAKNLNSEKAFELLH 478 (861)
Q Consensus 402 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 478 (861)
|++..|.-.|+..++.. +.+...|.-|...-...++-..|+..+++..+- |....-+|.-.|...|.-.+|+..|+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444332 333344444444444455555555555555332 33445555556666676677777766
Q ss_pred HHhhcCCC--------CCHHHHHHHHHHhhcccchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 479 EIEDTGVG--------TSAYTFASLLSGASSIGAIGKGEQIHARI-IKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 479 ~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
.-.....+ ++..+-.. ........+....++|-.+ ...+..+|+.++..|.-.|--.|+++.|...|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 65432110 00000000 1122222334444555444 4455568889999999999999999999999998
Q ss_pred ccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 550 MED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 550 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
... .|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.++||..+|-...
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 873 3678999999999999999999999999999 899844 55568889999999999999886654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00012 Score=83.59 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhcccchHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc------CCCchHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKG-EQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME------DRNVISWTSMI 562 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li 562 (861)
..+..+=.+.+..|..+++ .+++.++.+ ...+.|.+..+.+-+-+.. -.++..+-.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La 93 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVA 93 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHH
Confidence 3333344455666666554 556655532 2233344433333333222 13577888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG 640 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g 640 (861)
....+.|.+++|..+++...+ +.||.. .+..++..+.+.+.+++|...+++.. ...| +..+...+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999 789854 67788899999999999999999887 4455 4566777888999999
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 641 SLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 641 ~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
++++|.++|++.. ..| +..+|-++..++...|+.+.|..+|+++++...+....|.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999984 344 4779999999999999999999999999998877665554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00037 Score=72.64 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=103.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r 638 (861)
....+...|++++|+..+++++. -.||.. -.......+...++.++|.+.++.+. ...|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHh
Confidence 33445566778888888888777 456544 34445556777888888888888777 34455 3344456678888
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 639 SGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.|+..+|+..++... .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHH
Confidence 888888888887763 455788999999999999998877654 5677889999999999988
Q ss_pred HHHhCC
Q 002975 717 RMKERN 722 (861)
Q Consensus 717 ~m~~~~ 722 (861)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 888754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-05 Score=68.96 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=75.1
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.....+...+...|++++|.+.++... .+.+...|..+...+...|+.+.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445556666777777777777777652 233567888888888888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999998887765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.6e-05 Score=81.47 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=95.3
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
++|-...-..+.+.+.++|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||+..|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455555666666666666666666654 3455566666666666666666666555 35666666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 677 (861)
.-....+++|+++++..... .-..+.....+.++++++.+.++.. ...| -..+|-.+..+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 65555666666666544321 0001111122344445554444432 2222 233444444444444455555
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..+|...+.++|++...+..|+-.|.+.|+-.+|....++.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555555555555555554444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=69.89 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRT 663 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ 663 (861)
..|+......+-.++...|+-+.+..+...... ....+.......+....+.|++.+|...|++.. .++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355432225566677777777777776665432 223344455568888889999999999998873 5678889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+.-+|-+.|+.+.|...+.+++++.|.++.++..|+..|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988877653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00038 Score=79.67 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHHHhcCChhHHH-HHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 460 MVDAYAKNLNSEKAF-ELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 460 li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
+=.+.+.-|..++|- +++.+..+ ++...+.......+..-.....+ ....++..+-.|.......|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 34 LEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcC
Confidence 334556677777774 44444432 23333333333333322222222 34667889999999999999
Q ss_pred CHHHHHHHHHhccC--CC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEMED--RN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
+.++|..+++...+ || ...+..++..+.+.+++++|+..+++.+. ..|+.. ....+..++.+.|.+++|..+|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999998874 54 56778889999999999999999999999 578754 56677788899999999999999
Q ss_pred HHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 002975 615 SMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFL 665 (861)
Q Consensus 615 ~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll 665 (861)
++.. ...-+...+..+..++-..|+.++|...|++.- ..|.+.-|+.++
T Consensus 179 ~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 179 RLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9984 233346788888999999999999999999873 444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=67.74 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=102.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 528 NALISMYSRCANVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 445566666777777777766644 2344455667888888888888888888888732 446778888888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPL-SA-DVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
+.++|..-|.+..+-.+-.| ..++.|.-.|.-.|+++.|..++..... .+ |..+-..|.-+-...|+.+.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888887774333322 3455566666666777777776666532 22 55566666666666677776666554
Q ss_pred H
Q 002975 683 M 683 (861)
Q Consensus 683 ~ 683 (861)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=67.56 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=135.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
-..+...++.++|+.+..++... .|+.. .|..--..+...+ .++++...++.+++.+ +.+..+|+....++.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 33445567778888888887754 34433 3444444445555 5678888888887765 445556666555556666
Q ss_pred CH--HHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC----H
Q 002975 539 NV--EAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA---GL----I 606 (861)
Q Consensus 539 ~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 606 (861)
+. +++..+++.+.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 53 567777776663 56678888888888888888899988888885422 344555554444443 22 2
Q ss_pred HHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc----CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC-------
Q 002975 607 SEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS----GSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG------- 672 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~----g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g------- 672 (861)
++...+...++. +.| +...|+.+..+|... ++..+|.+++.+.. ..| ++.....|+..+....
T Consensus 200 e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 200 DSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred HHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 456666655552 234 445566666666552 34566777777652 333 4556666777765422
Q ss_pred -----------CHHHHHHHHHHHhccCC
Q 002975 673 -----------DTELGKHAAEMILEQDP 689 (861)
Q Consensus 673 -----------~~~~a~~~~~~~~~~~p 689 (861)
..+.|..+++.+-+.+|
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23556666666655555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0004 Score=66.92 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=101.0
Q ss_pred HHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 002975 532 SMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 610 (861)
-.|.+.|+++......+.+..+. ..|...++.++++..+++.++. .| |...|..+...+...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666666655544433322221 0112255566777777776663 34 4556777777777777777777
Q ss_pred HHHHHHHhhcCCCC-ChhHHHHHHHH-hhhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 611 KHFRSMYDEHGIVQ-RMEHYACMVDL-LGRSGS--LTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 611 ~~~~~m~~~~~~~p-~~~~~~~l~~~-~~r~g~--~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
..|++.. .+.| +...+..+..+ +.+.|+ .++|.+++++.. ..| +..++..|...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766 3334 44556666664 356666 477888877763 344 5678888888999999999999999999
Q ss_pred hccCCCCCchHHHH
Q 002975 685 LEQDPQDPAAHILL 698 (861)
Q Consensus 685 ~~~~p~~~~~~~~L 698 (861)
++++|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99999877665544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.3e-06 Score=54.06 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=33.0
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 002975 146 VSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNE 180 (861)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 180 (861)
++||+||.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.8e-06 Score=54.27 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDR 283 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 283 (861)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00065 Score=78.97 Aligned_cols=196 Identities=13% Similarity=0.176 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccCC-C-chHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-GFES---NHCIYNALISMYSRCANVEAAFQVFKEMEDR-N-VISWTSMI 562 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li 562 (861)
...|...+.-..+.+++++|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555566666677777777777666553 2211 2345666666666666667777777777642 2 34566777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh---hHHHHHHHHhhhc
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM---EHYACMVDLLGRS 639 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~l~~~~~r~ 639 (861)
..|.+.+.+++|.++|++|.+. ..-....|...+..+.+...-++|..++.+..+ .-|.. +.....+.+-.+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhhc
Confidence 7777777778888888777775 233445677777777777777777777777662 23433 3344455666777
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 640 GSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 640 g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
|+-+.+..+|+... ..| ....|+.++..-.+||+.+....+|++++++.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88787777777653 222 45678888888888888888888888877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00072 Score=78.10 Aligned_cols=214 Identities=10% Similarity=0.090 Sum_probs=142.1
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHH-HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASL-LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNAL 530 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 530 (861)
.+...|..|+..|...+++++|.++.++..+. .|+...+..+ ...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35567899999999999999999999966643 5555433322 2244455554444333 23
Q ss_pred HHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 531 ISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
++...+..++.-..-+.+.|.+ .+..++-.+..+|-+.|+.++|...|+++++. .|+ ....+.+...++.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHH
Confidence 3333333334333333333332 23346677888888899999999999999884 454 56778888888888 889
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---------------------CHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---------------------DVLVWRTFL 665 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---------------------~~~~~~~ll 665 (861)
+|.+++...... |...+++.++.+++.++. ..| -+.+|.-|-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 998888777632 333345555555544441 122 233444445
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
.-|+..++++.+..+++.+++.+|.|..+..-|+..|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 66788889999999999999999999999888888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=77.52 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g 672 (861)
+++..+...+++++|..+|+++.+. .|+ ....++..+...++-.+|.+++++.- .+.+...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3445555556666666666666522 233 23335555555666666666666652 2335666666777788999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+.+.|..+++++.++.|++..+|..|+.+|...|+|++|.-..+.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999888664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0041 Score=59.79 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=92.9
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISE 608 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 608 (861)
.-...|++.|++++|++.......-+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv------- 180 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV------- 180 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH-------
Confidence 3344566666666666666653222222222 22334445556666666666552 13344444444432
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
....-.+++.+|.-+|++|. ..|++.+.+..+.+|...|++++|+..++.++.
T Consensus 181 -------------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 181 -------------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -------------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 22233344555666666653 456677777777778888888888888888888
Q ss_pred cCCCCCchHHHHHHHHHHcCChhHHHH-HHHHHHh
Q 002975 687 QDPQDPAAHILLSNLYASAGHWEYVAN-IRKRMKE 720 (861)
Q Consensus 687 ~~p~~~~~~~~L~~~y~~~g~~~~a~~-~~~~m~~ 720 (861)
.+++++.+...+.-.--..|+..++.+ ....++.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888877777777888777643 3444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=31.9
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 002975 145 IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCP 178 (861)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (861)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=51.43 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 002975 248 TVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLP 281 (861)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 281 (861)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0009 Score=68.01 Aligned_cols=160 Identities=10% Similarity=-0.030 Sum_probs=115.5
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH-----
Q 002975 556 ISWTSMI-TGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH----- 628 (861)
Q Consensus 556 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----- 628 (861)
.+|..+- .++...|++++|.+.--..++. .++ ......-..++...++.+.|...|++.. .+.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 3444432 4556778888888777666663 332 2222222334455677888888887765 44454321
Q ss_pred --------HHHHHHHhhhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 629 --------YACMVDLLGRSGSLTEALEFIRSMP------LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 629 --------~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+..-.+...+.|++.+|.+.+.+.. .+|++..|.....+....|+.++|+.-.+++++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1122345678999999999998863 34456677777778889999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 695 HILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 695 ~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|..-+++|...++|++|.+-++...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0005 Score=62.11 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--
Q 002975 577 IFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-- 653 (861)
Q Consensus 577 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-- 653 (861)
.|++.++ ..|+. .....+...+...|++++|.+.|+.+.+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45543 345566677778888888888888776322 2355667777888888888888888887762
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
.+.+...|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 334567888888889999999999999999999999886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0031 Score=60.07 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=117.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMI---TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
+|..++-+...+|+.+.|...++.+.+.-+-++.... .-+--.|++++|+++++.+++.. +.|.+++.-=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444555556677778888777776643222222211 12345688899999999988865 4456677666666666
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC---CHHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG---DTELG 677 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~~a 677 (861)
.|+--+|++-+..-.+. +.-|.+.|.-+.++|...|+++.|.-.++++. ..| ++..+..|...+...| |.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777888777776643 45677888888899999999999988888874 444 5666677777766555 78899
Q ss_pred HHHHHHHhccCCCCCchHH
Q 002975 678 KHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~ 696 (861)
...++++++++|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999997654443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=69.84 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL 642 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~ 642 (861)
-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~--------------------- 143 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---S--------------------- 143 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---h---------------------
Confidence 34566777777777777777 555 45666667777777777777776555444 2
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 643 TEALEFIRSMPLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 643 ~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|. ...|..|..++...|++++|+++|+++++++|+|......|..+
T Consensus 144 -----------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 144 -----------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred -----------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 2332 34777788888888888888888888888888887555555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0032 Score=60.00 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIA-VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.|..++-+....|+.+.|...++++...- |.+.-... -..-+...|.+++|.++++.+.++. +-+...|--=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 34455666778899999999999998853 55332111 1122456899999999999998543 3355666666667
Q ss_pred hhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH---
Q 002975 636 LGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY--- 710 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~--- 710 (861)
+-.+|+--+|++-+.+.. +..|...|.-|...|...|+++.|.-.+|+++-+.|.++..+..|+.++...|--+.
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 777888888888776653 667999999999999999999999999999999999999999999999988876443
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
+.+.+....+
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 4445544433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0083 Score=69.66 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHh
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAK 567 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 567 (861)
+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHh
Confidence 33466667777777788888888888777776 66777888888888877 8888888777643 23666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGI 591 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~ 591 (861)
.+++.++.++|.++.. ..|+.+
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccc
Confidence 6677777777777777 455543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=74.98 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=49.2
Q ss_pred hhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 636 LGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
+...|++++|++.++++. ..| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555555555542 222 344555555556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 002975 714 IRKRMKE 720 (861)
Q Consensus 714 ~~~~m~~ 720 (861)
.++...+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00083 Score=71.05 Aligned_cols=125 Identities=10% Similarity=0.135 Sum_probs=93.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAG 604 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 604 (861)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++. .| |......-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33455666667788888888888888777666667778888888888888888888863 44 3445555555677888
Q ss_pred CHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 002975 605 LISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMPLS 655 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~ 655 (861)
+++.|..+.+++. .+.|+ ..+|..|+..|.+.|++++|+-.++.+|..
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888877 45564 457888888888888888888888888743
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.8e-05 Score=57.75 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG-HWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g-~~~~a~~~~~~m~~ 720 (861)
++.+|..++..+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999887654
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=60.57 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.|..++..+ ..++...+...++++.+.. |+. .....+...+...|++++|...|+...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444 2555555555555555532 221 122333444555555555555555555
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-05 Score=48.28 Aligned_cols=31 Identities=39% Similarity=0.653 Sum_probs=27.8
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 002975 146 VSWSSMISSYVNRGKQVDAIHMFVEMLELGF 176 (861)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (861)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=58.28 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=73.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4445667777888888888887753 333 44677778888888899999999999999999998888999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 002975 707 HWEYVANIRKRMKE 720 (861)
Q Consensus 707 ~~~~a~~~~~~m~~ 720 (861)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888876654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.2e-05 Score=61.71 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH
Q 002975 639 SGSLTEALEFIRSMP-LSA---DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
.|++++|+.+++++. ..| +...|-.+..++...|+++.|..++++ .+.+|.+......++.+|.+.|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666666666652 122 455666678888888888888888888 778888878888889999999999999988
Q ss_pred HHH
Q 002975 715 RKR 717 (861)
Q Consensus 715 ~~~ 717 (861)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.5e-05 Score=47.85 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGF 279 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 279 (861)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0026 Score=58.10 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
..+...|++++|...|++.......|+ ......+...+...|++++|+..+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444455555555555555555331111 112223344444444444444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=68.66 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=76.7
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.+-+.+.+++++|+..+.++ .+.| |++.|..-..+|.+.|.++.|++.++.++.++|....+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34556778888888888876 3454 677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=59.04 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=76.0
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
..-+..+|++++|..+|+-+. ..-+..-|..|...|...++++.|+..+..+..++++|+.++...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557888888888887653 333667888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|...+....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999997765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00091 Score=58.71 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=43.5
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYA 703 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~ 703 (861)
.+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...++.+++..|++ +..+..++.+|.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3344444444444444444431 1111 2233344555555555555555555555555543 234555555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 55555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00021 Score=54.79 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=47.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678888899999999999999999999999999999999999999888887754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=70.44 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=26.7
Q ss_pred CCCchHHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCh-HHHHHH
Q 002975 552 DRNVISWTSMITGFAK--H---GFAARALEIFYKMLADGIKPNG-ITYIAV 596 (861)
Q Consensus 552 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 596 (861)
..|...|...+.+... . +...+|+.+|++.++ ..||- ..+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3456666666665432 2 236688888999888 67873 344443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.098 Score=54.25 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=91.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 606 (861)
.+..|.-+...|+...|.++..+..-||-.-|-..+.+|+..|+|++-..+... +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667789999999999988889999999999999999999886664322 22357888899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRV 670 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 670 (861)
.+|..+...+. +..-+.+|.++|++.+|.+.--+.. |...+..+..-|..
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 99998886632 2456788999999999987755432 44444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.014 Score=56.18 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-c
Q 002975 477 LHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-V 555 (861)
Q Consensus 477 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~ 555 (861)
.+.+.......+......-...|...++.++|........ +......=+..+.|..+++-|.+.++.|.+-| -
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3333333344443444444455666666666666554411 11222222344566677788888888887643 3
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 556 ISWTSMITGFAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 556 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
.+.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....+|...|++++|..+++....+.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 455556555543 34577788888887664 57777777777777888888888888877776443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.18 Score=53.76 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC---CHHHHHHHHHhccC---C-CchHHHHHHHHHHhcCChHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA---NVEAAFQVFKEMED---R-NVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
+++..+++..+..-...+..+|..+.+-=-..- ..+.....+++... . -..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 344555555544332334444444332111111 23444445554442 2 2346777888777777789999999
Q ss_pred HHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---C
Q 002975 579 YKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---L 654 (861)
Q Consensus 579 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~ 654 (861)
.+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+++|-.| .--.+.++-+.+-|+-..|..+|++.. .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4556667776555 5788999999988776665544 334567889999999999999999873 2
Q ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHcCChhHHHHHHH
Q 002975 655 SAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----AAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 655 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.|| ..+|..++.--..-||++....+-++.....|.+- ..-.++.+-|.=.+.+..-..-++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 343 46999999999999999999999888887666221 122344555666666554444333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.22 Score=55.28 Aligned_cols=342 Identities=14% Similarity=0.048 Sum_probs=186.2
Q ss_pred HCCCCCCcccHH-----HHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC-
Q 002975 276 LSGFLPDRFTLS-----GVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD- 349 (861)
Q Consensus 276 ~~g~~pd~~t~~-----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~- 349 (861)
.-|+..+..-|. .+++-+...+.+..|.++-..+-..-... ..++.....-+.+..+...-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555544443 34555556667777777766553221122 46666777777765442234445555555555
Q ss_pred -CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC----CChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcc
Q 002975 350 -HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA----PNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDC 424 (861)
Q Consensus 350 -~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~----p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 424 (861)
...++|..+.+--.+.|+ .+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-++...-
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR-~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------ 576 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGR-FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------ 576 (829)
T ss_pred CCCceeHHHHHHHHHhcCc-HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------
Confidence 466788888887778887 88777776542222111 133344555666667777777766666654431
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC-CCeehHHHHHHHHHhcCChhHHHHHHHHHh------hcCCCCCHHHHHHHHH
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFE-KNLVSYNTMVDAYAKNLNSEKAFELLHEIE------DTGVGTSAYTFASLLS 497 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g~~p~~~t~~~ll~ 497 (861)
..-+.+.-..+...|..+|....+ .|..+ +-+.|- .++-.+++..|..-. ..|..|+. .....
T Consensus 577 ---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~ 646 (829)
T KOG2280|consen 577 ---NRSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPAL---KTAAN 646 (829)
T ss_pred ---HHHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhH---HHHHH
Confidence 001111112223334444443322 11111 111122 222222222221100 11223333 33344
Q ss_pred HhhcccchHH---HHH-------HHHHHH-HhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHH
Q 002975 498 GASSIGAIGK---GEQ-------IHARII-KSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFA 566 (861)
Q Consensus 498 a~~~~~~~~~---a~~-------~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 566 (861)
+|++...... +.+ +...+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4444333111 111 111111 12322222333444455667899999999999988888888888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 567 KHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
..+++++-.++-+.+. .++-|.-...+|.+.|+.+||.+++-+.. |.. -.+.+|.+.|++.+|.
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHH
Confidence 9999988666544432 14566668889999999999999886553 221 4678899999999998
Q ss_pred HHHHh
Q 002975 647 EFIRS 651 (861)
Q Consensus 647 ~~~~~ 651 (861)
++--+
T Consensus 791 d~A~~ 795 (829)
T KOG2280|consen 791 DLAAE 795 (829)
T ss_pred HHHHH
Confidence 76543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=57.40 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHH
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGA 667 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~ 667 (861)
..+...+...|++++|...|+.+.....-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ..+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555442221111 12233334555555555555555555442 1222 4566777777
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888876544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=7.9e-05 Score=47.93 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 680 AAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 680 ~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
+++++++++|+|+.+|..|+.+|...|++++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368999999999999999999999999999985
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00034 Score=54.18 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=42.6
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+++.|+..++++++.+|++...+..|+.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3568888888888888888888888888888888888888888888876654
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.36 Score=54.83 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=98.0
Q ss_pred HHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHH--hcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhH
Q 002975 88 CIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLY--SKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVD 163 (861)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 163 (861)
....+++..|.+....+.+..+. ..|...+.++ .+.|+.++|..+++.... ..|..|...+-..|.+.|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34567888898888888776543 3445555554 478999999999988722 2477888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhh
Q 002975 164 AIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVK 228 (861)
Q Consensus 164 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 228 (861)
|..+|++... ..|+..-...+..++.+.+++..-.++-=++-+. ++...+.+-+.++.+..
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 9999999875 4677777778888888887776655554444443 56667776666666665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0039 Score=58.87 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYA 630 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 630 (861)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|..++++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777788888889999998888887433332 34677788888888888888888888773 233 344555
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
.+..+|...|+...+..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666777766665555333221 123677889999999999987 5555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.19 Score=51.26 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=175.7
Q ss_pred cCCHHHHHHHHHhc---CCCCeehHHHHHHH--HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHH
Q 002975 436 SGRMEDARKAFESL---FEKNLVSYNTMVDA--YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQ 510 (861)
Q Consensus 436 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 510 (861)
.|+-..|.+.-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... ...-..-+..|.-...+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45555555555443 22343333333333 23468888888888888742 01111123334444467788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-----CCCch--HHHHHHHHHH---hcCChHHHHHHHHH
Q 002975 511 IHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-----DRNVI--SWTSMITGFA---KHGFAARALEIFYK 580 (861)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~ 580 (861)
+-+..-..- +.-.-.+.++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 877776543 3335667788999999999999999998654 45543 2223333322 23456677776666
Q ss_pred HHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCC
Q 002975 581 MLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM----PLS 655 (861)
Q Consensus 581 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~----~~~ 655 (861)
..+ +.||-+ .-..-..++.+.|++.+|-.+++.+. ...|....... ..+.|.|+. +++-+++. .++
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcC
Confidence 666 788854 34445678899999999999999998 34565554432 234455542 22222221 135
Q ss_pred CC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhCCCccCCcee
Q 002975 656 AD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA-GHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 656 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
|| ....-+...+....|++..|....+.+....|. .++|.+|+++-... |+-.++.....+.. .-..+|.++
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav--~APrdPaW~ 399 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV--KAPRDPAWT 399 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh--cCCCCCccc
Confidence 54 556666777888999999999999999999994 57888999988776 87776655544322 233445444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=61.46 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|..++..+...|++++|+..+++.. ..| .+.+|..+...+...|+.++|+..++++++++|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344455556666677777777766652 222 234788888999999999999999999999999999999999999
Q ss_pred HH-------HcCChhHHHHHHHHH
Q 002975 702 YA-------SAGHWEYVANIRKRM 718 (861)
Q Consensus 702 y~-------~~g~~~~a~~~~~~m 718 (861)
|. ..|++++|...++..
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 88 788888666555533
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=61.01 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-L---SAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
+..+...+.+.|++++|...+++.. . .++ ...|..+...+...|+++.|+..++++++..|++...+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444445555555555555555441 1 111 3577788888899999999999999999999999999999999998
Q ss_pred HcCC
Q 002975 704 SAGH 707 (861)
Q Consensus 704 ~~g~ 707 (861)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 8877
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0025 Score=67.87 Aligned_cols=76 Identities=18% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|+++.|+..++++++++|+++.....+..+....
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 333344444444444444444431 233 4567777888888889999999999999999999888887776665444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0015 Score=66.23 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=142.6
Q ss_pred HHhcCChhHHHHHHHHHhhcCC---CCCHHHHHHHHHHhhcccchHHHHHHHHHH--HHh--CCC-CchhHHHHHHHHHH
Q 002975 464 YAKNLNSEKAFELLHEIEDTGV---GTSAYTFASLLSGASSIGAIGKGEQIHARI--IKS--GFE-SNHCIYNALISMYS 535 (861)
Q Consensus 464 ~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~li~~y~ 535 (861)
+++.|+....+.+|+...+.|- ..=...|..|..+|.-++++++|.++|..= +.. |-+ -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 4555666666666666555441 111233444555566666666666665421 111 100 11222333444444
Q ss_pred ccCCHHHHHHHHHhcc-------C--CCchHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH---
Q 002975 536 RCANVEAAFQVFKEME-------D--RNVISWTSMITGFAKHGF--------------------AARALEIFYKMLA--- 583 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~--- 583 (861)
-.|.+++|.-...+-. + -....+-.+...|...|+ .+.|.++|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554332211 0 011233334444443332 2344455544322
Q ss_pred -cCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----
Q 002975 584 -DGIK-PNGITYIAVLSACSHAGLISEGWKHFRSMY---DEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP---- 653 (861)
Q Consensus 584 -~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---- 653 (861)
.|-. .....|.+|...|.-.|+++.|+..++.=. +++|-.. ....++.+.+.+.-.|+++.|.+.++...
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1211 112356677777777888888887765422 2444333 23467778888888888888888887641
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----CC--CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 ----LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ----DP--QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 ----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
....+..-.+|.++|....+++.|+....+=+.+ +. ....++..|++.|...|..+.|....++-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1123445567888888888888888887765542 22 3456788999999999999988877665443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=52.90 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=78.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 601 (861)
..-.+...+...|++++|.++|+-+. + .+..-|-.|..++-..|++++|+..|..... +.|| ...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 33445556678899999999999776 3 3567888899999999999999999999999 4565 678888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQ 624 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p 624 (861)
..|+.+.|++.|+..+...+-.|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999998885554444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=52.12 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...+...++++.|..+++++++++|+++..+...+.+|...|+|++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999998877653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0042 Score=51.36 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|.++|+..... .|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~------------ 65 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DP------------ 65 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC------------
Confidence 455666666677777777777776663 333 344555555566666666666666555421 11
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 637 GRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
.+..+|..+...+...|+.+.|...++++++..|
T Consensus 66 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 66 -------------------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 1223455555555556666666666666665555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0079 Score=59.58 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh-C--CHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVH-G--DTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
|.+-|--|...|.+.|+++.|..-|.+.. ..+++.++..+..++... | +..++..+++++++++|.|..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44555555555555555555555555542 334566777777764333 2 678899999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 700 NLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 700 ~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
-.+...|++.+|...++.|.+....
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999885543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=53.72 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC------CCCCHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP------LSADVL 659 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~~~ 659 (861)
..|+...-..|..+....|+..||...|++.. .--...|....-.+..+...-++..+|...+++.. ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 34444444445555555555555555555544 21222344444444455555555555555555431 12222
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHH
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
.-.+..++...|..+.|+..++.++...| ++..-...+..++++||.+++..
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 22334445555555555555555555555 23333444455555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00076 Score=51.63 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=48.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+...+.+.|++++|.+.|++.. ..| +...|..+..++...|+++.|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3456778888888888888863 445 566888999999999999999999999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0087 Score=56.28 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|++++|+..++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666677777777888888888877776422221 2366677777777777777777777766
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.016 Score=59.39 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSA-CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 367778888888888888888888887542 2233445444444 3335666669999998886653 35566778888
Q ss_pred HhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 635 LLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
.+.+.|+.+.|..+|++.. .-|. ..+|...+.--..+|+.+....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8899999999999998863 2222 3599999999999999999999999999998875433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.46 Score=49.35 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
+.+..+.-+...|+...|.++-.+..-+|-.-|-..+.+|+..+++++-.++-.. +-.++-|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455566677777777777777777777777778888888887766654322 2234666777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
..+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 77776665541 12455677777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=59.09 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 002975 461 VDAYAKNLNSEKAFELLHEI 480 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m 480 (861)
...|-..|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44455555555555555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00082 Score=52.01 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=42.3
Q ss_pred hcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 638 RSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..|++++|+++++++. . +.+..++..+..+|...|+++.|+..++++.+.+|+++..+..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4566677777766652 2 3356666777777777788888888888888888877666655554
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.14 Score=55.35 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 609 (861)
..+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 345566677777765543 334444555554444322 2233444444444555666677
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC
Q 002975 610 WKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD 657 (861)
Q Consensus 610 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~ 657 (861)
-++|..|-. ...++++....|+++||..+-++.| ..||
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 777777652 2457788888888888888888876 4444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.06 Score=48.93 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchH
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP---LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAH 695 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 695 (861)
.+.|++.+--.|...+.+.|+..||...|++.. ...|+...-.+..+....++...|...++++.+-+|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344444444445555555555555555554431 3334444444555555555555555555555555443 34444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 002975 696 ILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 696 ~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
.+++..|...|++.+|...++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHH
Confidence 44555555555555544444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=56.33 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHh
Q 002975 387 NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAK 466 (861)
Q Consensus 387 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 466 (861)
+..+...+..-+.+...+..|-++|..+-+. ..++++....+++++|..+-++.++--...|-.-..-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3344444445555666777777887776443 3577788888899999888888876433344444455555
Q ss_pred cCChhHHHHH
Q 002975 467 NLNSEKAFEL 476 (861)
Q Consensus 467 ~g~~~~A~~l 476 (861)
..+++||.+.
T Consensus 817 ~DrFeEAqkA 826 (1081)
T KOG1538|consen 817 NDRFEEAQKA 826 (1081)
T ss_pred hhhHHHHHHH
Confidence 6666666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.072 Score=54.89 Aligned_cols=125 Identities=12% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----ChH-
Q 002975 528 NALISMYSRC-ANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-----NGI- 591 (861)
Q Consensus 528 ~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~- 591 (861)
..+..+|... |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344556666 677777777766542 11 1244556677888888888888888877643221 211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCCh--hHHHHHHHHhh--hcCCHHHHHHHHHhC
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEH-GIVQRM--EHYACMVDLLG--RSGSLTEALEFIRSM 652 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~--~~~~~l~~~~~--r~g~~~eA~~~~~~~ 652 (861)
.|...+-++...|+...|.+.|+...... ++..+. .....|++++- ....+++|+.-|+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 23344445666788888888888766221 222222 23445555553 244577777777766
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.019 Score=61.18 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHH
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKS--GFESNHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWT 559 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 559 (861)
+.+...+..++..+.+..+++.+..++-+.... ....-..+..++|..|.+.|..+++..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555554444433 1112223334555555555555555555543322 4555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH 602 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 602 (861)
.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0025 Score=49.39 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCC
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG-DTELGKHAAEMILEQDP 689 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 689 (861)
...|..+...+.+.|++++|+..|++.. ..| ++.+|..+..++...| +.+.|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666667777777777777776652 334 5678888889999999 79999999999999988
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=51.04 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHH
Q 002975 568 HGFAARALEIFYKMLADGIK-PNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA 645 (861)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+. ...-.+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888884321 2344555577888888888888888876 2 222222 2233346677777778777
Q ss_pred HHHHHh
Q 002975 646 LEFIRS 651 (861)
Q Consensus 646 ~~~~~~ 651 (861)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.097 Score=50.39 Aligned_cols=165 Identities=13% Similarity=0.056 Sum_probs=115.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC--Ce--------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHH
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFEK--NL--------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASL 495 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 495 (861)
+++|...+.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++++.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444455555555443221 11 23466777777788999999999999988777788888889
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHH-----HHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHh
Q 002975 496 LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNA-----LISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAK 567 (861)
Q Consensus 496 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 567 (861)
.+.-.+.|+.+.|...++...+..-..+....+. ....|.-.+++.+|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999998876533344333333 34456667888889999988874 455666665556667
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
.|+..+|++..+.|.+ ..|...+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccch
Confidence 7899999999999998 4555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.093 Score=52.38 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe---eh---HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc--c
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL---VS---YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS--I 502 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~ 502 (861)
..+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334557788888888877744322 11 223456677788888888888887765433223333333333321 0
Q ss_pred c---------------c---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHH
Q 002975 503 G---------------A---IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITG 564 (861)
Q Consensus 503 ~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 564 (861)
+ + ...|...++ .+++-|-.+.-..+|..-+..+...-...--.+..-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112222222 233333333333444443333321111111133455
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLAD--GIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
|.+.|.+.-|+.-|+.+++. +.+........+..++.+.|..++|..+...+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66777777777777777763 11122345556667777777777776665443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=56.67 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG-ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34555555555555555555555555322 1112222222222 12234445566666666554 355566666666666
Q ss_pred HccCCHHHHHHHHHhccC--C----CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED--R----NVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.+.|+.+.|..+|++... + -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777766653 1 123666666666666776666666666666
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0053 Score=64.61 Aligned_cols=66 Identities=12% Similarity=-0.099 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA---HILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.+...|+.+..++...|++++|+..++++++++|++..+ |+.++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357788899999999999999999999999999988854 889999999999999999888877664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.15 Score=53.35 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=94.3
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCC---Cch----HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDR---NVI----SWTSMITGFAK---HGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.++-.|-...+++.-.++++.+... +.. .-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777642 111 11122334445 6778888888877665555666667766655
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH----HHHH---H-----hCCCCC-
Q 002975 599 ACSH---------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA----LEFI---R-----SMPLSA- 656 (861)
Q Consensus 599 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA----~~~~---~-----~~~~~p- 656 (861)
.|-. ....++|...|.+. +.+.|+..+--.++.++..+|...+. .++- . +-...+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22366777776643 34555544333344444444432222 2221 1 111233
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 657 -DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 657 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
|--.+.+++.++...||.+.|.+++++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33344679999999999999999999999998865
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0021 Score=44.37 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.01 Score=59.70 Aligned_cols=92 Identities=9% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSN 700 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~ 700 (861)
|..-++++.+.|++++|...|+... ..|+ +..+.-++.++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444445455566666666665542 2232 2355556777777788888888888888777764 345556677
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002975 701 LYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77788888888887776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.064 Score=59.83 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 616 (861)
|.++...+...|++++|...+++.++ +.|+...|..+...+...|+.++|...+++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333334444444444444444 2334444444444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.041 Score=47.64 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLG 637 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~ 637 (861)
+..++-..|+.++|+.+|++.++.|.... ...+..+.+++...|++++|..+++.....+.-.+.. .....+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999887665 3467788889999999999999999887554221112 22223345777
Q ss_pred hcCCHHHHHHHHHhC
Q 002975 638 RSGSLTEALEFIRSM 652 (861)
Q Consensus 638 r~g~~~eA~~~~~~~ 652 (861)
..|+.+||++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999998876543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.026 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCC-CCCHHHHHHHHHHhhccc--------chHHHHHHHHHHHHhCCCCchhHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGV-GTSAYTFASLLSGASSIG--------AIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999886542 345567788889999999999999
Q ss_pred HHHHHHHHc
Q 002975 528 NALISMYSR 536 (861)
Q Consensus 528 ~~li~~y~~ 536 (861)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.031 Score=52.65 Aligned_cols=117 Identities=14% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHhhc-----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHH
Q 002975 486 GTSAYTFASLLSGASS-----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTS 560 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 560 (861)
..|..+|..++..+.+ .|.++-....+.+|.+-|+..|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 3455555555555533 35666667777888888999999999999988765 3332 11122211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL-ISEGWKHFRSMY 617 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~ 617 (861)
-. -...+.+-|++++++|...|+-||..|+..|+..+.+.+. +.+.+++..-|.
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 1224567789999999999999999999999999876654 334444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=60.23 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCe
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNK 737 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 737 (861)
..++..|...|.+.+++..|+....++++++|+|.-+.+.-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 346677778888999999999999999999999999999999999999999999999999876
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 738 VHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 738 ~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
..|.++.|...|..+.+++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 357888899999888888775
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=60.05 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=75.3
Q ss_pred CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc--CCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCeeh
Q 002975 383 QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR--GRALDDCVGNSLISMYARSGRMEDARKAFESLFE----KNLVS 456 (861)
Q Consensus 383 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 456 (861)
+.+.+...+..++..+....+++.++.++-..... ....-..+..++|..|.+.|..+++..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777777788887777778877777776654 2222334445666666666666666666654322 45566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcc
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSI 502 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 502 (861)
+|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666555666665555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.13 Score=51.41 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=109.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhccC--CCc-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHH
Q 002975 527 YNALISMYSRCANVEAAFQVFKEMED--RNV-IS---WTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLS 598 (861)
Q Consensus 527 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~ 598 (861)
.-.....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++.++ ..|+ .+-+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHH
Confidence 33345556678999999999998874 332 11 23456777889999999999999988 4454 234444444
Q ss_pred HHHh--cC---------------C---HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH
Q 002975 599 ACSH--AG---------------L---ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADV 658 (861)
Q Consensus 599 a~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~ 658 (861)
+.++ .+ + ..+|...|+.++ +.|-...-..+|...+..+. +.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~ 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DR 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HH
Confidence 4332 11 1 123334444444 33333334455544443331 11
Q ss_pred HHH--HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVW--RTFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..- -....-|.+.|.+.-|..-++.+++-.|+.+ .+...+.+.|.+.|..++|.++...+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 111 1234457888999999999999999888754 5667888999999999999998876643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=50.31 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=57.4
Q ss_pred HhhhcCCHHHHHHHHHhCC---CCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHcC
Q 002975 635 LLGRSGSLTEALEFIRSMP---LSA-D-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ---DPAAHILLSNLYASAG 706 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~---~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~y~~~g 706 (861)
++-..|+.++|+.++++.. ... + ...+-.+.++++..|++++|+.++++.++-.|+ +....+.++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3344455555555555431 111 1 234556778888889999999999988888887 6677778888899999
Q ss_pred ChhHHHHHHHH
Q 002975 707 HWEYVANIRKR 717 (861)
Q Consensus 707 ~~~~a~~~~~~ 717 (861)
+++||.+..-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 99998876543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.055 Score=54.43 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
|...+..+.+.|++++|+..|+.+++ ..|+. ..+.-+..++...|++++|...|+.+.+.+.-.|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-------- 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-------- 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------
Confidence 33333333445667777777777766 34442 34455666666666666666666666533321111
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 634 DLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
....|..++..+...|+.+.|...++++++..|++..
T Consensus 216 -----------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 216 -----------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred -----------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 2334445566677888899999999999998887643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.28 Score=53.71 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=101.4
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHH
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR-----NVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
-|.+++|++++-.+-+.. ..|.++.+.|++-...++++.-... -...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665554432 2356677777777777776654321 12567777777777777777777
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 002975 577 IFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA 656 (861)
Q Consensus 577 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p 656 (861)
+|..-... ...+.++.+..++++-..+-+.+ +-+......|.+++.+.|.-++|.+.+-+-. .|
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc
Confidence 76543221 12445555555555544443333 2333444556677777777777776665543 22
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH-------------hccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMI-------------LEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
. +.+.+|...++..+|.+.+++. -++-.+ ..+..-...+.++|++-+|.++..+|.++..
T Consensus 882 k-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~--~~~~eaIe~~Rka~~~~daarll~qmae~e~ 954 (1189)
T KOG2041|consen 882 K-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD--ANHMEAIEKDRKAGRHLDAARLLSQMAEREQ 954 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh--cchHHHHHHhhhcccchhHHHHHHHHhHHHh
Confidence 1 2233444444444444333321 111000 0111223356667777777777777755443
Q ss_pred cc
Q 002975 724 IK 725 (861)
Q Consensus 724 ~~ 725 (861)
+|
T Consensus 955 ~K 956 (1189)
T KOG2041|consen 955 EK 956 (1189)
T ss_pred hc
Confidence 33
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.3 Score=45.47 Aligned_cols=266 Identities=15% Similarity=0.102 Sum_probs=162.8
Q ss_pred CCCChhhHHHHHHHhc--ccCChHHHHHHHHHHHHcCCCCCcch--hhHHHHHHHHcCCHHHHHHHHHhcCCC--C-eeh
Q 002975 384 VAPNHFTFASVLKACG--NLLDSNVAEQVYTHAVKRGRALDDCV--GNSLISMYARSGRMEDARKAFESLFEK--N-LVS 456 (861)
Q Consensus 384 ~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~ 456 (861)
+.-|..-...+|.+-. -.|+.+.|++-|+.|... |.... ...|.----+.|..+.|..+-+..... . ...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 4456666666665543 457888888888887642 11110 111222234578888888877776433 2 246
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcC-CCCCHH--HHHHHHHHhhc---ccchHHHHHHHHHHHHhCCCCchhH-HHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTG-VGTSAY--TFASLLSGASS---IGAIGKGEQIHARIIKSGFESNHCI-YNA 529 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 529 (861)
|.+.+...+..|+++.|+++++.-.... +.+|.. .-..|+.+-+. ..+...|+..-.+..+ +.||..- ...
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 8888999999999999999998876533 455543 22233333221 1234455555544444 3444322 223
Q ss_pred HHHHHHccCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-hHHHHHHHHHHHhcCC
Q 002975 530 LISMYSRCANVEAAFQVFKEMED--RNVISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPN-GITYIAVLSACSHAGL 605 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~t~~~ll~a~~~~g~ 605 (861)
-...|.+.|++.++-.+++.+-+ |.+..| .+..+.+.|+ .++.-+++..+. .++|| ..+...+..+-...|+
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 34678899999999999998874 333333 2333344554 455445444332 36776 4567778888888899
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh-cCCHHHHHHHHHhCCCCCCHHHH
Q 002975 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR-SGSLTEALEFIRSMPLSADVLVW 661 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r-~g~~~eA~~~~~~~~~~p~~~~~ 661 (861)
+..|..--+... ...|....|..|.|.-.- .|+-.++...+-+....|....|
T Consensus 345 ~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 345 FSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred hHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 888877655544 667888888888887644 48888888888776433333334
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.26 Score=47.55 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCChhHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHG----IVQRMEHYACM 632 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 632 (861)
.-+.++..+.-+|.+.-.+.++++.++...+-++.....|.+.-.+.|+++.|..+|+...+..+ +.-..-+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566777777888888899999999965455677788888888999999999999997764332 33333333444
Q ss_pred HHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMPL-SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
...|.-++++.+|...+.+.+. .| |+...|.-.-...-.|+...|++..+.+++..|.....-..+.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 4567778889999999988762 22 34444443333344688899999999999999876554433333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.052 Score=49.57 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=71.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
....|+.+.+...++.+..-+.-.+ +... ..........++++ -..+...++..+...|+.+.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777664432211 1110 22233333333333 123556677888899999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..+++++..+|-|...|..|..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0097 Score=46.69 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
..|.+.+++++|.+.++.+. ..| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888873 444 566888888889999999999999999999999887665543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.033 Score=52.46 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=70.7
Q ss_pred HHHHHhc--cCCCchHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------------
Q 002975 544 FQVFKEM--EDRNVISWTSMITGFAK-----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA------------- 603 (861)
Q Consensus 544 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 603 (861)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34566666666666654 355566666677777778877888888877765432
Q ss_pred ---CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 604 ---GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 604 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.+-|++++++|. .+|+.||.+++..+++.+|+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23467899999998 89999999999999999998875
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.6 Score=45.33 Aligned_cols=227 Identities=13% Similarity=0.050 Sum_probs=114.4
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHH--HhhcccchHHHHHHHHHHHHhCCCCchhH-------------H
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLS--GASSIGAIGKGEQIHARIIKSGFESNHCI-------------Y 527 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~ 527 (861)
++.-.|++++|.+.-....+.. .. ..+..+++ ++.-.++.+.+..-+.+.++.+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 4455667777666655554322 11 11222222 2233455566666666555443 22111 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-------RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVLSA 599 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 599 (861)
..=.+...+.|.+..|.+.|.+... ++...|-....+..+.|+.++|+.--++..+ +.|.. ..+..-..+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHH
Confidence 1122344567777777777776653 2333455555556677777777776666655 44432 234444445
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+...+.|++|.+.|+...+. ..+..+-.. +.+|..-+++.. -.-|-.+++.-+...+.+....
T Consensus 331 ~l~le~~e~AV~d~~~a~q~---~~s~e~r~~----------l~~A~~aLkkSk----Rkd~ykilGi~~~as~~eikka 393 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL---EKDCEIRRT----------LREAQLALKKSK----RKDWYKILGISRNASDDEIKKA 393 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh---ccccchHHH----------HHHHHHHHHHhh----hhhHHHHhhhhhhcccchhhhH
Confidence 55566777777777665521 111111111 223333333321 2234555555555555565555
Q ss_pred HHHHHhccCCCCC-ch-------HHHHHHHHHHcCChhHHHH
Q 002975 680 AAEMILEQDPQDP-AA-------HILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 680 ~~~~~~~~~p~~~-~~-------~~~L~~~y~~~g~~~~a~~ 713 (861)
.-+.++...|+-. .. +...++.|.-.++.++..+
T Consensus 394 yrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 394 YRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 5566777777632 22 3355666666666666544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.029 Score=47.56 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=73.4
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHcCC
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----AAHILLSNLYASAGH 707 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~y~~~g~ 707 (861)
-++...|++++|++.|.+.. .+..+..||.-..+++..|+.+.|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 36778899999999988763 345678999999999999999999999999999854433 357888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 002975 708 WEYVANIRKRMKERN 722 (861)
Q Consensus 708 ~~~a~~~~~~m~~~~ 722 (861)
-++|..-|+..-+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999888776644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.083 Score=44.03 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCCChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGI-KPNGITYIAVLSACSHAG--------LISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
-...|..+...|++...-.+|+.+...|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|. ..+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHH
Confidence 34456666667999999999999999999 889999999998876542 2445677888887 6678888888
Q ss_pred HHHHHHHhhh
Q 002975 629 YACMVDLLGR 638 (861)
Q Consensus 629 ~~~l~~~~~r 638 (861)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.16 Score=52.14 Aligned_cols=304 Identities=15% Similarity=0.095 Sum_probs=151.3
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCC---CChhhHHHHHHHhcccCChHHHHHHHHHHHH----cCCC-CCcchhhHHHHHH
Q 002975 362 YVQSGGRDKEAVKLFSDMIQGQVA---PNHFTFASVLKACGNLLDSNVAEQVYTHAVK----RGRA-LDDCVGNSLISMY 433 (861)
Q Consensus 362 ~~~~g~~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~li~~~ 433 (861)
+++.|+ ....+.+|+..++.|.. .=+..|..+-++|.-.+++++|.+.|..=+- .|-. -.......|.+.+
T Consensus 27 Lck~gd-craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGD-CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccc-hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566777 88888888888887642 2234466666777778888888888754221 1110 0111222234444
Q ss_pred HHcCCHHHHHHHHHhcCC-------C--CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 434 ARSGRMEDARKAFESLFE-------K--NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
--.|.+++|.-.-.+-.. + ....+..+...|...|+.-.-. --.+.|-.++.++- .
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~-----------a 170 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTS-----------A 170 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHH-----------H
Confidence 445666666544332210 0 1112333444444333211000 00011212222210 1
Q ss_pred hHHHHHHHH----HHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHHhcc-------C--CCchHHHHHHHHHHhcCC
Q 002975 505 IGKGEQIHA----RIIKSGFE-SNHCIYNALISMYSRCANVEAAFQVFKEME-------D--RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 505 ~~~a~~~~~----~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~ 570 (861)
++.|.++|. .+.+.|-. .-...|..|.+.|--.|+++.|+..-+.-. + .....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 122222221 11111100 112345566666666777777766554322 1 122456677777888888
Q ss_pred hHHHHHHHHHHHH----cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 571 AARALEIFYKMLA----DGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 571 ~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
++.|++.|+.-.. .|-+. ...+..+|..+|.-...++.|+.++.+-.. -|
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa-------------------------IA 305 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA-------------------------IA 305 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------------------HH
Confidence 8888887776543 22111 123455566677666677777777654331 11
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCC-CCchHHHHHHHHHHcCChh
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ-----DPQ-DPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~~~~~L~~~y~~~g~~~ 709 (861)
.++=+.+. ....+-+|..++...|+.+.|...+++.+++ +|. ...+.+.|++.-...|.-+
T Consensus 306 qeL~DriG---e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 306 QELEDRIG---ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHhhh---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 11111111 2234457777777777777777777766652 222 2345556677666666544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.8 Score=42.57 Aligned_cols=193 Identities=19% Similarity=0.147 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhcc-----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEME-----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
...+......+...+.+..+...+.... ......+..+...+...+++.+++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4556666677777777777777776653 23344555666666777777888888887777433331 22222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHH
Q 002975 599 -ACSHAGLISEGWKHFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD--VLVWRTFLGACRV 670 (861)
Q Consensus 599 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~--~~~~~~ll~~~~~ 670 (861)
++...|.++++...+..... ..| ....+......+...++.++|...+.+.. ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887742 222 23333344444667788888888887763 2333 5677778888888
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 671 HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 671 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999988888666777777777777778888877766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.9 Score=45.33 Aligned_cols=273 Identities=11% Similarity=0.130 Sum_probs=132.0
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHhcccCChHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPN----HFTFASVLKACGNLLDSNVAEQVYT 412 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~ 412 (861)
+++|++++-++..+|.. |..+.+-|+ +-...++++. .|-..| ...++.+-..++....++.|.+.+.
T Consensus 750 feeaek~yld~drrDLA-----ielr~klgD-wfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDLA-----IELRKKLGD-WFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhhhh-----HHHHHhhhh-HHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777666542 333444444 4444444322 111111 2345555556666666666666665
Q ss_pred HHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHH
Q 002975 413 HAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTF 492 (861)
Q Consensus 413 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 492 (861)
.-... ...+++|.+..++++-+.+-+.+++. ....-.|.+.+...|..++|.+.|-+-.. |
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P----- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----
Confidence 43221 23555666666666655555555443 33445566667777777776665543221 1
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC---chHH
Q 002975 493 ASLLSGASSIGAIGKGEQIHARIIKS-----------GFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN---VISW 558 (861)
Q Consensus 493 ~~ll~a~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~ 558 (861)
...+.+|..+.++.+|.++-+...-. .+-.+..+ .--|.++.+.|+.=+|.+++.+|.++. -+.|
T Consensus 882 kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 13345666666666665554322100 00000011 123566777777777777776665321 1112
Q ss_pred HHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 559 TSMITGFA----KHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 559 ~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
--+=..|. -..+..++++-.++....|...|... +...|...++-++.+.... -....|+-.|..
T Consensus 961 lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQ 1029 (1189)
T KOG2041|consen 961 LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQ 1029 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHH
Confidence 21111111 12234445555555555554333221 1223334444444432220 112334444555
Q ss_pred HhhhcCCHHHHHHHH
Q 002975 635 LLGRSGSLTEALEFI 649 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~ 649 (861)
-..+.|..+.|+..-
T Consensus 1030 rql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1030 RQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHhchHHHHHHHH
Confidence 566788888887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.017 Score=45.97 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc----CCC---CCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQ----DPQ---DPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
+++.+...++..|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666677777777777777776653 111 24567788888888999888888877653
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.21 Score=50.47 Aligned_cols=222 Identities=16% Similarity=0.082 Sum_probs=97.2
Q ss_pred HhcCChhHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHcc
Q 002975 465 AKNLNSEKAFELLHEIEDTG--VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS--GFESN---HCIYNALISMYSRC 537 (861)
Q Consensus 465 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~y~~~ 537 (861)
.+..+.++|+..+.+-...- ..---.+|..+..+.++.|..+++...-.-.+.. ..+.. ...|-.|...+-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777666654321 1112235555556666666665554432221111 11111 12223333344443
Q ss_pred CCHHHHHHHHHhccC-C------C-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcC
Q 002975 538 ANVEAAFQVFKEMED-R------N-VISWTSMITGFAKHGFAARALEIFYKMLADGIKP-N----GITYIAVLSACSHAG 604 (861)
Q Consensus 538 g~~~~A~~~~~~~~~-~------~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g 604 (861)
-++.+++.+-+.-.. | + -...-+|..++.-.+.++++++.|+...+.--.. | -..+..|.+-|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 444444443332210 1 0 0122234445555555666666666655421111 1 224556666666666
Q ss_pred CHHHHHHHHHHHH---hhcCCCCChhHHHHH-----HHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHH
Q 002975 605 LISEGWKHFRSMY---DEHGIVQRMEHYACM-----VDLLGRSGSLTEALEFIRSM-------PLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 605 ~~~~a~~~~~~m~---~~~~~~p~~~~~~~l-----~~~~~r~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~ 668 (861)
++++|.-+..... ..+++..-..-|.++ ...|...|.+-+|.+.-++. ...+ .+.....+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 6666655444332 233333322223322 22444455555444444432 1111 123344455556
Q ss_pred HHhCCHHHHHHHHHHHhc
Q 002975 669 RVHGDTELGKHAAEMILE 686 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~ 686 (861)
+..|+.|.|..-|+++..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 666666666555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=38.28 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=78.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.-.|..++..++..+...+. +..-++-++--...+-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34577777788877776642 11122222221112222333344444443322222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+-.+. -+....+-.+++....|..+.-.+++..+++-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444431 122334556777889999999999999999877778899999999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.025 Score=45.05 Aligned_cols=30 Identities=13% Similarity=-0.028 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
..++..+...+...|+.+.|+..+++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666677777777777777766553
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.95 Score=48.36 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSAD--VLVWRTFLGA 667 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~ 667 (861)
+-..+..++-+.|+.+||.+.|++|.+++...........|+..|...+.+.++..++.+.. .-|+ ...|++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33457777889999999999999998666544455567779999999999999999999875 1233 3466665545
Q ss_pred HHHhCCH---------------HHHHHHHHHHhccCCCCCch
Q 002975 668 CRVHGDT---------------ELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 668 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~ 694 (861)
.+..++. ..|.++..++++.||.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 5555541 23567889999999987644
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.8 Score=42.55 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=59.9
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 646 LEFIRSMPLSA----DVLVWRTFLGA--CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 646 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++++....| +..+-|.|..| ...+|++.++.....-+.++.| ++.+|.++|-+.....+++||...+..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44555555444 44566777776 6789999999999999999999 9999999999999999999999998855
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.34 Score=44.14 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhcCCCCChhHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY----DEHGIVQRMEHY 629 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 629 (861)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445567778889999999999999998 455 57789999999999999999999988774 367888887643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.2 Score=41.41 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=88.5
Q ss_pred HHHHccCCHHHHHHHHHhccC--CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhc
Q 002975 532 SMYSRCANVEAAFQVFKEMED--RN----VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHA 603 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~ 603 (861)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|+..|++.++. -|+. .-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344566777777777777663 22 124445667777778888888888887763 3431 2222222222211
Q ss_pred -------------CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHH
Q 002975 604 -------------GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVW--RTFLGAC 668 (861)
Q Consensus 604 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~ 668 (861)
+...+|...|+.+.+. |-......+|...+..+. +...- -.+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 1123444444444433 333333444444333321 00111 1234557
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHcCChhHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPA---AHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~y~~~g~~~~a~~ 713 (861)
.+.|.+.-|..-++.+++..|+... +...|...|.+.|..+.+..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8889999999999999999998654 45678889999999885443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=42.96 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666666666666666666666666655555544444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.27 Score=52.24 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=56.1
Q ss_pred CCCCCCcchHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCcchhHHHHHHHHHc
Q 002975 38 AQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDL--DTYSLLLKSCIRSRNFHLGKLVHSLLTRS 107 (861)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (861)
..|..+..+.+....+...|++++|+..|++..+.+..... .+|..+..++...|++++|...+..+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555556677777999999999999999998887533221 45888999999999999999999998875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.87 Score=48.61 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=109.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH--
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT-- 643 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~-- 643 (861)
-+..+.+.-+++-++.++ +.||-.+-..++ +-.....+.++.++|++..+... ..|++....+
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~ 243 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHH 243 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhcc
Confidence 345566777777777777 678755433332 33345568888888888763210 0111111010
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 644 -EALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 644 -eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...+.+..-...+-..+-..|...+++.|+.++|++.++.+++..|. +-+.+..|.+.+-..+++.|+..+..+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 01111111112223344455777888999999999999999987775 456788999999999999999999888765
Q ss_pred CCCccCCceeEEEeCCeEEEE-EeCCCCCCCh-------HHHHHHHHHHHHHHHhcCcccC
Q 002975 721 RNLIKEAGCSWIEADNKVHKF-HVGETSHPKT-------LEIYAELDQLALKIKEFGYLPD 773 (861)
Q Consensus 721 ~~~~~~~~~s~i~~~~~~~~f-~~~~~~~~~~-------~~i~~~l~~l~~~~~~~g~~~~ 773 (861)
..+.|....+|... .-.| ..||+..|+. ......++-+.+.++.--++|+
T Consensus 324 i~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 324 ISLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 55555554443210 0001 1233332321 1222345566667776677775
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.23 Score=51.41 Aligned_cols=137 Identities=15% Similarity=0.018 Sum_probs=93.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.+.|.+.|++..|...|++.... -... ..-..++...... .....+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 56778888888888888887652 1100 0011122211111 112234556667778888
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH-HHHHHHH
Q 002975 642 LTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV-ANIRKRM 718 (861)
Q Consensus 642 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a-~~~~~~m 718 (861)
+.+|++.-++.. .++|+-..--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777652 3445556666678899999999999999999999999999999998888877777665 6778877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.044 Score=35.17 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999964
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.1 Score=47.78 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHH-cCCCCCh-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh
Q 002975 571 AARALEIFYKMLA-DGIKPNG-ITYIAVLSACSH---------AGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR 638 (861)
Q Consensus 571 ~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r 638 (861)
.+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.++-+... .+.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4567777877772 1256663 334333332211 123445555555555 3344 34455555666667
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH--HHHHHHHHcCChhHHHHH
Q 002975 639 SGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI--LLSNLYASAGHWEYVANI 714 (861)
Q Consensus 639 ~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~L~~~y~~~g~~~~a~~~ 714 (861)
.|+++.|..+|++.. ..|| +.+|......+.-.|+.+.|....+++++++|.-..+-+ ...++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 777888888888863 5665 567877888888889999999999999999998665544 3334565544 5566665
Q ss_pred HH
Q 002975 715 RK 716 (861)
Q Consensus 715 ~~ 716 (861)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.5 Score=42.52 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHcCCHHHHHHHHHhcCC--CC----eehHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 002975 433 YARSGRMEDARKAFESLFE--KN----LVSYNTMVDAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++..+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666666532 11 123444566666777777777777776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=4.3 Score=39.79 Aligned_cols=197 Identities=17% Similarity=0.133 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc-hHHHHHHH-
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKS-GFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNV-ISWTSMIT- 563 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 563 (861)
...+......+...+.+..+...+...... ........+..+...+...+.++.+.+.+..... ++. ..+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444455555555555555555544432 2234445555666666666777777777776654 221 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhh
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP----NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLG 637 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~ 637 (861)
.+...|++++|...|++... ..| ....+......+...+..+++...+..... ..+ ....+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHH
Confidence 67788888888888888865 333 233444444456677888888888888773 233 3566777778888
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 638 RSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
..+++++|...+.... ..|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888887763 3443 455666666666667899999999999999987
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.072 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.72 E-value=6.9 Score=41.47 Aligned_cols=381 Identities=12% Similarity=0.054 Sum_probs=194.2
Q ss_pred HhcCCchHHHHHHHHHHHC--CCCC------------CcccHHHHHHHHhccCCchHHHHHHHHHHHhCC----CCccch
Q 002975 259 TQLGCPRDAIRLFLDMILS--GFLP------------DRFTLSGVVSACSELELFTSGKQLHSWAIRTGL----ALDVCV 320 (861)
Q Consensus 259 ~~~g~~~~A~~l~~~m~~~--g~~p------------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~----~~~~~~ 320 (861)
-+.+.+.+|++.+..-... +-.| |-.-=+....++...|.+.+|+.++..++..=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3566677777766655443 2211 111122344566788888888888887776544 478888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc
Q 002975 321 GCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN 400 (861)
Q Consensus 321 ~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 400 (861)
|+.++-++++.=- ++ +-+.+...=...|--||..|.+.=. .- +.-.=..+.|-...+..++....-
T Consensus 170 yd~~vlmlsrSYf---LE----l~e~~s~dl~pdyYemilfY~kki~-~~------d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRSYF---LE----LKESMSSDLYPDYYEMILFYLKKIH-AF------DQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHHHH---HH----HHHhcccccChHHHHHHHHHHHHHH-HH------hhchHHhhCcHHHHHHHHHHHHHh
Confidence 8888877776321 11 1111111112345556666554321 10 100001133444444444443321
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCc-chhhHHHHHHHHcCCHHHHHHHHHhc--------CCCCeehHHHHHHHHHhcCC
Q 002975 401 --LLDSNVAEQVYTHAVKRGRALDD-CVGNSLISMYARSGRMEDARKAFESL--------FEKNLVSYNTMVDAYAKNLN 469 (861)
Q Consensus 401 --~~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 469 (861)
...+.--.+++......-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233334444444444444432 233344444443 344444433333 12233567788888888888
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHH-------HHHHHHhh-ccc---chHHHHHHHHHHHHhCCCCchhHHHHHH---HHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTF-------ASLLSGAS-SIG---AIGKGEQIHARIIKSGFESNHCIYNALI---SMYS 535 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~-------~~ll~a~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~y~ 535 (861)
..+|-+.+.-+... .|+...- ..+.+..+ ... ++..-..++..+....+..- .....|+ .-|-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHH
Confidence 88888877766532 3332211 11111111 111 22222333333333322111 1111111 2333
Q ss_pred ccCC-HHHHHHHHHhccC---CCchHHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCChH----HHHHHHHH-
Q 002975 536 RCAN-VEAAFQVFKEMED---RNVISWTSMI----TGFAKH---GFAARALEIFYKMLADGIKPNGI----TYIAVLSA- 599 (861)
Q Consensus 536 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a- 599 (861)
+.|. -++|..+++.+.+ -|..+-|... .+|.+. ....+-+.+-+-..+.|+.|-.+ .-+.|..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4454 6778888887763 4544444322 233321 22344445555556678777433 22333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 600 -CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 600 -~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
+...|++.++.-+-..+. .+.|++.+|.-+.-.+....+++||.+++...| |+..+|++
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 456788888876655554 678899999888888888899999999999874 46566655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.71 E-value=13 Score=44.53 Aligned_cols=160 Identities=16% Similarity=0.215 Sum_probs=86.1
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
++.|+.-+.++. ...|+-.+.---+++. +.+|+.++ +|+...+..+..+|+.. +.+
T Consensus 896 y~~AL~hLs~~~---~~~~~e~~n~I~kh~L-y~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~~ 951 (1265)
T KOG1920|consen 896 YEDALSHLSECG---ETYFPECKNYIKKHGL-YDEALALY--------KPDSEKQKVIYEAYADH------------LRE 951 (1265)
T ss_pred HHHHHHHHHHcC---ccccHHHHHHHHhccc-chhhhhee--------ccCHHHHHHHHHHHHHH------------HHH
Confidence 455544444332 2223333333334455 66666663 57777776666555431 111
Q ss_pred cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHH--HHH
Q 002975 417 RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYT--FAS 494 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ 494 (861)
...++-..-+|.++|+.++|.+. |..+|++.+|+.+-.+|.. .-|... -..
T Consensus 952 ------~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 952 ------ELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred ------hccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11233345567788888887554 4446778888887776642 122221 134
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV 555 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 555 (861)
|..-+...++.-+|-++....... ..-.+..|++...+++|..+.......|.
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 455555666666665555443221 12345667777788888877666554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.47 Score=41.55 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=41.4
Q ss_pred hcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhC
Q 002975 619 EHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM----PLSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 619 ~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g 672 (861)
...+.|+.....+++.+|+..|++..|+++++.. +.+-+..+|..|+.-+...-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4456788888999999999999999998887765 35556788988887665544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=11 Score=43.12 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=102.8
Q ss_pred hHHHHHHHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCCcchhHHHHHHHHHcCCCCCcchHHHHHH
Q 002975 46 LSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSC----IRSRNFHLGKLVHSLLTRSKLEPNSVILNSLIS 121 (861)
Q Consensus 46 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 121 (861)
+.+.+--..+...+..|+.+-... ..|..+...+.+.| -+.|++++|...|-+.+.. ++ -..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le-----~s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LE-----PSEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CC-----hHHHHH
Confidence 344555667778888888765432 23444444444443 4568888887665554321 12 234555
Q ss_pred HHhcCCChHHHHHHHHhcCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhh
Q 002975 122 LYSKCGDLNEANKIFKSMGN--KRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIG 199 (861)
Q Consensus 122 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 199 (861)
-|....+...-...++.+.. -.+...-..|+.+|.+.++.++-.++.+.-. .|.. .+-+...+..|.+.+-.+.|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 56555555555556665521 1455556778888888888887666555433 2222 22355667777666666665
Q ss_pred hhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCC
Q 002975 200 HIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEK 246 (861)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~ 246 (861)
.-+-... .....+...++.- .+++++|.+.+..++-+
T Consensus 483 ~~LA~k~------~~he~vl~ille~----~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 483 ELLATKF------KKHEWVLDILLED----LHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHh------ccCHHHHHHHHHH----hcCHHHHHHHHhcCCHH
Confidence 5443322 2234444555443 56799999999998853
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.6 Score=49.74 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhh---------hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCC
Q 002975 606 ISEGWKHFRSMYDEHGIVQRME-HYACMVDLLG---------RSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGD 673 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~---------r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 673 (861)
.+.|..+|.+......+.|+-. .|..+...+. ......+|.++.++.. .+-|+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 5678888888876667777643 3333322211 2334667777777663 34477788788888888888
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 674 TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+.|...++++..++|+.+.++...+.+..-.|+.++|.+..++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998887544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.6 Score=46.79 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChhHHHHH-HHHhhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhCCHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQRMEHYACM-VDLLGRSGSLTEALEFIRSMPL------SADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
...+.+.++++.+.+.| |+...|... ..++...|++++|++.|+++.. +-....+--+.+.+...+++++
T Consensus 247 ~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34555666666655333 444333322 3355556666666666665421 1123444556677778889999
Q ss_pred HHHHHHHHhccCCCCCchHH-HHHHHHHHcCCh-------hHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHI-LLSNLYASAGHW-------EYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~-~L~~~y~~~g~~-------~~a~~~~~~m~~ 720 (861)
|...+.++.+.+.-....|. ..+-+|...|+. ++|.++++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999987766555554 667788888888 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.2 Score=44.64 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh---cCCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR---SGSLTEALEFIRSMP-LSA-DVLVWRTF 664 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r---~g~~~eA~~~~~~~~-~~p-~~~~~~~l 664 (861)
...|..|..+|...|+.+.|...|....+-.|- +.+.+..+...+.. .....++.++|+++. ..| |.....-|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 445555555555555555555555554422222 22223333332221 113445566666652 344 44455556
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
...+...|++.+|...++++++..|.+..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66788889999999999999988776543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.8 Score=42.40 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=42.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCC---Cee----hHHHHHHHHHh---cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 002975 429 LISMYARSGRMEDARKAFESLFEK---NLV----SYNTMVDAYAK---NLNSEKAFELLHEIEDTGVGTSAYTFASLLSG 498 (861)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 498 (861)
++-.|-...+++...++.+.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334466666777777777766443 111 11122334445 67888888888886666667777777766655
Q ss_pred h
Q 002975 499 A 499 (861)
Q Consensus 499 ~ 499 (861)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.31 Score=45.08 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=68.4
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSA-----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+-+...|++++|..-+..+. .++ ..+.|..-..+..+.+..+.|+...-++++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456677777766665541 122 23455555566778899999999999999999999889888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 002975 707 HWEYVANIRKRMKERN 722 (861)
Q Consensus 707 ~~~~a~~~~~~m~~~~ 722 (861)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998743
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.1 Score=38.54 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=60.4
Q ss_pred HHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 002975 530 LISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLI 606 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 606 (861)
++..+.+.+.......+++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444332 12334455555555443 2333333331 12333344466667777777
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS-GSLTEALEFIRSMPLSADVLVWRTFLGACR 669 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 669 (861)
+++..++..+.. +...++.+... ++.+.|.+++++- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 777776665431 12233434333 6777777777763 25567777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.39 Score=47.26 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 655 SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|++.-| |+.++...|+++.|...|..+.+-.|++ +..+.-|+.+..+.|+.++|..++..+-+
T Consensus 177 ~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 177 TPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred cchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444 5566666666666666666666655543 34456666666666666666666665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.61 E-value=17 Score=41.78 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcCCCCCce--eHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcC
Q 002975 115 ILNSLISLYSKCGDLNEANKIFKSMGNKRDIV--SWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSN 192 (861)
Q Consensus 115 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 192 (861)
....-|+.+.+-.-++.|..+-+.-...++.. .......-+.+.|++++|...|-+-... +.| +.+++-+-.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 44566777788888888888876654422221 1222333445688999998888776532 233 345555655
Q ss_pred CcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 193 TENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 193 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
......-...++.+.+.| -.+...-+.|+..|.| .++.+.-.+..+...
T Consensus 410 aq~IknLt~YLe~L~~~g--la~~dhttlLLncYiK-lkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIK-LKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHH-hcchHHHHHHHhcCC
Confidence 555556666677777777 2334445667777777 666666555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.56 E-value=5.6 Score=39.83 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=89.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
......|++.+|..+|....+. .|+ ...-..+..++...|++++|..++..+-.+.. .........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888774 332 34555677778888888888888876542211 0111112234556666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCChhH-HHHHHHH
Q 002975 642 LTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQ--DPQDPAAHILLSNLYASAGHWEY-VANIRKR 717 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~~y~~~g~~~~-a~~~~~~ 717 (861)
..+..++..+....| |...--.|...+...|+.+.|...+-.+++. .-+|...-..|..++...|.-|. +.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 665555555554455 4445555666677777777776665555553 33455666666666666664444 3334444
Q ss_pred H
Q 002975 718 M 718 (861)
Q Consensus 718 m 718 (861)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.53 E-value=2.3 Score=43.33 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=111.2
Q ss_pred HcCCHHHHHHHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHH-Hhhc-CCCCCH---HHHHHHHHHhhccc
Q 002975 435 RSGRMEDARKAFESLFEK------NLVSYNTMVDAYAKNLNSEKAFELLHE-IEDT-GVGTSA---YTFASLLSGASSIG 503 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~-g~~p~~---~t~~~ll~a~~~~~ 503 (861)
...+.++|+..+.+..++ -..++..+..+.+..|.+++++..--. |... ...-.. ..|..+.+++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666554332 123556666677777777766553221 1110 011111 22333333444444
Q ss_pred chHHHHHHHHHHHH-hCCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccC-------C--CchHHHHHHHHHHhcCC
Q 002975 504 AIGKGEQIHARIIK-SGFES---NHCIYNALISMYSRCANVEAAFQVFKEMED-------R--NVISWTSMITGFAKHGF 570 (861)
Q Consensus 504 ~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~ 570 (861)
++.+++++-..-.. .|..+ .....-++..++.-.+.++.+++.|+...+ + ....+..|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 44444443322221 12111 112333455566666677777777775542 1 23467777777888888
Q ss_pred hHHHHHHHHHHHHc--CCCCC--hHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhh---cCCCC-ChhHHHHHHHHhh
Q 002975 571 AARALEIFYKMLAD--GIKPN--GITYIAVL-----SACSHAGLISEGWKHFRSMYDE---HGIVQ-RMEHYACMVDLLG 637 (861)
Q Consensus 571 ~~~A~~~~~~m~~~--g~~p~--~~t~~~ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~l~~~~~ 637 (861)
+++|+-+..+..+. .+..+ ...|..++ -++...|.+-.|.++.++..+- .|-.+ ......++.|.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 88887766665442 12211 22344332 2456667777777777665532 12222 1123446777788
Q ss_pred hcCCHHHHHHHHHhC
Q 002975 638 RSGSLTEALEFIRSM 652 (861)
Q Consensus 638 r~g~~~eA~~~~~~~ 652 (861)
..|+.+.|+.-++.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888877766653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.4 Score=39.06 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=46.6
Q ss_pred hhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCC
Q 002975 636 LGRSGSLTEALEFIRSMP----LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA---HILLSNLYASAGH 707 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~L~~~y~~~g~ 707 (861)
..+.|++++|.+.|+.+. ..| ....--.|+.++...|+++.|...+++.++++|.++.+ +...+-++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 335666666666666552 222 23344557888899999999999999999999987653 3344444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=6.3 Score=38.71 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPA---AHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
.-|.++|.+.-|..-++.+++--|+.+. ++..|.++|...|..++|.+..+.+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3455666666666666666666555443 33345556666666666666555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.40 E-value=2 Score=47.75 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHhccC--CCchHHHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCChHHHHHHHHHHHhcCCHHHHH
Q 002975 537 CANVEAAFQVFKEMED--RNVISWTSMI-TGFAKHGFAARALEIFYKMLADG--I-KPNGITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~ 610 (861)
....+.|.++++.+.+ |+...|...- ..+...|+.++|++.|++..... . +.....+.-+...+....++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4456777788877775 6666665443 44556788888888887655311 1 112344555666677777888888
Q ss_pred HHHHHHHhhcCCCCChhHHHHH-HHHhhhcCCH-------HHHHHHHHhCC
Q 002975 611 KHFRSMYDEHGIVQRMEHYACM-VDLLGRSGSL-------TEALEFIRSMP 653 (861)
Q Consensus 611 ~~~~~m~~~~~~~p~~~~~~~l-~~~~~r~g~~-------~eA~~~~~~~~ 653 (861)
..|..+.+.....+ ..|.-+ .-.+...|+. ++|.++|++.|
T Consensus 326 ~~f~~L~~~s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88887775433322 233322 2244455555 66777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.37 E-value=1 Score=49.14 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=82.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~ 641 (861)
.....|+++++..+.+.-. +-|. ..-...++.-+.+.|..+.|+++-+.-. .-.++..+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCC
Confidence 3445677777665553111 1221 2335566666777888888877654322 23467778899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 642 LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 642 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
++.|.++.++.. +...|..|...+..+||.+.|+.+++++- -+..|.-+|...|+-+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999888876653 67799999999999999999998888753 3566778888888887777776666654
Q ss_pred C
Q 002975 722 N 722 (861)
Q Consensus 722 ~ 722 (861)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.4 Score=37.67 Aligned_cols=112 Identities=12% Similarity=0.028 Sum_probs=53.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP---NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG 640 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g 640 (861)
...+.|++++|++.|+.+...= +. ....-..++.++...|++++|...+++.++.+.-.|++ .|.-...+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 3345566666666666665531 11 12334445566666666666666666665433333332 2222222222111
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
..+ ..+..+. ..=+..+....|...++++++..|++.
T Consensus 97 ~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 111 1111111 001122246788888899999999763
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.5 Score=42.59 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=71.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH----HhhhcCCHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD----LLGRSGSLT 643 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~----~~~r~g~~~ 643 (861)
.|+..+|...++++++. .+.|...+.-.-.+|...|+.+.-...++++... ..++...|.-+-. .+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555555555553 3334455555555666666666555555555422 1333333332222 234566666
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 644 EALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 644 eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
+|++.-++.. +.| |.-.-.++.......|+.+++.+..++--..--+ -.-.|-..+-.|.+.+.++.|.+++..
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6666665542 222 2222333444455555666665554443221110 012344555556666666777666653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=8.9 Score=37.16 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=39.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHhc----cCCCCCchHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP-------LSADV-LVWRTFLGACRVHGDTELGKHAAEMILE----QDPQDPAAHILL 698 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~L 698 (861)
.....|.|..+++||-..|.+-. .-++. ..+-+++-.+.-..|+..|++.++..-+ +.|++..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 33445555666666555544321 11221 1122233333444466666666666444 234454454444
Q ss_pred HHHHHHcCChhHHHHHH
Q 002975 699 SNLYASAGHWEYVANIR 715 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~ 715 (861)
...| ..|+.+++.++.
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 4433 345556555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.93 E-value=9.8 Score=40.61 Aligned_cols=150 Identities=10% Similarity=-0.044 Sum_probs=83.1
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcCCCCChhH
Q 002975 553 RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP---NGITYIAVLSACSHAGLISEGWKHFRSMYD-EHGIVQRMEH 628 (861)
Q Consensus 553 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~ 628 (861)
....+|..++..+.+.|+++.|...+.++...+... +......-+...-..|+-++|...++...+ ...-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888999999999999888888744222 223333445556677888888888877764 1111111111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 629 YACMVDLLGRSGSLTEALEF-IRSMPLSADVLVWRTFLGACRVH------GDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...++.+.+++|+...++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111110000 00000000 00000000112333333334444 788999999999999999988888887776
Q ss_pred HHH
Q 002975 702 YAS 704 (861)
Q Consensus 702 y~~ 704 (861)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.77 Score=44.92 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=81.2
Q ss_pred HHHHHHhcc--CCCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------
Q 002975 543 AFQVFKEME--DRNVISWTSMITGFAKH-----GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGL---------- 605 (861)
Q Consensus 543 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 605 (861)
.++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..|+..+-+...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 57778888888877644 4555566677888999999999999999887654432
Q ss_pred ------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCH-HHHHHHHHhCC
Q 002975 606 ------ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSL-TEALEFIRSMP 653 (861)
Q Consensus 606 ------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~-~eA~~~~~~~~ 653 (861)
-+=++.++++|. .+|+.||.++-..++++++|.|.. .+-..+.--||
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234788999998 889999999999999999999863 34444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=10 Score=37.23 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred HccCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhc----
Q 002975 535 SRCANVEAAFQVFKEMEDRNV------ISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPNGITYIAVLSACSHA---- 603 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~---- 603 (861)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+...++.+.. +-.|| .-|...|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356888888888887764221 23334556666788888888888888774 22222 3344444443322
Q ss_pred ---CCH---HHHHHHHHHHHhhcCCC---CChh------------HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----
Q 002975 604 ---GLI---SEGWKHFRSMYDEHGIV---QRME------------HYACMVDLLGRSGSLTEALEFIRSMP-LSAD---- 657 (861)
Q Consensus 604 ---g~~---~~a~~~~~~m~~~~~~~---p~~~------------~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~---- 657 (861)
.+. .+|..-|+..+.++.-. ||.. +=..+...|.+.|...-|..-+++|. .-|+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 222 23444444444444222 1211 12235567889999988888887773 1222
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
...+--+..+|...|-.++|....+-+-.-.|++.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 22444567889999999999988766665566553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.8 Score=37.58 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHHhcc--CCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEME--DRN-VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|-+.-|.--|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+ +.|. ..++.+-.-++.-.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444433 333 34566666666677777777777777777 4453 33444444455566777777665
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD- 691 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 691 (861)
|...-....-.|-...|-- +--+.=+..+|..-+.+--...|..-|+.-+-.+..-+--+ +.+++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~ 230 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNT 230 (297)
T ss_pred HHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchH
Confidence 5443322222222222221 11233355555543322213445566666544433221111 11223333322222
Q ss_pred ------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 692 ------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 692 ------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+|.-|+.-|...|..++|..+++....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 36788999999999999999999997765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.2 Score=43.96 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACM 632 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 632 (861)
|+.-+. +.+.|++.+|...|...++.. |+ ...+.-|..++...|++++|..+|..+.+.++-.|.. +.+-.|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 345566788888887777742 32 2344457777777888888888777777666555543 444444
Q ss_pred HHHhhhcCCHHHHHHHHHh
Q 002975 633 VDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~ 651 (861)
...+.+.|+.++|...+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 4444444444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.20 E-value=6.4 Score=34.14 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
....+..+...|+-++-.++++++.+. -++++.....+..||.+.|...++.+++.+.-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344566677777777777777777653 36677777778888888888888888877776
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.19 E-value=24 Score=40.77 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHcc--
Q 002975 461 VDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRC-- 537 (861)
Q Consensus 461 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~-- 537 (861)
...+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-..... ..+.... -.+...-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998877 3356777888877777664433222222 2222111 112225677888888864
Q ss_pred -CCHHHHHHHHHhccC
Q 002975 538 -ANVEAAFQVFKEMED 552 (861)
Q Consensus 538 -g~~~~A~~~~~~~~~ 552 (861)
.+..+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 678888888877663
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.8 Score=46.02 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG 640 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g 640 (861)
.+.|.++|.+++|++.|.+.+. +.| |.+++..-..||.+...+..|..-...... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 3457788888888888888777 567 788888888888887777766554443331 0012234444433
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
. +-...|+.++|..-++.+++++|++-
T Consensus 173 ~-------------------------AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 Q-------------------------ARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred H-------------------------HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 3 22344566777778888888888753
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.05 E-value=8.7 Score=34.46 Aligned_cols=130 Identities=10% Similarity=0.045 Sum_probs=83.8
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...-..++..+.+.+.....+.+++.+...+ ..+...++.++..+++.+ .++...+++. ..+......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567888888899999999999999876 356667888888887653 3445555542 11222233466
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH-GDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
..+.+.+.++++.-++.++... ...+..+..+ ++.+.|++.+++ ++++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 7777788888888888877422 2233333344 788888887775 234555655555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.7 Score=35.37 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=42.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHHhhhcC
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVDLLGRSG 640 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~r~g 640 (861)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.-+++..+-.|-.-.. ..|.--..+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34455666666666666555 333 24456666666666666666665555555333322111 11222223444555
Q ss_pred CHHHHHHHHHh
Q 002975 641 SLTEALEFIRS 651 (861)
Q Consensus 641 ~~~eA~~~~~~ 651 (861)
+.+.|..-|+.
T Consensus 130 ~dd~AR~DFe~ 140 (175)
T KOG4555|consen 130 NDDAARADFEA 140 (175)
T ss_pred chHHHHHhHHH
Confidence 55555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.5 Score=43.10 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHH
Q 002975 300 TSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDM 379 (861)
Q Consensus 300 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m 379 (861)
+-.-..+..|.+.|++.|..+|+.|++.+-|..- +.-|.+-..+..-.+.-+-+++++++|
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-------------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqM 149 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-------------------IPQNVFQKVFLHYPQQQNCAIKVLEQM 149 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------------ccHHHHHHHHhhCchhhhHHHHHHHHH
Confidence 3333445556666666777777777666544211 111222222332222245688999999
Q ss_pred hhCCCCCChhhHHHHHHHhcccCCh-HHHHHHHHHHHH
Q 002975 380 IQGQVAPNHFTFASVLKACGNLLDS-NVAEQVYTHAVK 416 (861)
Q Consensus 380 ~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~ 416 (861)
...|+.||..+-..+++++++.+.. .+..++.-.|-+
T Consensus 150 E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 150 EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999998877654 334444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.54 E-value=21 Score=37.86 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
.|...+++..+...++.|+.+|.++.+.+ ..+++.++++++..|+ .|+..-|..+|+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 33444444445555555555555555555 3445555555555444 244444444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.31 Score=31.03 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777888888888888888888888884
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.25 E-value=32 Score=39.35 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 572 ARALEIFYKMLADGIKP-----NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
+..+++|-+.-...+-| ........+..|.+.|-++|-.-++.+|- .++.+|--.--+-+++++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 34555555554433322 11122334445555555555555554442 12233333333445555565
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC
Q 002975 647 EFIRSMPLSADVLVWRTFLGACRVHG 672 (861)
Q Consensus 647 ~~~~~~~~~p~~~~~~~ll~~~~~~g 672 (861)
++.++ ..|...|..|++.+..+=
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCc
Confidence 55554 347788888888776553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.75 Score=46.19 Aligned_cols=88 Identities=10% Similarity=-0.049 Sum_probs=73.9
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.+-|.++|+++||++.+.+. ...| +++.+..-..+|.+.+.+..|+.-.+.++.++-....+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 35678999999999999764 5666 888888888999999999999999999999988777788888888888888888
Q ss_pred HHHHHHHHHh
Q 002975 711 VANIRKRMKE 720 (861)
Q Consensus 711 a~~~~~~m~~ 720 (861)
|.+-.+...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8887776544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.00 E-value=20 Score=36.67 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcccchH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-C--CchHHHHHHHH
Q 002975 491 TFASLLSGASSIGAIG---KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-R--NVISWTSMITG 564 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 564 (861)
++..++.++...+..+ +|..+.+.+... ++..+.++-.-++.+.+.++.+++.+++.+|.. . ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4444555555544433 334444444332 222344444445555556677777777766653 1 22344444444
Q ss_pred H---HhcCChHHHHHHHHHHHHcCCCCC
Q 002975 565 F---AKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 565 ~---~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+ ..+ ....|...+.+++...+.|.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 3 222 23455555555555444444
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=5.9 Score=36.12 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=52.9
Q ss_pred HccCCHHHHHHHHHhcc--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 535 SRCANVEAAFQVFKEME--D-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
-..|++++|..+|.-+. + -|..-|..|..++-..+++++|+..|......+ .-|+..+.....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 35677777777777554 2 345556666677777777777777777666533 2234445556667777777777777
Q ss_pred HHHHHH
Q 002975 612 HFRSMY 617 (861)
Q Consensus 612 ~~~~m~ 617 (861)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 776665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.43 E-value=21 Score=35.91 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=69.9
Q ss_pred hhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCC-chHHH---HHHHHHHhcCChHHH
Q 002975 499 ASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRN-VISWT---SMITGFAKHGFAARA 574 (861)
Q Consensus 499 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~~A 574 (861)
....|+...+..+++.+.... +-+...--.|...|...|+.+.|..++..++... ...|. .-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345667777777777766653 3345566678888999999999999999887321 11222 223344444444444
Q ss_pred HHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 575 LEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 575 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
..+-++.-. .| |...-..+...+...|+.++|.+.+-.+.
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444333333 45 44455557777778888888877554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.05 E-value=9.4 Score=39.30 Aligned_cols=126 Identities=16% Similarity=0.306 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHc--cC----CHHHHHHHHHhccC-------CCchHHHHHHHHHHhcCC---
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSR--CA----NVEAAFQVFKEMED-------RNVISWTSMITGFAKHGF--- 570 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~--- 570 (861)
+...+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 334455555555555555444432222222 11 23456666776663 233444444433 2222
Q ss_pred -hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhc-CC--HHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 571 -AARALEIFYKMLADGIKPN-GITYIAVLSACSHA-GL--ISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 571 -~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~-g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.+++..+|+.+.+.|+..+ ..-+.+-+-++... .. +..+.++++.+. +.|+++...+|..+.-+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence 3556777888888787664 33333333333322 21 456778888887 56888888888766443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.88 E-value=3.8 Score=44.79 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADG 585 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 585 (861)
+...|..|.+...+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 445666666666666666666666665432 4445555555565555444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=3.4 Score=41.71 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHhCCHHH
Q 002975 603 AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PL-SADVLVW----RTFLGACRVHGDTEL 676 (861)
Q Consensus 603 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~-~p~~~~~----~~ll~~~~~~g~~~~ 676 (861)
.|...+|-..++++.+++ +.|.-.+.-.-+++.-.|+.+.-...|++. |. .+|...| +-+.-+....|-++.
T Consensus 116 ~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 577788888888888654 445555666667888889988888888886 33 4554322 333344567899999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|++.++++++++|.|.=+.-.++-++...||..|+.+...+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999888889999999999999999876644
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.54 E-value=38 Score=37.57 Aligned_cols=343 Identities=13% Similarity=0.090 Sum_probs=194.9
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHh-cccCChHHHHHHHHHHHHc-CCC-CCcchhhHHHHHHHHcCCH
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKAC-GNLLDSNVAEQVYTHAVKR-GRA-LDDCVGNSLISMYARSGRM 439 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~ 439 (861)
.+-|. .+.+.++|++-++. ++-....+...+.-+ ...|+.+.....|+.+... |.. .+...|...|..-..++++
T Consensus 90 ~klg~-~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGN-AENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhh-HHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 34455 66777777776553 444555555555433 3556777777777776552 321 2333455556655667778
Q ss_pred HHHHHHHHhcCCCCeehHHHHHHHHHh---c------CChhHHHHHHHHHhh--------------------cCCCCCHH
Q 002975 440 EDARKAFESLFEKNLVSYNTMVDAYAK---N------LNSEKAFELLHEIED--------------------TGVGTSAY 490 (861)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~l~~~m~~--------------------~g~~p~~~ 490 (861)
.....+++++.+-....++..-.-|.+ . -..+++.++-..... .+-+.+..
T Consensus 168 k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l 247 (577)
T KOG1258|consen 168 KRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSL 247 (577)
T ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchh
Confidence 888888877755444444433333322 1 122233222222111 00011111
Q ss_pred H--HHHHHHHhhc-------ccchHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-
Q 002975 491 T--FASLLSGASS-------IGAIGKGEQIHARIIKSG-------FESNHCIYNALISMYSRCANVEAAFQVFKEMEDR- 553 (861)
Q Consensus 491 t--~~~ll~a~~~-------~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 553 (861)
+ .+.+...+.. .......+..++.-++.- .+++..+|..-++--.+.|+.+.+.-+|+...-|
T Consensus 248 ~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c 327 (577)
T KOG1258|consen 248 TEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC 327 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH
Confidence 1 1111111111 111111111222222210 1234677888888888999999999999988643
Q ss_pred --CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHH
Q 002975 554 --NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYA 630 (861)
Q Consensus 554 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~ 630 (861)
-...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-+...|+.+.|..+++.+.+++ |+.. .-.
T Consensus 328 A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l 404 (577)
T KOG1258|consen 328 ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVL 404 (577)
T ss_pred hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHH
Confidence 2234554444444558888888777766664333334443333334667899999999999998665 5432 223
Q ss_pred HHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----H-HHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEAL---EFIRSM-PLSADVLVWRTFL----G-ACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~---~~~~~~-~~~p~~~~~~~ll----~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
.-+.+..|.|+++.+. +++... +..-+..+...+. . .+...++.+.|..++.++.+..|++...|..+.++
T Consensus 405 ~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 3456788999999988 555544 2222333333222 2 24567899999999999999999999999999998
Q ss_pred HHHcCChhH
Q 002975 702 YASAGHWEY 710 (861)
Q Consensus 702 y~~~g~~~~ 710 (861)
....+...|
T Consensus 485 ~~~~~~~~e 493 (577)
T KOG1258|consen 485 ELIQPSGRE 493 (577)
T ss_pred HHhCCcchh
Confidence 777764333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.29 E-value=5.6 Score=36.61 Aligned_cols=137 Identities=10% Similarity=0.056 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC
Q 002975 165 IHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT 244 (861)
Q Consensus 165 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~ 244 (861)
++..+.+.+.|+.|+...+..+++.+.+.|......++ ++.+.++++..+...|++.-.+ ...+.++=-+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~----~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQ----YPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHcc----ChHHHHHHHHHH
Confidence 34555566677778877888888888777765544333 3333244444455455444322 222333333333
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 002975 245 EKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTG 313 (861)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 313 (861)
.+=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++......+
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 33233567788889999999999999877532 233445667777777777776666666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.25 E-value=40 Score=37.41 Aligned_cols=179 Identities=12% Similarity=-0.028 Sum_probs=93.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 002975 423 DCVGNSLISMYARSGRMEDARKAFESLFEKN---LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGA 499 (861)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 499 (861)
..+|+.-++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3456666666777777777777777764431 1234444444444477766666665554433332222222222233
Q ss_pred hcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH---HHHHhcc--CCCchHHHHHHHH-----HHhcC
Q 002975 500 SSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF---QVFKEME--DRNVISWTSMITG-----FAKHG 569 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~--~~~~~~~~~li~~-----~~~~g 569 (861)
-..|+...|..+++.+...- +.-+.+-..-+.+..+.|..+.+. +++.... +.+....+.+.-- +.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 44567778888877776653 222333333455566677777766 3333332 1222222222222 22356
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
+.+.|..++.++.+. +.++..-|..++.-+...
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 677777777777773 334455555555544433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.18 E-value=13 Score=34.36 Aligned_cols=131 Identities=14% Similarity=0.238 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcC--CChHHHHHHHHhcC
Q 002975 63 IFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKC--GDLNEANKIFKSMG 140 (861)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~ 140 (861)
++..+.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+|.......+-.+... .-..-|...+.+++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566777889999999999999999999987555444 6667766666555444333322 12455566666665
Q ss_pred CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhhhhhh
Q 002975 141 NKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFL 206 (861)
Q Consensus 141 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 206 (861)
. .+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++...
T Consensus 90 ~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 T-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 3777888999999999999998875322 2233345566655555544433343333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=29 Score=35.54 Aligned_cols=136 Identities=11% Similarity=-0.005 Sum_probs=59.7
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHG-FAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
++..+-...+.++++.++.+....+..-+.++|...-...+.++.+.+ +..++...+..++. .+|...-...+.++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 344555555566666655433333333333444444444444444432 13345555555553 33444444455555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGAC 668 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~ 668 (861)
.+.|. .++...+-...+. ++ .....+.+++.-|.- +|...+.++. ..||..+-...+.+|
T Consensus 217 g~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55555 3344433333311 11 122344555555553 4555554443 244444444444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.89 Score=29.52 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKML 582 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~ 582 (861)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777644
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.70 E-value=49 Score=37.73 Aligned_cols=328 Identities=11% Similarity=0.077 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccC---ChHHHHHHHHHHHHcCCCCCcchhhHHHHH
Q 002975 356 TAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLL---DSNVAEQVYTHAVKRGRALDDCVGNSLISM 432 (861)
Q Consensus 356 ~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 432 (861)
..+|.-++..+. +..|+++-..|...-..- ...|.....-+.+.. +-+.+..+-+.+... . .+...|..+..-
T Consensus 441 ~~vi~Rl~~r~~-Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHL-YSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcch-hHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 345666666666 777777776664332222 445555555444432 222233333332221 2 233445555555
Q ss_pred HHHcCCHHHHHHHHHhcCCC--------CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 433 YARSGRMEDARKAFESLFEK--------NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
--.+|+.+-|..+.+.=+.. +..-+..-+.-..+.|+.+-...++-.|..+- +...|... ..+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHh
Confidence 56688888888877654321 11223344444555666666666555554321 11111111 122
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH-HHhcc-----CCCchHHHHHHHHHHhcCC--------
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQV-FKEME-----DRNVISWTSMITGFAKHGF-------- 570 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~-~~~~~-----~~~~~~~~~li~~~~~~g~-------- 570 (861)
...|..++.+..+.. |. ..|-+.|-...+...+-.+ ++... +.-..........+++...
T Consensus 588 ~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred chhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 233444444433321 00 1122223222222222111 11100 1111122223334443322
Q ss_pred --hHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHH
Q 002975 571 --AARALEIFYKMLAD-GIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 571 --~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
..+-+.+.+.+..+ |..-...|.+--+.-+...|.-.+|.++-.+.+ .|+...|--=+.++...+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 11122333333322 323333455555666778899888888765543 4677777777788999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+-+++. .+.-|.-+..+|.+.|+.++|...+-++-. +.-...+|.+.|.+.+|.+.--+-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 888764 245666788899999999998887655422 225778899999999998865433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.69 Score=30.02 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555533
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.69 E-value=1 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777777777777777776 4453
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.9 Score=29.53 Aligned_cols=32 Identities=19% Similarity=0.539 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNG 590 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (861)
+|..+...|...|++++|+++|++.++ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 466677777777777777777777777 45653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.36 E-value=77 Score=38.39 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
+.++...|+|++++.+..++.. +-.--..+-..|+..+..+++.-||-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4455555666666655554431 111111122345555556666666655555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.64 E-value=40 Score=35.83 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...+|..+...|+++|+++.|..++.++.+.++. .+...+.-+.+.-..|+..+|....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568899999999999999999999999987632 456677779999999999999988776655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.59 E-value=15 Score=34.46 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccCCC------chHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMEDRN------VISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666667777777766666665432 12444555556666666666666555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.57 E-value=8.2 Score=43.35 Aligned_cols=183 Identities=19% Similarity=0.335 Sum_probs=111.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH----------HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchh
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY----------TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHC 525 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 525 (861)
+...|+-.|....+++..+++.+.++.. ||.. .|.-.++---+.|+-++|+.+.-.+.+..-+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va-- 277 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA-- 277 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC--
Confidence 4455666777778888888888887743 3322 233334444456677777776655554321111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHHh
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI---TYIAVLSACSH 602 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~ 602 (861)
-++||-||++ |+.|- +-+.|...+..+.|++.|++..+ +.|+.. .+..|+.+
T Consensus 278 -----pDm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a--- 332 (1226)
T KOG4279|consen 278 -----PDMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA--- 332 (1226)
T ss_pred -----Cceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH---
Confidence 1356666654 22221 12345566677889999999988 788754 34444443
Q ss_pred cCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002975 603 AGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 603 ~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
.|. ++...++ +.+ | -.|-.+++|.|.++.-.++++-. ..+.+....+|+.+|.+++
T Consensus 333 aG~~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 333 AGEHFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred hhhhccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 332 2222211 111 1 23456789999998877766432 3566677788999999999
Q ss_pred HHHhccCCCC
Q 002975 682 EMILEQDPQD 691 (861)
Q Consensus 682 ~~~~~~~p~~ 691 (861)
+++++++|..
T Consensus 390 e~mfKLk~P~ 399 (1226)
T KOG4279|consen 390 EMMFKLKPPV 399 (1226)
T ss_pred HHHhccCCce
Confidence 9999999865
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.55 E-value=4.9 Score=40.46 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLA-----DGIKPNGITYIA 595 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 595 (861)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44677788889999999999988888774 3567899999999999999999999888765 477777666554
Q ss_pred HHHH
Q 002975 596 VLSA 599 (861)
Q Consensus 596 ll~a 599 (861)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.88 E-value=4.4 Score=36.75 Aligned_cols=71 Identities=20% Similarity=0.115 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCh
Q 002975 638 RSGSLTEALEFIRSMP-LSADVLVWRT-FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHW 708 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~ 708 (861)
+.++.+++..++..+. ..|....... -...+...|++..|+++++.+.+-.|..+..--+++.++...|+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4455555555555552 3443332222 222344555555555555555555555555555555555555543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=5.2 Score=40.34 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+.|-.++...++++.|.++.+.++.+.|+++.-+..-+-+|+..|.+..|..-++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3456667789999999999999999999999999999999999999999999998876654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.38 E-value=4.7 Score=35.88 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=39.1
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERN 722 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~ 722 (861)
..++.+.++.++.-+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777777777777777777777777778877777777665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.2 Score=38.36 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHH
Q 002975 643 TEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 643 ~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a 711 (861)
++|.+.|-.+...| +.......+..+....|.++++..+-+++++.+. |+..+..|+++|...|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56666666664333 3444455566677788999999999999987543 578888999999999999886
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.08 E-value=57 Score=34.77 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHhccC----CCchHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHH
Q 002975 537 CANVEAAFQVFKEMED----RNVISWTSMITGFA-KHGFAARALEIFYKMLADGIKPN----GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 607 (861)
.|+-++|.+.+..+.. +....+-.|+.+-. ...+..+|+++|++..- .-|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888999999888763 34556777776544 56678999999998876 4554 334455555677889999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHH----HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYAC----MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~----l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
++..+-..-...|...|-...+.. .+.-+...-..+.-.+++..|.-.-...+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988776666667777776554433 2222333334555556666664333456888888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHH
Q 002975 684 ILEQDPQDPAAHILLSNLYASA-----GHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAEL 758 (861)
Q Consensus 684 ~~~~~p~~~~~~~~L~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l 758 (861)
+..+-. ....-...+++|... ...+++.+....+ ..++.+|+-..+.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I------------------------~~~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI------------------------DRDKLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC------------------------ChhhCChhhHHHHHHH
Confidence 999874 344444555666543 2344444433322 1234567777777767
Q ss_pred HHHHHHHHhc
Q 002975 759 DQLALKIKEF 768 (861)
Q Consensus 759 ~~l~~~~~~~ 768 (861)
..+-.++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 7776666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.80 E-value=59 Score=34.72 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHH-HHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADG-IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHY-ACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l 632 (861)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-...+ ||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4567777777777766888899999999988 5667777888777554 577888888887655333 444443 345
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
++.+.+-++-+.|..+|+... ...+ ..+|..++..-...|+..-+...-++..++-|+....-+.++.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 677888899999999998652 2223 4688899988889999998888888888888876544444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.53 E-value=34 Score=35.25 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHhc--cCC----chHHHHHHHHHHHhCC---CCccchHHHHHHHHHhCCCCC
Q 002975 265 RDAIRLFLDMILSGFLPDRFTLSGVVSACSE--LEL----FTSGKQLHSWAIRTGL---ALDVCVGCSLVDMYAKCTVDG 335 (861)
Q Consensus 265 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~----~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g~~g 335 (861)
++.+++++.|.+.|++-+.++|.+.+-.... ..+ ...++.++..|.+.-. .++-.++..|+.+ ...+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~-- 154 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED-- 154 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc--
Confidence 4566788889999998888887765443333 111 3345555555555432 1222233333222 1000
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHhcccCC--hHHHHHHH
Q 002975 336 SVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNH--FTFASVLKACGNLLD--SNVAEQVY 411 (861)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~i~ 411 (861)
++. ..+++..+|+.+...|...+. ...+.+|..+....+ ...+.+++
T Consensus 155 -~e~----------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 155 -VEE----------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred -HHH----------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 000 045667778888777776633 334444444433332 34677888
Q ss_pred HHHHHcCCCCCcchhhHHH
Q 002975 412 THAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 412 ~~~~~~g~~~~~~~~~~li 430 (861)
+.+.+.|++.....|..+.
T Consensus 206 ~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHcCCccccccccHHH
Confidence 8888888877777666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.29 E-value=83 Score=35.98 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=42.1
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-C--ChhHHHH
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVH----GDTELGKHAAEMILEQDPQDPAAHILLSNLYASA-G--HWEYVAN 713 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g--~~~~a~~ 713 (861)
+.+.+..++.+....-+......|...+..- .+.+.|...+.++-+.. +.....|+.++..- | ++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 4555555555554444444444444443322 25666766666666655 55666666666442 1 1566666
Q ss_pred HHHHHHh
Q 002975 714 IRKRMKE 720 (861)
Q Consensus 714 ~~~~m~~ 720 (861)
.+....+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 6665554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.79 E-value=6.8 Score=28.12 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFG 769 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g 769 (861)
.+..|+-.+.+.|++++|.+..+.+.+ .+|...+.......+.++|++.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 356788889999999999999887766 35666666666666777887776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=25 Score=32.24 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHhcCCCCeehHHHHH-----HHHHhcCChhHHHHHHHHHhhc
Q 002975 436 SGRMEDARKAFESLFEKNLVSYNTMV-----DAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
.+..++|+.-|..+.+.+--.|-.|. ....+.|+..+|...|.+.-..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34444444444444433333333322 2234455555555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.53 E-value=33 Score=31.30 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRME-HYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
...++.+++..+++.+. -+.|... +-..-+-++.+.|++.+|+.+++++. ..|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 44556666666666665 3344322 11222345566777777777777764 2334444456666665544333334
Q ss_pred HHHHHHhccCC
Q 002975 679 HAAEMILEQDP 689 (861)
Q Consensus 679 ~~~~~~~~~~p 689 (861)
..++.+++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44555666555
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.32 E-value=2.5 Score=30.33 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
.|.-++.+.|+++.|.+..+.+++.+|+|..+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35567899999999999999999999998555433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.29 E-value=14 Score=30.23 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD 584 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 584 (861)
.++|..|-+-+...+- ....+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3445555444444331 122222233345667899999999998888899999877643 4677777777778888877
Q ss_pred CCCCChHHHHH
Q 002975 585 GIKPNGITYIA 595 (861)
Q Consensus 585 g~~p~~~t~~~ 595 (861)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.16 E-value=42 Score=31.66 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHH-----HHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYAC-----MVDLLGRSGSLTEALEFIRSMPLSAD--VLVWRTFLGAC 668 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~r~g~~~eA~~~~~~~~~~p~--~~~~~~ll~~~ 668 (861)
+...+...|++++|..-++... . . |..+.+.. |...+...|.+|+|+..++... .++ +..-..-..++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l-~--~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQAL-A--Q-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHH-c--c-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHH
Confidence 3445667777888877776554 1 1 22233333 3446777889999998888763 222 22223344668
Q ss_pred HHhCCHHHHHHHHHHHhccCCCC
Q 002975 669 RVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
...|+.+.|...|+++++.++++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCCh
Confidence 88999999999999999887544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.95 E-value=13 Score=34.88 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh------h
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM------E 627 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 627 (861)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+......-..+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 466778888999999999999999988876666543 56778888888889888888877765322221111 2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.|..+. +...|++.+|-+.|-...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 335778888888876653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.66 E-value=2.6 Score=26.58 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 456667777777777777777777776 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.46 E-value=12 Score=30.51 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
++.-+-.+..-|++.+..+-+.|||+.+|+..|++.++-+...-.++...|-.
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 33333445578899999999999999999999999999777444334444544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.33 E-value=26 Score=34.12 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=43.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHc
Q 002975 632 MVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASA 705 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~ 705 (861)
-..+|..+|..+-|-.-+++.. -....-+.+.|++++++.+.+--.+ ...|-.++++|.+.
T Consensus 97 As~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3455566666555544444431 0123346777777777766642222 23355678889999
Q ss_pred CChhHHHHHHHHH
Q 002975 706 GHWEYVANIRKRM 718 (861)
Q Consensus 706 g~~~~a~~~~~~m 718 (861)
.+++||...+.+-
T Consensus 164 ~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 164 EKFTEAATAFLKE 176 (308)
T ss_pred HHhhHHHHHHHHh
Confidence 9999987766543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.27 E-value=15 Score=32.07 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 673 DTELGKHAAEMILE-QDPQDP-AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~-~~p~~~-~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+..+++.+++.+++ -.|+.. .....|+-.+++.|+++.+.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 55666666776665 344332 2333566666777777777776665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=82.11 E-value=64 Score=33.04 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=42.6
Q ss_pred hHHHHHHHhcccCChHH---HHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CeehHHHHHHH
Q 002975 390 TFASVLKACGNLLDSNV---AEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEK---NLVSYNTMVDA 463 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~---a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 463 (861)
++..+..++...+..+. +..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444455554444333 33333333222 2223334434445555566666666666666321 12334444444
Q ss_pred HHh--cCChhHHHHHHHHHhhcCCCCC
Q 002975 464 YAK--NLNSEKAFELLHEIEDTGVGTS 488 (861)
Q Consensus 464 ~~~--~g~~~~A~~l~~~m~~~g~~p~ 488 (861)
+-+ ......|...+..+....+.|.
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 311 1223445555555544433433
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.91 E-value=1.1e+02 Score=35.56 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 002975 251 WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSEL 296 (861)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 296 (861)
--++|--+.+.|++++|.++..+... +.......|...+.++...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 33566666777777777777644433 2444455666666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.74 E-value=11 Score=37.89 Aligned_cols=97 Identities=11% Similarity=0.195 Sum_probs=72.1
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-CC--------chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-RN--------VISWTSMITGFAKHGFAARALEIFYKMLADGIKP 588 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (861)
.|.+....+...++..-....+++++...+-.+.. ++ ..+|-.+ + ..=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhcccc
Confidence 35555666667777777777888888888776652 22 2233222 2 2335779999999989999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 589 NGITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 589 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
|..|++.+++.+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777663
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.64 E-value=0.76 Score=41.65 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=57.9
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhH
Q 002975 84 LLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVD 163 (861)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 163 (861)
+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..+-+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~----~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS----NNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----SSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----cccCHHHHHHHHHhcchHHH
Confidence 45566666777777778888887766667788888888888888777777777633 22444567777777777777
Q ss_pred HHHHHHHH
Q 002975 164 AIHMFVEM 171 (861)
Q Consensus 164 A~~~~~~m 171 (861)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.26 E-value=12 Score=30.42 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+.-++.+-++.+....+.|++....+.+.||.+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666777777788999999999999999999999999999988754443 3445665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.98 E-value=46 Score=30.66 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=77.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh-HHHHH--HHHhhhcC
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME-HYACM--VDLLGRSG 640 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--~~~~~r~g 640 (861)
+++.+..++|+.-|.++.+.|...=++ .-..........|+-.+|...|+++-.+..+ |... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 356677888888888888876543322 2233444566778888888888887643322 2221 11212 22456778
Q ss_pred CHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 641 SLTEALEFIRSMPLSA---DVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
.+++.....+.+..+- ....-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888877777764222 234556677778888999999988888876
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.75 E-value=50 Score=32.26 Aligned_cols=53 Identities=11% Similarity=-0.066 Sum_probs=45.2
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...|++-+++.....++..+|.|..+|..-+.+.+..=+.++|.+-+....+
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34668888899999999999999999999999988888888888888777765
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.70 E-value=3.1 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
.|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666666666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.61 E-value=2.8 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCChhHHHHHHH
Q 002975 693 AAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999988764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.61 E-value=61 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.050 Sum_probs=49.0
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..|...|.+.+|.++.++++.++|-+...+..|.++|+..|+--.|.+-++.+.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 458899999999999999999999999999999999999999888887777664
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.41 E-value=0.89 Score=46.02 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 002975 638 RSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 638 r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
..|.+++|++.+... +..| ....+..-.+++.+.+....|++-+..+++++|+.+..|-.-+......|.|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777655 3333 34455556677788888889999999999999999999998888999999999999998
Q ss_pred HHHHhCCCccCC
Q 002975 716 KRMKERNLIKEA 727 (861)
Q Consensus 716 ~~m~~~~~~~~~ 727 (861)
...-+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888777665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.18 E-value=12 Score=30.86 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 573 RALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+...-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556667777789999999999999999999999999999988665543 336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.17 E-value=32 Score=32.43 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 563 TGFAKHGFAARALEIFYKMLADGIKPN------GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
.-+..+|++++|..-|.+.++. -|. .+.|..-..|+.+.+.++.|+.-....+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 3456678888888888888774 332 3345555556667777777666554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 29/274 (10%), Positives = 75/274 (27%), Gaps = 15/274 (5%)
Query: 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEI-EDTGVGTSAY 490
+ RM+ + + F+ T L S++ L +
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEE 93
Query: 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550
A LL A ++ + + ++ A + A +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 551 EDR-------NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603
+ + + +++ G+A+ G + + + + G+ P+ ++Y A L
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 604 GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-------PLSA 656
+ + + G+ + A ++ R+ L + + P
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690
+ R +L + + Q
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 1e-09
Identities = 45/379 (11%), Positives = 99/379 (26%), Gaps = 31/379 (8%)
Query: 370 KEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSL 429
+ A L Q +P A +L+ L +V + + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 430 ISMYARSGRMEDARKAFESLFEK-------NLVSYNTMVDAYAKNLNSEKAFELLHEIED 482
+ ++ A + L YN ++ +A+ ++ +L ++D
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 483 TGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541
G+ ++A+ L G E+ ++ + G + L+S R ++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 542 AAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601
A +V ++ L Y P + L
Sbjct: 254 AVHKVKPTFSLPPQ---------LPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304
Query: 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVW 661
L E V +E + + + L L +
Sbjct: 305 EKQLHME--------LASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRET 356
Query: 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721
+ R+ + G+ + L + +LL L A E + + +
Sbjct: 357 KN-----RLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLAREL-SA 410
Query: 722 NLIKEAGCSWIEADNKVHK 740
+V
Sbjct: 411 RTFSRHVVQRQRVSGQVQA 429
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 3e-09
Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 6/173 (3%)
Query: 31 SSSPPFIAQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIR 90
+ Q + L+ RL Q A D Q P + + LL+
Sbjct: 45 KAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPG 104
Query: 91 SRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSMGNKR------D 144
+ + + ++++L L + L A+ + +R
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 145 IVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVA 197
+ +++++ + +G + +++ + + G P+ ++A ++ + A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 4e-08
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 8/138 (5%)
Query: 368 RDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQV---YTHAVKRGRALDDC 424
Q Q++ + K C +A + + ++ + L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 425 VGNSLISMYARSGRMEDARKAFESLFEK----NLVSYNTMVDAYAKNLNSEKAFE-LLHE 479
+ N+++ +AR G ++ + + +L+SY + + E L +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 480 IEDTGVGTSAYTFASLLS 497
+ G+ A A LLS
Sbjct: 227 MSQEGLKLQALFTAVLLS 244
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 3e-07
Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDH-------NVMSWTAIITGYVQSGGRDKEAVKL 375
+ + + + + + A++ G+ + G KE V +
Sbjct: 132 AFFKCCLLT---DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYV 187
Query: 376 FSDMIQGQVAPNHFTFASVLKACGNL-LDSNVAEQVYTHAVKRGRALDDCVGNSLISMYA 434
+ + P+ ++A+ L+ G D+ E+ + G L L+S
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 435 RSGRMEDARKAFES 448
R+ ++ K +
Sbjct: 248 RATVLKAVHKVKPT 261
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 8e-06
Identities = 26/212 (12%), Positives = 57/212 (26%), Gaps = 18/212 (8%)
Query: 2 MTLSLPAPAKIPPPSSFKPSNPSRQNLPPSSSPPFIAQPTTSEPLSNRLIYHLND----- 56
M L + P S ++ P + Q + + +L
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 57 ------GRVQKAIFTLDL---MTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRS 107
++ A L + QK LD Y+ ++ R F V ++ +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 108 KLEPNSVILNSLISLYSKCGDLNEA-NKIFKSM---GNKRDIVSWSSMISSYVNRGKQVD 163
L P+ + + + + + + M G K + + ++S
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 164 AIHMFVEMLELGFCPNEYCFSAVIRACSNTEN 195
+ P S ++R +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 68/440 (15%), Positives = 129/440 (29%), Gaps = 133/440 (30%)
Query: 432 MYARSGRME----DARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGT 487
M +G + D FE F N + V K++ S++ + + +D GT
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS-RCANVEAAFQV 546
F +LLS K E++ + ++ N Y L+S ++
Sbjct: 65 L-RLFWTLLS---------KQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRM 111
Query: 547 FKEMEDR-----------NV---------------------ISWTSMITGFAKHGFAARA 574
+ E DR NV + ++ G K A
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDV 170
Query: 575 L---EIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYAC 631
++ KM I ++ + + S ++ K + + R +H
Sbjct: 171 CLSYKVQCKM------DFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDH--- 219
Query: 632 MVDLLGRSGSLTEAL-EFIRSMPL--SADVL-------VWRTFLGACRV--------HGD 673
++ R S+ L ++S P VL W F +C++ D
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 674 TELGKHAAEMILEQDP----QDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGC 729
+ L+ D +LL L + ++L +E
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---------------DCRPQDLPREV-L 323
Query: 730 SWIEADNKVHKFHV---GET--SHPKTLEIYAEL--DQLALKIKEFGYLPDTNFVLHELE 782
+ + E+ T + + + D+L I+ L+ LE
Sbjct: 324 -------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---------LNVLE 367
Query: 783 -EEQKVQY----LFQHSEKI 797
E + + +F S I
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 102/697 (14%), Positives = 198/697 (28%), Gaps = 232/697 (33%)
Query: 26 QNLPPSSSPPFIA-------QPTTSEPLSNRLIYHL--NDGRVQKAIFTLDLMTQKGNHP 76
+++ F+ Q LS I H+ + V + + K
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-- 76
Query: 77 DLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGD-LNEANKI 135
+ ++ +R N+ L++ K E + + +Y + D L N++
Sbjct: 77 --EMVQKFVEEVLR-INYKF------LMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQV 125
Query: 136 FKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTEN 195
F K + V+R + + + L P +
Sbjct: 126 FA----KYN-----------VSRLQPYLKLRQALLELR----PAKNV------------- 153
Query: 196 VAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESA--YKVFDKMTEKNTVGWTL 253
+I G +L G K V L+ YKV KM + W L
Sbjct: 154 -----LIDG-VLGSG-----------------KTWVALDVCLSYKVQCKMD--FKIFW-L 187
Query: 254 MITRCTQLGCPRDAI----RLFLDMILSGF-LPDRF--TLSGVVSACSELELFTSGKQL- 305
+ C P + +L + + D + S +EL K
Sbjct: 188 NLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 306 ----------HSWAIRTGLALDVCVGC-SLVDMYAKCTVDGSVDD---SRKVFDRMLDHN 351
++ A A ++ C L+ T V D + LDH+
Sbjct: 245 NCLLVLLNVQNAKAWN---AFNL--SCKILL-----TTRFKQVTDFLSAATTTHISLDHH 294
Query: 352 VMSWT-----AIITGYVQSGGRD--KEAVK-------LFSDMIQGQVA-------PNHFT 390
M+ T +++ Y+ +D +E + + ++ I+ +A N
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 391 FASVLKACGNLLDSNVAEQVYTHAVKRGRAL----DDC-VGNSLISMYARSGRMEDARKA 445
+++++ N+L+ +++ L + L+S+ D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 446 FESLFEKNLVSYNTMVDAYAKNLNSEK------AFELLHEIEDTGVGTSAYTFASLLSGA 499
L + +LV K EL ++E+
Sbjct: 408 VNKLHKYSLV---------EKQPKESTISIPSIYLELKVKLENEY--------------- 443
Query: 500 SSIGAIGKGEQIHARII-----KSGFESNHC--------IYNAL------ISMYSRCANV 540
+H I+ F+S+ Y+ + I R
Sbjct: 444 ----------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 541 EAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALE--IFYKMLADGIKPNGITYIAVLS 598
F F+ +E + I S T + G L+ FYK I N Y +++
Sbjct: 494 RMVFLDFRFLEQK--IRHDS--TAWNASGSILNTLQQLKFYK---PYICDNDPKYERLVN 546
Query: 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635
A F +E+ I + Y ++ +
Sbjct: 547 A----------ILDFLPKIEENLICSK---YTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 67/482 (13%), Positives = 134/482 (27%), Gaps = 156/482 (32%)
Query: 26 QNLPPSSSPPFIAQPTTSEPLSNRLIYHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLL 85
Q L P + ++ S + ++ + + L+ K + + LL+
Sbjct: 203 QKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAEL----RRLLKSK-PYEN----CLLV 249
Query: 86 ------KSCIRSRNFHLG-KLVHSLLTRSK---------------LEPNSVILN-----S 118
+ F+L K++ L TR K L+ +S+ L S
Sbjct: 250 LLNVQNAKAWNA--FNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 119 LISLY--SKCGDL-NEANKIFK---SM--GNKRDIVS-WSSMISSYVNRGKQVDAIHMFV 169
L+ Y + DL E S+ + RD ++ W + +VN K I +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSL 363
Query: 170 EMLELGFCPNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKG 229
+LE P EY R + + F + L+ +
Sbjct: 364 NVLE----PAEY------RKM------------F---DRLSVFPPSAHIPTILLSLI--- 395
Query: 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLD--MILSGFLPDRFTLS 287
W +I + ++ ++
Sbjct: 396 ---------------------WFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 288 GVVSACSELELFTSGKQLH-----SWAIRTGLALDVCVGCSL--VDMY---------AKC 331
+ + LH + I D +D Y
Sbjct: 430 SI--YLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNI 484
Query: 332 TVDGSVDDSRKVF------DRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVA 385
+ R VF ++ + H+ +W A +G + + + +K + I
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQ---LKFYKPYIC---- 535
Query: 386 PNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKA 445
N + ++ A + L + E + + D + +L M E+A K
Sbjct: 536 DNDPKYERLVNAILDFL-PKIEENLI-----CSKYT-DLLRIAL--MAEDEAIFEEAHKQ 586
Query: 446 FE 447
+
Sbjct: 587 VQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 85/607 (14%), Positives = 184/607 (30%), Gaps = 173/607 (28%)
Query: 260 QLGCPRDAIRLFLDMILSGF----LPDRFTLSGVVSACSEL-ELFTSGKQLHSWAIRTGL 314
Q +D + +F D + F + D ++S E+ + S + T
Sbjct: 15 QYQY-KDILSVFEDAFVDNFDCKDVQD--MPKSILSK-EEIDHIIMSKDAVS----GTLR 66
Query: 315 ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAV- 373
+ + V V++ + +++ + + I T Q + +
Sbjct: 67 LFW------TLLSKQEEMVQKFVEEVLR-----INYKFL-MSPIKTEQRQPSMMTRMYIE 114
Query: 374 ---KLFSDMIQGQVAPNHF-----TFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCV 425
+L++D QV + + + +A LL+ A+ V V G
Sbjct: 115 QRDRLYND---NQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGVL-G------S 161
Query: 426 GNS-LISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTG 484
G + + S +++ + F+ +F NL + N+ + + L LL++I+
Sbjct: 162 GKTWVALDVCLSYKVQC-KMDFK-IFWLNLKNCNS-PETVLEMLQK-----LLYQIDPN- 212
Query: 485 VGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAF 544
+ S +S+I + I A + + + N L+ + NV+ A
Sbjct: 213 -------WTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYE--NCLLVL----LNVQNA- 256
Query: 545 QVFKEME----------DRNVISWTSMITGFAKH--------GFAAR-ALEIFYKMLADG 585
+ + + V + H + K L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--D 312
Query: 586 IKPNGITYIAVLSACSHA----GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641
+P + + +I+E + + +D +H C
Sbjct: 313 CRPQDLP----REVLTTNPRRLSIIAESIRDGLATWD------NWKHVNCD--------K 354
Query: 642 LTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEM--ILEQDPQDPAAHILLS 699
LT +E S +VL + + + + P LLS
Sbjct: 355 LTTIIE------SSLNVL-------------EPAEYRKMFDRLSVFPPSAHIPTI--LLS 393
Query: 700 NLYASAGHWEY-----VANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEI 754
+ W V + ++ + +L+++ K + LE+
Sbjct: 394 LI------WFDVIKSDVMVVVNKLHKYSLVEK--------QPKESTISI----PSIYLEL 435
Query: 755 YAELDQL-AL--KIKEFGYLPDTNFVLHELEEEQKVQYLFQHSEKIAVAFGLISTSKSKP 811
+L+ AL I + Y F +L QY + H + L + +
Sbjct: 436 KVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSH-----IGHHLKNIEHPER 489
Query: 812 IRVFKNL 818
+ +F+ +
Sbjct: 490 MTLFRMV 496
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.31 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.14 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.13 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.9 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.6 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.31 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.1 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.91 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.84 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.5 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.04 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.67 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.13 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.45 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.22 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.39 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.06 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.92 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 84.66 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.44 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.44 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.59 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.01 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 80.6 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.27 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=381.39 Aligned_cols=476 Identities=9% Similarity=-0.021 Sum_probs=400.0
Q ss_pred CCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 002975 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWA 309 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 309 (861)
+|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|.+.|++++|.+++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 67788888999999989999999999999999999999999999985 5678899999999999999999999999987
Q ss_pred HHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC-------------------CcccHHHHHHHHHhcCCChH
Q 002975 310 IRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH-------------------NVMSWTAIITGYVQSGGRDK 370 (861)
Q Consensus 310 ~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 370 (861)
... .++..+++.++.+|.++|+ +++|.++|+++... +..+|+.++.+|.+.|+ ++
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 217 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYD---WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FD 217 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTC---HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HH
T ss_pred hcc--ccchhHHHHHHHHHHHHhh---HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HH
Confidence 543 6788899999999999988 99999999965433 37899999999999999 99
Q ss_pred HHHHHHHHHhhCCCCCCh-hhHHHHHHHhcccCChHH--HHHH-HHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHH
Q 002975 371 EAVKLFSDMIQGQVAPNH-FTFASVLKACGNLLDSNV--AEQV-YTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAF 446 (861)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (861)
+|+++|++|.+. .|+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999875 3543 344444433333322221 1111 444444555555667777889999999999999999
Q ss_pred HhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCch
Q 002975 447 ESLFE--KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNH 524 (861)
Q Consensus 447 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 524 (861)
+++.+ ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++.+.|+.++|.+++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 788999999999999999999999999999765 3477889999999999999999999999999765 6688
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
.+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 9999999999999999999999998863 467899999999999999999999999999853 346789999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhC
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-------PLSAD--VLVWRTFLGACRVHG 672 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g 672 (861)
+.|++++|.++|+.+.+.. +.+..+|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|..+|
T Consensus 453 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999998542 336788999999999999999999999987 34777 789999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++++|+..++++++++|+++.+|..|+++|...|+|++|.+.++++.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998876
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=379.48 Aligned_cols=496 Identities=9% Similarity=-0.037 Sum_probs=332.2
Q ss_pred HhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchhhhhhh
Q 002975 123 YSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVAIGHII 202 (861)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 202 (861)
+.+.|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4456777778888888877 7888999999999999999999999999985 567888999999999999999999999
Q ss_pred hhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhcCC
Q 002975 203 YGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMTEK-------------------NTVGWTLMITRCTQLGC 263 (861)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 263 (861)
++.+.. .+++..+++.++.+|.+ +|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 140 ~~~~~~---~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 140 LTKEDL---YNRSSACRYLAAFCLVK-LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHTCG---GGTCHHHHHHHHHHHHH-TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhc---cccchhHHHHHHHHHHH-HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 998875 46789999999999999 99999999999964433 47899999999999999
Q ss_pred chHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHH---HH-HHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHH
Q 002975 264 PRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGK---QL-HSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDD 339 (861)
Q Consensus 264 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~---~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~ 339 (861)
+++|+++|++|.+.+ |+..+....+..+.......... .+ +..+...+......+++.++.+|.++|+ +++
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 290 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE---LRR 290 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH---HHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch---HHH
Confidence 999999999998753 54443322222222211111111 11 2223333333334455555666666655 666
Q ss_pred HHHHHhccCC--CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHc
Q 002975 340 SRKVFDRMLD--HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKR 417 (861)
Q Consensus 340 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 417 (861)
|.++|+++.+ ++..+|+.++..|.+.|+ +++|+++|++|.+.+
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~---------------------------------- 335 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILEID---------------------------------- 335 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHcC----------------------------------
Confidence 6666666654 455556666666666665 666666655554422
Q ss_pred CCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHH
Q 002975 418 GRALDDCVGNSLISMYARSGRMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFAS 494 (861)
Q Consensus 418 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 494 (861)
+.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++..|.+.|++++|.++|+++.
T Consensus 336 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------- 400 (597)
T 2xpi_A 336 --PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS------------- 400 (597)
T ss_dssp --TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred --cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------
Confidence 1122333333344444444444444443331 1223344444444444444444444444443
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA 571 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 571 (861)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++
T Consensus 401 ----------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 401 ----------------------TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp ----------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred ----------------------HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 322 33455666677777777777777777766542 3667778888888888888
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCC--hhHHHHHHHHhhhcCCHHHHH
Q 002975 572 ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEH---GIVQR--MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~r~g~~~eA~ 646 (861)
++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888887743 2356778888888888888888888888876432 56776 678888888888888888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
+.++++. .+.+..+|..++.+|...|+.++|...++++++++|+++.++..|+++|..
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8888763 344789999999999999999999999999999999999999999998854
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-24 Score=231.48 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=237.2
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCH
Q 002975 361 GYVQSGGRDKEAVKLFSDMIQGQVAPNH-FTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRM 439 (861)
Q Consensus 361 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 439 (861)
.+.+.|+ +++|++.+.++.+. .|+. ..+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGD-FEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566 77777777666553 3433 334444445566677777777776666653 44556677777777777777
Q ss_pred HHHHHHHHhcC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHH
Q 002975 440 EDARKAFESLF--EK-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARI 515 (861)
Q Consensus 440 ~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 515 (861)
++|.+.|+++. .| +..+|..+..++.+.|++++|++.|+++.... |+ ...+..+...+...|++++|.+.+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777663 23 33467777777777777777777777776543 33 344555666667777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hH
Q 002975 516 IKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GI 591 (861)
Q Consensus 516 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 591 (861)
.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+...+...|++++|+..|++..+ ..|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHH
Confidence 7654 44566777777777777777777777777652 2 345677777777777777777777777776 3454 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
++..+..++...|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|++.++++. .+.+..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 677777777777777777777777763 233 34567777777777777777777777663 344666777777777
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+.+.|+..++++++++|+++.++..++.+|...|++++|.+.++++.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=254.50 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=172.6
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc---------chHHHHHHHHHHHHhCCCCchh
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG---------AIGKGEQIHARIIKSGFESNHC 525 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 525 (861)
..++.+|++|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 48999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
+.|++++|.++|++|. +.+..|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 779999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-23 Score=229.16 Aligned_cols=362 Identities=11% Similarity=0.063 Sum_probs=274.0
Q ss_pred HHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLD--H-NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 337 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (861)
+++|.+.++.+.. | +...+..+...+.+.|+ .++|...++..... -+.+..++..+..++.+.|++++|.+.++.
T Consensus 15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555544421 2 23334444445555555 66666666555543 233455666666666666666666666666
Q ss_pred HHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 002975 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLF--EK-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 414 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 490 (861)
+.+.. +.+...+..+..+|.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.... +-+..
T Consensus 93 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 93 ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 66543 3334456667777777777777777777663 23 33456667777777888888888888877652 33466
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHh
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAK 567 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 567 (861)
++..+...+...|++++|...++.+++.+ +.+...+..+...|...|++++|...|++..+ | +..+|..+...|..
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 77788888888888888888888888765 55677888899999999999999999987762 3 56889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.|++++|+..|+++.+ ..|+ ..++..+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|++++|.
T Consensus 250 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 4565 668899999999999999999999999854 2456788999999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 647 EFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 647 ~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+.++++. ..| +..+|..++.++...|+.++|+..++++++++|+++.+|..++.+|...|+
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999874 334 578999999999999999999999999999999999999999999988774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=255.24 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 002975 369 DKEAVKLFSDMIQGQVAPN-HFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE 447 (861)
Q Consensus 369 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (861)
...+..+.+++.+.++.+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 3455566677766666543 3457777888888888888888888888888888888888888877776653221
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHH
Q 002975 448 SLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIY 527 (861)
Q Consensus 448 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 527 (861)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 224457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 528 NALISMYSRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..|+..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999997 5899999999999999999999999999999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-22 Score=219.29 Aligned_cols=322 Identities=11% Similarity=0.087 Sum_probs=234.7
Q ss_pred CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHH
Q 002975 351 NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 430 (861)
+...|..+...|.+.|+ +++|+.+|+++.+. .+.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34567777777777777 77777777777653 12345555556666666666666666666665553 23344445555
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
.+|.+.|++++|.+.|+++.+.++ ..|..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 555555555555555555432221 2333333221111 11222344677888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
+++|...+..+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888765 56788899999999999999999999998863 56789999999999999999999999999
Q ss_pred HHcCCCCChH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhhhcCCHHHHH
Q 002975 582 LADGIKPNGI-TYIAV------------LSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 582 ~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.+ ..|+.. .+..+ ..+|.+.|++++|..+|+.+.+...-.|. ..+|..++.++.+.|++++|+
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 98 456644 34333 78899999999999999999853322222 458899999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
+.++++. .+.+..+|..++.+|...|+++.|+..++++++++|+++.++..|+.+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999873 344688999999999999999999999999999999999999999943
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-21 Score=217.11 Aligned_cols=436 Identities=8% Similarity=-0.051 Sum_probs=247.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 002975 251 WTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAK 330 (861)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 330 (861)
|......+.+.|++++|+..|+++.+.. ||..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666543 555666666666666666666666666666553 2233455556666666
Q ss_pred CCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVA 407 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 407 (861)
.|+ +++|...|+++... +......++..+..... ...+.+.+..+...+..|+...+..-.............
T Consensus 86 ~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 86 LGK---FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA-MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp TTC---HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH-HHHHTTC---------------------------CCCCH
T ss_pred Hhh---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 555 66666666655221 22233333333332222 222222222222211112111111100000000011001
Q ss_pred HHHHHHHHHcCC---------CCCcchhhHHHHHHHH---cCCHHHHHHHHHhcCC----------------C-CeehHH
Q 002975 408 EQVYTHAVKRGR---------ALDDCVGNSLISMYAR---SGRMEDARKAFESLFE----------------K-NLVSYN 458 (861)
Q Consensus 408 ~~i~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 458 (861)
..+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +...|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111110000 1112222222232332 6667777776665533 1 234566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.+...+...|++++|+..|+++..... +..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 677777777777777777777776543 36667777777777777777777777776654 445667777777777888
Q ss_pred CHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 002975 539 NVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFR 614 (861)
Q Consensus 539 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 614 (861)
++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+|+
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888887777664 234567777777777788888888888877773 33 35567777777777888888888777
Q ss_pred HHHhhcCCCCC----hhHHHHHHHHhhh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 615 SMYDEHGIVQR----MEHYACMVDLLGR---SGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 615 ~m~~~~~~~p~----~~~~~~l~~~~~r---~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
.+.+...-.++ ...+..+...+.+ .|++++|.+.++++. .+.+..+|..+...+...|+.+.|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77643332332 3367777777777 788888877777652 23356677777777778888888888888888
Q ss_pred ccCCCCCchHHHH
Q 002975 686 EQDPQDPAAHILL 698 (861)
Q Consensus 686 ~~~p~~~~~~~~L 698 (861)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 8888776666555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-20 Score=212.21 Aligned_cols=389 Identities=11% Similarity=-0.013 Sum_probs=311.9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHhccC--CCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 002975 320 VGCSLVDMYAKCTVDGSVDDSRKVFDRML--DHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKA 397 (861)
Q Consensus 320 ~~~~li~~y~~~g~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 397 (861)
.+..+...|.+.|+ +++|...|+++. .|+...|..+...|.+.|+ +++|+..|+++.+.. +.+..++..+..+
T Consensus 8 ~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKK---YDDAIKYYNWALELKEDPVFYSNLSACYVSVGD-LKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhh-HHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 45566678888777 999999999884 3678889999999999999 999999999998753 2355688888899
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHH------------------------------
Q 002975 398 CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFE------------------------------ 447 (861)
Q Consensus 398 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------------------------ 447 (861)
+...|++++|...+..+.+.+ +++......++..+.+......+.+.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 3444444555554444333322222221
Q ss_pred --------hcCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHHhh-----cCCC--------CCHHHHH
Q 002975 448 --------SLFE---------K-NLVSYNTMVDAYAK---NLNSEKAFELLHEIED-----TGVG--------TSAYTFA 493 (861)
Q Consensus 448 --------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------p~~~t~~ 493 (861)
.... + +...+..+...+.. .|++++|+.+|+++.. .... .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1100 0 12233344444444 8999999999999987 3112 2345777
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC
Q 002975 494 SLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGF 570 (861)
Q Consensus 494 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 570 (861)
.+...+...|++++|...+..+.+.... ...+..+...|...|++++|...|+.+.+ .+...|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999987633 88899999999999999999999998764 466789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
+++|+..|+++.+. .| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus 320 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999984 44 46788889999999999999999999998543 234577888999999999999999999
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHH---hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 650 RSMP----LSAD----VLVWRTFLGACRV---HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 650 ~~~~----~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+++. ..++ ..+|..+...+.. .|+++.|+..++++++++|+++.++..++.+|...|++++|.+.++..
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8862 2232 4488999999999 999999999999999999999999999999999999999999999988
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=200.49 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=235.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 002975 315 ALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLD---HNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTF 391 (861)
Q Consensus 315 ~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~ 391 (861)
+.+...+..+...|.+.|+ +++|..+|+++.. .+...|..+...|...|+ +++|+..|+++.+.+ +.+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQ---LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC-CCcHHHH
Confidence 3456778889999999888 9999999998743 467889999999999999 999999999998753 2356788
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHcCCCCCc---chhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcC
Q 002975 392 ASVLKACGNLLDSNVAEQVYTHAVKRGRALDD---CVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNL 468 (861)
Q Consensus 392 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 468 (861)
..+...+...|++++|.+.+..+.+.. +.+. ..+..++..+... .+..+...+.+.|
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcC
Confidence 889999999999999999999998764 2333 4555554442211 1122233444455
Q ss_pred ChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHH
Q 002975 469 NSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFK 548 (861)
Q Consensus 469 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 548 (861)
++++|+..|+++.... +.+..++..+..++...|++++|.+.+..+.+.. +.+..++..+..+|.+.|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555432 2344455555555555555555555555555443 3445556666666666666666666666
Q ss_pred hccC--C-CchHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHHH
Q 002975 549 EMED--R-NVISWTSM------------ITGFAKHGFAARALEIFYKMLADGIKPN-----GITYIAVLSACSHAGLISE 608 (861)
Q Consensus 549 ~~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~ 608 (861)
++.+ | +...|..+ ...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++
T Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 5542 2 22333333 6667777777777777777776 3444 2356666777777777777
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHHhC--
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGA------------CRVHG-- 672 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-- 672 (861)
|..+++.+.+.. +.+...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ |...|
T Consensus 314 A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 314 AIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 777777766321 224566777777777777777777777765 2344 35555555532 33333
Q ss_pred ---CHHHHHHHHHH-HhccCCCCCc----------hHHHHHHHHHHcCChhH
Q 002975 673 ---DTELGKHAAEM-ILEQDPQDPA----------AHILLSNLYASAGHWEY 710 (861)
Q Consensus 673 ---~~~~a~~~~~~-~~~~~p~~~~----------~~~~L~~~y~~~g~~~~ 710 (861)
+.+++.+.+++ +++.+|++.. .+..++.+|...|+.+.
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888876 7888887543 23345555555555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=199.17 Aligned_cols=424 Identities=12% Similarity=0.009 Sum_probs=212.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHH
Q 002975 249 VGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMY 328 (861)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 328 (861)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.+..+++.. +.+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455666777777888888888888777643 2244556666666677777777777777766654 22345556666667
Q ss_pred HhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHH
Q 002975 329 AKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAE 408 (861)
Q Consensus 329 ~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 408 (861)
...|+ +++|...|+.+ ..+....+..+..+...+. ..+|+..++++.... |
T Consensus 104 ~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~l~~~--~---------------------- 154 (537)
T 3fp2_A 104 ESLGN---FTDAMFDLSVL-SLNGDFDGASIEPMLERNL-NKQAMKVLNENLSKD--E---------------------- 154 (537)
T ss_dssp HHHTC---HHHHHHHHHHH-C-----------CHHHHHH-HHHHHHHHHHHCC---------------------------
T ss_pred HHcCC---HHHHHHHHHHH-hcCCCCChHHHHHHHHHHH-HHHHHHHHHHHHHhC--c----------------------
Confidence 66666 77777766533 2222222223334444444 566666666664421 0
Q ss_pred HHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCee---hHHHHHHHHHh--------cCChhHHHHHH
Q 002975 409 QVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLV---SYNTMVDAYAK--------NLNSEKAFELL 477 (861)
Q Consensus 409 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~l~ 477 (861)
+..+........+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 155 ---------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp -------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 00001111122223333333444444333333322221 11111111111 12445555555
Q ss_pred HHHhhcCCCCC--------HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHh
Q 002975 478 HEIEDTGVGTS--------AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKE 549 (861)
Q Consensus 478 ~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 549 (861)
+++.... |+ ..++..+...+...|++++|...+..+.+.. |+...+..+...|...|++++|.+.|++
T Consensus 226 ~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5554322 22 1123333444445555555555555555542 2244555555555555555555555554
Q ss_pred ccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 550 MED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 550 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
+.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+|+.+.+.. +.+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 441 23445555555555555555555555555552 232 3455555555555555555555555555321 122
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC----CC----CCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhcc
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP----LS----ADVLVWRTFLGACRVH----------GDTELGKHAAEMILEQ 687 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 687 (861)
...+..+...+.+.|++++|.+.++++. .. .....+..+...+... |+++.|+..++++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 3445555555555566666555555531 01 1112233334445555 6666677777777766
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+++.++..++.+|...|++++|.+.++...+
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 676666666677777777777777666666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-16 Score=179.63 Aligned_cols=549 Identities=12% Similarity=0.090 Sum_probs=359.1
Q ss_pred CCCCcchHHHHHHHHhcCCChHHHHHHHHhc---------------CCCCCce----------------------eHHHH
Q 002975 109 LEPNSVILNSLISLYSKCGDLNEANKIFKSM---------------GNKRDIV----------------------SWSSM 151 (861)
Q Consensus 109 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------------~~~~~~~----------------------~~~~l 151 (861)
..-|+.+....|.+.++.|++.+..++.++- +- +|.. .....
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl-~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ 799 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 799 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCC-CCCCCceeeccccccHHHHHHHHHhcCchhH
Confidence 3457788888999999999988888777542 11 1211 01223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-----------CCcccHHHHHHHhcCCcchhhhhhhhhhhhhccCCCCchhHHH
Q 002975 152 ISSYVNRGKQVDAIHMFVEMLELGFC-----------PNEYCFSAVIRACSNTENVAIGHIIYGFLLKCGYFDSDVCVGC 220 (861)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 220 (861)
|.+|++.-++..+-.+...+...+.. .+......++..+-+.+++.....+++.-+..| ..|+.++|
T Consensus 800 ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g--~~~~~~hn 877 (1630)
T 1xi4_A 800 IEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG--CEEPATHN 877 (1630)
T ss_pred HHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHH
Confidence 44444443333332222222221111 112224445555555566666667777778888 77899999
Q ss_pred HHHHHhhhCCCCHHHHH------------HHHhcCCCCCcch----------HHHHHHHHHhcCCchHHHHHH-------
Q 002975 221 ALIDMFVKGSVDLESAY------------KVFDKMTEKNTVG----------WTLMITRCTQLGCPRDAIRLF------- 271 (861)
Q Consensus 221 ~l~~~~~~~~g~~~~A~------------~~f~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~l~------- 271 (861)
+|...|....++.+.-+ +..++ +|... -.-||....+++.++..-+.+
T Consensus 878 alakiyid~n~npe~fL~~n~~yd~~~vgkyce~---rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~ 954 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK---RDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPE 954 (1630)
T ss_pred HHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh---cCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHH
Confidence 99999998444444411 11111 22111 223444444444433222211
Q ss_pred -----------------HHHHHCC--CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCccchHHHHHHHHHh
Q 002975 272 -----------------LDMILSG--FLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTG--LALDVCVGCSLVDMYAK 330 (861)
Q Consensus 272 -----------------~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~ 330 (861)
++-.... -.-|+.-....++++...|...++.++++.++..+ +..+....+.|+.+..+
T Consensus 955 lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIk 1034 (1630)
T 1xi4_A 955 LWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIK 1034 (1630)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH
Confidence 1111111 01122233556677777888888888888877332 12344556667766666
Q ss_pred CCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHH
Q 002975 331 CTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQV 410 (861)
Q Consensus 331 ~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 410 (861)
. + .........+...-+ ...+...+...|. +++|..+|++.. -.....+.++. ..+++++|.++
T Consensus 1035 a-D---~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl-yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1035 A-D---RTRVMEYINRLDNYD---APDIANIAISNEL-FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEF 1098 (1630)
T ss_pred h-C---hhhHHHHHHHhhhcc---HHHHHHHHHhCCC-HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHH
Confidence 5 2 333333333332112 3446667777888 899999988852 11111222222 66778888888
Q ss_pred HHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 002975 411 YTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 411 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 490 (861)
...+ .+..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++..
T Consensus 1099 Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~ 1168 (1630)
T 1xi4_A 1099 AERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 1168 (1630)
T ss_pred HHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccc
Confidence 7754 34678888999999999999999999764 667778888999999999999999998777654 3333
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCC
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGF 570 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 570 (861)
..+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|+
T Consensus 1169 Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1169 VETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE 1236 (1630)
T ss_pred ccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCC
Confidence 3335888888888887544442 2 345566667889999999999999999985 488899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIR 650 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~ 650 (861)
+++|++.+++. -+..+|..+..+|...|.+..|...... +.-+.+.+..++..|.+.|.+++|+.+++
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998876 3457888888899999998888876543 44566778899999999999999999998
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHHcCChhHHHH
Q 002975 651 SMP-LSA-DVLVWRTFLGACRVH--GDTELGKHAAEMILEQDP-----QDPAAHILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 651 ~~~-~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~L~~~y~~~g~~~~a~~ 713 (861)
... .++ ....|.-|.-++.+. ++..++.+.|.....+.| ++...|..+.-+|.+.|.|+.|..
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 763 444 345676666666655 477778888888888777 778889999999999999999984
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-18 Score=191.97 Aligned_cols=236 Identities=10% Similarity=-0.033 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
|..+...+...|++++|+..|++.... .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 444556677778888888888888765 4557778888888888899999999988888775 5567889999999999
Q ss_pred cCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998763 45678999999999999999999999999985 454 66888899999999999999999
Q ss_pred HHHHHhhcCCCC----ChhHHHHHHHHhhhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 613 FRSMYDEHGIVQ----RMEHYACMVDLLGRS----------GSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 613 ~~~m~~~~~~~p----~~~~~~~l~~~~~r~----------g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
|+.+.+...-.+ ....+..+...|.+. |++++|.+.++++. .+.+..+|..+...+...|+.+.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 999874332112 223344556777777 99999999999873 34467889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 002975 677 GKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~ 697 (861)
|...++++++++|++......
T Consensus 481 A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988776553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-14 Score=170.35 Aligned_cols=331 Identities=9% Similarity=0.039 Sum_probs=226.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhccCCC------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 002975 323 SLVDMYAKCTVDGSVDDSRKVFDRMLDH------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLK 396 (861)
Q Consensus 323 ~li~~y~~~g~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 396 (861)
..+..|...|. ..+|.+++++..-. +...-|.++.+..+. + ..+..+...+.. ......+..
T Consensus 990 ~~vKaf~~agl---p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D-~~Rv~eyI~kLd-------~~d~~eIA~ 1057 (1630)
T 1xi4_A 990 VTVKAFMTADL---PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D-RTRVMEYINRLD-------NYDAPDIAN 1057 (1630)
T ss_pred HHHHHHHhCCC---HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C-hhhHHHHHHHhh-------hccHHHHHH
Confidence 34445555444 66666666555321 112334444444444 2 333444433332 111233455
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHH-HHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH
Q 002975 397 ACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISM-YARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475 (861)
Q Consensus 397 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 475 (861)
.|...|.+++|.++|+... .+...+.. +-..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1058 Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 6667777777777777642 11111222 336777888888877663 35678888888888888888888
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCc
Q 002975 476 LLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNV 555 (861)
Q Consensus 476 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 555 (861)
.|.+. -|...|..++.+|.+.|+++++.+.+...++.. +++.+.+.++.+|++.+++++..... ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 88653 466777788888888888888888888777654 44444456888888888888644442 34566
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
..|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 67777888888888888888888774 377888888888888888888887653 34677777777
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 636 LGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+...|++..|....... .-++..+..++..|...|.+++|+..+++++.++|.+.+.+..|+.+|++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 78888888888877653 334455668888899999999999999999999999999999999988775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-17 Score=175.46 Aligned_cols=304 Identities=11% Similarity=-0.003 Sum_probs=193.5
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHH
Q 002975 389 FTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYA 465 (861)
Q Consensus 389 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 465 (861)
..+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555556666666666666666666543 33445556666666666666666666665522 23345666666666
Q ss_pred hcCChhHHHHHHHHHhhcCCCC---C-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVGT---S-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVE 541 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 541 (861)
..|++++|+..|++.... .| + ...+..+... .. ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 666666666666666543 23 1 1111111100 00 001122346667777777
Q ss_pred HHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 542 AAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 542 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+|.+.|+++.+ .+...|..+...|...|++++|+..++++.+. .| +..++..+...+...|++++|...|+...
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776652 34566777777777777777777777777763 34 35566777777777777777777777776
Q ss_pred hhcCCCCChh-H---------HHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHHhCCHHHHHHHH
Q 002975 618 DEHGIVQRME-H---------YACMVDLLGRSGSLTEALEFIRSMP-LSAD-V----LVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 618 ~~~~~~p~~~-~---------~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
+...-.+... . ...+...+.+.|++++|.+.++++. ..|+ . ..|..+...+...|+++.|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3321111111 1 1123566888889999888888763 2333 3 23445677888899999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 682 ~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-17 Score=176.00 Aligned_cols=326 Identities=11% Similarity=0.065 Sum_probs=250.0
Q ss_pred CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHH
Q 002975 351 NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLI 430 (861)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 430 (861)
|+..|..+...+...|+ +++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34567788889999999 999999999998753 2356788888889999999999999999999875 44667889999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 431 SMYARSGRMEDARKAFESLFEKNL------VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
.+|.+.|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 999999999999999999855433 22332211100 0112233445566677
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKM 581 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 581 (861)
+++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776654 45677788888888888888888888887763 45678888888888999999999999988
Q ss_pred HHcCCCCCh-HHHH------------HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHHhhhcCCHHHHH
Q 002975 582 LADGIKPNG-ITYI------------AVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 582 ~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~r~g~~~eA~ 646 (861)
.+. .|+. ..+. .+...+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 883 4543 2222 23666888999999999999988543222211 33556788999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 647 EFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 647 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+.+++.. .+.+..+|..+...+...|+++.|...++++++++|++...+..|..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9998873 3346889999999999999999999999999999999999988888776553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-17 Score=171.76 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=227.4
Q ss_pred CCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 420 ALDDCVGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777778888888888888887732 244566667778888888888888888887653 33556777777
Q ss_pred HHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH
Q 002975 497 SGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA 572 (861)
Q Consensus 497 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 572 (861)
..+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888887765 45677888899999999999999999988763 34677888889999999999
Q ss_pred HHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------CCCChhHHHHHHHHhhhcCCHHH
Q 002975 573 RALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHG-------IVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 573 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
+|+..|++..+. .|+ ...+..+...+...|++++|..+|+.+.+... .+.....+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999884 454 56888888999999999999999998875321 13345788889999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHcCChh
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY-ASAGHWE 709 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y-~~~g~~~ 709 (861)
|.+.++++. .+.+..+|..+...+...|+.+.|...++++++++|+++..+..|+.+| ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999998863 3346778999999999999999999999999999999999999999988 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-16 Score=162.67 Aligned_cols=263 Identities=10% Similarity=0.027 Sum_probs=228.1
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 002975 452 KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALI 531 (861)
Q Consensus 452 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 531 (861)
.+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|+.++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 3344566667788899999999999999999875 56788899999
Q ss_pred HHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCH
Q 002975 532 SMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLI 606 (861)
Q Consensus 532 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 606 (861)
..|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999998774 35678999999999999999999999999985 444 56777799999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHhCCHH
Q 002975 607 SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-L----------SADVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 607 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~~~ 675 (861)
++|..+|+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+...+...|+.+
T Consensus 176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999988322 2356788899999999999999999998762 1 334679999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999986654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=170.43 Aligned_cols=278 Identities=9% Similarity=-0.004 Sum_probs=219.8
Q ss_pred HHHcCCHHHHHH-HHHhcCC---C----CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 433 YARSGRMEDARK-AFESLFE---K----NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 433 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
|.-.|++++|.+ .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775532 1 34568888888899999999999999988763 4467788888888889999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHH---------------HHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTS---------------MITGFA 566 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 566 (861)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888876 55778888999999999999999999988763 2 2222221 133344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH
Q 002975 567 KHGFAARALEIFYKMLADGIKPN---GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~ 643 (861)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+.. +.+...+..+..++.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999984 454 6788899999999999999999999988432 234678899999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHHcCChhH
Q 002975 644 EALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-----------PAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 644 eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~L~~~y~~~g~~~~ 710 (861)
+|++.++++. .+.+..+|..+..++...|+++.|...+++++++.|++ ..++..|+.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999873 34467899999999999999999999999999999988 7889999999999999999
Q ss_pred HHHHHH
Q 002975 711 VANIRK 716 (861)
Q Consensus 711 a~~~~~ 716 (861)
|..+++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=168.28 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 002975 230 SVDLESAYKVFDKMTEKNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWA 309 (861)
Q Consensus 230 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 309 (861)
.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+...
T Consensus 16 ~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 788999999999997664 9999999999999999999999753 68889999999999999999999988877
Q ss_pred HHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChh
Q 002975 310 IRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHF 389 (861)
Q Consensus 310 ~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~ 389 (861)
.+. .+++.+.+.|+.+|.++|+ ++++.++++. |+..+|+.+...|...|. +++|..+|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~---l~e~e~f~~~---pn~~a~~~IGd~~~~~g~-yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNR---LAELEEFING---PNNAHIQQVGDRCYDEKM-YDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------C---HHHHTTTTTC---C----------------C-TTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCC---HHHHHHHHcC---CcHHHHHHHHHHHHHcCC-HHHHHHHHHHh---------h
Confidence 774 4557888999999999888 8887777653 555677777777777777 77777777765 2
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCC
Q 002975 390 TFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLN 469 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 469 (861)
.|. .|++++.+.|++++|.+.++++ .++.+|..++.+|...|+
T Consensus 150 n~~-----------------------------------~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 150 NFG-----------------------------------RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp CHH-----------------------------------HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred hHH-----------------------------------HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCc
Confidence 344 4555555555555555555554 244555555555555555
Q ss_pred hhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc--CCHHHHHHHH
Q 002975 470 SEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRC--ANVEAAFQVF 547 (861)
Q Consensus 470 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~ 547 (861)
++.|...... +..++.-...++..|.+.|.++++..+++...... +-...+|+-|.-+|+|- +++.+..+.|
T Consensus 193 f~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 193 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555332222 11122223344455555555555555555554333 33444555555555543 3444555555
Q ss_pred HhccC--------CCchHHHHHHHHHHhcCChHHHHH
Q 002975 548 KEMED--------RNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 548 ~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
..-.. .+...|.-+.-.|.+.++++.|..
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 43221 245667777777777777777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-14 Score=161.71 Aligned_cols=349 Identities=12% Similarity=0.041 Sum_probs=271.7
Q ss_pred HHHHHHHHhccCC-CCcccHHHHHHHHHh----cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc----cCChHHH
Q 002975 337 VDDSRKVFDRMLD-HNVMSWTAIITGYVQ----SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN----LLDSNVA 407 (861)
Q Consensus 337 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a 407 (861)
.+.|...|++..+ .+...+..|...|.. .++ .++|++.|++..+.| +...+..+-..+.. .+++++|
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7777777766533 345566666666666 666 788888888877654 44455555555555 6788888
Q ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHH----cCCHHHHHHHHHhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHH
Q 002975 408 EQVYTHAVKRGRALDDCVGNSLISMYAR----SGRMEDARKAFESLFE-KNLVSYNTMVDAYAK----NLNSEKAFELLH 478 (861)
Q Consensus 408 ~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~ 478 (861)
...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..|...|.. .++.++|++.|+
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 88888887765 45566777778877 7889999999987743 456678888888887 889999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhc
Q 002975 479 EIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEM 550 (861)
Q Consensus 479 ~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~ 550 (861)
+..+.| +...+..+...+.. .++.++|.+.+....+.| +...+..|..+|.. .++.++|...|+..
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 988765 55666677777765 789999999999988765 45677778888887 89999999999987
Q ss_pred cC-CCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcC
Q 002975 551 ED-RNVISWTSMITGFAKH-----GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG---LISEGWKHFRSMYDEHG 621 (861)
Q Consensus 551 ~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~ 621 (861)
.+ .+...+..|...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 286 ~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-- 360 (490)
T 2xm6_A 286 AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-- 360 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--
T ss_pred HHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--
Confidence 74 4667888888888887 89999999999999865 4456777777777766 789999999998843
Q ss_pred CCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCC---
Q 002975 622 IVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQ--- 690 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~--- 690 (861)
.+...+..+..+|.. .+++++|.+.+++.....++..+..|...+.. .+|.++|...++++.+.+|+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 438 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG 438 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence 356778888888888 89999999999987545578888899999888 89999999999999999954
Q ss_pred CCchHHHHHHHHHHc
Q 002975 691 DPAAHILLSNLYASA 705 (861)
Q Consensus 691 ~~~~~~~L~~~y~~~ 705 (861)
++.+...|+.++...
T Consensus 439 ~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 439 TENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHhcCHhH
Confidence 777777787776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=166.05 Aligned_cols=347 Identities=15% Similarity=0.151 Sum_probs=164.8
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
+++|.++++++..+ .+|..+..++.+.|+ +++|++.|.+. +|..+|..++.++...|++++|...+...++
T Consensus 19 ld~A~~fae~~~~~--~vWs~La~A~l~~g~-~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 19 LDRAYEFAERCNEP--AVWSQLAKAQLQKGM-VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHcCC-HHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999655 499999999999999 99999999763 6888999999999999999999998888777
Q ss_pred cCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Q 002975 417 RGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLL 496 (861)
Q Consensus 417 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 496 (861)
. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+.
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 45578899999999999999999988864 67779999999999999999999999987 3788999
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999888 378999999999999999999987777654 444445568899999999999999
Q ss_pred HHHHHHHcCCCCC-hHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhcCCCC------ChhHHHHHHHHhhhcCCHHHHHH
Q 002975 577 IFYKMLADGIKPN-GITYIAVLSACS--HAGLISEGWKHFRSMYDEHGIVQ------RMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 577 ~~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
+++..+. ..+- ...|+-+.-+++ +.+++.+.++.|.. ..+++| +..+|.-++-+|...++++.|..
T Consensus 229 lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 229 MLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999876 4444 334554444444 45566666666653 446666 45678999999999999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC----------chHHHHHHHHHHcCChhHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP----------AAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----------~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
.+-+-+ |++---..+.....+..+.|.--++..=-++-.|.-. --+.....++.+.|...-+...+..
T Consensus 304 tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~ 381 (449)
T 1b89_A 304 TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS 381 (449)
T ss_dssp HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHH
Confidence 776653 1211112233334444444444444333333333210 0012233445555555555555555
Q ss_pred HHh
Q 002975 718 MKE 720 (861)
Q Consensus 718 m~~ 720 (861)
++.
T Consensus 382 v~~ 384 (449)
T 1b89_A 382 VQN 384 (449)
T ss_dssp HHT
T ss_pred HHH
Confidence 444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=166.83 Aligned_cols=258 Identities=9% Similarity=-0.043 Sum_probs=210.0
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 002975 453 NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALIS 532 (861)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 532 (861)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988764 4467788888889999999999999999988875 556888999999
Q ss_pred HHHccCCHHHHHHHHHhccCCC-------------chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMEDRN-------------VISWTSMITGFAKHGFAARALEIFYKMLADGIKP---NGITYIAV 596 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 596 (861)
.|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999999876421 123344578889999999999999999985 44 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 674 (861)
...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++++|++.++++. ..| +..+|..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988432 3356789999999999999999999999873 334 588999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 675 ELGKHAAEMILEQDPQ------------DPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~------------~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
+.|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999887 36778899999999999999887765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=156.22 Aligned_cols=247 Identities=13% Similarity=0.066 Sum_probs=151.7
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCe----ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHH
Q 002975 432 MYARSGRMEDARKAFESLFEKNL----VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGK 507 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 507 (861)
-....|+++.|+..++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34557788888887777654432 2334466777778888777765543 134455566666666666666777
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002975 508 GEQIHARIIKSGF-ESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGI 586 (861)
Q Consensus 508 a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 586 (861)
|.+.++.+...+. +.+...+..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 7777766666543 33445555566666666777777666666 345556666666666666666666666666663
Q ss_pred CCChHHHH---HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 587 KPNGITYI---AVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 587 ~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
.|+..... .++..+...|++++|..+|+++.+. .+.++.+|+.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~~ 205 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLNG 205 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHHH
Confidence 34432111 1112222234455555555444422 2345667777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH-HHHHHHHHHh
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY-VANIRKRMKE 720 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~-a~~~~~~m~~ 720 (861)
+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777765 4566666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-14 Score=159.14 Aligned_cols=390 Identities=12% Similarity=0.107 Sum_probs=247.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 002975 318 VCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDH---NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASV 394 (861)
Q Consensus 318 ~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 394 (861)
...+..++. +.+.|+ ++.|..+|+++... +...|...+..+.+.|+ .++|..+|++.... .|+...+...
T Consensus 13 ~~~w~~l~~-~~~~~~---~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~-~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQP---IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKN-YDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp HHHHHHHHH-HHHSSC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred HHHHHHHHH-HHHhCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc--CCChHHHHHH
Confidence 334444444 234333 55666665555332 23345555555555555 66666666665543 2444444433
Q ss_pred HHHh-cccCChHHHHH----HHHHHHHc-CCCC-CcchhhHHHHHHHH---------cCCHHHHHHHHHhcCC-CCe---
Q 002975 395 LKAC-GNLLDSNVAEQ----VYTHAVKR-GRAL-DDCVGNSLISMYAR---------SGRMEDARKAFESLFE-KNL--- 454 (861)
Q Consensus 395 l~a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~--- 454 (861)
+... ...|+.+.|.+ +++..++. |..+ +..+|...+....+ .|+++.|..+|++... |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 3211 22344444333 44444332 3322 23344444444433 5666677777766543 111
Q ss_pred ehHHHHHHHH-------------HhcCChhHHHHHHHHH------hhcC---CCCCH--------HHHHHHHHHhhc---
Q 002975 455 VSYNTMVDAY-------------AKNLNSEKAFELLHEI------EDTG---VGTSA--------YTFASLLSGASS--- 501 (861)
Q Consensus 455 ~~~~~li~~~-------------~~~g~~~~A~~l~~~m------~~~g---~~p~~--------~t~~~ll~a~~~--- 501 (861)
..|....... .+.+++.+|..+++++ .+.. +.|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1222211100 1234567777777663 2221 24431 334443332221
Q ss_pred -ccch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-------cCCHH-------HHHHHHHhccC---C-CchHH
Q 002975 502 -IGAI----GKGEQIHARIIKSGFESNHCIYNALISMYSR-------CANVE-------AAFQVFKEMED---R-NVISW 558 (861)
Q Consensus 502 -~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~ 558 (861)
.++. +.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 1222 36677888888764 5678888888888876 79987 89999998763 3 46789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDL 635 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 635 (861)
..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|..+|+...+. .|. ...|.....+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 9999999999999999999999999 56753 47888888888999999999999998833 333 2333332222
Q ss_pred -hhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHHcCCh
Q 002975 636 -LGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA----AHILLSNLYASAGHW 708 (861)
Q Consensus 636 -~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~L~~~y~~~g~~ 708 (861)
+...|+.++|.++|++.. ..| ++.+|..++......|+.+.|..+++++++..|.++. .+..........|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999763 334 6789999999999999999999999999999887765 666777888889999
Q ss_pred hHHHHHHHHHHh
Q 002975 709 EYVANIRKRMKE 720 (861)
Q Consensus 709 ~~a~~~~~~m~~ 720 (861)
+.+.++.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888866
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-13 Score=155.24 Aligned_cols=350 Identities=16% Similarity=0.068 Sum_probs=292.3
Q ss_pred CcccHHHHHHHHHh----cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcc----cCChHHHHHHHHHHHHcCCCCC
Q 002975 351 NVMSWTAIITGYVQ----SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGN----LLDSNVAEQVYTHAVKRGRALD 422 (861)
Q Consensus 351 ~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 422 (861)
+..++..+...|.. .++ .++|+..|++..+.| +...+..+-..+.. .++.++|.+.+....+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 45556666666666 677 999999999998764 45666667777776 899999999999998876 5
Q ss_pred cchhhHHHHHHHH----cCCHHHHHHHHHhcCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHhhcCCCCCHHHHH
Q 002975 423 DCVGNSLISMYAR----SGRMEDARKAFESLFEK-NLVSYNTMVDAYAK----NLNSEKAFELLHEIEDTGVGTSAYTFA 493 (861)
Q Consensus 423 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 493 (861)
...+..|..+|.. .+++++|.+.|++..+. +...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677778889988 88999999999987544 55678888888887 789999999999998875 677788
Q ss_pred HHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHH
Q 002975 494 SLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITG 564 (861)
Q Consensus 494 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 564 (861)
.+...+.. .++.++|.+.+....+.| +...+..|..+|.. .+++++|...|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877 899999999999998876 56778888889986 8999999999998764 566788888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 565 FAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA-----GLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 565 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998865 455677788888777 8999999999998743 2 45667778888
Q ss_pred hhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----
Q 002975 636 LGRSG---SLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS---- 704 (861)
Q Consensus 636 ~~r~g---~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~---- 704 (861)
|.+.| ++++|++++++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 899999999987545678899999999988 899999999999999864 68899999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 002975 705 AGHWEYVANIRKRMKERN 722 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~~~ 722 (861)
.+++++|.+.+++..+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999888755
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-16 Score=165.87 Aligned_cols=274 Identities=11% Similarity=0.033 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH-HHHHHhhcCC-CC--CHHHHHHHHHHhhcccchHHHHHHH
Q 002975 437 GRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE-LLHEIEDTGV-GT--SAYTFASLLSGASSIGAIGKGEQIH 512 (861)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~ 512 (861)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555433322 3445688999998 8887654321 11 3456778888999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002975 513 ARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN 589 (861)
Q Consensus 513 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (861)
..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC
Confidence 9999875 56788999999999999999999999998763 46789999999999999999999999999994 454
Q ss_pred hH-HHHH---------------HHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 590 GI-TYIA---------------VLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 590 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
.. .+.. .+..+...|++++|..+|+.+.+...-.++...+..+..+|.+.|++++|++.++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 2211 2334448999999999999998554333357889999999999999999999999873
Q ss_pred --CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 --LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+.+..+|..++..+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999999999999999999999998865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-15 Score=151.11 Aligned_cols=273 Identities=10% Similarity=-0.009 Sum_probs=210.9
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHH
Q 002975 396 KACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFE 475 (861)
Q Consensus 396 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 475 (861)
+-....|++..|....+.+..............+..+|...|++++|...++....++..++..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34456789999998877654332111123445678899999999999998887655566788888999999999999999
Q ss_pred HHHHHhhcCCCCC-HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--
Q 002975 476 LLHEIEDTGVGTS-AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-- 552 (861)
Q Consensus 476 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 552 (861)
.++++...+..|+ ...+..+..++...|++++|.+.+.. +.+...+..++.+|.+.|++++|.+.|+++.+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998776564 55566667889999999999999987 56788999999999999999999999999874
Q ss_pred CCchHHHHHH----HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhH
Q 002975 553 RNVISWTSMI----TGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEH 628 (861)
Q Consensus 553 ~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 628 (861)
|+.. ...+. ..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|...|++..+. .
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~----- 230 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D----- 230 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-----
Confidence 5432 22333 3334558999999999999996 2445778889999999999999999999887732 1
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTEL-GKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+.++.+|..++..+...|+.+. +...++++++++|+++.+. +++.+.+.
T Consensus 231 --------------------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~ 280 (291)
T 3mkr_A 231 --------------------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKEND 280 (291)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHH
Confidence 2256677888888888887754 6788899999999887654 45666666
Q ss_pred hhHHHHH
Q 002975 708 WEYVANI 714 (861)
Q Consensus 708 ~~~a~~~ 714 (861)
++++..-
T Consensus 281 fd~~~~~ 287 (291)
T 3mkr_A 281 FDRLVLQ 287 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=162.64 Aligned_cols=230 Identities=10% Similarity=0.024 Sum_probs=196.4
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHH
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITG 564 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 564 (861)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557888889999999999999999999876 56788999999999999999999999998873 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGI-----------TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 45422 223457889999999999999999986543333678899999
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+..+|..++.++...|+++.|+..++++++++|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 3446889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 002975 712 ANIRKRMKE 720 (861)
Q Consensus 712 ~~~~~~m~~ 720 (861)
.+.++++.+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998866
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-15 Score=156.80 Aligned_cols=258 Identities=9% Similarity=-0.074 Sum_probs=193.1
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|.+.+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666666543 2345566666666666777777777777666654 44566777777777
Q ss_pred HccCCHHHHHHHHHhccC--C-CchHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED--R-NVISWTSM--------------IT-GFAKHGFAARALEIFYKMLADGIKPNGITYIAV 596 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 596 (861)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777776653 2 22233332 22 3677889999999999998853 2256788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 674 (861)
...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999987432 2346778889999999999999999998863 334678999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 675 ELGKHAAEMILEQDPQ------------DPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p~------------~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999988763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=159.51 Aligned_cols=331 Identities=12% Similarity=0.031 Sum_probs=200.9
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHcC----C--C-CCcchhhHHHHHHHHc--CCHHHHHHHHHhcC--CC-Cee
Q 002975 388 HFTFASVLKACGNLLDSNVAEQVYTHAVKRG----R--A-LDDCVGNSLISMYARS--GRMEDARKAFESLF--EK-NLV 455 (861)
Q Consensus 388 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~--~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~--~~-~~~ 455 (861)
..+|..+..++...|++++|...++.+.+.. - . ....++..+..++.+. +++++|.+.|++.. .| +..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 3456666666666666666666666554421 0 1 1122344444444443 45788888887763 23 334
Q ss_pred hHHHHHHH---HHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 456 SYNTMVDA---YAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 456 ~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
.+..+... +...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++...+.. +.+..++.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHH
Confidence 44444443 344677788888888777643 2344455544444433 456778888888887765 55677788
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCC
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAK-------------------HGFAARALEIFYKMLADGI 586 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~ 586 (861)
.+...|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-- 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 888888888999999888887763 3 44566666655543 23467888888888884
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh--hHHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 002975 587 KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM--EHYACMVD-LLGRSGSLTEALEFIRSM-PLSADVLVW 661 (861)
Q Consensus 587 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~-~~~r~g~~~eA~~~~~~~-~~~p~~~~~ 661 (861)
.|+ ..++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|+.++|++.+++. ...|+...+
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 454 557888899999999999999999998732 222221 12333333 345789999999999886 356664433
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEE
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWI 732 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 732 (861)
.. ..+.++..+++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 409 ~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 22 234556778899999999999999999999999999999999998888666555566664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-13 Score=153.02 Aligned_cols=416 Identities=12% Similarity=0.091 Sum_probs=264.1
Q ss_pred CCchhHHHHHHHHhhhCCCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 002975 213 DSDVCVGCALIDMFVKGSVDLESAYKVFDKMTE--K-NTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGV 289 (861)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 289 (861)
|.+...|..++. +.+ .|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...+...
T Consensus 10 P~~~~~w~~l~~-~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 667778888887 466 7888888888888765 3 4556888888888888888888888888765 3565544444
Q ss_pred HHHH-hccCCchHHHH----HHHHHHHh-CCCC-ccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 002975 290 VSAC-SELELFTSGKQ----LHSWAIRT-GLAL-DVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGY 362 (861)
Q Consensus 290 l~a~-~~~~~~~~a~~----i~~~~~~~-g~~~-~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 362 (861)
+... ...|+.+.+++ +++.+++. |..+ +..+|...+....+... ... +
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~------------------~~~-------~ 140 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA------------------VGS-------Y 140 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC------------------CSS-------T
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC------------------ccc-------H
Confidence 4322 23456665554 55555543 4433 23445555544433100 000 0
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCCh---hhHHHHHHH---h----------cccCChHHHHHHHHHHHHcCCCCCcchh
Q 002975 363 VQSGGRDKEAVKLFSDMIQGQVAPNH---FTFASVLKA---C----------GNLLDSNVAEQVYTHAVKRGRALDDCVG 426 (861)
Q Consensus 363 ~~~g~~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a---~----------~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 426 (861)
...|+ .++|..+|++..+. |+. ..|...... . ...+++..|..++.....
T Consensus 141 ~~~~~-~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~---------- 206 (530)
T 2ooe_A 141 AENQR-ITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET---------- 206 (530)
T ss_dssp THHHH-HHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH----------
T ss_pred HHHhH-HHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH----------
Confidence 11233 44555555554441 211 111111000 0 011222333333222110
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhc---CCCC--------eehHHHHHHHHHhc----CCh----hHHHHHHHHHhhcCCCC
Q 002975 427 NSLISMYARSGRMEDARKAFESL---FEKN--------LVSYNTMVDAYAKN----LNS----EKAFELLHEIEDTGVGT 487 (861)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p 487 (861)
..+.++.. ..|+ ...|...+.-...+ ++. ++|..+|++.... .+-
T Consensus 207 ---------------~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~ 270 (530)
T 2ooe_A 207 ---------------VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH 270 (530)
T ss_dssp ---------------HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred ---------------HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence 00111110 0111 12344444332222 222 3677888887765 234
Q ss_pred CHHHHHHHHHHhhc-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-
Q 002975 488 SAYTFASLLSGASS-------IGAIG-------KGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED- 552 (861)
Q Consensus 488 ~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 552 (861)
+...|......+.+ .|+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56677776666654 68876 8899999888632355788999999999999999999999998873
Q ss_pred -CC-c-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 553 -RN-V-ISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSA-CSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 553 -~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
|+ . ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...+.. +...|+.++|..+|+...+.. +.+..
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~ 426 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPE 426 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHH
Confidence 33 2 47999999999999999999999999984 443 3334333322 336899999999999988554 23567
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+..+++++.+.|+.++|..+|++.. ..|+ ..+|...+.....+|+.+.+..+.+++.+..|++
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 88999999999999999999999873 2332 5589999999999999999999999999999853
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=176.74 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=102.1
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 002975 520 FESNHCIYNALISMYSRCANVEAAFQVFKEME-------DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGIT 592 (861)
Q Consensus 520 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 592 (861)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456678888888888888888888886653 47888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 593 YIAVLSACSHAGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 593 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
|+++|.++++.|. .++|.++|++|. ..|+.||..+|++++....|.+-++...++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 8888888888887 467888888887 6688888888888887777765555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-16 Score=176.22 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=94.9
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
.+||+||++|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~Gl 175 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLGW 175 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHHH
Confidence 46777777777777777777777665432 1224455555555555555
Q ss_pred HccCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 002975 535 SRCANVEAAFQVFKEME----DRNVISWTSMITGFAKHGFA-ARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 609 (861)
++.|++++|.++|++|. .||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+.++..
T Consensus 176 ck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 55555555555555554 36666777777777777774 67888999999999999999999888777665444333
Q ss_pred HHHHHHHHhhcCCC----CChhHHHHHHHHhhhcC
Q 002975 610 WKHFRSMYDEHGIV----QRMEHYACMVDLLGRSG 640 (861)
Q Consensus 610 ~~~~~~m~~~~~~~----p~~~~~~~l~~~~~r~g 640 (861)
+++...+... |...+..-|.++|.+.+
T Consensus 256 ----rkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ----HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----GGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 3333333222 11334445667777665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=145.03 Aligned_cols=185 Identities=11% Similarity=0.042 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHH----------
Q 002975 428 SLISMYARSGRMEDARKAFESLF---EKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFA---------- 493 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---------- 493 (861)
.+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.... |+.. .+.
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHH
Confidence 33444444444444444444431 1233445555555555555555555555555432 1111 111
Q ss_pred ---HHHH--HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 494 ---SLLS--GASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 494 ---~ll~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
.+.. .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1102 2556667777777777766654 34566666677777777777777777766542 3445666666667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+.+.
T Consensus 217 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777777777777766663 33 34556666666666666666666666665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=139.32 Aligned_cols=215 Identities=10% Similarity=0.000 Sum_probs=153.5
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C----C----chHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R----N----VISWTSM 561 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 561 (861)
+..+...+...|++++|...+..+++.. .+...+..+...|...|++++|.+.|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444555555555555555555544 4555666666666666666666666665542 1 1 4566777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG 640 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g 640 (861)
...|...|++++|+..|++..+ ..|+. ..+...|++++|...++.+.. ..| +...+..+...+.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 7777777788888887777777 34553 234456677788887777763 233 3456677777888888
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 641 SLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 641 ~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++|.+.++++. .+.+..+|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888887763 34467888889999999999999999999999999999999999999999999999999998877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=139.02 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=154.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAV 596 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 596 (861)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55677888888899999999999999998764 3567888899999999999999999999998 4565 5678888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 002975 597 LSACSHA-----------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSADVLVWRT 663 (861)
Q Consensus 597 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ 663 (861)
..++... |++++|...|++..+. .| +...+..+..+|...|++++|++.++++. ...++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889888 9999999999998843 45 45678888999999999999999998863 1277889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+..++...|++++|+..++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887744
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-13 Score=148.21 Aligned_cols=388 Identities=12% Similarity=0.009 Sum_probs=206.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-ccchHHHHHH
Q 002975 248 TVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLAL-DVCVGCSLVD 326 (861)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~ 326 (861)
...||.|...+...|++++|++.|++-.+. ..........+ ...+++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 456888888888888888888888775431 00000000011 1234555666
Q ss_pred HHHhCCCCCCHHHHHHHHhcc-------CCC----CcccHHHHHHHHHhc--CCChHHHHHHHHHHhhCCCCCChh-hHH
Q 002975 327 MYAKCTVDGSVDDSRKVFDRM-------LDH----NVMSWTAIITGYVQS--GGRDKEAVKLFSDMIQGQVAPNHF-TFA 392 (861)
Q Consensus 327 ~y~~~g~~g~~~~A~~~~~~~-------~~~----~~~~~~~li~~~~~~--g~~~~~A~~l~~~m~~~g~~p~~~-t~~ 392 (861)
.|...|+ +++|...+++. ..+ ...+++.+..++... ++ +++|++.|++..+. .|+.. .+.
T Consensus 103 ~y~~~g~---~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-y~~A~~~~~kal~~--~p~~~~~~~ 176 (472)
T 4g1t_A 103 VYYHMGR---LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ-NERAKVCFEKALEK--KPKNPEFTS 176 (472)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HHHHcCC---hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6666655 77776666544 221 123444444444443 34 78888888887763 45433 333
Q ss_pred HHHHH---hcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH----cCCHHHHHHHHHhcC---CCCeehHHHHHH
Q 002975 393 SVLKA---CGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYAR----SGRMEDARKAFESLF---EKNLVSYNTMVD 462 (861)
Q Consensus 393 ~ll~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~ 462 (861)
.+..+ +...++.+.|.+.+...++.. +.+..++..+...+.. .|+.++|.+.+++.. ..+...+..+..
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~ 255 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33322 344566677777777777654 3334444444444433 355667777776652 234456777777
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
.|...|++++|+..|++..+.. +-+..++..+...+...+....+ .. ...........+..+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHH
Confidence 7777777777777777776542 22334444443333221110000 00 0000011111233567
Q ss_pred HHHHHHhcc---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 002975 543 AFQVFKEME---DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG--ITYIAVLS-ACSHAGLISEGWKHFRSM 616 (861)
Q Consensus 543 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m 616 (861)
|...|+... ..+..+|..+...|...|++++|+..|++.++....|.. ..+..+.. ...+.|+.++|+..|++.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665 345678899999999999999999999999985433322 12333333 345789999999999988
Q ss_pred HhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 617 YDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-P-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 617 ~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
. .+.|+....... ++.+.+++++. . .+.++.+|..|+.++...|+.++|+..+++++++.|.+|.+
T Consensus 399 l---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 399 V---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp H---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred H---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 7 345654332222 23333444332 1 34467789999999999999999999999999999999887
Q ss_pred HHHHH
Q 002975 695 HILLS 699 (861)
Q Consensus 695 ~~~L~ 699 (861)
..-+|
T Consensus 467 ~~~~G 471 (472)
T 4g1t_A 467 SSWNG 471 (472)
T ss_dssp -----
T ss_pred hhcCC
Confidence 76654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=138.99 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=189.4
Q ss_pred hcCChhHHHHHHHHHhhcCCC---CCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVG---TSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEA 542 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 542 (861)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888765321 235567777888888888888888888888875 5578889999999999999999
Q ss_pred HHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002975 543 AFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619 (861)
Q Consensus 543 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 619 (861)
|.+.|++..+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998773 4678899999999999999999999999998 5576555555556667789999999999887744
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 620 HGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD-----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 620 ~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
. +++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|+.+.|...++++++++|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 3 2333334 37777888888999999998863 2221 578888999999999999999999999999998855
Q ss_pred hHHHHHHHHHHcCChhHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999987654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=136.85 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=184.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC--CCc----hhHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF--ESN----HCIYNA 529 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 529 (861)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46667777778888888888888887766 6777777888888888888888888887766431 111 577888
Q ss_pred HHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISE 608 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 608 (861)
+...|.+.|++++|...|++..+.+.. ...+...|++++|+..++++.. ..|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 889999999999999999887642211 2456677889999999999988 4564 5578888889999999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Q 002975 609 GWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILE 686 (861)
Q Consensus 609 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 686 (861)
|...|+.+.+.. +.+...+..+...|.+.|++++|++.++++. .+.+..+|..+..++...|+.+.|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988433 2356778889999999999999999998873 344578899999999999999999999999999
Q ss_pred cC------CCCCchHHHHHH
Q 002975 687 QD------PQDPAAHILLSN 700 (861)
Q Consensus 687 ~~------p~~~~~~~~L~~ 700 (861)
++ |++...+..|..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 99 877776666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-12 Score=128.61 Aligned_cols=252 Identities=13% Similarity=0.031 Sum_probs=159.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC--HHHHHHHHHHhh
Q 002975 426 GNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS--AYTFASLLSGAS 500 (861)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~ 500 (861)
.......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+..|+ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777777777777776632 2344677777778888888888888887776332221 234666666777
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776654 44556777777777777777777777777663 2345566665233334577777777
Q ss_pred HHHHHHcCCCCC-hHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 002975 578 FYKMLADGIKPN-GITYIAVLSACSHAGL---ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP 653 (861)
Q Consensus 578 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~ 653 (861)
|+++.+ ..|+ ...+..+..++...|. +++|...|+.+.+...-.|+.. -
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------ 217 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------ 217 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------------------
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------------------
Confidence 777777 3454 4455555666655555 5556665555542221112110 0
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 654 LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 654 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
..-..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+
T Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888999999999999999999999999888888777665544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=138.08 Aligned_cols=244 Identities=11% Similarity=0.104 Sum_probs=199.8
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc-hHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA-IGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
..|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...++.+++.. +.+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 457777888888899999999999888653 3356677888888888886 999999999998876 5678889999999
Q ss_pred HHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHh-cCCHHH
Q 002975 534 YSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSH-AGLISE 608 (861)
Q Consensus 534 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~ 608 (861)
|.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998873 4678999999999999999999999999999 5565 6688888888888 666577
Q ss_pred H-----HHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC-------
Q 002975 609 G-----WKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG--SLTEALEFIRSMPLSA-DVLVWRTFLGACRVHG------- 672 (861)
Q Consensus 609 a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 672 (861)
| +..|++..+ +.| +...|..+..+|.+.| ++++|+++++++...| +..++..|+..+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 477887773 345 4567888888888888 6899999998875445 4678888888888764
Q ss_pred -C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHHc
Q 002975 673 -D-TELGKHAAEMI-LEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 673 -~-~~~a~~~~~~~-~~~~p~~~~~~~~L~~~y~~~ 705 (861)
+ .+.|+.+++++ .+++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 999999999998888766653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-12 Score=128.37 Aligned_cols=196 Identities=12% Similarity=0.009 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45666777777788888888888877652 355677777888888888888888888887742 22456777777888
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
...|++++|..+|+.+.+ .+..| +...+..+...|.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888773 33444 34567777788888888888888887763 233577888888888888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...++++++..|++...+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998888888888888888999999999998888887663
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-12 Score=124.19 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=145.0
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455667777777777788777777776652 345677777777788888888888888877742 224556777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH
Q 002975 599 ACSHA-GLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDT 674 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 674 (861)
.+... |++++|..+++.+.+ .+..|+ ...+..+...+.+.|++++|++.++++. .+.+...|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77788 888888888887774 323333 4566777778888888888888877653 233467777888888888888
Q ss_pred HHHHHHHHHHhccCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDP-QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p-~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.|...++++++..| +++..+..++.++...|++++|...++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888888877764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-12 Score=139.88 Aligned_cols=343 Identities=10% Similarity=0.044 Sum_probs=202.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Q 002975 358 IITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---NVAEQVYTHAVKRGRALDDCVGNSLISMYA 434 (861)
Q Consensus 358 li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~ 434 (861)
+...+.+.|+ +++|+++|++..+.|- ...+..+-..+...|+. ++|.+.+....+. +...+..|..++.
T Consensus 9 la~~~~~~g~-~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGD-TVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 4556667777 8888888888877652 22333333444455666 7888888777654 4455556666454
Q ss_pred HcC-----CHHHHHHHHHhcCCC-CeehHHHHHHHHHhcCChh---HHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccch
Q 002975 435 RSG-----RMEDARKAFESLFEK-NLVSYNTMVDAYAKNLNSE---KAFELLHEIEDTGVGTSAYTFASLLSGASSIGAI 505 (861)
Q Consensus 435 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 505 (861)
..+ +.++|...|++..++ +...+..|...|...+..+ ++.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 444 677888888776443 4456777777777665433 34444444444443 33444555555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC---CHHHHHHHHHhccC---CCchHHHHHHHHHHhc----CChHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA---NVEAAFQVFKEMED---RNVISWTSMITGFAKH----GFAARAL 575 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 575 (861)
+++......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 433333332322222334447778888888888 78888888887653 2333346666666544 6788888
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC-----CHHHHHH
Q 002975 576 EIFYKMLADGIKPNGITYIAVLSA-C--SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG-----SLTEALE 647 (861)
Q Consensus 576 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g-----~~~eA~~ 647 (861)
.+|++.. .| +...+..+... + ...+++++|..+|++.. +.| +...+..|..+|. .| ++++|++
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 32 34455556555 3 45778888888888876 333 5556666766666 45 8888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIRKRMK 719 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~~~m~ 719 (861)
+|++.. ..++..+..|...|.. ..|.++|...++++.+ +.++.+...|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 888887 5567777777766654 2388888888888776 4567778888888875 457888888888777
Q ss_pred hCCC
Q 002975 720 ERNL 723 (861)
Q Consensus 720 ~~~~ 723 (861)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 6554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-11 Score=124.66 Aligned_cols=214 Identities=8% Similarity=-0.051 Sum_probs=121.1
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHHHHh----
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITGFAK---- 567 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 567 (861)
..+...|++++|.+.+....+. .+...+..+..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCc
Confidence 3333334444444444444331 123344444555555 5555555555554432 244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----c
Q 002975 568 HGFAARALEIFYKMLADGIKPNGITYIAVLSACSH----AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----S 639 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~ 639 (861)
.|++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..+|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCC
Confidence 566666666666665543 44455555555555 5666666666665552 22 33444555555555 6
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHH
Q 002975 640 GSLTEALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYV 711 (861)
Q Consensus 640 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a 711 (861)
+++++|++.+++.....++..+..+...+.. .++.++|...++++++.+| +..+..|+.+|.. .|++++|
T Consensus 164 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 164 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 6666666666655322345566666666666 6777777777777777655 5667777777777 7777777
Q ss_pred HHHHHHHHhCC
Q 002975 712 ANIRKRMKERN 722 (861)
Q Consensus 712 ~~~~~~m~~~~ 722 (861)
.+.+++..+.|
T Consensus 242 ~~~~~~a~~~~ 252 (273)
T 1ouv_A 242 IENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 77777665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=129.91 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSAC 600 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 600 (861)
...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444555555555555555554431 234455555555555556666666665555532 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 55666666666665555221 1233445555555556666666665555542 2234556666777777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 679 HAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..++++++++|+++..+..++.+...
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhh
Confidence 77777777777776666665554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=136.10 Aligned_cols=349 Identities=11% Similarity=0.055 Sum_probs=171.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC-----CChH
Q 002975 296 LELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSG-----GRDK 370 (861)
Q Consensus 296 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 370 (861)
.|++++|.+++..+.+.| +...+..|-.+|...|+..+.++|...|++..+.+...+..+...+...+ + .+
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~-~~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE-HH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH-HH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC-HH
Confidence 344444444444444443 12222333334444444111267777776665555555655555444444 3 56
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhcccCCh---HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcC----CHHHHH
Q 002975 371 EAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDS---NVAEQVYTHAVKRGRALDDCVGNSLISMYARSG----RMEDAR 443 (861)
Q Consensus 371 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~ 443 (861)
+|+..|++..+.|... .+..+...+...+.. ..+.+.+......| +......|..+|...+ ..+++.
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 6777777766654322 333333333322221 12223333333222 2233334444444444 223333
Q ss_pred HHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc---chHHHHHHHHHHHHhCC
Q 002975 444 KAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG---AIGKGEQIHARIIKSGF 520 (861)
Q Consensus 444 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~ 520 (861)
.+++.....++..+. .+...+...| +.++|.+.+....+.|
T Consensus 166 ~~~~~a~~~~~~a~~-----------------------------------~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 166 RICKAALNTTDICYV-----------------------------------ELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp HHHHHHTTTCTTHHH-----------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCHHHHH-----------------------------------HHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 333333333333444 4444444444 5555555555555555
Q ss_pred CCchhHHHHHHHHHHcc----CCHHHHHHHHHhccCCCchHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChHHH
Q 002975 521 ESNHCIYNALISMYSRC----ANVEAAFQVFKEMEDRNVISWTSMITG-F--AKHGFAARALEIFYKMLADGIKPNGITY 593 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 593 (861)
+++...+..|..+|... +++++|...|+.....+...+..|... | ...|++++|+.+|++..+.| +...+
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444445556666444 577777777776663355666666665 3 35678888888888877765 45566
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002975 594 IAVLSACSHAG-----LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTF 664 (861)
Q Consensus 594 ~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~l 664 (861)
..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..++++|.++|++....-++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 66666665 45 7888888887654 3345566666666655 34788888888876433344455556
Q ss_pred HHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 665 LGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 665 l~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
...|.. .+|.++|...++++.+..+. .+...|..+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l 399 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQL 399 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 555543 34888888888888887653 334444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=135.42 Aligned_cols=224 Identities=9% Similarity=0.073 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC-HHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN-VEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
..|..+...+...|++++|.+.+..+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888999999999999999986 6678899999999999997 9999999998873 4678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh-cCCH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR-SGSL 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r-~g~~ 642 (861)
...|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..|+++.+. .| +...|..+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 5665 678999999999999999999999999843 44 56788888899988 6765
Q ss_pred HHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHHhC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-------
Q 002975 643 TEA-----LEFIRSMP-LSA-DVLVWRTFLGACRVHG--DTELGKHAAEMILEQDPQDPAAHILLSNLYASAG------- 706 (861)
Q Consensus 643 ~eA-----~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g------- 706 (861)
++| ++.++++. ..| +...|..+...+...| +.+.|+..++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47777652 344 6789999999998888 689999999998 999999999999999999985
Q ss_pred --ChhHHHHHHHHH-Hh
Q 002975 707 --HWEYVANIRKRM-KE 720 (861)
Q Consensus 707 --~~~~a~~~~~~m-~~ 720 (861)
..++|.++++.+ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358899999987 44
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=123.83 Aligned_cols=205 Identities=12% Similarity=0.030 Sum_probs=138.3
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..|..+...|...|++++|++.|+++... . +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~-~~~~~~~~~la~~~ 81 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------D-PSSADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------C-CChHHHHHHHHHHH
Confidence 44555556666666666666666665543 2 23445555666666
Q ss_pred HccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHH
Q 002975 535 SRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGW 610 (861)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 610 (861)
.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+.+|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665542 2455666667777777777777777777766333443 446666777777777777777
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 611 KHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 611 ~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
.+|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++. .+.+...|..+...+...|+.+.|...+++++++.
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777776332 2235667777777888888888888877752 33456778888888999999999999999999999
Q ss_pred CCCCchHHH
Q 002975 689 PQDPAAHIL 697 (861)
Q Consensus 689 p~~~~~~~~ 697 (861)
|+++.....
T Consensus 240 p~~~~~~~~ 248 (252)
T 2ho1_A 240 PGSLEYQEF 248 (252)
T ss_dssp TTSHHHHHH
T ss_pred CCCHHHHHH
Confidence 988766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=122.14 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=140.2
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHh
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAK 567 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 567 (861)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33344444444455555555554444433 33455666666777777777777777766542 345667777777777
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 568 H-GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
. |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..+|+.+.+.. +.+...+..+..++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHH
Confidence 7 788888888877777333343 4566777777788888888888887776332 22356677777888888888888
Q ss_pred HHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 646 LEFIRSMP--LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 646 ~~~~~~~~--~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
.+.++++. .+ .+...|..+...+...|+.+.+...++.+.+.+|+++.....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 88887752 23 46667777777788999999999999999999999887766553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=124.72 Aligned_cols=226 Identities=10% Similarity=-0.039 Sum_probs=177.4
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHH
Q 002975 453 NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYN 528 (861)
Q Consensus 453 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (861)
+..++..+...|...|++++|++.|++..+. -+..++..+...+.. .++.++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445666667777777888888888777762 344566667777777 788888888888887765 667777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHhccC-CCchHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 002975 529 ALISMYSR----CANVEAAFQVFKEMED-RNVISWTSMITGFAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSA 599 (861)
Q Consensus 529 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 599 (861)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888888 8899999988887764 466788888888888 899999999999998865 45667777778
Q ss_pred HHh----cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 002975 600 CSH----AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTFLGACRV- 670 (861)
Q Consensus 600 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~- 670 (861)
+.. .+++++|..+|+...+. .+...+..+..+|.+ .+++++|++.+++.....+...+..|...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 877 88999999999988743 245677778888888 99999999999887433347778888888888
Q ss_pred ---hCCHHHHHHHHHHHhccCCCC
Q 002975 671 ---HGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 671 ---~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.++.++|...++++++++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-12 Score=126.87 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777888889999999999999998864 356788899999999999999999999999853 235678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998543 3356778889999999999999999999873 34467889999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 677 GKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|+..++++++.+|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998876
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=139.51 Aligned_cols=261 Identities=10% Similarity=0.003 Sum_probs=178.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCH----HHHHHHHHHhhcccchHHHHHHHHHHHHh----C-CCCchhHHHH
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSA----YTFASLLSGASSIGAIGKGEQIHARIIKS----G-FESNHCIYNA 529 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 529 (861)
.+...+...|++++|+..|++....... +. ..+..+...+...|++++|...+..+++. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666554211 22 34555555666666666666666655432 1 1223456677
Q ss_pred HHHHHHccCCHHHHHHHHHhccC-----C----CchHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 002975 530 LISMYSRCANVEAAFQVFKEMED-----R----NVISWTSMITGFAKHGF-----------------AARALEIFYKMLA 583 (861)
Q Consensus 530 li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 583 (861)
+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77778888888888887776552 1 23467777788888888 8888888877655
Q ss_pred c----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 584 D----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 584 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
. +-.|. ..++..+...+...|++++|..+|++..+...-.++ ...+..+..+|...|++++|.+.++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 21222 346777888888888888888888887643221122 2367778888888999999888887652
Q ss_pred ---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 654 ---LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 654 ---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
... ...+|..+...+...|+.+.|...+++++++.++. ...+..++.+|...|++++|.+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14577788888999999999999999999875543 34788999999999999999999887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=125.77 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=154.7
Q ss_pred HHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc----hHHHHHHHHHHhcC
Q 002975 496 LSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNV----ISWTSMITGFAKHG 569 (861)
Q Consensus 496 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g 569 (861)
...+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|++..+ ++. .+|..+...|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334445555555555555555443 33455666777777777777777777776653 222 23777778888888
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
++++|+..|++..+. .| +..++..+...+...|++++|...|+...+ +.| +...+..+...+...+++++|.+
T Consensus 89 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp CHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888773 34 356777788888888888888888877762 244 34556666634444558888888
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHHhCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHHcCChhHHHHH
Q 002975 648 FIRSMP-LSA-DVLVWRTFLGACRVHGD---TELGKHAAEMILEQD---PQD-----PAAHILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 648 ~~~~~~-~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~L~~~y~~~g~~~~a~~~ 714 (861)
.++++. ..| +...|..+...+...|+ .+.|+..+++++++. |+. ...|..|+.+|...|++++|.+.
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887763 333 46777788888888888 888999999998875 442 25788899999999999999999
Q ss_pred HHHHHh
Q 002975 715 RKRMKE 720 (861)
Q Consensus 715 ~~~m~~ 720 (861)
+++..+
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=119.61 Aligned_cols=189 Identities=13% Similarity=0.032 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 002975 456 SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYS 535 (861)
Q Consensus 456 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 535 (861)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++.+++.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44444445555555555555555544331 2233344444444444444444444444444443 333444455555555
Q ss_pred cc-----------CCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 002975 536 RC-----------ANVEAAFQVFKEMED--R-NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS 601 (861)
Q Consensus 536 ~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 601 (861)
+. |++++|...|++..+ | +...|..+...|...|++++|+..|++.++.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 54 555555555555442 2 34455555555556666666666666655544 44455555555566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
..|++++|+..|+...+. .| +...+..+..++.+.|++++|++.+++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666555522 22 334445555555555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-12 Score=136.13 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=163.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCC-CchhHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS----GFE-SNHCIY 527 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 527 (861)
+......+...|++++|+..|++...... .+ ...+..+...+...|++++|...+..+.+. +.. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444455555555555555555554321 11 134445555555556666665555554322 111 124456
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGF--------------------AARALEIF 578 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 578 (861)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6667777777777777777766542 22 3366677777777777 77777777
Q ss_pred HHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 579 YKMLAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 579 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+..+|.+.|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 766542 11222 235667777777888888888887777643222222 235667777888888888888877
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHH
Q 002975 650 RSMP----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIR 715 (861)
Q Consensus 650 ~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~ 715 (861)
++.. ..++ ..++..+...+...|+++.|...+++++++.+.. ...+..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7652 1112 4567777788888888888888888888775543 456778888888888888888887
Q ss_pred HHHHh
Q 002975 716 KRMKE 720 (861)
Q Consensus 716 ~~m~~ 720 (861)
+...+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=128.96 Aligned_cols=260 Identities=12% Similarity=0.062 Sum_probs=179.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS----GFE-SNHCIYNAL 530 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 530 (861)
....+...|++++|+..|+++...... + ...+..+...+...|++++|.+.+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344555666666666666666554211 2 234555556666666666666666654332 211 224566777
Q ss_pred HHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCC--------------------hHHHHHHHHHH
Q 002975 531 ISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGF--------------------AARALEIFYKM 581 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 581 (861)
...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7888888888888888876652 22 2367777788888888 88888888776
Q ss_pred HHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 582 LAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 582 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+. +..|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...+.+.|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 21222 346777788888889999999888887643221122 236777888888999999998888775
Q ss_pred C----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 P----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 ~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
. ..++ ..++..+...+...|+.+.|...+++++++.|.. ...+..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2 1122 4577788888999999999999999999876543 347889999999999999999999887
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 330 ~~ 331 (338)
T 3ro2_A 330 LE 331 (338)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-12 Score=142.00 Aligned_cols=207 Identities=9% Similarity=-0.014 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH-HHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANV-EAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
++++.+.+....+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444433322 34667777778888888888 888888887652 3467888888888888888888888888
Q ss_pred HHHcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc--------CCH
Q 002975 581 MLADGIKPNGITYIAVLSACSHA---------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS--------GSL 642 (861)
Q Consensus 581 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~--------g~~ 642 (861)
.++ ..|+...+..+..++... |++++|...|++..+. .| +...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888 567777888888888888 8889999988888743 34 456777888888888 889
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 002975 643 TEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 643 ~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
++|++.++++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998873 344 7889999999999999999999999999999999999999999999999999999875543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=115.56 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=124.7
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACM 632 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 632 (861)
+...|..+...|...|++++|++.|++.++ ..|+ ..++..+..++.+.|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 445677777777777777777777777777 4454 4567777777777777777777777766322 2234455566
Q ss_pred HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
...+...+++++|.+.+++.. .+.+...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 677777788888877777653 334577888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 002975 711 VANIRKRMKER 721 (861)
Q Consensus 711 a~~~~~~m~~~ 721 (861)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99998877653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=136.51 Aligned_cols=290 Identities=12% Similarity=0.009 Sum_probs=169.9
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCC---cchhhHHHHHHHHcCCHHHHHHHHHhcCC-----C----CeehH
Q 002975 390 TFASVLKACGNLLDSNVAEQVYTHAVKRGRALD---DCVGNSLISMYARSGRMEDARKAFESLFE-----K----NLVSY 457 (861)
Q Consensus 390 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~ 457 (861)
.+......+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++... . ...+|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334444455556666666666666655431110 13444455555555555555555544311 0 11234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHc
Q 002975 458 NTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGF-ESNHCIYNALISMYSR 536 (861)
Q Consensus 458 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~ 536 (861)
..+...|...|++++|+..+++...... +.+- .....++..+...|..
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------hcccccchHHHHHHHHHHHHH
Confidence 4444444445555555554444432100 0010 0012345555566666
Q ss_pred cCC--------------------HHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 002975 537 CAN--------------------VEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI- 586 (861)
Q Consensus 537 ~g~--------------------~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 586 (861)
.|+ +++|.+.|++..+ .+ ..+|..+...|...|++++|+..|++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 666 6666666554431 11 23566777777778888888888777765310
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC----C
Q 002975 587 KPN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP----L 654 (861)
Q Consensus 587 ~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~ 654 (861)
.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.++++. .
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 236777777788888888888888776532211111 3466777788888888888888877652 1
Q ss_pred CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHHcCChhH
Q 002975 655 SAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 655 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~y~~~g~~~~ 710 (861)
.++ ..+|..+...+...|+++.|...+++++++.+. ...++..|+.+|...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 122 457778888999999999999999999987433 35677788999998887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=125.72 Aligned_cols=216 Identities=11% Similarity=-0.009 Sum_probs=179.5
Q ss_pred hcccchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHH
Q 002975 500 SSIGAIGKGEQIHARIIKSGF---ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAAR 573 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 573 (861)
...+++++|...+..+++... +.+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456899999999999988632 22567888999999999999999999998863 457899999999999999999
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 574 ALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 574 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
|+..|+++++. .| +...+..+...+...|++++|..+|+.+.+ +.|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999994 45 467889999999999999999999999984 3455555555566667889999999999765
Q ss_pred C--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 653 P--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ----DPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 653 ~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 334444443 677778888999999999999998774 3688999999999999999999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-11 Score=132.90 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=154.3
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCCc----chhhHHHHHHHHcCCHHHHHHHHHhcCCC---------CeehHHH
Q 002975 393 SVLKACGNLLDSNVAEQVYTHAVKRGRALDD----CVGNSLISMYARSGRMEDARKAFESLFEK---------NLVSYNT 459 (861)
Q Consensus 393 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ 459 (861)
.+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..+. ....|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666655311 11 24455555555556666655555544210 1123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccC
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSG-FESNHCIYNALISMYSRCA 538 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g 538 (861)
+...|...|++++|+..|++..... .+.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcC
Confidence 4445555555555555554443210 0001 0112334555556666666
Q ss_pred C-----------------HHHHHHHHHhccC-----C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC--
Q 002975 539 N-----------------VEAAFQVFKEMED-----R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN-- 589 (861)
Q Consensus 539 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-- 589 (861)
+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|++..+.... ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 6666666554431 1 1236666777777777777777777777653100 11
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC--
Q 002975 590 --GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD-- 657 (861)
Q Consensus 590 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~-- 657 (861)
..++..+...+...|++++|..+|+...+...-.. ....+..+..+|.+.|++++|.+.+++.. ..++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 22566777777788888888888777653321111 13456677778888888888888877652 1111
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Q 002975 658 --VLVWRTFLGACRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 658 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 689 (861)
..++..+...+...|+.+.|...+++++++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777788889999999999999999998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=140.26 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 632 (861)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34566666666677777777777777666 4554 44666666777777777777777766662 234 34566667
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
..+|.+.|++++|++.+++.. ..| +...|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777776652 344 577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002975 711 VANIRKRMK 719 (861)
Q Consensus 711 a~~~~~~m~ 719 (861)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-10 Score=114.78 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=163.4
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhh-------cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 002975 471 EKAFELLHEIEDTGVGTSAYTFASLLSGAS-------SIGAI-------GKGEQIHARIIKSGFESNHCIYNALISMYSR 536 (861)
Q Consensus 471 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 536 (861)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777542 334555555555554 34665 7888888888873224466788889999999
Q ss_pred cCCHHHHHHHHHhccC--C-Cch-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHH
Q 002975 537 CANVEAAFQVFKEMED--R-NVI-SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS-HAGLISEGWK 611 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 611 (861)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998774 3 333 78888888889999999999999998843 223444544433322 3689999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP----LSA--DVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
+|+...+... -+...|..+++.+.+.|++++|..+|+++. .+| ...+|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998885432 256778888889999999999999998873 244 46789999998999999999999999999
Q ss_pred ccCCCCCch
Q 002975 686 EQDPQDPAA 694 (861)
Q Consensus 686 ~~~p~~~~~ 694 (861)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-11 Score=123.75 Aligned_cols=199 Identities=12% Similarity=0.044 Sum_probs=119.2
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHccCC--------------------HHHHHHH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKSG--FE---SNHCIYNALISMYSRCAN--------------------VEAAFQV 546 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~--------------------~~~A~~~ 546 (861)
+..+...+...|++++|...+....+.. .. ....++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 3344444444455555554444433210 00 012345555566666666 6666666
Q ss_pred HHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 547 FKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI-KPN----GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 547 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
+++... .+ ...+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 654431 11 23566667777777777777777777665310 011 22666777777788888888887
Q ss_pred HHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHHH
Q 002975 613 FRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD----VLVWRTFLGACRVHGDTELGKHA 680 (861)
Q Consensus 613 ~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 680 (861)
++...+...-.++ ...+..+...|.+.|++++|.+.++++. ...+ ..+|..+...+...|+.+.|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7776532211111 3456677778888888888888877652 1111 44777888889999999999999
Q ss_pred HHHHhccCCC
Q 002975 681 AEMILEQDPQ 690 (861)
Q Consensus 681 ~~~~~~~~p~ 690 (861)
+++++++.++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=110.24 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLS 598 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 598 (861)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567788888999999999999999988763 45678888888999999999999999988884 444 556777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTEL 676 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 676 (861)
.+...++++++...+....+.. +.+...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+.++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888899999999988887432 2345677888889999999999999998863 34467899999999999999999
Q ss_pred HHHHHHHHhccCCCCC
Q 002975 677 GKHAAEMILEQDPQDP 692 (861)
Q Consensus 677 a~~~~~~~~~~~p~~~ 692 (861)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=128.66 Aligned_cols=240 Identities=11% Similarity=0.038 Sum_probs=124.5
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHhhc-------CCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-
Q 002975 455 VSYNTMVDAYAKNLNSEKAFELLHEIEDT-------GVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKS------GF- 520 (861)
Q Consensus 455 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~- 520 (861)
.+|..+...|...|++++|+.+|+++... .......++..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887753 22223445566666666777777777776666543 11
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------R----NVISWTSMITGFAKHGFAARALEIFYKMLAD----- 584 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 584 (861)
+....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+.+|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22344556666666666666666666665442 1 1234555556666666666666666665553
Q ss_pred -CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 002975 585 -GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH------GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA 656 (861)
Q Consensus 585 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p 656 (861)
+..|+ ..++..+...+...|++++|..+|+.+.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11222 2345555556666666666666666554210 00000000000
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
....+..+...+...+....+...++++.+..|.++.++..|+.+|...|++++|.+.++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111222223334444455555666666666666667777777777777777777666553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-08 Score=112.63 Aligned_cols=218 Identities=8% Similarity=-0.053 Sum_probs=166.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc
Q 002975 472 KAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGE-QIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550 (861)
Q Consensus 472 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 550 (861)
.+..+|++.... ++-+...|.....-+.+.|+.+.|. ++++..+... +.+...+-.++..+.+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777654 3446677777777777888888886 9999998753 567777888899999999999999999987
Q ss_pred cC-------------CC------------chHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhc-
Q 002975 551 ED-------------RN------------VISWTSMITGFAKHGFAARALEIFYKMLAD-GIKPNGITYIAVLSACSHA- 603 (861)
Q Consensus 551 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~- 603 (861)
.+ |. ...|...+....+.|..+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 63 21 236888888888899999999999999985 2 12233443333222333
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHhCCHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA----DVLVWRTFLGACRVHGDTELGK 678 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~ 678 (861)
++.+.|..+|+...+.++ -+...+...++.+...|+.+.|..+|++.. ..| ...+|..++..-..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 458999999999987653 344556788888999999999999999874 223 3468999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 002975 679 HAAEMILEQDPQDPAA 694 (861)
Q Consensus 679 ~~~~~~~~~~p~~~~~ 694 (861)
.+.+++.+..|+++..
T Consensus 562 ~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCCcHH
Confidence 9999999999987544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=127.23 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=170.5
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC--------C---CeehHHHHHHHHHhcCChhHHHHHHHHHhhc------C
Q 002975 422 DDCVGNSLISMYARSGRMEDARKAFESLFE--------K---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDT------G 484 (861)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 484 (861)
+..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345778899999999999999999998743 2 2356888899999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC----
Q 002975 485 V-GTSAYTFASLLSGASSIGAIGKGEQIHARIIKS------GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED---- 552 (861)
Q Consensus 485 ~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 552 (861)
- .....++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|.+.|+++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 233567888889999999999999999988764 22 23456788899999999999999999987753
Q ss_pred ---C-C---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 002975 553 ---R-N---VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR 625 (861)
Q Consensus 553 ---~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 625 (861)
+ + ..+|..+...|...|++++|+..|+++.+. .|+.. +..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-FGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-HC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-CCCCC---cchHHHHH----------------H
Confidence 1 2 347888999999999999999999999874 11100 00000 00000000 0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ 690 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 690 (861)
...+..+...+...+.+.+|...++... ..| +..+|..+..++...|+++.|...+++++++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112223334445566666666666653 223 4567888999999999999999999999998775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=124.42 Aligned_cols=194 Identities=9% Similarity=0.003 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC-----CC-----chHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED-----RN-----VISWTSMITGFAKHGFAARALEIFYKMLADG----IKPN- 589 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~- 589 (861)
.++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|+..|++.++.. -.+.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444444555555555555544444331 11 1244445555555555555555555544320 0000
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC-CCChhHHHHHHHHhhhcCCHHHHHHHHHhCC------CCCC-H
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDE---HGI-VQRMEHYACMVDLLGRSGSLTEALEFIRSMP------LSAD-V 658 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~------~~p~-~ 658 (861)
..++..+...+...|++++|..+|++..+. .+. +.....+..+...|.+.|++++|.+.+++.. ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 124445555555555555555555554421 011 1123344455555555555555555555431 0111 1
Q ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 659 LVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
..+..+...+...|+ .+.|...+++. ...|.....+..|+.+|...|++++|.+.+++..
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123334444555555 44444444444 2223334456667777777777777777666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-10 Score=127.74 Aligned_cols=177 Identities=10% Similarity=0.022 Sum_probs=156.4
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFA-ARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHF 613 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 613 (861)
.++++.+.+++... .+...|..+...|...|++ ++|+..|++.++ ..|+ ...|..+..++...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677766542 3667889999999999999 999999999999 4565 678999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhhhc---------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh--------CCH
Q 002975 614 RSMYDEHGIVQRMEHYACMVDLLGRS---------GSLTEALEFIRSMP--LSADVLVWRTFLGACRVH--------GDT 674 (861)
Q Consensus 614 ~~m~~~~~~~p~~~~~~~l~~~~~r~---------g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~--------g~~ 674 (861)
+... .+.|+...+..+..+|... |++++|++.++++. .+.+...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9988 4568888899999999999 99999999999873 344688999999999998 999
Q ss_pred HHHHHHHHHHhccCC---CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 675 ELGKHAAEMILEQDP---QDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 675 ~~a~~~~~~~~~~~p---~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999998866
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-10 Score=111.88 Aligned_cols=205 Identities=8% Similarity=0.029 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHH
Q 002975 487 TSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMIT 563 (861)
Q Consensus 487 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 563 (861)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777788888888899999999999888876436777777788888899999999998887763 2 4567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-h-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---hhHHHHH
Q 002975 564 GFAKHGFAARALEIFYKMLADGIKPN-G-------ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR---MEHYACM 632 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 632 (861)
.|...|++++|+..|++.++ ..|+ . ..|..+...+...|++++|...|+... .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 88899999999999998888 4454 3 346777778888888999999888877 44565 4566677
Q ss_pred HHHhhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 633 VDLLGRSGSL--TEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 633 ~~~~~r~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
..+|...|+. ++|..+ ...+...+..+. ....++++.|...++++++++|+++.+...|+.+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 333222 122333333332 344566899999999999999999988888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-10 Score=122.76 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=175.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh--CC----CCchhHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGV-GTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS--GF----ESNHCIYN 528 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 528 (861)
....+...|++++|+..|++....-. .+| ..++..+...+...|+.+.|...+....+. .. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556778888888888888765311 122 356777778888888888888888877653 11 11245778
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPN-GITYI 594 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 594 (861)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999987762 22 247888999999999999999999998873 33244 55788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEHG---IVQRMEHYACMVDLLGRSGS---LTEALEFIRSMPLSAD-VLVWRTFLGA 667 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~~~p~-~~~~~~ll~~ 667 (861)
.+...+...|++++|..++++..+... -......+..+..++...|+ +++|+.++++....|+ ..++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998874321 11222345678889999999 9999999999865544 3467778889
Q ss_pred HHHhCCHHHHHHHHHHHhccCC
Q 002975 668 CRVHGDTELGKHAAEMILEQDP 689 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p 689 (861)
+...|+.+.|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=112.74 Aligned_cols=189 Identities=9% Similarity=-0.042 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVL 597 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 597 (861)
|+..+..+...|.+.|++++|...|++..+ ++...|..+..+|...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666666677777777777665542 4555555566666667777777777776666 4454 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRM-----EHYACMVDLLGRSGSLTEALEFIRSMP-LSAD---VLVWRTFLGAC 668 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~---~~~~~~ll~~~ 668 (861)
.++...|++++|...|+...+...-.+.. ..|..+...+.+.|++++|++.++++. ..|+ ...|..+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66666677777777666666332111111 334555555555666666666655542 3343 23444444444
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.. .+...++++..+.+.+...|. .......+.+++|...+++..+
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 32 233344455555544433332 2233344455888888887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-10 Score=106.12 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=98.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACS 601 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~ 601 (861)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .| +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444455555555666666655555542 23344555555555555555555555555552 22 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002975 602 HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 602 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
..|++++|..+++.+.+. .+.+..+|..+...+...|+.+.|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555554444444311 2335667777777888888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 682 ~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-09 Score=114.40 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------ccCCH-------HHHHHHHHhccC---C-CchHHHHHHHHHHh
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYS-------RCANV-------EAAFQVFKEMED---R-NVISWTSMITGFAK 567 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 567 (861)
++|..+++++++.. +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 667888888888776 35885 999999998764 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-H-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhh-hcCCHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPNG-I-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLG-RSGSLTE 644 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-r~g~~~e 644 (861)
.|++++|..+|++.++ +.|+. . .|..++..+.+.|++++|..+|++..+.. +++...|.....+.. ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 66763 3 78999999999999999999999998322 223445544443322 3699999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ---DPQ-DPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|.++|+++. .+.+...|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|++++|..+.+.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 3346889999999999999999999999999995 554 5678889999999999999999999988
Q ss_pred HhCC
Q 002975 719 KERN 722 (861)
Q Consensus 719 ~~~~ 722 (861)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-08 Score=110.11 Aligned_cols=259 Identities=11% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCCHH----HHHHHHHHhhcccchHHHHHHHHHHHHhC--C-CC--chhHHHHHHH
Q 002975 462 DAYAKNLNSEKAFELLHEIEDTGVGTSAY----TFASLLSGASSIGAIGKGEQIHARIIKSG--F-ES--NHCIYNALIS 532 (861)
Q Consensus 462 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li~ 532 (861)
..+...|++++|...+++........+.. ++..+...+...|++++|.+.+....+.. . .+ ...++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666777777666665443222221 34444555666677777777766655421 0 11 1233566777
Q ss_pred HHHccCCHHHHHHHHHhccC-------C----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--ChHHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMED-------R----NVISWTSMITGFAKHGFAARALEIFYKMLADGIK--P--NGITYIAVL 597 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 597 (861)
.|...|++++|...+++... + ....+..+...|...|++++|...+++..+.... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 88888888888888876652 1 1235566777888889999999999888764221 1 124677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHH----HHHHHhhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYA----CMVDLLGRSGSLTEALEFIRSMP-LSAD-----VLVWRTFLG 666 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~----~l~~~~~r~g~~~eA~~~~~~~~-~~p~-----~~~~~~ll~ 666 (861)
..+...|++++|..+++.......-... ..... ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999887643222111 11111 23345778999999999998874 1221 335667778
Q ss_pred HHHHhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 667 ACRVHGDTELGKHAAEMILEQDPQD------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 667 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+...|+.+.|...++++++..+.. ...+..++.+|...|++++|.+.++...+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999999999999988764432 13677889999999999999998886654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-08 Score=111.23 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHcCCCCCcchHHHHHHHHhcCCChHHHHHHHHhc--CCCCCceeHHHHHHHHHhcCC---hhHHHHHH
Q 002975 94 FHLGKLVHSLLTRSKLEPNSVILNSLISLYSKCGDLNEANKIFKSM--GNKRDIVSWSSMISSYVNRGK---QVDAIHMF 168 (861)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 168 (861)
.......++..+...+ -|...|..++..+.+.+.++.++.+|+.+ ..+.....|...+..-.+.|. .+.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3344455666666665 48889999999998889999999999887 232455668888888888888 88999999
Q ss_pred HHHHHcC-CCCCcccHHHHHHHhcCCc
Q 002975 169 VEMLELG-FCPNEYCFSAVIRACSNTE 194 (861)
Q Consensus 169 ~~m~~~g-~~p~~~t~~~ll~~~~~~~ 194 (861)
++..... ..|+...|..-+.-..+.+
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~ 153 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKN 153 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhc
Confidence 8887653 2366666666555444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-09 Score=101.94 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887654 45788899999999999999999999998763 4667889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|..+++.+.+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence 99999999999999999853 3346677778888888888888888887776321
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+.+..+|..+...+...|+.+.|...++++++++|+++..
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 2245566777777778888888888888888887776544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-09 Score=116.25 Aligned_cols=219 Identities=11% Similarity=-0.011 Sum_probs=108.3
Q ss_pred hcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC-----chHHHHHHHH
Q 002975 500 SSIGAIGKGEQIHARIIKSG--FE---SNHCIYNALISMYSRCANVEAAFQVFKEMED-----RN-----VISWTSMITG 564 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 564 (861)
...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 44455555555555544320 00 1133445555555556665555555554431 11 2345555556
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCChhHHHHHHHHh
Q 002975 565 FAKHGFAARALEIFYKMLAD----GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH---GIVQRMEHYACMVDLL 636 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~~ 636 (861)
|...|++++|++.|++.++. +-.+. ..++..+..++...|++++|..+|++..+.. +.+.....+..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 66666666666666555542 11111 2345555556666666666666666554311 1111234455555666
Q ss_pred hhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 637 GRSGSLTEALEFIRSMP----L--SAD-VLVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
.+.|++++|.+.+++.. . .|. ...+..+...+...++ .+.|...+++. ...|+....+..|+.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 66666666666665541 1 122 2233333344444555 44444444441 122333345566777777777
Q ss_pred ChhHHHHHHHHHH
Q 002975 707 HWEYVANIRKRMK 719 (861)
Q Consensus 707 ~~~~a~~~~~~m~ 719 (861)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777766553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-09 Score=109.90 Aligned_cols=186 Identities=10% Similarity=-0.024 Sum_probs=119.8
Q ss_pred HHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI---KPN--GITYIAVLS 598 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 598 (861)
.|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++.++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666654432 11 34666777777777777777777777665210 111 246777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC---CH-----HHHHHH
Q 002975 599 ACSHA-GLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA---DV-----LVWRTF 664 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p---~~-----~~~~~l 664 (861)
.|... |++++|+..|++..+...-..+ ...+..+...|.+.|++++|++.+++.. ..| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887643211111 3457778888889999999998888752 222 21 156777
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--HcCChhHHHHHHHHH
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAA-----HILLSNLYA--SAGHWEYVANIRKRM 718 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~L~~~y~--~~g~~~~a~~~~~~m 718 (861)
+.++...|+++.|+..++++++++|+.... +..|...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 778889999999999999999999986654 334556664 457788888777543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-08 Score=106.36 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=171.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHh--CCC----CchhHHH
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGV-GTS----AYTFASLLSGASSIGAIGKGEQIHARIIKS--GFE----SNHCIYN 528 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~ 528 (861)
....+...|++++|+..|++...... .+| ..++..+...+...|+.+.|...+....+. ... ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678888888888888765321 122 346677777888888888888888877653 111 1255678
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChHHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPNGITYIA 595 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 595 (861)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 889999999999999999987653 22 347788899999999999999999998872 21222567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ---RMEHYACMVDLLGRSGS---LTEALEFIRSMPLSAD-VLVWRTFLGAC 668 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~~~p~-~~~~~~ll~~~ 668 (861)
+...+.+.|++++|..++++..+...-.. ....+..+..++...|+ +++|+.++++....|+ ...+..+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999885433222 23456677778888888 9999999999754444 34666788889
Q ss_pred HHhCCHHHHHHHHHHHhcc
Q 002975 669 RVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~ 687 (861)
...|+.+.|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=125.30 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=135.3
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 002975 521 ESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAV 596 (861)
Q Consensus 521 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 596 (861)
+.+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34567788888889899999999998887763 3567888888999999999999999999888 5676 5688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCC
Q 002975 597 LSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGD 673 (861)
Q Consensus 597 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 673 (861)
..++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.++++. ..| +...|..|+.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 8899999999999999988873 345 45778888889999999999999988863 444 57788899999999999
Q ss_pred HHHHHHHHHHHhccCCC
Q 002975 674 TELGKHAAEMILEQDPQ 690 (861)
Q Consensus 674 ~~~a~~~~~~~~~~~p~ 690 (861)
++.|+..+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999998886553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=110.81 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred HhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 684 ILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 684 ~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+....|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334455566777788888888888888887776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=103.51 Aligned_cols=204 Identities=9% Similarity=-0.023 Sum_probs=143.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-C---chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hH
Q 002975 522 SNHCIYNALISMYSRCANVEAAFQVFKEMED--R-N---VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN----GI 591 (861)
Q Consensus 522 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ 591 (861)
.+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHH
Confidence 4556667777788888888888888888764 3 2 456777788888888888888888888884 332 34
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 002975 592 TYIAVLSACSH--------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRT 663 (861)
Q Consensus 592 t~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ 663 (861)
.+..+..++.. .|++++|...|+.+.+.+.-.+. ....+..+....+.+ ...+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHH
Confidence 56667777777 88888888888888754422222 111111111111111 122566
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCcee
Q 002975 664 FLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASA----------GHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 664 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
+...+...|+++.|+..++++++..|+++ .++..++.+|... |++++|.+.++.+.+...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 78889999999999999999999999854 5788999999977 999999999998876321
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666777777666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=8e-09 Score=106.60 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=121.2
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 002975 438 RMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 517 (861)
++++|...|++. ...|...|++++|++.|.+...... +
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~ 69 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK-------------------------------K 69 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH-------------------------------H
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------H
Confidence 477777766654 5667777777777777776543210 0
Q ss_pred hCCCC-chhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 002975 518 SGFES-NHCIYNALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKH-GFAARALEIFYKMLADGI 586 (861)
Q Consensus 518 ~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 586 (861)
.|-++ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++.++.
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-- 147 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-- 147 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--
Confidence 01011 123444555555555555555555554431 11 23566666777775 7777777777777652
Q ss_pred CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHhhhcCCHHHHHHHHHhCC-
Q 002975 587 KPN-------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-----EHYACMVDLLGRSGSLTEALEFIRSMP- 653 (861)
Q Consensus 587 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~r~g~~~eA~~~~~~~~- 653 (861)
.|+ ..++..+...+...|++++|+.+|+...+...-.+.. ..|..+..++...|++++|+..+++..
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 2356667777777777777777777776322111111 145566667777777777777777752
Q ss_pred CCCCH------HHHHHHHHHHH--HhCCHHHHHHHHHHHhccCCCCCch
Q 002975 654 LSADV------LVWRTFLGACR--VHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 654 ~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
..|+. ..+..++.++. ..++++.|+..++++.+++|.+...
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 33331 12334455553 3456778888887787777755333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-07 Score=97.93 Aligned_cols=155 Identities=9% Similarity=-0.028 Sum_probs=65.9
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChh----hHHHHHHHhcccCChHHHHHHHHHHHHcCCCC-C----cchhhHHHH
Q 002975 361 GYVQSGGRDKEAVKLFSDMIQGQVAPNHF----TFASVLKACGNLLDSNVAEQVYTHAVKRGRAL-D----DCVGNSLIS 431 (861)
Q Consensus 361 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~----~~~~~~li~ 431 (861)
.+...|+ +++|...+++........+.. ++..+...+...|+++.|.+.+....+..... + ..++..+..
T Consensus 23 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445565 777777776665532111111 22333334445555555555555544321100 0 111233444
Q ss_pred HHHHcCCHHHHHHHHHhcCC-------C----CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCC----CCHHHHHHHH
Q 002975 432 MYARSGRMEDARKAFESLFE-------K----NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVG----TSAYTFASLL 496 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll 496 (861)
.|...|++++|...+++... + ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 45555555555555444311 0 0112333444445555555555555544332111 0122333344
Q ss_pred HHhhcccchHHHHHHHHHHH
Q 002975 497 SGASSIGAIGKGEQIHARII 516 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~ 516 (861)
..+...|++++|...++...
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-09 Score=100.44 Aligned_cols=135 Identities=13% Similarity=-0.033 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA 645 (861)
.|++++|+..+++... ..|+ ...+..+...|...|++++|++.|++..+. .| +...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 3444444444444333 2222 223333444444444444444444444421 22 233444444455555555555
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 646 LEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKH-AAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 646 ~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+..|++.. ..| ++.+|..+...+...|+.+.|.. .++++++++|+++.+|...+.++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55554432 233 57788889999999998876555 4699999999999999999999988885
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=101.69 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHHhccC-------C--
Q 002975 490 YTFASLLSGASSIGAIGKGEQIHARIIKS------GF-ESNHCIYNALISMYSRCANVEAAFQVFKEMED-------R-- 553 (861)
Q Consensus 490 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 553 (861)
.++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555555555555555555555432 11 22345667777777777777777777776542 1
Q ss_pred --CchHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----
Q 002975 554 --NVISWTSMITGFAKHGFAARALEIFYKMLAD------GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH---- 620 (861)
Q Consensus 554 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 620 (861)
...+|..+...|...|++++|+.+|++..+. +-.|+ ..++..+...+...|++++|..+|+.+.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777778888888888888888888764 11333 4567778888888888888888888876421
Q ss_pred --CCCCC-hhHHHHHHHHhhh------cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 621 --GIVQR-MEHYACMVDLLGR------SGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 621 --~~~p~-~~~~~~l~~~~~r------~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
...+. ...+..+...+.. ...+.++...++... ..| ...+|..+...+...|+++.|...+++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 2223333333222 334555666666654 223 34578888999999999999999999988753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-08 Score=100.63 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=147.4
Q ss_pred CCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHHhccC--CC----ch
Q 002975 486 GTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESN---HCIYNALISMYSRCANVEAAFQVFKEMED--RN----VI 556 (861)
Q Consensus 486 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~ 556 (861)
+.+...+......+.+.|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888999999999999999998864 333 67788899999999999999999998874 32 34
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChh
Q 002975 557 SWTSMITGFAK--------HGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRME 627 (861)
Q Consensus 557 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 627 (861)
.+..+..++.. .|++++|+..|++.++. .|+.. ....+.. +..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHH
Confidence 67778888888 99999999999999984 56532 2222111 1111100 011
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHh----------CCHHHHHHHHHHHhccCCCCC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVH----------GDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 692 (861)
.+..+...|.+.|++++|+..++++. ..|+ ...|..+..++... |+++.|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 24456778888899999988887762 2232 44677777777765 899999999999999999986
Q ss_pred c---hHHHHHHHHHHcCChhH
Q 002975 693 A---AHILLSNLYASAGHWEY 710 (861)
Q Consensus 693 ~---~~~~L~~~y~~~g~~~~ 710 (861)
. ++..|..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 44566666666665554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-08 Score=114.71 Aligned_cols=147 Identities=12% Similarity=-0.006 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACM 632 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 632 (861)
...|..+...|.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+. .| +...|..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHH
Confidence 34455555555555555555555555555 2332 334555555555555555555555555421 22 23444555
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
..+|.+.|++++ ++.++++. .. .+...|..+..++...|++++|+..++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 55555542 22 2455666666667777777777777777777777777777777777655554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-08 Score=95.90 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC--CCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED--RNV----ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITY 593 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 593 (861)
...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++.++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34555667778888999999999988763 332 46777888888899999999999998884 4542 244
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 002975 594 IAVLSACSH------------------AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLS 655 (861)
Q Consensus 594 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~ 655 (861)
..+..++.. .|+.++|...|+.+.+.+.-.+. .+... .+.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~----~~l~~~~~~~--------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDAT----KRLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHH----HHHHHHHHHH---------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHH----HHHHHHHHHH---------
Confidence 445555543 34566666666666533211111 11111 0000000000
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP---AAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678899999999999999999999986 56889999999999999999999988876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=102.51 Aligned_cols=172 Identities=10% Similarity=-0.014 Sum_probs=130.9
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 542 AAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 542 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
...+.+......+...+..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 334444444444455666777778888888888888888888 4564 45777788888888888888888887763
Q ss_pred CCCCChhHHHHH-HHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CchH
Q 002975 621 GIVQRMEHYACM-VDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD--PAAH 695 (861)
Q Consensus 621 ~~~p~~~~~~~l-~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 695 (861)
..|+....... .-.+.+.|+.++|.+.+++.. .+.+...+..|..++...|+.+.|+..++++++.+|++ ..++
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 34544333222 223667777788888877763 34467899999999999999999999999999999998 8899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH
Q 002975 696 ILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 696 ~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999998876643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-07 Score=91.96 Aligned_cols=173 Identities=9% Similarity=0.044 Sum_probs=104.2
Q ss_pred HHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002975 543 AFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYD 618 (861)
Q Consensus 543 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 618 (861)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555442 3344445556666667777777777766655442222 34555666666777777777777777652
Q ss_pred hcCCCC-----ChhHHHHHHHH----hhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Q 002975 619 EHGIVQ-----RMEHYACMVDL----LGRSGSLTEALEFIRSMP-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ- 687 (861)
Q Consensus 619 ~~~~~p-----~~~~~~~l~~~----~~r~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 687 (861)
..| +..+...+..+ ....+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234 12333333322 222337777777777763 3344222333444677778888888888877766
Q ss_pred ---------CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 688 ---------DPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 688 ---------~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+|+|+.++..++.++...|+ +|.++++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77788777776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-07 Score=92.46 Aligned_cols=240 Identities=6% Similarity=-0.013 Sum_probs=154.0
Q ss_pred HcCCHHHHHHHHHhcCCCCee-hHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHH
Q 002975 435 RSGRMEDARKAFESLFEKNLV-SYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHA 513 (861)
Q Consensus 435 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 513 (861)
-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 357777776655555332222 222234667767766531 12234433433333333 222 455566
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002975 514 RIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDR-----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKP 588 (861)
Q Consensus 514 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (861)
.+...+ .++......+..+|...|++++|++++.+.... +...+-.++..|.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 555544 444555567788888889999999888877432 345666778888889999999999999887 567
Q ss_pred -----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC-----
Q 002975 589 -----NGITYIAVLSA--CSHAG--LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPL----- 654 (861)
Q Consensus 589 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~----- 654 (861)
+..+...+..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35555666655 33334 788899999888743 34433333444478888999999988876421
Q ss_pred ------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 655 ------SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 655 ------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
.| |+.+.-.++......|+ .|.+..+++.+.+|+++-...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 13 45566566666677787 889999999999999876554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=83.76 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+|+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45566666667777777777777766632 223445555666666666666666666665522
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 637 GRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
.+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112334455555555556666666666666666666666666666666666666666666665
Q ss_pred HHHh
Q 002975 717 RMKE 720 (861)
Q Consensus 717 ~m~~ 720 (861)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=92.81 Aligned_cols=122 Identities=10% Similarity=-0.001 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG 672 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 672 (861)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++.. ..| ++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667788999999988776 33443 3345568899999999999999999873 344 6889999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHH-HHHHHh
Q 002975 673 DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANI-RKRMKE 720 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~-~~~m~~ 720 (861)
+.+.|+..++++++++|+++.++..|+.+|...|++++|.+. .++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 465544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.9e-08 Score=84.75 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.|..+...+.+.|++++|.++++++. .+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 35556677777777777777777652 2346778888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 002975 706 GHWEYVANIRKRMKERN 722 (861)
Q Consensus 706 g~~~~a~~~~~~m~~~~ 722 (861)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.6e-07 Score=88.95 Aligned_cols=172 Identities=7% Similarity=-0.046 Sum_probs=127.5
Q ss_pred HHHHHHhcc-CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 002975 543 AFQVFKEME-DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG----LISEGWKHFRSMY 617 (861)
Q Consensus 543 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 617 (861)
|.+.|++.. ..+..++..|...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454443 3466677777777777788888888888877755 44566666666666 5 7888888888775
Q ss_pred hhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----hCCHHHHHHHHHHHh
Q 002975 618 DEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSAD----VLVWRTFLGACRV----HGDTELGKHAAEMIL 685 (861)
Q Consensus 618 ~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 685 (861)
+. -+...+..|..+|.. .+++++|++++++.....+ +..+..|...+.. .+|.++|+..++++.
T Consensus 81 -~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22 245566667777766 7788888888888753333 6788888888887 789999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 002975 686 EQDPQDPAAHILLSNLYASA-G-----HWEYVANIRKRMKERNL 723 (861)
Q Consensus 686 ~~~p~~~~~~~~L~~~y~~~-g-----~~~~a~~~~~~m~~~~~ 723 (861)
++ |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 77888999999999875 3 89999999998877553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-08 Score=91.27 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=61.4
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD--PAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
|++.+++.. ..| +...|..+..++...|+.+.|+..++++++++|+. +..+..|+.+|...|++++|...++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 455554432 234 57889999999999999999999999999999975 558999999999999999999888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-07 Score=94.67 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=153.9
Q ss_pred cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc-ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHH
Q 002975 467 NLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS-IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQ 545 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 545 (861)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 10 111 45666666666554 456778899999888
Q ss_pred HHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHHHHHhcCCHHHHHH
Q 002975 546 VFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI---KPN--GITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 546 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887652 12 34788888999999999999999998776311 222 3477888888888 99999999
Q ss_pred HHHHHHhhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHhCCHHHHHH
Q 002975 612 HFRSMYDEHGIVQ----RMEHYACMVDLLGRSGSLTEALEFIRSMP----LSAD----VLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 612 ~~~~m~~~~~~~p----~~~~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+|++..+.+.-.. ....+..+..+|.+.|++++|++.+++.. ..++ ...|..++..+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998874332111 13567888999999999999999998763 1122 2256666677778899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHHcCChhHHHHH
Q 002975 680 AAEMILEQDPQDPAA-----HILLSNLYASAGHWEYVANI 714 (861)
Q Consensus 680 ~~~~~~~~~p~~~~~-----~~~L~~~y~~~g~~~~a~~~ 714 (861)
.+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99976543 33445555 56776665553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-07 Score=107.35 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=140.2
Q ss_pred hcccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhc
Q 002975 500 SSIGAIGKGEQIHARII--------KSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKH 568 (861)
Q Consensus 500 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 568 (861)
...|+.++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666666666666665 322 44567788888888889999999999888763 4567888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
|++++|+..|++.++ ..|+ ...+..+..++...|++++ ...|++..+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 5564 5678888888999999999 8889888732 34 4567888888999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHHhCC-----HHHHHHHHHHHhccCCCCCchHHH
Q 002975 647 EFIRSMP-LSAD-VLVWRTFLGACRVHGD-----TELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 647 ~~~~~~~-~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
+.++++. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 9999874 5665 5577777777655554 455555666666666666555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=82.76 Aligned_cols=93 Identities=5% Similarity=0.005 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.+......|.+.|++++|++.|++.. .+.++.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34445555556666666666655542 2335666666777777777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHh
Q 002975 706 GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 g~~~~a~~~~~~m~~ 720 (861)
|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=107.60 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 002975 537 CANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999998874 3567899999999999999999999999998 5565 66888999999999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHhcc
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVH---GDTELGKHAAEMILEQ 687 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 687 (861)
|++..+.. +.+...+..+..+|.+.|++++|.+.+++.. . +.+...|..+...+... |+.+.|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988432 2346788899999999999999999999873 3 34678899999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 002975 688 DPQDPAAHILLS 699 (861)
Q Consensus 688 ~p~~~~~~~~L~ 699 (861)
+|++...+..|+
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999998887
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.3e-08 Score=88.11 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|+++.|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3455566777778888888888887753 34478899999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.6e-08 Score=86.80 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|+++. .+.++..|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 455566667777777777777777763 334688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=104.75 Aligned_cols=146 Identities=8% Similarity=-0.078 Sum_probs=94.6
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHH
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777888887776654 44567777888888888888888888887663 34567777888888888888888888
Q ss_pred HHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 002975 579 YKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---GSLTEALEFIRSM 652 (861)
Q Consensus 579 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---g~~~eA~~~~~~~ 652 (861)
++..+. .|+ ...+..+..++...|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888773 454 5577778888888888888888888777332 12456677777778777 8888888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-07 Score=88.39 Aligned_cols=125 Identities=8% Similarity=0.018 Sum_probs=94.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh
Q 002975 561 MITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR 638 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r 638 (861)
+...|.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 78888899999999999999888 4564 567888888899999999999999988743 44 45677778777766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 639 SGS--LTEALEFIRSMPLSADV--LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 639 ~g~--~~eA~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.|. .+++...++... .|++ ..|..+..++...|+++.|+..++++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 554 445666666653 4443 344556667778899999999999999999964
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-06 Score=84.76 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC--CHHHHHHHHHhccC---CCchHHHHHHHHH----Hhc---CChHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCA--NVEAAFQVFKEMED---RNVISWTSMITGF----AKH---GFAAR 573 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~ 573 (861)
++|.++.+.++..+ +.+..+|+.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34445555554443 334445555555555555 66666666666652 3445555544333 333 56677
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC------HHH
Q 002975 574 ALEIFYKMLADGIKP-NGITYIAVLSACSHAGLIS--EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS------LTE 644 (861)
Q Consensus 574 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~------~~e 644 (861)
++.+++++++. .| |..+|..-...+.+.|.++ +++++++.+.+.. .-+...|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 77777777763 33 4456666656666666666 7777777776322 1233344444444444444 777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGD-TELGKHAAEMILEQD---PQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
++++++++- .+-|...|+-+...+...|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777776652 34477888888888877775 444556777777766 777788888888888888888888888877
Q ss_pred Hh
Q 002975 719 KE 720 (861)
Q Consensus 719 ~~ 720 (861)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=81.07 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44445555555555555555555554221 1133445555555555555555555555542 2335778999999999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|+++.|+..++++++++|++..++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999998888765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=85.51 Aligned_cols=186 Identities=11% Similarity=-0.034 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHccCCHHHHHHHHHhccC--CCch----HHH
Q 002975 488 SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFES--NHCIYNALISMYSRCANVEAAFQVFKEMED--RNVI----SWT 559 (861)
Q Consensus 488 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~ 559 (861)
+...+..+...+.+.|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+.. +|.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864221 235778889999999999999999999873 4322 455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002975 560 SMITGFAK------------------HGFAARALEIFYKMLADGIKPNGI-TYIAVLSACSHAGLISEGWKHFRSMYDEH 620 (861)
Q Consensus 560 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 620 (861)
.+..++.. .|++++|+..|+++++ ..|+.. ....... .+. +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~~------~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LVF------LKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HHH------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HHH------HHHHHH---
Confidence 55555554 5789999999999998 567643 2221111 100 111111
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 621 GIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 621 ~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
.....+...|.+.|++++|+..++++. ..|+ ...+..+..++...|+.+.|+..++++....|++...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112346778899999999999998863 3333 2468888999999999999999999999999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=89.38 Aligned_cols=158 Identities=8% Similarity=-0.042 Sum_probs=108.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHH
Q 002975 562 ITGFAKHGFAARALEIFYKMLADG-IKPNGI----TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACM 632 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 632 (861)
+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+...+...-.++ ...|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 556667777777777777776632 112211 2223555566666777777777777642221222 2356777
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-------L-SAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHIL 697 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 697 (861)
...|.+.|++++|++.++++. . .+. ..+|..++..|...|+++.|+..+++++++.+.. +.+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 777777888777777776652 1 111 3477888999999999999999999999876543 567889
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHH
Q 002975 698 LSNLYASAGH-WEYVANIRKRMK 719 (861)
Q Consensus 698 L~~~y~~~g~-~~~a~~~~~~m~ 719 (861)
++.+|...|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999995 699998887664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.6e-07 Score=86.62 Aligned_cols=123 Identities=8% Similarity=-0.082 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh
Q 002975 594 IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVH 671 (861)
Q Consensus 594 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~ 671 (861)
..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++.. .+.+...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444555555666665555443 23445555556666666666666666665542 233567788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 672 GDTELGKHAAEMILEQDPQDP----------------AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
|+++.|+..+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999888877 88889999999999999999998887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-07 Score=86.18 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=118.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
.....+...|++++|+..|++.... .|+........ .... .........+.+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK-----------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT-----------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc-----------------hhhhhHHHHHHHHHHHHHCC
Confidence 3445667788888888888887754 23322111000 0000 00112233445888899999
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCC--HHHHHHH
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGL--ISEGWKH 612 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~ 612 (861)
++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998763 3567888999999999999999999999998 5665 5678778877766554 3344555
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSADVLVWRTFLG 666 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 666 (861)
++... ...|....+..+...+...|++++|++.|++. ...|+......|..
T Consensus 147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54433 22222223344556667789999999999886 47788665555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-07 Score=81.88 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344455666777777777777777652 334678899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.++...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-08 Score=97.62 Aligned_cols=190 Identities=8% Similarity=-0.034 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLS 598 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 598 (861)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++.++ ..|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566677777788888888888877652 3566777788888888888888888888877 4554 557777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
++...|++++|...|+...+.. |+. ..+...+....+.++...... ........+..+...+... ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 8888888888888887776322 211 011111121112111111111 2223344455555444333 26889999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHh
Q 002975 678 KHAAEMILEQDPQDPAAHILLSNLYASA-GHWEYVANIRKRMKE 720 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~~~~~~L~~~y~~~-g~~~~a~~~~~~m~~ 720 (861)
...++++++++|++......+..++... +++++|.+++..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888887 789999999987765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-06 Score=88.77 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CCchHHHH-HHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RNVISWTS-MITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 565 (861)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+...+.. ....+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3445555666667777777777777777665 45677788888888888888888888888764 44332222 22335
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
...++.++|+..|++..+ ..|+ ...+..+..++...|++++|...|+.+.+...-..+...+..++.+|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 677777888888888887 4454 5677778888888888888888888887443222224556666677777777666
Q ss_pred HHHHHHh
Q 002975 645 ALEFIRS 651 (861)
Q Consensus 645 A~~~~~~ 651 (861)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-06 Score=82.02 Aligned_cols=172 Identities=8% Similarity=-0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-CCchHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 002975 508 GEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-RNVISWTSMITGFAKHG----FAARALEIFYKML 582 (861)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 582 (861)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666777777777777888777776654 355667777777766 5 7888888888887
Q ss_pred HcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHhhh----cCCHHHHHHHHHh
Q 002975 583 ADGIKPNGITYIAVLSACSH----AGLISEGWKHFRSMYDEHGIVQR---MEHYACMVDLLGR----SGSLTEALEFIRS 651 (861)
Q Consensus 583 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~r----~g~~~eA~~~~~~ 651 (861)
+.| +...+..|...+.. .+++++|..+|++.. ...|. ...+..|..+|.. .+++++|+++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566667777766 678888888888776 23332 5666777777777 7788888888887
Q ss_pred CC-CCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHhccCC
Q 002975 652 MP-LSADVLVWRTFLGACRVH-G-----DTELGKHAAEMILEQDP 689 (861)
Q Consensus 652 ~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 689 (861)
.. ...++..+..|...|... | |.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 224555666777766543 3 88999999888888754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=88.85 Aligned_cols=163 Identities=8% Similarity=-0.049 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCC--hh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-G----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGI--VQR--ME 627 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 627 (861)
.+...+..+...|++++|++.+++.++.....+ . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777777777777777766421111 1 12334455566777888888877776532111 111 34
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP----LSAD-----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DP 692 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 692 (861)
.|..+...|...|++++|++.++++. ..|+ ..++..++..|...|+++.|+..+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777778888888888888777652 1222 257888889999999999999999999887543 15
Q ss_pred chHHHHHHHHHHcCChhHH-HHHHHHHH
Q 002975 693 AAHILLSNLYASAGHWEYV-ANIRKRMK 719 (861)
Q Consensus 693 ~~~~~L~~~y~~~g~~~~a-~~~~~~m~ 719 (861)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-05 Score=81.30 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=167.8
Q ss_pred cCChhHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhccc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hcc--
Q 002975 467 NLNSEKAFELLHEIEDTGVGTS-AYTFASLLSGASSIG--AIGKGEQIHARIIKSGFESNHCIYNALISMY----SRC-- 537 (861)
Q Consensus 467 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 537 (861)
....++|++++.++... .|+ ...++.--..+...+ +++++.+.++.++..+ +.+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34456888888888754 344 344565556666667 8888888888888765 44556666554444 455
Q ss_pred -CCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC------
Q 002975 538 -ANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA--RALEIFYKMLADGIKPNGITYIAVLSACSHAGL------ 605 (861)
Q Consensus 538 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 605 (861)
+++++++++++.+.+ +|..+|+--...+.+.|.++ ++++.++++++.. .-|...|..-.....+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 788999999998874 56778888888888888888 9999999999854 2245567666666667666
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHhCCHHHHHH
Q 002975 606 ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE-ALEFIRSMP-L----SADVLVWRTFLGACRVHGDTELGKH 679 (861)
Q Consensus 606 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a~~ 679 (861)
+++++++++.+.... +-+...|+.+..++.+.|+..+ +.++.++.. . ..++..+..++.++.+.|+.++|+.
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999998887432 3356677777788888887444 556777653 1 3467889999999999999999999
Q ss_pred HHHHHhc-cCCCCCchHHHHHH
Q 002975 680 AAEMILE-QDPQDPAAHILLSN 700 (861)
Q Consensus 680 ~~~~~~~-~~p~~~~~~~~L~~ 700 (861)
+++.+.+ .+|.....+...++
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999996 89988777665443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-05 Score=83.78 Aligned_cols=202 Identities=12% Similarity=0.046 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH-HHHHHh
Q 002975 471 EKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAA-FQVFKE 549 (861)
Q Consensus 471 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~ 549 (861)
+.+..+|+++.... +-+...|...+.-+.+.|+.+.|..++++.++. +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777776542 344566666666677778888888888888877 334333322 2221111111 111111
Q ss_pred cc------------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 002975 550 ME------------DRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACS-HAGLISEGWKHFRSM 616 (861)
Q Consensus 550 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m 616 (861)
.. ......|...+..+.+.+..+.|..+|++. +. ...+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001234556666666667777787787777 31 1122233332111111 223577778888777
Q ss_pred HhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 617 YDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 617 ~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
.+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++.+
T Consensus 347 l~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7554322 3345556677777777777777777763 245677777776677777776666555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.3e-07 Score=78.80 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=78.8
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556667777777777777777652 334678899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999999987765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.2e-07 Score=92.58 Aligned_cols=197 Identities=6% Similarity=-0.078 Sum_probs=151.6
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYK 580 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 580 (861)
..|++++|.+++.+..+..- .. .+...+++++|...|... ...|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35788899999988876421 11 111258899999888764 5678899999999999998
Q ss_pred HHHcCC---CC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--C--ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 581 MLADGI---KP-N-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV--Q--RMEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 581 m~~~g~---~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
..+... .+ . ..+|..+...|...|++++|...|++..+.+.-. + ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 3478889999999999999999999887433211 1 13567888889988 999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHHcCChhHHHHHHHH
Q 002975 652 MP----LSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA------AHILLSNLYASAGHWEYVANIRKR 717 (861)
Q Consensus 652 ~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~L~~~y~~~g~~~~a~~~~~~ 717 (861)
.. ...+ ..++..+...+...|+++.|+..+++++++.|++.. .+..++.+|...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1111 457888999999999999999999999998776543 666788899999999999999987
Q ss_pred HH
Q 002975 718 MK 719 (861)
Q Consensus 718 m~ 719 (861)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 75
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.6e-06 Score=79.39 Aligned_cols=146 Identities=7% Similarity=-0.037 Sum_probs=108.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAG 604 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 604 (861)
.+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+. .| +...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556677888899999999998888888888888888888899999999999888884 34 3567778888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEM 683 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 683 (861)
++++|...|+...+...-.+... +...|. ...| ...+|..+..++...|+.+.|...+++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888888774321111110 000000 1223 246788888899999999999999999
Q ss_pred HhccCCCCC
Q 002975 684 ILEQDPQDP 692 (861)
Q Consensus 684 ~~~~~p~~~ 692 (861)
+++++|++.
T Consensus 147 al~~~p~~~ 155 (213)
T 1hh8_A 147 ATSMKSEPR 155 (213)
T ss_dssp HHTTCCSGG
T ss_pred HHHcCcccc
Confidence 999999763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-07 Score=87.86 Aligned_cols=180 Identities=8% Similarity=0.008 Sum_probs=134.2
Q ss_pred ccCCHHHHHHHHHhccC--C-CchHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCh---------------
Q 002975 536 RCANVEAAFQVFKEMED--R-NVISWTSM-------ITGFAKHGFAARALEIFYKMLADGIKPNG--------------- 590 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 590 (861)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888889999988873 3 34688877 4666666666677666666555 34431
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----H
Q 002975 591 -------ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADV----L 659 (861)
Q Consensus 591 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~----~ 659 (861)
.....+..++...|++++|.++|+.+.. ..|+....-.+..++.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456678889999999999987762 3354335555667889999999999999876544433 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQD--PQ-DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++..|..++...|+.++|+..++++.... |. .+.....++.++.+.|+.++|..+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888999999999999999998644 55 455788999999999999999999998877
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=91.26 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHhh
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR--MEHYACMVDLLG 637 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~ 637 (861)
.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHH
Confidence 4556677888888888888887763 4655455556667888888888888887544 111 121 235666788888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 638 RSGSLTEALEFIRSMP---LSAD--VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
+.|++++|+..+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +.....|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8999999998888763 2143 347778888899999999999999999999997 655555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-06 Score=80.10 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH-hh
Q 002975 425 VGNSLISMYARSGRMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSG-AS 500 (861)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~ 500 (861)
....+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566778888999999999988864 345678888888999999999999998876543 344322221111 11
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--CC---chHHHHHHHHHHhcCChHHHH
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--RN---VISWTSMITGFAKHGFAARAL 575 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~ 575 (861)
..+....+...++.+++.. +.+...+..+...|...|++++|...|+++.+ |+ ...|..+...|...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223445555555443 33455555555555555555555555555442 21 234555555555555555555
Q ss_pred HHHHHHH
Q 002975 576 EIFYKML 582 (861)
Q Consensus 576 ~~~~~m~ 582 (861)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=77.14 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
.+..+...+...|++++|..+|+...+ ..| +...+..+...|...|++++|++.++++. .+.+..+|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444444444444444444444431 122 23344444455555555555555554432 233567888888899
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
...|+++.|+..++++++++|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-07 Score=93.91 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++...- .. ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-AL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-HH--------HHHHHHHHH
Confidence 3456777777777888888888888887773 4442100 000110000 00 124455666
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+...|..+..++...|+++.|+..++++++++|++..++..|+.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777666652 2336778899999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHH
Q 002975 712 A-NIRKRM 718 (861)
Q Consensus 712 ~-~~~~~m 718 (861)
. +.++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=74.09 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|..+|+.+.+.. +.+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444444444444444444221 1123344444555555555555555555442 2335678888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
..|+.+.|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-06 Score=78.37 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=67.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH--HHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS--NLY 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~--~~y 702 (861)
..+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+++.|...++++++++|++...+..++ ..+
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444444444555555554444431 2335678888888999999999999999999999999988885544 448
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.+....+
T Consensus 128 ~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 128 VKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHH
Confidence 889999999998876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-06 Score=74.48 Aligned_cols=116 Identities=8% Similarity=-0.084 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.+++.. .+.+..+|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444444444555555555555444221 1133444445555555555555555555432 2335678888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
..|+.+.|...++++++++|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-05 Score=80.06 Aligned_cols=159 Identities=9% Similarity=-0.053 Sum_probs=119.1
Q ss_pred HHHHHHHccCCHHHHHHHHHhccCCC---c-----h-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMEDRN---V-----I-SWTSMITGFAKHGFAARALEIFYKMLADGIK-PN----GITYI 594 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~~~---~-----~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 594 (861)
..+..+...|++++|...+++..+.. . . .+..+...+...|++++|+..|++..+.... ++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999876421 1 1 2334666677778999999999999984322 22 22688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhc----CCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHH
Q 002975 595 AVLSACSHAGLISEGWKHFRSMYDEH----GIVQR-MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVW 661 (861)
Q Consensus 595 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~ 661 (861)
.+..+|...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|++.+++.. ..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987422 11122 2367888899999999999999988752 1222 6688
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHhcc
Q 002975 662 RTFLGACRVHG-DTELGKHAAEMILEQ 687 (861)
Q Consensus 662 ~~ll~~~~~~g-~~~~a~~~~~~~~~~ 687 (861)
..++.++...| +.+.|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 569999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-06 Score=79.59 Aligned_cols=94 Identities=9% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHHhCCH--HHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGA-CRVHGDT--ELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
.+..+...|...|++++|.+.++++. .+.+...|..+..+ +...|+. +.|+..++++++++|+++..+..++.+|
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33334444444444444444444331 12245566667777 6677777 8888888888888888888888888888
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 002975 703 ASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~~ 721 (861)
...|++++|.+.++...+.
T Consensus 126 ~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 126 FMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHhh
Confidence 8888888888888777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-06 Score=79.14 Aligned_cols=156 Identities=12% Similarity=-0.042 Sum_probs=83.8
Q ss_pred ccCCHHHHHH---HHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 536 RCANVEAAFQ---VFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD----GIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 536 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
..|++++|.+ .+..-......+++.+...|...|++++|+..|++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 333322223455666666666777777777776666552 11221 234555666666666666
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA--DVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
+|..++++..+...-.+ ..+ ...++..+...+...|+++.|+..+++++
T Consensus 84 ~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666655542211111 011 12344555556666666666666666666
Q ss_pred ccCCC--C----CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 686 EQDPQ--D----PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 686 ~~~p~--~----~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 54221 1 12346777788888888888777665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=82.80 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=112.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhccC--CC-c------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hH
Q 002975 526 IYNALISMYSRCANVEAAFQVFKEMED--RN-V------ISWTSMITGFAKHGFAARALEIFYKMLADGIK---PN--GI 591 (861)
Q Consensus 526 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 591 (861)
.+...+..|...|++++|.+.+++..+ +. . ..+..+...+...|++++|+..|++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566777888888888888875542 11 1 12334555667778888998888888763211 11 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-------CCC-CH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR-----MEHYACMVDLLGRSGSLTEALEFIRSMP-------LSA-DV 658 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p-~~ 658 (861)
++..+...|...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|++.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888889999999888887732222222 2477788888889999999988887652 111 15
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHhcc
Q 002975 659 LVWRTFLGACRVHGDTELG-KHAAEMILEQ 687 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 687 (861)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778877753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0002 Score=79.05 Aligned_cols=201 Identities=12% Similarity=0.004 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHH-HHHHHhcC
Q 002975 372 AVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDA-RKAFESLF 450 (861)
Q Consensus 372 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 450 (861)
+..+|+++... .+-+...|...+.-+.+.|+.+.|..+++..++. +.+...+. .|+...+.++. ..+.+...
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHH
Confidence 44566665543 2233455555555556667777777777777766 33322222 22222111111 01111100
Q ss_pred --C-------C---CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc-chHHHHHHHHHHHH
Q 002975 451 --E-------K---NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIK 517 (861)
Q Consensus 451 --~-------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~ 517 (861)
+ + ....|...+....+.+..+.|..+|.+. .. ...+...|......-...+ +.+.|..+++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0 1134555555555666677777777777 21 1123333332111111222 57777777777766
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
.. +.++..+...++...+.|+.+.|..+|+.+. .....|...+.--..+|+.+.+..+++++.+
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 3334455556666677777777777777763 2455666666666666777777666666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=96.23 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--H
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL--Y 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~--y 702 (861)
..|..+..+|.+.|++++|++.++++. .. .+...|..+..++...|++++|+..++++++++|++..++..++.+ +
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344444444455555555555544431 22 3567888999999999999999999999999999999999999988 8
Q ss_pred HHcCChhHHHHHHHH
Q 002975 703 ASAGHWEYVANIRKR 717 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~ 717 (861)
.+.|++++|.+.++.
T Consensus 121 ~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 121 VKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHCCC------
T ss_pred HHHHHHHHHhccccc
Confidence 999999999998773
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=75.84 Aligned_cols=92 Identities=14% Similarity=-0.023 Sum_probs=79.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAG 706 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g 706 (861)
+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456667778888888888888763 334 68899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 002975 707 HWEYVANIRKRMKE 720 (861)
Q Consensus 707 ~~~~a~~~~~~m~~ 720 (861)
++++|.+.++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=78.88 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|+++.|+..++++++++|+++..|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344445555556666666666655542 223566777777777777777777777777777777777777777888888
Q ss_pred cCChhHHHHHHHHHHh
Q 002975 705 AGHWEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~~~~a~~~~~~m~~ 720 (861)
.|++++|.+.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 8888877777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-07 Score=86.73 Aligned_cols=170 Identities=9% Similarity=-0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAG 604 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 604 (861)
+..+......|++++|.+.++...+ .....|..+...+...|++++|+..|++.++. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3344455566777777777764432 23456777778888888888888888888873 3332100000
Q ss_pred CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002975 605 LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAE 682 (861)
Q Consensus 605 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 682 (861)
..+.-.. .+ ....|..+..+|.+.|++++|++.+++.. .+.+...|..+..++...|+++.|+..++
T Consensus 78 ~~~~~~~---~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKKK---NI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHH---HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHH---HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000000 00 12345556666666777777777666652 23467788889999999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCChhHHH-HHHHHH
Q 002975 683 MILEQDPQDPAAHILLSNLYASAGHWEYVA-NIRKRM 718 (861)
Q Consensus 683 ~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~-~~~~~m 718 (861)
++++++|++..++..++.++...|+.+++. ..++.|
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888776 344444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-06 Score=70.00 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.+..+...+...|++++|.+.+++.. .+.+...|..+...+...|+++.|...++++++.+|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444455555555555555555542 2224556666666666666777777777777776776666666677777777
Q ss_pred CChhHHHHHHHHHHh
Q 002975 706 GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 g~~~~a~~~~~~m~~ 720 (861)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=78.15 Aligned_cols=104 Identities=8% Similarity=-0.041 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~ 668 (861)
.+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|++.++++. . +.++..|..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555555556666666655555422 22 33445555555666666666666665542 2 33567888888999
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
...|+.+.|+..++++++++|+++......
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 999999999999999999999887765443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=76.81 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=82.8
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHH
Q 002975 586 IKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVW 661 (861)
Q Consensus 586 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~ 661 (861)
+.|+ ...+..+...+.+.|++++|...|+...+. .| +...|..+..+|.+.|++++|++.|+++. ..| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4565 346777778888888888888888888733 34 45677788888888888888888888763 333 57789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 692 (861)
..+..++...|+.+.|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=76.07 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccC---------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMED---------RNVISWTSMITGFAKHGFAARALEIFYKMLAD----GIKP- 588 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 588 (861)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|+..+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 445566666666677777777666665542 12346667777778888888888888776653 1112
Q ss_pred C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHh
Q 002975 589 N-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRS 651 (861)
Q Consensus 589 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~ 651 (861)
. ...+..+...+...|++++|..++++..+...-..+ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 1 235666777777888888888877776532111111 11234444555555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-06 Score=73.62 Aligned_cols=96 Identities=13% Similarity=-0.021 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+...+..+...+...|++++|+..+++.. .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34555566666666777777766666542 2335778888888999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999887765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-06 Score=77.29 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=91.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH-hhhcCCH-
Q 002975 566 AKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL-LGRSGSL- 642 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~r~g~~- 642 (861)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+...+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3456777777777777763 34 35567777777777788888888777776432 1244556666666 6677877
Q ss_pred -HHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 643 -TEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 643 -~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
++|.+.++++. . +.+...|..+...+...|+++.|+..++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 88888877763 2 33577888899999999999999999999999999987765544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-06 Score=76.67 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADN 736 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~ 736 (861)
+..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------- 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------------
Confidence 34688888999999999999999999999999999999999999999999999999999887662
Q ss_pred eEEEEEeCCCCCCChH-HHHHHHHHHHHHHHh
Q 002975 737 KVHKFHVGETSHPKTL-EIYAELDQLALKIKE 767 (861)
Q Consensus 737 ~~~~f~~~~~~~~~~~-~i~~~l~~l~~~~~~ 767 (861)
.|... .+...+..+...+++
T Consensus 127 -----------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 -----------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp -----------CGGGHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHH
Confidence 35555 666777777766654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=69.46 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|+..++++++.+|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788899999999999999999873 34467889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998866
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-06 Score=71.04 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=76.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ--DPAAHILLSNLY 702 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~y 702 (861)
..+..+...+.+.|++++|...+++.. .+.+..+|..+...+...|+++.|+..++++++++|+ +...+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344555666667777777777766652 2345678888888899999999999999999999999 899999999999
Q ss_pred HHc-CChhHHHHHHHHHHhCC
Q 002975 703 ASA-GHWEYVANIRKRMKERN 722 (861)
Q Consensus 703 ~~~-g~~~~a~~~~~~m~~~~ 722 (861)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999988876543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0001 Score=75.85 Aligned_cols=209 Identities=12% Similarity=0.137 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHHhccC---CCchHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 002975 507 KGEQIHARIIKSGFESNHCIYNALISMYSRCA-NVEAAFQVFKEMED---RNVISWTSMITGFAKH-G-FAARALEIFYK 580 (861)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 580 (861)
+|.++.+.++..+ +.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444433 333444444444444445 36666666665553 2344555554444444 4 56666666666
Q ss_pred HHHcCCCC-ChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCC-------HHH
Q 002975 581 MLADGIKP-NGITYIAVLSACSHAGLIS--------EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS-------LTE 644 (861)
Q Consensus 581 m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~-------~~e 644 (861)
+++. .| |...|..-.....+.|.++ +++++++++.+.. .-+...|+....++.+.|+ +++
T Consensus 151 ~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 151 SLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 6652 33 3344444444444444433 6666666666321 1234445555555555554 677
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHhccC------CCCCchHH
Q 002975 645 ALEFIRSMP--LSADVLVWRTFLGACRVHGDT--------------------ELGKHAAEMILEQD------PQDPAAHI 696 (861)
Q Consensus 645 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~ 696 (861)
++++++++- .+-|...|+-+-+.+...|+. ......+..+.... +..+-+..
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 777776652 344778888877777766643 22223333333222 45556677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 002975 697 LLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 697 ~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.|+++|.+.|+.++|.++++.+.+
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999998864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.7e-06 Score=73.23 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc-------hHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA-------AHILL 698 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~L 698 (861)
.+..+...+.+.|++++|++.|+++. . +.+..+|..+..++...|+++.|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34556777777788888887777752 3 336788999999999999999999999999999998764 56778
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 002975 699 SNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=72.02 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
.+..+...|.+.|++++|++.+++.. .+.+...|..+..++...|+.+.|...++++++++|++...+..+..+..
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 33344444444555555554444431 22356677788888888899999999999999999988877777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=70.25 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
...+..+...+...|++++|.+.+++.. .+.+..+|..+...+...|+.+.|+..++++++.+|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4566778889999999999999999863 34467889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999998766
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-05 Score=72.82 Aligned_cols=88 Identities=10% Similarity=0.124 Sum_probs=39.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKP-NGITYIAVLSACSHA 603 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 603 (861)
..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 3344444444455555444444331 23344444444444455555555555544442 22 233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 002975 604 GLISEGWKHFRSMY 617 (861)
Q Consensus 604 g~~~~a~~~~~~m~ 617 (861)
|++++|..+|+...
T Consensus 95 ~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 95 GKFRAALRDYETVV 108 (166)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.4e-06 Score=71.58 Aligned_cols=96 Identities=6% Similarity=0.008 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|+..++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999986 3344 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.++...+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=70.95 Aligned_cols=96 Identities=18% Similarity=0.088 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEALEFIRSM-PLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
+...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4455666777777788888888877775 34565 578888999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 002975 700 NLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 700 ~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+|...|++++|.+.++...+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5e-06 Score=74.75 Aligned_cols=108 Identities=12% Similarity=-0.044 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|++.+++.. .+.++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444555555566666666555555221 1133445555555666666666666665542 2335667888888999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..|+++.|+..++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999988776655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=68.57 Aligned_cols=75 Identities=16% Similarity=0.034 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
.+..+...+.+.|++++|.+.+++.. .+.+...|..+..++...|+.+.|...++++++++|+++..+..++.+.
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 33344444444444444444444431 2235667888888899999999999999999999999888887777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=74.64 Aligned_cols=107 Identities=12% Similarity=-0.066 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACR 669 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~ 669 (861)
.+..+...+...|++++|+.+|+...+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444211 1133344444555555555555555555442 2335778889999999
Q ss_pred HhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 670 VHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 670 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
..|+++.|+..++++++++|++...+...+.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999997765544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00032 Score=71.86 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=138.3
Q ss_pred hcCCh-hHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhccc----------chHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 002975 466 KNLNS-EKAFELLHEIEDTGVGTSAYT-FASLLSGASSIG----------AIGKGEQIHARIIKSGFESNHCIYNALISM 533 (861)
Q Consensus 466 ~~g~~-~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 533 (861)
+.|.+ ++|++++..+... .|+..| ++.--..+...+ .++++..+++.++... +-+..+|+.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34443 3677777777643 343332 232222222222 2567777777777765 5567777776667
Q ss_pred HHccC--CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc---
Q 002975 534 YSRCA--NVEAAFQVFKEMED---RNVISWTSMITGFAKHGF-AARALEIFYKMLADGIKP-NGITYIAVLSACSHA--- 603 (861)
Q Consensus 534 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~--- 603 (861)
+.+.| .+++++.+++.+.+ +|..+|+--...+...|. ++++++.++++++. .| |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 77777 47888888888773 566778777777777777 58888888888884 34 444555554444443
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc-----------CCHHHHHHHHHhCC-CCCCHH
Q 002975 604 -----------GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS-----------GSLTEALEFIRSMP-LSADVL 659 (861)
Q Consensus 604 -----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~-----------g~~~eA~~~~~~~~-~~p~~~ 659 (861)
+.++++++++...... .| +...|+-+--++.+. +.++++++.++++- ..||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 4577777777777632 33 344454444444443 45778888777763 45553
Q ss_pred HHHHHHHHH-----HHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 660 VWRTFLGAC-----RVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 660 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
.|.-+..+. ...|..+.....+.++.+++|...+.|..|..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 454322222 13466777888888888888877777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=81.68 Aligned_cols=191 Identities=11% Similarity=-0.025 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHH
Q 002975 489 AYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGF 565 (861)
Q Consensus 489 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 565 (861)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666677777777777766654 44778888899999999999999999998774 3567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
...|++++|+..|++..+. .|+. ..+...+..... ..++.... ... ......+......+..++ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWN-SIE-ERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHH-HHH-HTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHH-HHH-HHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999998873 3432 111111111111 11112221 122 223444555544444443 789999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHh-CCHHHHHHHHHHHhccCC
Q 002975 645 ALEFIRSM-PLSADVL-VWRTFLGACRVH-GDTELGKHAAEMILEQDP 689 (861)
Q Consensus 645 A~~~~~~~-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p 689 (861)
|++.++++ ...|+.. ....+....... +..+.+..+++++.+..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99988776 3566543 444454445554 678889999998887543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00049 Score=70.86 Aligned_cols=230 Identities=11% Similarity=0.051 Sum_probs=156.8
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-C-C
Q 002975 463 AYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG-AIGKGEQIHARIIKSGFESNHCIYNALISMYSRC-A-N 539 (861)
Q Consensus 463 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~ 539 (861)
...+.+..++|++++.++.... +-+...++.--..+...+ .++++.++++.++... +.+..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344556678888888888653 223444555555566667 5888888888888765 55677777766666666 6 7
Q ss_pred HHHHHHHHHhccC---CCchHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---
Q 002975 540 VEAAFQVFKEMED---RNVISWTSMITGFAKHGFAA--------RALEIFYKMLADGIKPNGITYIAVLSACSHAGL--- 605 (861)
Q Consensus 540 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 605 (861)
.++++++++.+.+ +|..+|+--...+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8899999998885 45567776665555555555 8999999999853 2256677777777777775
Q ss_pred ----HHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCC--------------------HHHHHHHHHhCCC------
Q 002975 606 ----ISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGS--------------------LTEALEFIRSMPL------ 654 (861)
Q Consensus 606 ----~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~--------------------~~eA~~~~~~~~~------ 654 (861)
+++++++++++... .| +...|+-+-.++.+.|+ ..+..++..++..
T Consensus 220 ~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred chHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 78888888888733 34 45566666566666554 3445555555431
Q ss_pred --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCchHHHH
Q 002975 655 --SADVLVWRTFLGACRVHGDTELGKHAAEMIL-EQDPQDPAAHILL 698 (861)
Q Consensus 655 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~L 698 (861)
.+.+..+..|+..|...|+.++|..+++.+. +.+|-....+...
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2567788889999999999999999999987 7888665555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=68.51 Aligned_cols=111 Identities=9% Similarity=-0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
.|..+...+.+.|++++|+..|++.++. .|+ ...|..+..++...|++++|...|+...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------- 67 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---------------- 67 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------
Confidence 4455555555666666666666665552 332 344555555555555555555555544411
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 002975 636 LGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD------PQDPAAHILLSNLYA 703 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~y~ 703 (861)
.+.+...|..+..++...|+++.|+..++++++++ |++......+..+..
T Consensus 68 ------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 ------------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 22346678888888888899999999999999988 877777776666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=86.39 Aligned_cols=143 Identities=18% Similarity=0.042 Sum_probs=98.3
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+ .... ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HHHH--------HHHHHHHHH
Confidence 345677788888888888888888888877 33432100 0 000000 0000 124556666
Q ss_pred HHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 634 DLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
.+|.+.|++++|++.++++. .+.+...|..+..++...|+++.|+..++++++++|++..++..|+.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776652 2336778899999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHH
Q 002975 712 AN-IRKRM 718 (861)
Q Consensus 712 ~~-~~~~m 718 (861)
.+ .++.|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 65 34444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=68.75 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-------PAAHIL 697 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 697 (861)
..+..+...+...|++++|...+++.. .+.+..+|..+...+...|+++.|...+++++++.|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345556666677777777777776652 33467788888888999999999999999999998876 778899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 002975 698 LSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=88.71 Aligned_cols=115 Identities=9% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 532 SMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
..|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++.++ +.|+ ...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566677777777766542 2455666666667777777777777777666 3443 445666666666667777
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHH--hhhcCCHHHHHHHHH
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDL--LGRSGSLTEALEFIR 650 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~r~g~~~eA~~~~~ 650 (861)
+|.+.|++..+...-. ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC--TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777666665332111 2223333333 555556666665555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=71.72 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQ-------DPQDPAAH----ILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|..+..++...|++++|+..+++++++ +|+++.+| ..++.++...|++++|.+.+++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 348888888888999999999999999988 99999999 9999999999999999999887754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.1e-05 Score=73.28 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+|..+..++...|+++.|+..++++++++|+++.++..++.+|...|++++|.+.++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888899999999999999999999999999999999999999999999999999998765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=72.06 Aligned_cols=112 Identities=11% Similarity=-0.031 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPN-------------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIV 623 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 623 (861)
.+......+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..++...+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 445566777888889999998888888 4554 12677777777888888888777766552
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 624 QRMEHYACMVDLLGRSGSLTEALEFIRS-MPLSAD-VLVW----RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~eA~~~~~~-~~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
+|++ ....|+ ...| .....++...|++++|+..++++++++|+|.+.+--
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1222 234665 5588 899999999999999999999999999999887654
Q ss_pred HH
Q 002975 698 LS 699 (861)
Q Consensus 698 L~ 699 (861)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.1e-05 Score=67.86 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=62.0
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSAD-V---LVWRTFLGACRVHGDTELGKHAAEMILEQDPQD---PAAHILLSNLYA 703 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~y~ 703 (861)
+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+++.|+..++++++.+|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3445556666666666665542 1222 2 466667777778888888888888888888887 666788888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888777655
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-05 Score=79.82 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFI 649 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~ 649 (861)
+++|+..|++..+ ..|+ ...+..+...+...|++++|...|++..+...-.++. ..+++.++-
T Consensus 129 ~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~~~ 192 (336)
T 1p5q_A 129 FEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQ 192 (336)
T ss_dssp EECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHH
T ss_pred cccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------ChHHHHHHH
Confidence 3444444444333 2343 4466667777777777777777777666322111110 001111110
Q ss_pred HhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 650 RSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 650 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
. -...+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 193 -~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 193 -A----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -H----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 01578889999999999999999999999999999999999999999999999999999998876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.8e-06 Score=71.92 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=62.7
Q ss_pred hcCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 638 RSGSLTEALEFIRSMP-L---SA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
..|++++|+..|++.. . .| +..+|..+..++...|+++.|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3566677777776653 2 23 35577888888888899999999999999999999889999999999999999998
Q ss_pred HHHHHHHh
Q 002975 713 NIRKRMKE 720 (861)
Q Consensus 713 ~~~~~m~~ 720 (861)
+.++...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-05 Score=67.60 Aligned_cols=108 Identities=6% Similarity=-0.183 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++.. .+.+...|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344444444444444444444444444211 1123344444455555555555555554432 233567788888888
Q ss_pred HHhCCHHHHHHHHHHHhccCCC-----CCchHHHHHH
Q 002975 669 RVHGDTELGKHAAEMILEQDPQ-----DPAAHILLSN 700 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~L~~ 700 (861)
...|+++.|+..++++++++|+ +......+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 8889999999999999988887 4444444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.8e-05 Score=83.08 Aligned_cols=162 Identities=6% Similarity=-0.100 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCCC-ChhH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD-GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDE---HGIVQ-RMEH 628 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~ 628 (861)
+..|...|...|++++|.+++.++.+. +..++. .....+...+...|..+++..+++..... .+..+ ....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 566777888888888888888777652 111121 12222333344567788888877766532 12222 2456
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-------Cc
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSMP-------LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-------PA 693 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~ 693 (861)
+..+..+|...|++++|.+++++.. .++. ..++..++..|...|+++.|...+++++...+.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888888888888887652 1222 4477778888899999999999998888754322 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 002975 694 AHILLSNLYASAGHWEYVANIRKRMK 719 (861)
Q Consensus 694 ~~~~L~~~y~~~g~~~~a~~~~~~m~ 719 (861)
.+..++.+|...|+|++|.+.+...-
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677888888899999988766553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-05 Score=67.24 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=26.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..|...|.+.|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555555555544331 2334444455555555555555555555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0012 Score=67.70 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHHhccC---CCchHHHHHHHHHHhcC--C
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCAN----------VEAAFQVFKEMED---RNVISWTSMITGFAKHG--F 570 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 570 (861)
++|.++.+.++..+ +.+..+|+.--..+...+. +++++.+++.+.. ++..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 47888888888765 3445556554333433333 6788888888773 56788888877888888 4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc----------
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAGL-ISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS---------- 639 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~---------- 639 (861)
+++++.+++++.+.. +-|...|..-...+.+.|. +++++++++.+.+.. +-+...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 899999999999953 2356677777777778888 699999999998543 23445555555554443
Q ss_pred ----CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 640 ----GSLTEALEFIRSMP--LSADVLVWRTFLGACRVH-----------GDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 640 ----g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+.+++++++++++- .+-|...|+-+-+.+... +.++.++..++++++++|++.=++..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 56899999998873 455788998777766555 4588999999999999999844433333222
Q ss_pred ---HHcCChhHHHHHHHHHHh
Q 002975 703 ---ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ---~~~g~~~~a~~~~~~m~~ 720 (861)
...|..+++...+.++.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 235667777777777765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.9e-05 Score=80.60 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..|+.++..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555566666666666666666654 2333 577888899999999999999999999999999999999999999999
Q ss_pred cCChhHHHH
Q 002975 705 AGHWEYVAN 713 (861)
Q Consensus 705 ~g~~~~a~~ 713 (861)
.++.+++.+
T Consensus 354 ~~~~~~a~k 362 (370)
T 1ihg_A 354 IKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.7e-05 Score=70.78 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADG------IKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA 630 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 630 (861)
.|......+.+.|++++|+..|++.++.- -.|+...+ ..+. +.....|.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~-----~~~~~~~~ 67 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELD-----RKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHH-----HTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHH-----HHHHHHHH
Confidence 45566677777777777777777776620 01111100 0000 01123445
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC-chHHHHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP-AAHILLSNLYAS 704 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~~y~~ 704 (861)
.+..+|.+.|++++|+..+++.. .+.++..|..+..++...|+++.|+..++++++++|+++ .....|..+...
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55555666666666666655542 233577888899999999999999999999999999987 555555554433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.6e-05 Score=68.51 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN----GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYA 630 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 630 (861)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 35566667777777777777777776653111 11 124555566666666666666666555421100000
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHH
Q 002975 631 CMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQ------DPAAHILLSNLYA 703 (861)
Q Consensus 631 ~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~L~~~y~ 703 (861)
.+ ...++..+...+...|+++.|+..+++++++.+. ....+..++.+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 1335555666677777777777777777665321 2345778888888
Q ss_pred HcCChhHHHHHHHHHHh
Q 002975 704 SAGHWEYVANIRKRMKE 720 (861)
Q Consensus 704 ~~g~~~~a~~~~~~m~~ 720 (861)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 89999988888776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.4e-05 Score=66.22 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHG 672 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 672 (861)
+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|+..+++.. ..| +...|..|..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333444444444444444444421 22 23334444444455555555555554432 233 5667888888888888
Q ss_pred CHHHHHHHHHHHhccCCCCC
Q 002975 673 DTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 673 ~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+.|+..++++++++|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 89999999999999888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=63.57 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 355666666777777777777777776632 2234455666666666666666666666655221 00
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 636 LGRSGSLTEALEFIRSMPLSAD----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....++.++..
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 45667777778888888888888888888887 56666666555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.4e-05 Score=82.79 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=55.2
Q ss_pred CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 655 SAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAA---HILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 655 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
.|+ ..+++.|...|...|++++|+..++++++ +.|+++.+ ...|..++.++|++++|..++..+++.-.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 34677888888888999999988888886 46776654 457888899999999999999999885443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00012 Score=63.96 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
..++..+..++...|+.+.|+..++++++..|+++........+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45666777788888999999999999999999876665544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00027 Score=77.00 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=99.4
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHh--CCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC----chH
Q 002975 492 FASLLSGASSIGAIGKGEQIHARIIKS--GFES---NHCIYNALISMYSRCANVEAAFQVFKEMED-----RN----VIS 557 (861)
Q Consensus 492 ~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 557 (861)
+..+...|...|+++++.+.+..+.+. .+.. ...+.+.+...+...|+.+.|..+++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 334444555555555555554444321 1110 012233344445556777777777765541 11 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---C--hh
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLAD--GI--KPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ---R--ME 627 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---~--~~ 627 (861)
+..+...|...|++++|+.++++.... +. +|. ..++..++..|...|++++|..+++.......-.+ . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888889999999888887653 11 222 34677888889999999999999887764321111 1 24
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
.+..+...+...|++++|...+.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677788888999999988877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0005 Score=77.11 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=131.7
Q ss_pred CHHHHHHHHHhccC---CCchHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC
Q 002975 539 NVEAAFQVFKEMED---RNVISWTSMITGFAKHGF----------AARALEIFYKMLADGIKPN-GITYIAVLSACSHAG 604 (861)
Q Consensus 539 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 604 (861)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 34677888887763 344677776666666666 8999999999998 4554 568888888888888
Q ss_pred --CHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC-CHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHh-------
Q 002975 605 --LISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG-SLTEALEFIRSMP-L-SADVLVWRTFLGACRVH------- 671 (861)
Q Consensus 605 --~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g-~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~------- 671 (861)
++++++..++.+.+. .| +...|+.-.-++.+.| ..++++++++++- . .-|...|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999843 34 4556776667777788 8999999998874 3 34788999888887663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 672 -------GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 672 -------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
+.++++...++++++++|+|..+|..+..++...|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.6e-05 Score=68.50 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC-----CCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED-----RNV----ISWTSMITGFAKHGFAARALEIFYKMLADGIK-PN---- 589 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---- 589 (861)
..++..+...|...|++++|...|++..+ .+. .++..+...|...|++++|+..+++..+.... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999998763 221 47888899999999999999999998763111 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~ 668 (861)
...+..+...+...|++++|..+++...+.. +.....+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-----------------------------QELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------HHccchHhHHHHHHHHHHHH
Confidence 3456777778888888888888887765221 1110000 123455566666
Q ss_pred HHhCCHHHHHHHHHHHhccC
Q 002975 669 RVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~ 688 (861)
...|+.+.|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-05 Score=82.59 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
...|..+...+.+.|++++|+..|++.++ ..|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677888888899999999999999988 5566442 223444454443221 135777888
Q ss_pred HhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH-HcCChhHH
Q 002975 635 LLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA-SAGHWEYV 711 (861)
Q Consensus 635 ~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~-~~g~~~~a 711 (861)
+|.+.|++++|++.+++.. .. .+...|..+..++...|+++.|+..++++++++|++..++..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988763 33 367789999999999999999999999999999999999999988844 45667777
Q ss_pred HHHHHHHHh
Q 002975 712 ANIRKRMKE 720 (861)
Q Consensus 712 ~~~~~~m~~ 720 (861)
.+.++.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=8.9e-05 Score=78.61 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002975 590 GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGAC 668 (861)
Q Consensus 590 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~ 668 (861)
...+..+...+...|++++|...|++..+.. +.. ...-..+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4467778888888899999998888776321 000 00011111111 122 456888999999
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998866
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00016 Score=61.07 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHH
Q 002975 525 CIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN---GITYIAVLS 598 (861)
Q Consensus 525 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 598 (861)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHH
Confidence 3444455555555555555555554431 23344555555555555555555555555552 232 334455555
Q ss_pred HHHhc-CCHHHHHHHHHHHH
Q 002975 599 ACSHA-GLISEGWKHFRSMY 617 (861)
Q Consensus 599 a~~~~-g~~~~a~~~~~~m~ 617 (861)
++... |++++|.++++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 55555 55555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.6e-05 Score=65.30 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=72.3
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC------CchHHH
Q 002975 626 MEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD------PAAHIL 697 (861)
Q Consensus 626 ~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 697 (861)
...+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+++.|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4456667777778888888888777752 33467889999999999999999999999999999998 778888
Q ss_pred HHHHHHHcCChhHHHHH
Q 002975 698 LSNLYASAGHWEYVANI 714 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~ 714 (861)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 89999888888776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.4e-05 Score=67.38 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.+..+..+|.+.|++++|++.+++.. .+.+..+|..+..++...|+.+.|+..++++++..|+++........+..-
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555555442 233466778888888889999999999999999999887665444333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=8.2e-05 Score=61.85 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.++..|..+..++...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999987754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=79.96 Aligned_cols=131 Identities=8% Similarity=-0.072 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
++++|+..|+...+ ..|+ ...+..+...+.+.|++++|...|++..+...-.+... -++..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA- 311 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-
Confidence 34455555544433 2343 44677777888888888888888887774322222100 011111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 649 IRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
++. -...+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 312 ~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 000 024688889999999999999999999999999999999999999999999999999999988763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.1e-05 Score=80.26 Aligned_cols=151 Identities=10% Similarity=-0.037 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHA 603 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 603 (861)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764222111 1223333444433221 13677778888888
Q ss_pred CCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHHhCCHHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGA-CRVHGDTELGKH 679 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~-~~~~g~~~~a~~ 679 (861)
|++++|+..|+...+. .| +...|..+..+|...|++++|++.|+++. ..| +..++..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887733 34 45677778888888888888888888873 444 34456656555 344567788888
Q ss_pred HHHHHhccCCCCC
Q 002975 680 AAEMILEQDPQDP 692 (861)
Q Consensus 680 ~~~~~~~~~p~~~ 692 (861)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999999765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=59.55 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
..+..+...+.+.|++++|++.+++.. .+.+..+|..+..++...|+.+.|+..++++++++|+++..+..++.+|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345555666666777777777666642 233567888889999999999999999999999999999999999998877
Q ss_pred cC
Q 002975 705 AG 706 (861)
Q Consensus 705 ~g 706 (861)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=4e-05 Score=68.50 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=66.6
Q ss_pred hcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 638 RSGSLTEALEFIRSMP-L-SADVLVWRTFLGACRVHGD----------TELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 638 r~g~~~eA~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
|.+.+++|++.+++.. . +.++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4556677777666652 2 3356677777777666654 56999999999999999999999999999988
Q ss_pred C-----------ChhHHHHHHHHHHhC
Q 002975 706 G-----------HWEYVANIRKRMKER 721 (861)
Q Consensus 706 g-----------~~~~a~~~~~~m~~~ 721 (861)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=57.51 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 002975 655 SADVLVWRTFLGACRVHGD---TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~ 723 (861)
++|+..|..+..++...++ .+.|...++++++++|+++.+...|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4578888889888866655 79999999999999999999999999999999999999999999987544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=61.59 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 645 ALEFIRSM-PLS-ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 645 A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|++.+++. ... .+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455443 233 36778999999999999999999999999999999999999999999999999999999987765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00027 Score=77.33 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=80.8
Q ss_pred hhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCC---chHHH
Q 002975 636 LGRSGSLTEALEFIRSMP---------LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDP---AAHIL 697 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~---------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~ 697 (861)
+..+|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+..++++++ +.|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335566666666555431 2333 34778888889999999999999988886 345554 56778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 002975 698 LSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKE 767 (861)
Q Consensus 698 L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 767 (861)
|+.+|..+|++++|..++++..+.-.+ .=...||.+.++...+.+...+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877541110 0013699999999888887766654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0011 Score=55.87 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999988763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00045 Score=74.39 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQ-----DPQDP---AAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
.+++.|+.+|...|++++|+..+++++++ .|+++ ..+..|+.+|..+|++++|..++++..+.-. +
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~----- 403 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V----- 403 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----
Confidence 46777888888888888888888888752 44444 5677899999999999999998887654100 0
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIK 766 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 766 (861)
.-...||...+++..|.+...+|+
T Consensus 404 ------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 ------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 011369999999999998887775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0013 Score=52.92 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888889999999999999999999999999999999999999999999999999988765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0023 Score=56.68 Aligned_cols=111 Identities=6% Similarity=-0.084 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 002975 569 GFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEF 648 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~ 648 (861)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~------------------------------ 53 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE------------------------------ 53 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH------------------------------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc------------------------------
Confidence 34566666666666655 22222 44444455555555555555542
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHh
Q 002975 649 IRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIRKRMKE 720 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~~~m~~ 720 (861)
.-++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++.-+
T Consensus 54 ------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 54 ------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp ------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 2234444444444444 44555555555555554 345556666666666 5666666666665555
Q ss_pred CC
Q 002975 721 RN 722 (861)
Q Consensus 721 ~~ 722 (861)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=58.63 Aligned_cols=106 Identities=5% Similarity=-0.050 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHhccC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHH
Q 002975 538 ANVEAAFQVFKEMED-RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSH----AGLISEGWKH 612 (861)
Q Consensus 538 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 612 (861)
+++++|.+.|++..+ .+.... |...|...+..++|+++|++..+.| +...+..|...|.. .+++++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 468899999998764 344555 7777777788999999999999975 55677777777777 6788888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC
Q 002975 613 FRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSM 652 (861)
Q Consensus 613 ~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~ 652 (861)
|++..+. -+...+..|..+|.. .+++++|.+++++.
T Consensus 84 ~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 8877632 234444455555555 55555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00052 Score=73.71 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQD---PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+++.|..+|...|++++|+..++++++ +.|++ ...|..|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4677777788888888888888888775 34444 45677888899999999999998887654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0094 Score=61.20 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH
Q 002975 553 RNVISWTSMITGFA--KHG---FAARALEIFYKMLADGIKPNG-ITYIAVLSAC 600 (861)
Q Consensus 553 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 600 (861)
.|...|...+.+.. ..+ ...+|+.+|++.++ ..|+- ..+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46667766665543 333 34788999999998 67873 4454444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0068 Score=67.90 Aligned_cols=149 Identities=9% Similarity=0.024 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 568 HGFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGL----------ISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
....++|++.++++++ ..|+. ..|+.-..++.+.|. +++++..++.+.+.. +-+...|..-.-++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3445789999999999 67874 456666666667777 999999999998433 22445666666777
Q ss_pred hhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc------
Q 002975 637 GRSG--SLTEALEFIRSMP--LSADVLVWRTFLGACRVHG-DTELGKHAAEMILEQDPQDPAAHILLSNLYASA------ 705 (861)
Q Consensus 637 ~r~g--~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~------ 705 (861)
.+.| ++++|+++++++- .+.+..+|+.-..+....| ..+.+...++++++.+|+|..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 7799999999984 4457889999999999999 899999999999999999999999999998884
Q ss_pred --------CChhHHHHHHHHHHh
Q 002975 706 --------GHWEYVANIRKRMKE 720 (861)
Q Consensus 706 --------g~~~~a~~~~~~m~~ 720 (861)
++++++.+..+..-.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 556788777765543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0032 Score=51.98 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 554 NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 554 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+...|..+...|...|++++|+..|++.++ ..|+ ...|..+..++...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666677777777777777666 3343 4456666666777777777777666655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0021 Score=57.41 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHHhccC--C-CchHHHHHHHHHHhc
Q 002975 502 IGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN----------VEAAFQVFKEMED--R-NVISWTSMITGFAKH 568 (861)
Q Consensus 502 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 568 (861)
.+.+++|.+.+...++.. +.+...++.+..++...++ +++|+..|++..+ | +..+|..+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555555554 4455566655556655554 3466666666552 3 345667777777655
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002975 569 -----------GFAARALEIFYKMLADGIKPNGITYIAVLS 598 (861)
Q Consensus 569 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 598 (861)
|++++|++.|++.++ +.|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 367788888888777 6677666654444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0032 Score=51.63 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 633 VDLLGRSGSLTEALEFIRSMP-LSA-DVL-VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 633 ~~~~~r~g~~~eA~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
...+.+.|++++|++.++++. ..| +.. .|..+..++...|+++.|+..++++++++|+++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555555555555555542 222 344 555555555555555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0045 Score=50.72 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Chh-HHHHHHHHhhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHh
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ-RME-HYACMVDLLGRSGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVH 671 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~ 671 (861)
....+...|++++|...|+...+. .| +.. .+..+..+|.+.|++++|++.+++.. ..|+ ...|. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------H
Confidence 445666777777777777777633 23 345 66667777777777777777777652 2332 22221 1
Q ss_pred CCHHHHHHHHHHHhccCCCCC
Q 002975 672 GDTELGKHAAEMILEQDPQDP 692 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~ 692 (861)
+.+..+...++++.+.+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 445666666666666666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0067 Score=51.41 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 555 VISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 555 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555555555552 332 3345555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0056 Score=65.68 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=61.6
Q ss_pred hcCChHHHHHHHHHHHHc---CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 002975 567 KHGFAARALEIFYKMLAD---GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRS 639 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~ 639 (861)
..|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 456777777777776552 233442 3566666677777777777766665542
Q ss_pred CCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCchH
Q 002975 640 GSLTEALEFIRSM--PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAAH 695 (861)
Q Consensus 640 g~~~eA~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 695 (861)
++++. +..|+ ..+++.|...|...|++++|+..++++++ +.|+++.+-
T Consensus 369 --------i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 369 --------PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp --------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred --------HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 11111 13344 34677777888888888888888888776 466665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0062 Score=53.66 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCce
Q 002975 655 SADVLVWRTFLGACRVHG---DTELGKHAAEMILEQD-P-QDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGC 729 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~ 729 (861)
.++..+...+.+++.+.+ +.++|+..++.+++.+ | ++...++.|+-.|++.|++++|.+..+.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--------- 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--------- 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh---------
Confidence 456677777777777766 5668888888888877 6 4567778888888888888888888887765
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 002975 730 SWIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYL 771 (861)
Q Consensus 730 s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 771 (861)
..|...+...-.+.+.+++++.|.+
T Consensus 100 -----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 -----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2354555555555566677777754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.012 Score=63.23 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=67.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 002975 561 MITGFAKHGFAARALEIFYKMLAD---GIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV 633 (861)
Q Consensus 561 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 633 (861)
.+..+.+.|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..+++++.+-
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 344555667777777777777653 133442 35666666777777777777766655421
Q ss_pred HHhhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----cCCCCCchHHHH
Q 002975 634 DLLGRSGSLTEALEFIRSM--PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILE-----QDPQDPAAHILL 698 (861)
Q Consensus 634 ~~~~r~g~~~eA~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~L 698 (861)
+++. +..|+ ..+++.|...|...|++++|+..++++++ +.|+++.+-..+
T Consensus 359 ---------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 359 ---------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp ---------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred ---------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1111 13333 34667777888888888888888888776 467776555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.045 Score=56.21 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCCChHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHh----hhcC-------CHHHHHHH
Q 002975 586 IKPNGITYIAVLSACS--HAG---LISEGWKHFRSMYDEHGIVQRM-EHYACMVDLL----GRSG-------SLTEALEF 648 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~--~~g---~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~----~r~g-------~~~eA~~~ 648 (861)
.+.|...|..++.+.. ..+ ...+|+.+|++.. .+.|+- ..|..+.-+| ...+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445667776666543 333 3578999999988 446753 2333222211 1111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 649 IRSMP-LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 649 ~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
...+. .+.++.+|.++.-.+...|+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 23333 345788888888888888999999999999999997 4678899999999999999999999877653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.34 Score=40.83 Aligned_cols=140 Identities=8% Similarity=0.031 Sum_probs=93.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 34577777777777776632 2222222332222333334444444444332222 346677777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 646 LEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 646 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
...+-.+. -+....+-.+......|..+.-..+...++.-+|-++...+.++++|.+.|.-.+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666652 233445566778889999999999999988888888999999999999999999999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.099 Score=61.81 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=20.2
Q ss_pred HcCCHHHHHH-HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 002975 435 RSGRMEDARK-AFESLFEKNLVSYNTMVDAYAKNLNSEKAFELL 477 (861)
Q Consensus 435 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 477 (861)
..+++++|.+ ++..++.. .....++..+.+.|..++|+++.
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecC
Confidence 4566666665 44333201 11244555555566666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=66.43 Aligned_cols=311 Identities=11% Similarity=0.102 Sum_probs=173.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CccchHHHH
Q 002975 246 KNTVGWTLMITRCTQLGCPRDAIRLFLDMILSGFLPDRFTLSGVVSACSELELFTSGKQLHSWAIRTGLA-LDVCVGCSL 324 (861)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~l 324 (861)
.++.+|-.+-.+|+..+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++..+ |++ ....+++-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 4788999999999999998877554433332 122 23345555777788887777766544 332 345578888
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCC----C-------CcccHHHHHHHHHhcCCChHHHHHHHHHHhhC-----------
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLD----H-------NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQG----------- 382 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~----------- 382 (861)
.-.|+|.. .++-.+-++..-. | ....|.-++-.|.+... ++.|... |.+.
T Consensus 270 aILYsKY~----PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE-~DnA~lt---Mi~h~~~Aw~h~~Fk 341 (624)
T 3lvg_A 270 AILYSKFK----PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAIIT---MMNHPTDAWKEGQFK 341 (624)
T ss_dssp HHHHHSSC----TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC-HHHHHHT---TTSCHHHHCCGGGGT
T ss_pred HHHHHhcC----HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh-HHHHHHH---HHhCChhhccHHHHH
Confidence 88898864 3443333332211 2 34568888888888877 7766432 2221
Q ss_pred ---CCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHH-
Q 002975 383 ---QVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYN- 458 (861)
Q Consensus 383 ---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 458 (861)
.-..|...|-..+.-|.... +..--.++.-+. ..+.+ +..++++.+.|++.-...++..+...|...-|
T Consensus 342 dii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNe 414 (624)
T 3lvg_A 342 DIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNE 414 (624)
T ss_dssp TTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHH
T ss_pred HHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHH
Confidence 01234444444444443321 111111111110 00111 23455566666666666666666555554443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 002975 459 TMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA 538 (861)
Q Consensus 459 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 538 (861)
++-..|....+++.- ..-+..|-+-..+..|.++ .+ ..-...-..-...|.+.+
T Consensus 415 Aln~L~IEEEDy~~L-------------------R~SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 415 SLNNLFITEEDYQAL-------------------RTSIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp HHHHHHHHTTCCHHH-------------------HHTTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHH-------------------HHHHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcc
Confidence 344455555555421 1222233333333333332 11 112223334455688899
Q ss_pred CHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 002975 539 NVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKH 612 (861)
Q Consensus 539 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 612 (861)
+|+++..+.++=. .|.-.|...+..|+.+-|.++++-..+.| +...|.+.+-.|...=+.|.++++
T Consensus 469 rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 469 RWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 9999887654321 12223445567888999999999888866 557888888888887777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=56.25 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHc-CChhH
Q 002975 642 LTEALEFIRSM-PLSAD---VLVWRTFLGACRV-----HGDTELGKHAAEMILEQDPQD-PAAHILLSNLYASA-GHWEY 710 (861)
Q Consensus 642 ~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~y~~~-g~~~~ 710 (861)
..+|...+++. .+.|+ ...|.+|+..|.. -|+.++|++.++++++++|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555443 24555 5678888888877 489999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 002975 711 VANIRKRMKERNLIKEAG 728 (861)
Q Consensus 711 a~~~~~~m~~~~~~~~~~ 728 (861)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877665454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.042 Score=45.43 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 002975 656 ADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLS 699 (861)
Q Consensus 656 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 699 (861)
+...++..|..++.+.|+.+.|...++++++++|++..+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34678889999999999999999999999999999977755543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.11 Score=61.54 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=67.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 002975 528 NALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLIS 607 (861)
Q Consensus 528 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 607 (861)
..++..+.+.|..++|.++.+... .-.......|++++|.++.+.+ .+...|..+...|.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 445555555555555554442110 0112233455555555543221 23445555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQ 687 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 687 (861)
.|.+.|..+. + |..+..++...|+.+ .+..+...+...|+.+.|..++.++
T Consensus 699 ~A~~~y~~~~-d---------~~~l~~l~~~~~~~~----------------~~~~~~~~a~~~~~~~~A~~~~~~~--- 749 (814)
T 3mkq_A 699 LAIEAFTNAH-D---------LESLFLLHSSFNNKE----------------GLVTLAKDAETTGKFNLAFNAYWIA--- 749 (814)
T ss_dssp HHHHHHHHHT-C---------HHHHHHHHHHTTCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHcc-C---------hhhhHHHHHHcCCHH----------------HHHHHHHHHHHcCchHHHHHHHHHc---
Confidence 5555554443 1 122222222233222 2233334444455555555443331
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 002975 688 DPQDPAAHILLSNLYASAGHWEYVANIRK 716 (861)
Q Consensus 688 ~p~~~~~~~~L~~~y~~~g~~~~a~~~~~ 716 (861)
+-+....++|.+.++|++|..+.+
T Consensus 750 -----g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 -----GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp -----TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHcCChHHHHHHHH
Confidence 223344566888888888888766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.19 Score=44.23 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHH
Q 002975 571 AARALEIFYKMLADGIKPNGITYIAVLSACSHAG---LISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALE 647 (861)
Q Consensus 571 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~ 647 (861)
...+.+.|.+..+.|. ++..+-..+..++.+.+ ++++|+.+|+...+.. .|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~---------------------- 68 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE---------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH----------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc----------------------
Confidence 3455566666666553 56666666888888877 5668888887776321 121
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 648 FIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 648 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
-+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+..+
T Consensus 69 --------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 69 --------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp --------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 012344567777899999999999999999999988655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.15 Score=40.96 Aligned_cols=68 Identities=7% Similarity=-0.024 Sum_probs=51.2
Q ss_pred CChhHHHHHHHHhhhcCC---HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 624 QRMEHYACMVDLLGRSGS---LTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~---~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
.+...+..+..++...++ .++|..++++.. ..| ++..+..+...+...|+++.|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455666666666654443 678888887763 344 56677778888999999999999999999999984
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.54 Score=42.44 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=74.0
Q ss_pred HHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 002975 532 SMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 532 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
+....+|+++.|.++.+++ .+...|..|......+|+++-|...|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888887777665 4566788888888888888888877766543 2223333444566554443
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMI 684 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 684 (861)
+-+... ..| -++.-...+.-.|+++++.+++.+...-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333222 111 12333344556778888887777764322211 1234566666666665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.13 Score=43.39 Aligned_cols=68 Identities=9% Similarity=-0.062 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHhhhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Q 002975 624 QRMEHYACMVDLLGRSGSLTE---ALEFIRSMPLS--A--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD 691 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~e---A~~~~~~~~~~--p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 691 (861)
++..+--.+.-+|.+..+..+ ++.+++..-.. | .-...-.|.-++.+.|+++.|.+.++.+++.+|+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444443334444444444333 55555544211 1 11122233344555555555555555555555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.11 Score=59.01 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=50.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 665 LGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 665 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
..-|...|+++.|..++++++..-|++..++..|+.+|...|+|+.|.-..+.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344778899999999999999999999999999999999999999999988876
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.85 Score=39.20 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 002975 655 SADVLVWRTFLGACRVHG---DTELGKHAAEMILEQDPQD-PAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCS 730 (861)
Q Consensus 655 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 730 (861)
.|+..+--.+.+++.+.. +..+|+.+++.++...|.+ -...+.|+-.|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 455555555666665554 4556777777777777743 34556777788888888888887776665
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 002975 731 WIEADNKVHKFHVGETSHPKTLEIYAELDQLALKIKEFGYL 771 (861)
Q Consensus 731 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 771 (861)
..|...+...--..+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 2355555544455556677777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=1.4 Score=39.66 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=59.7
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHH
Q 002975 432 MYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQI 511 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 511 (861)
...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777777665 3456788888887888888888777777653 22334444445555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhc
Q 002975 512 HARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEM 550 (861)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 550 (861)
-+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444433 1 233333444556666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.63 Score=38.13 Aligned_cols=63 Identities=14% Similarity=-0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQD-------PQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.-.-.|+..+...|+++.|+.-++++++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445567888888899999999998888753 23456788999999999999999999998865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=1.3 Score=43.54 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred ccCCHHHHHHHHHhccCCCc--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNV--ISWTSMIT-GFAKH--GF------AARALEIFYKMLADGIKPN---GITYIAVLSACS 601 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~ 601 (861)
+.|+..+-.+.+.++...|+ ..|..++. +++.. |. ..+|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34444444555555543333 46666554 33332 22 4566777777777 5666 446777777777
Q ss_pred hc-----CCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 002975 602 HA-----GLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRS-GSLTEALEFIRSM 652 (861)
Q Consensus 602 ~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~-g~~~eA~~~~~~~ 652 (861)
.. |+.++|.++|++.. .+.| +..++....+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 77777777777776 2344 255555555655553 5566666555553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.67 E-value=5.6 Score=33.71 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=52.1
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
+||++......+-.+. .+....+..+..+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555544442 2334455566777777887777777777533 2466777777788888888888888887777
Q ss_pred HH
Q 002975 616 MY 617 (861)
Q Consensus 616 m~ 617 (861)
.-
T Consensus 151 AC 152 (172)
T 1wy6_A 151 AC 152 (172)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.31 E-value=1.4 Score=46.51 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=193.2
Q ss_pred CCcchHHHHH-HHhhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCcchhHHHHHHHHHcCCCCCcchHHHHH
Q 002975 42 TSEPLSNRLI-YHLNDGRVQKAIFTLDLMTQKGNHPDLDTYSLLLKSCIRSRNFHLGKLVHSLLTRSKLEPNSVILNSLI 120 (861)
Q Consensus 42 ~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 120 (861)
..+..|+++. +.+..+++.+|+.-|-+ .-|+..|..++.++.+.|.++.-...+...++.. .++.+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 3445555555 77788888888865522 2366778888888888888888877766665542 3455566788
Q ss_pred HHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCc
Q 002975 121 SLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLEL--------------------GFCPNE 180 (861)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p~~ 180 (861)
-+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+..- .-.-+.
T Consensus 124 ~ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88888776554222221 133333333333333333333333333221100 001234
Q ss_pred ccHHHHHHHhcCC------------------------------cchhhhhhhhhhhhhccCCCCchhHHHHHHHHhhhCC
Q 002975 181 YCFSAVIRACSNT------------------------------ENVAIGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGS 230 (861)
Q Consensus 181 ~t~~~ll~~~~~~------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 230 (861)
.||-.+-.+|... |.+++-..+++..+.. .....-+++-|.=.|+| -
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsK-Y 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSK-F 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHS-S
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHh-c
Confidence 4555555555444 4444444444444321 13455677777777777 3
Q ss_pred CCHHHHHHHHhcCC----CC-------CcchHHHHHHHHHhcCCchHHHHHHHHHHHC-----------C---CCCCccc
Q 002975 231 VDLESAYKVFDKMT----EK-------NTVGWTLMITRCTQLGCPRDAIRLFLDMILS-----------G---FLPDRFT 285 (861)
Q Consensus 231 g~~~~A~~~f~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------g---~~pd~~t 285 (861)
+.++-.+-++..- -| ....|.-++-.|.+-..++.|... |.+. . -..|...
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~Ei 352 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVEL 352 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHH
Confidence 2333333332211 12 445688888888887777766543 2211 0 0123334
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCccchHHHHHHHHHhCCCCCCHHHHHHHHhccCCCCcccHH-HHHHHHHh
Q 002975 286 LSGVVSACSELELFTSGKQLHSWAIRTGLALDVCVGCSLVDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWT-AIITGYVQ 364 (861)
Q Consensus 286 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~ 364 (861)
|-..|..|....-. .--.++.-+ ....|. +..++++.+.|. +......+..+...|...-| ++-..|..
T Consensus 353 yYKAi~FYL~e~P~-lL~DLL~vL---~prlDh---~RvV~~~~k~~~---LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 353 YYRAIQFYLEFKPL-LLNDLLMVL---SPRLDH---TRAVNYFSKVKQ---LPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp HHHHHHHHTTSCCT-TSHHHHHHH---CTTCCS---TTTHHHHHTTTC---GGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChH-HHHHHHHhc---cccCCh---HHHHHHHHhcCC---chhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444444332110 000000000 001111 123344444443 55555555555555544433 44455555
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHH
Q 002975 365 SGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARK 444 (861)
Q Consensus 365 ~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (861)
..+ ++. ++.- +..|-+-.....|.++= ++ .-...-..-...|.+.++++++..
T Consensus 423 EED-y~~----LR~S---------------Id~ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 423 EED-YQA----LRTS---------------IDAYDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp TTC-CHH----HHHT---------------TSSCCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred hhh-HHH----HHHH---------------HHHhccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHHHH
Confidence 554 321 1111 22222233333333221 11 111122233455677777777765
Q ss_pred HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHH
Q 002975 445 AFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQI 511 (861)
Q Consensus 445 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 511 (861)
+..+= ..|--.|..-+..|+.+-|.++++-..+.| +...|...+-.|...=+.+.+.++
T Consensus 476 l~KkD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 44221 122223344455666666766666666554 334566666666666555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.96 Score=38.35 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 657 DVLVWRTFLGACRVHG---DTELGKHAAEMILEQDPQ-DPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 657 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++.+--.+.+++.+.. +...|+.+++.+++.+|. .-..+..|+-.+.+.|++++|.+..+.+.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333334444443333 334555555555555553 233444555566666666666665555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.45 E-value=3.2 Score=34.95 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=58.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCC--ChhHHHHHHHHhhhcC
Q 002975 566 AKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISE---GWKHFRSMYDEHGIVQ--RMEHYACMVDLLGRSG 640 (861)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~r~g 640 (861)
........+.+-|.+....|. |+..+-..+..++.+.....+ |+.+++...+. -.| ..+..-.|.-++.|.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhh
Confidence 333445556666666666553 666666668888888877655 88888887632 123 2233344566788999
Q ss_pred CHHHHHHHHHhCC-CCCC
Q 002975 641 SLTEALEFIRSMP-LSAD 657 (861)
Q Consensus 641 ~~~eA~~~~~~~~-~~p~ 657 (861)
++++|.++++.+. .+|+
T Consensus 89 ~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 9999999988763 4554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=36 Score=37.85 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcC-CCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 569 GFAARALEIFYKMLADG-IKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.+.+.|..+|....+.+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+.+.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998887543 222221 223333333444535566677766542 223333333344455578999999
Q ss_pred HHHHHhCCCCC-CHHHHH-HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 646 LEFIRSMPLSA-DVLVWR-TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 646 ~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
...|+.|+..+ +..-|. =+..+....|+.+.|...++++.+ + .+.|-.|
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 99999997443 222222 244566778999999999999875 3 2455555
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.39 E-value=25 Score=35.08 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHH----HHHHhhcCCCCCHHHHHHHHHHhhccc
Q 002975 428 SLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFEL----LHEIEDTGVGTSAYTFASLLSGASSIG 503 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 503 (861)
++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++-..+.++++|..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3444577788888888776542 3445566776665554 444455678888888777777765533
Q ss_pred chH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhc---CChHH
Q 002975 504 AIG-KGEQIHARIIK----SG--FESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKH---GFAAR 573 (861)
Q Consensus 504 ~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 573 (861)
.-+ .-..+...+++ .| -.-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 111 12333344432 22 1247788888999999999999998877633323455555555444333 33333
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002975 574 ALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619 (861)
Q Consensus 574 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 619 (861)
+ |...-.+++ -|.-.|++..|..+|+...+.
T Consensus 187 ~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 V--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2 111112232 234578888888888876533
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.01 E-value=6.7 Score=30.99 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..++|..|-+-+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333333445677899999999999999999999977644 477888888877777777
Q ss_pred cCCCCChHHHH
Q 002975 584 DGIKPNGITYI 594 (861)
Q Consensus 584 ~g~~p~~~t~~ 594 (861)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.06 E-value=7.9 Score=40.49 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccC
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE-----RNLIKE 726 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~ 726 (861)
+...++.++...|+.+.+...++.++..+|-+...|..|..+|...|+..+|.+.++..++ .|+.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455677788899999999999999999999999999999999999999999998887643 366544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.92 E-value=6.3 Score=31.08 Aligned_cols=86 Identities=10% Similarity=0.046 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLA 583 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 583 (861)
..++|..|-+-+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333333445677899999999999998999999977643 578888888888878887
Q ss_pred cCCCCChHHHH
Q 002975 584 DGIKPNGITYI 594 (861)
Q Consensus 584 ~g~~p~~~t~~ 594 (861)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 56555554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=84.66 E-value=55 Score=36.53 Aligned_cols=84 Identities=7% Similarity=0.029 Sum_probs=47.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc---
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR--- 536 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--- 536 (861)
....+.-.|+++.|++.+... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 456667789999999887754 35667777776665544432 11111110 01 11 2236678888875
Q ss_pred cCCHHHHHHHHHhccCCC
Q 002975 537 CANVEAAFQVFKEMEDRN 554 (861)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~ 554 (861)
..+..+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 478888888887765443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.36 E-value=6 Score=35.02 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMPL 654 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~~ 654 (861)
+.---+...|...|+.++|+..++.+|.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3333455667777777777777777763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.44 E-value=21 Score=38.09 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHhh-----CCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 002975 366 GGRDKEAVKLFSDMIQ-----GQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVK 416 (861)
Q Consensus 366 g~~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 416 (861)
++ +++|++.+..+.+ ....-.......++..|...++++...+.+..+.+
T Consensus 30 ~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 ND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55 7777777655543 12333445566677777777777777666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.44 E-value=5.6 Score=35.23 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=62.2
Q ss_pred cCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC--
Q 002975 584 DGIKPNGI--TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-------EHYACMVDLLGRSGSLTEALEFIRSM-- 652 (861)
Q Consensus 584 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~l~~~~~r~g~~~eA~~~~~~~-- 652 (861)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46666543 44455666777788888877776655433333432 24555667777777777777777663
Q ss_pred -----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 002975 653 -----PLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRM 718 (861)
Q Consensus 653 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m 718 (861)
+..+.. ..++ +. ......-..+ +.+.+.-+.++.+|.+.|++++|..+.+.+
T Consensus 92 ~~k~l~k~~s~--~~~~-------~~----~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPST-------GN----SASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--cccc-------cc----cCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 0000 00 0000000111 223356678999999999999999988754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.67 E-value=58 Score=34.55 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCC----hhH
Q 002975 559 TSMITGFAKHGFAARALEIFYKMLAD--GIKPN---GITYIAVLSACSHAGLISEGWKHFRSMYDE-HGIVQR----MEH 628 (861)
Q Consensus 559 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 628 (861)
..|...|...|++.+|..++.++... |.... ...+...+..|...+++..|..+++++... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45778888999999999999998754 22222 235666777899999999999999887421 222222 245
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 629 YACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 629 ~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
|.+++.++...+++.+|...|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788889999999999998877665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.59 E-value=7.6 Score=30.91 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 002975 570 FAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVD 634 (861)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 634 (861)
+.-+...-++.+....+.|++....+.+.||.+.+++.-|.++|+.++.+.|-. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566667777777889999999999999999999999999999887655444 456766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.53 E-value=45 Score=40.55 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=83.3
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---C------------------
Q 002975 495 LLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---R------------------ 553 (861)
Q Consensus 495 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------------------ 553 (861)
++..+...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|++... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 334444455555444433221 33333334556677777888888888776531 0
Q ss_pred -----CchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 002975 554 -----NVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG----ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ 624 (861)
Q Consensus 554 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 624 (861)
-..-|.-++..+-++|.++.++++-+..++....-+. ..|..+..++...|++++|...+-.+. +. .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~--~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TT--PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HS--SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CH--HH
Confidence 0112556677777888888888777766664211111 146677788888888888877776664 21 22
Q ss_pred ChhHHHHHHHHhhhcCCHHHH
Q 002975 625 RMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 625 ~~~~~~~l~~~~~r~g~~~eA 645 (861)
.......+|..++..|.+++=
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 345566666666666665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.13 E-value=13 Score=29.57 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 649 IRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 649 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
+-.+..-|++.+..+.+.+||+.+|+..|.+.+|-+...-.+...+|-.+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 33445789999999999999999999999999998887655445556544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.01 E-value=23 Score=29.99 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 002975 586 IKPNGITYIAVLSACSHAGLI---SEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWR 662 (861)
Q Consensus 586 ~~p~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~ 662 (861)
-.|+..|-..+..++.+.... .+|+.+++.+.+.. |. -.-..+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~------------------------------~~Rd~LY 82 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ES------------------------------RRRECLY 82 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GG------------------------------GHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cc------------------------------hhHHHHH
Confidence 355655655577777776653 45666666655221 11 0123444
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHH
Q 002975 663 TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHI 696 (861)
Q Consensus 663 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 696 (861)
-|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 5667889999999999999999999998854433
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=80.60 E-value=44 Score=37.36 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=39.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH--
Q 002975 358 IITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYAR-- 435 (861)
Q Consensus 358 li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~-- 435 (861)
....+.-.|+ ++.|++++... ...|.+.+...+.-+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgq-FE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGL-YGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhh-HHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3445556687 88888877654 34566666666665543332 11111110 00 11 2234556666654
Q ss_pred -cCCHHHHHHHHHhc
Q 002975 436 -SGRMEDARKAFESL 449 (861)
Q Consensus 436 -~g~~~~A~~~~~~~ 449 (861)
..+..+|.++|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46677777766555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.27 E-value=95 Score=36.17 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHHcCCHHHHHHHHHhcCCC-Ce--ehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH-HHH---HHHHHhhcccch
Q 002975 433 YARSGRMEDARKAFESLFEK-NL--VSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY-TFA---SLLSGASSIGAI 505 (861)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~~~~ 505 (861)
|.-.|+-+....++..+.+. +. .-.-++.-++...|+.+.+..+++.+... .|.. -|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 33455555555555443211 11 11222223344566666666666666542 1221 222 233456667776
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhcc-CCCchHHHH--HHHHHHhcCCh-HHHHHHHHHH
Q 002975 506 GKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEME-DRNVISWTS--MITGFAKHGFA-ARALEIFYKM 581 (861)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m 581 (861)
....+++..+.... ..++.-...+.-+..-.|+.+.+.++++.+. ..|...-.. +.-|....|.. .+|++++..+
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 66666666665532 2222222222223333455555555555443 233332222 22233333333 4666666666
Q ss_pred HH
Q 002975 582 LA 583 (861)
Q Consensus 582 ~~ 583 (861)
..
T Consensus 656 ~~ 657 (963)
T 4ady_A 656 TK 657 (963)
T ss_dssp HT
T ss_pred cc
Confidence 54
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 861 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 18/187 (9%), Positives = 61/187 (32%), Gaps = 10/187 (5%)
Query: 526 IYNALISMYSRCANVEAAFQVFKEMEDRNVI---SWTSMITGFAKHGFAARALEIFYKML 582
Y L ++ + A + + ++ + + G A++ + + +
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 583 ADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGS 641
++P+ Y + +A G ++E + + + + ++ G+
Sbjct: 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGN 320
Query: 642 LTEALE-FIRSMPLSADVLVWRTFLGACRVH-GDTELGKHAAEMILEQDPQDPAAHILLS 699
+ EA+ + +++ + + + L + G + + + P A+ +
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Query: 700 NLYASAG 706
N
Sbjct: 381 NTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 861 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.69 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.56 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.87 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.39 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-18 Score=185.98 Aligned_cols=362 Identities=11% Similarity=0.062 Sum_probs=256.6
Q ss_pred HHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHhcccCChHHHHHHHHH
Q 002975 337 VDDSRKVFDRMLD--H-NVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQVAPNHFTFASVLKACGNLLDSNVAEQVYTH 413 (861)
Q Consensus 337 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 413 (861)
+++|.+.|+++.+ | +...|..+...|.+.|+ +++|+..|++..+.. +-+..++..+...+...|++++|...+..
T Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 92 (388)
T d1w3ba_ 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccc
Confidence 5555555554422 1 33445555555555555 666666666554421 11334455555555566666666666665
Q ss_pred HHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHH
Q 002975 414 AVKRGRALDDCVGNSLISMYARSGRMEDARKAFESL---FEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAY 490 (861)
Q Consensus 414 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 490 (861)
..+... .+..........+...+....+....... .......+..........+....+...+.+..... +-+..
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (388)
T d1w3ba_ 93 ALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhH
Confidence 555432 12222222233333333333333322222 22334445555566667777777777777766542 33456
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHh
Q 002975 491 TFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAK 567 (861)
Q Consensus 491 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 567 (861)
.+..+...+...|..+.|...+...++.. +.+...+..+...|...|++++|...|+.... .+...|..+...+.+
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence 77777788888899999999998888765 45677888999999999999999999987763 456778888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 002975 568 HGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEAL 646 (861)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~ 646 (861)
.|++++|+..|++.++ ..|+ ..++..+..++...|++++|.+.++..... .+.+...+..+...+.+.|++++|+
T Consensus 250 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp TTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHH
Confidence 9999999999999998 5665 568888999999999999999999988743 3446677888899999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 002975 647 EFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGH 707 (861)
Q Consensus 647 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~ 707 (861)
+.+++. ...| ++.+|..+..++...|++++|+..++++++++|+++.+|..|+++|.+.|+
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999986 3455 577889999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-18 Score=186.20 Aligned_cols=352 Identities=14% Similarity=0.124 Sum_probs=287.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcC
Q 002975 359 ITGYVQSGGRDKEAVKLFSDMIQGQVAP-NHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSG 437 (861)
Q Consensus 359 i~~~~~~g~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 437 (861)
...+.+.|+ +++|++.|+++.+. .| +...+..+...+...|++++|...+..+++.. +.+..++..+..+|.+.|
T Consensus 6 a~~~~~~G~-~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 6 AHREYQAGD-FEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 345667798 99999999999874 35 56677778888999999999999999998875 455678888999999999
Q ss_pred CHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHH
Q 002975 438 RMEDARKAFESLFE---KNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHAR 514 (861)
Q Consensus 438 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 514 (861)
++++|...+....+ .+...+..........+....+............. ...............+....+......
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 99999999988743 23344555555566666667776666666554433 334444455556667777778777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 002975 515 IIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI 591 (861)
Q Consensus 515 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (861)
..... +.+...+..+...+...|++++|...++...+ .+..+|..+...+...|++++|+..|++....+ ..+..
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 77664 55677888899999999999999999997763 356788999999999999999999999998854 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGAC 668 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~ 668 (861)
.+..+..++...|++++|...|++..+ +.| +...+..+..++.+.|++++|++.++... .+.+...+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 788889999999999999999999873 344 45778889999999999999999998863 455778899999999
Q ss_pred HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 669 RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 669 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+++.|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.9e-13 Score=138.47 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=153.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 002975 460 MVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCAN 539 (861)
Q Consensus 460 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 539 (861)
....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.++++.. +.+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4455667777777777777766542 1234455555555555555555555555555543 2334444555555555555
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH----------------HHHHHHHHHHhc
Q 002975 540 VEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGI----------------TYIAVLSACSHA 603 (861)
Q Consensus 540 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~a~~~~ 603 (861)
+++|.+.++. ... ..|+.. .....+..+...
T Consensus 103 ~~~A~~~~~~-------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (323)
T d1fcha_ 103 QRQACEILRD-------------------------------WLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 149 (323)
T ss_dssp HHHHHHHHHH-------------------------------HHH--TSTTTGGGCC---------------CTTHHHHHH
T ss_pred ccccccchhh-------------------------------HHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHHh
Confidence 5555555554 433 112100 011112233345
Q ss_pred CCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002975 604 GLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LS-ADVLVWRTFLGACRVHGDTELGKHAA 681 (861)
Q Consensus 604 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 681 (861)
+..+++...|....+...-.++...+..+...+.+.|++++|++.+++.. .. .+..+|..++..+...|+.+.|+..+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHH
Confidence 66778888888777544444566778888889999999999999998863 33 35789999999999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 682 EMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 682 ~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+++++++|+++.++..|+.+|...|++++|.+.+++..+
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987755
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.5e-12 Score=131.85 Aligned_cols=266 Identities=9% Similarity=0.003 Sum_probs=190.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q 002975 428 SLISMYARSGRMEDARKAFESLFE--K-NLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGA 504 (861)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 504 (861)
-....+.+.|++++|...|+++.+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678899999999999999843 3 45689999999999999999999999988753 3356788888899999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002975 505 IGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLAD 584 (861)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 584 (861)
+++|.+.+..+...... ............. ..+.......+..+...+...+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998875321 1111000000000 001111111223334556677888888888773
Q ss_pred CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHH
Q 002975 585 GI-KPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVW 661 (861)
Q Consensus 585 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~ 661 (861)
.. .++...+..+...+...|++++|...|+...... +-+...|..+...|.+.|++++|++.++++. ..| ++.+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 21 2235567778888888999999999998887332 2245677888889999999999999988763 344 57789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH-----------HHHHHHHHHcCChhHHHH
Q 002975 662 RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH-----------ILLSNLYASAGHWEYVAN 713 (861)
Q Consensus 662 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~L~~~y~~~g~~~~a~~ 713 (861)
..++.+|...|++++|+..++++++++|++...+ ..|..++...|+++.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999887643 446677777888776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2e-08 Score=104.11 Aligned_cols=259 Identities=10% Similarity=-0.024 Sum_probs=173.7
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCC----HHHHHHHHHHhhcccchHHHHHHHHHHHHhC--CC---CchhHHHHHHH
Q 002975 462 DAYAKNLNSEKAFELLHEIEDTGVGTS----AYTFASLLSGASSIGAIGKGEQIHARIIKSG--FE---SNHCIYNALIS 532 (861)
Q Consensus 462 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~ 532 (861)
..+...|++++|++++++........+ ...+..+...+...|++++|...+..+.+.. .. .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345566666666666666654321111 1244455556666677777777666654421 11 11334556667
Q ss_pred HHHccCCHHHHHHHHHhccC-------CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChHHHHHHH
Q 002975 533 MYSRCANVEAAFQVFKEMED-------RN----VISWTSMITGFAKHGFAARALEIFYKMLADGIK----PNGITYIAVL 597 (861)
Q Consensus 533 ~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll 597 (861)
.|...|++..|...+..... +. ...+..+...+...|+++.+...+++....... ....++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 78888888888877775531 11 124555667788889999999998888764322 1234556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQR-----MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-----DVLVWRTFLG 666 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-----~~~~~~~ll~ 666 (861)
..+...|...++...+........-... ...+..+...+...|+.++|.+.+++.. ..| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7777888888888888776543322221 2235556678889999999999998863 111 2456667888
Q ss_pred HHHHhCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 667 ACRVHGDTELGKHAAEMILE------QDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 667 ~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
++...|+.+.|...++++++ ..|+...++..++.+|...|++++|.+.++...+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999874 4456677889999999999999999998886643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=5.1e-09 Score=103.52 Aligned_cols=221 Identities=10% Similarity=0.004 Sum_probs=146.7
Q ss_pred ChhHHHHHHHHHhhcCCCC---CHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHH
Q 002975 469 NSEKAFELLHEIEDTGVGT---SAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQ 545 (861)
Q Consensus 469 ~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 545 (861)
+.+.++.-+++........ ...++..+...+.+.|++++|.+.+...++.. +.++.+++.+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455566666665432211 12356666777888888888888888888875 5678889999999999999999999
Q ss_pred HHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 002975 546 VFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHG 621 (861)
Q Consensus 546 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 621 (861)
.|+++.+ .+..+|..+...|...|++++|+..|++.++. .|+ ......+..++.+.+..+....+......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 167 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 167 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---
Confidence 9998873 34668888999999999999999999999884 454 44444444455566655555555555442
Q ss_pred CCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH
Q 002975 622 IVQRMEHYACMVDLLGR----SGSLTEALEFIRSMP-LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH 695 (861)
Q Consensus 622 ~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 695 (861)
..+....+. ++..+.. .+..+.+...+.... ..|+ ..+|..|...+...|+.+.|+..++++++.+|++...|
T Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 168 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222222 2222222 222333332221110 1222 34677788899999999999999999999999986555
Q ss_pred H
Q 002975 696 I 696 (861)
Q Consensus 696 ~ 696 (861)
.
T Consensus 247 ~ 247 (259)
T d1xnfa_ 247 R 247 (259)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=9e-09 Score=104.65 Aligned_cols=211 Identities=9% Similarity=0.090 Sum_probs=134.4
Q ss_pred HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHHhcc---CCCchHHHHHHHHHHhcCChHH
Q 002975 498 GASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCA-NVEAAFQVFKEME---DRNVISWTSMITGFAKHGFAAR 573 (861)
Q Consensus 498 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 573 (861)
.+.+.+..++|.++++.+++.+ +.+...|+....++...| ++++|+..++... ..+..+|+.+...+...|++++
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence 3444445555555555555543 445556666666666655 3677777777655 2345677777777777777777
Q ss_pred HHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCC------HHHH
Q 002975 574 ALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGS------LTEA 645 (861)
Q Consensus 574 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~------~~eA 645 (861)
|++.++++++ ..|+ ...|..+...+.+.|++++|++.|+.+.+ +.| +...|+.+..++.+.|. +++|
T Consensus 131 Al~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 131 ELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 7777777777 4454 55777777777777777777777777763 334 34455555555444443 6778
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchH--HHHHHHHHHc--CChhHHHHHH
Q 002975 646 LEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAH--ILLSNLYASA--GHWEYVANIR 715 (861)
Q Consensus 646 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~L~~~y~~~--g~~~~a~~~~ 715 (861)
++.+.++ ...| +...|..+...+... ..+.+...++++++++|+....+ ..++.+|... +..+.+...+
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8777765 2334 678888887776544 45788899999999988765544 4677777553 4444444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.9e-09 Score=105.08 Aligned_cols=191 Identities=9% Similarity=0.099 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCC-hHHHHHHHH
Q 002975 524 HCIYNALISMYSRCANVEAAFQVFKEMED--R-NVISWTSMITGFAKHG-FAARALEIFYKMLADGIKPN-GITYIAVLS 598 (861)
Q Consensus 524 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 598 (861)
...++.+...+.+.+..++|+++++.+.+ | +...|+.....+...| ++++|+..+++.++ ..|+ ..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 45566777788899999999999999874 3 5578899888888876 58999999999999 5676 668999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCC--
Q 002975 599 ACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGD-- 673 (861)
Q Consensus 599 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~-- 673 (861)
.+...|++++|+..++.+.+ +.| +...|..+..++.+.|++++|++.++++- ..| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 99999999999999999983 345 46788999999999999999999999874 344 67889888777666554
Q ss_pred ----HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 674 ----TELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 674 ----~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+.|+..++++++++|++..++..++.++...| .+++.+..+...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 688999999999999999999999999887655 5777777766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.4e-07 Score=95.51 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=149.4
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC--C-C-chHHHHHHHHHHhcCChHHHHHHH
Q 002975 503 GAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMED--R-N-VISWTSMITGFAKHGFAARALEIF 578 (861)
Q Consensus 503 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 578 (861)
+..+++..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888999888765566777888899999999999999999998764 2 3 247899999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----C
Q 002975 579 YKMLADGIKPNGITYIAVLSA-CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM----P 653 (861)
Q Consensus 579 ~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~----~ 653 (861)
+++++.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...+...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999854 2233444443332 344689999999999998653 334677888999999999999999999985 2
Q ss_pred CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 654 LSA--DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 654 ~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
..| ...+|...+..-..+|+.+.+..+.+++.++.|++..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 333 2568999999889999999999999999999887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.5e-07 Score=97.25 Aligned_cols=283 Identities=8% Similarity=-0.003 Sum_probs=163.8
Q ss_pred HHHHcCCHHHHHHHHHhcCC--CC------eehHHHHHHHHHhcCChhHHHHHHHHHhhcCC-CCC----HHHHHHHHHH
Q 002975 432 MYARSGRMEDARKAFESLFE--KN------LVSYNTMVDAYAKNLNSEKAFELLHEIEDTGV-GTS----AYTFASLLSG 498 (861)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a 498 (861)
.+...|++++|.++|++..+ |+ ...++.+...|...|++++|+..|++...... .++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555544311 11 12344455555666666666666665543210 111 1233444455
Q ss_pred hhcccchHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHccCCHHHHHHHHHhccC--------CCchHHHHHHH
Q 002975 499 ASSIGAIGKGEQIHARIIKS----GFES---NHCIYNALISMYSRCANVEAAFQVFKEMED--------RNVISWTSMIT 563 (861)
Q Consensus 499 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 563 (861)
+...|++..+...+...... +... ....+..+...|...|+++.|...+..... ....++..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 56666666666666554321 1111 123455566777788888888877776542 11234455566
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--ChhHHHHHHHH
Q 002975 564 GFAKHGFAARALEIFYKMLAD----GIKPN--GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ--RMEHYACMVDL 635 (861)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~ 635 (861)
.+...|+..++...+.+.... +..+. ...+..+...+...|+.++|...++...+...-.+ ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 677788888888777766542 11111 22345556667778888888888877653221111 22345566778
Q ss_pred hhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC---------chHHHH
Q 002975 636 LGRSGSLTEALEFIRSM-------PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDP---------AAHILL 698 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~L 698 (861)
+...|++++|.+.++++ ...|+ ..+|..+..++...|+.+.|+..+++++++.+... ..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~ 340 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 88888888888888765 23333 34677788888999999999999999888754321 122334
Q ss_pred HHHHHHcCChhHHHHH
Q 002975 699 SNLYASAGHWEYVANI 714 (861)
Q Consensus 699 ~~~y~~~g~~~~a~~~ 714 (861)
...+...++.+++.+-
T Consensus 341 ~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 341 LRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHTTCSCHHHHH
T ss_pred HHHHHhcCCChHHHHH
Confidence 4455666777777553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.2e-08 Score=100.61 Aligned_cols=212 Identities=11% Similarity=-0.005 Sum_probs=147.0
Q ss_pred chHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHH
Q 002975 504 AIGKGEQIHARIIKSGF-ES--NHCIYNALISMYSRCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEI 577 (861)
Q Consensus 504 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 577 (861)
+.+.+..-++++..... .+ ...++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34444445555554321 11 345677788999999999999999998773 4678999999999999999999999
Q ss_pred HHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C
Q 002975 578 FYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSGSLTEALEFIRSMP-L 654 (861)
Q Consensus 578 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~ 654 (861)
|+++++ +.|+ ..++..+..++...|++++|...|+...+. .| +......+...+.+.+..+.+..+..... .
T Consensus 94 ~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 94 FDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 999999 5665 568888999999999999999999998843 34 33333334444555555554444433321 1
Q ss_pred CCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 655 SADVLVWRTFLGAC----RVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 655 ~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
.++...+. ++..+ ...+..+.+...+.......|+...+|..|+.+|...|++++|.+.+++....
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22211222 12221 12233455555555555667777888999999999999999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=3.4e-09 Score=109.38 Aligned_cols=230 Identities=9% Similarity=-0.038 Sum_probs=167.6
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhccc--chHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHccCCHHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIG--AIGKGEQIHARIIKSGFESNHCIY-NALISMYSRCANVEA 542 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~ 542 (861)
..|++++|+.+++...... +-+...+..+..++...+ +.+++...+..+++.. +.+...+ ..+...+...+..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3455778888888887653 334555555555555544 5788888888888875 3344444 455577888999999
Q ss_pred HHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002975 543 AFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDE 619 (861)
Q Consensus 543 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 619 (861)
|...++.+.+ .|..+|+.+...+.+.|++++|...+++..+ +.|+... +...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHHh
Confidence 9999998875 3567899999999999999988777766655 3343322 233345566777788777776532
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 620 HGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 620 ~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
. .+....+..++..+...|+.++|.+.+.+. +..| +..+|..++.++...|+.++|+..++++++++|++...|..
T Consensus 238 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 R--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp C--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred C--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 2 233444555677778889999999998876 3444 35688888899999999999999999999999999999998
Q ss_pred HHHHHHH
Q 002975 698 LSNLYAS 704 (861)
Q Consensus 698 L~~~y~~ 704 (861)
|+..+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=7.6e-07 Score=89.90 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHhccC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHH
Q 002975 538 ANVEAAFQVFKEMED----RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN--GITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 538 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 611 (861)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++++. .|. ...|...+..+.+.|.+++|.+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 456788888887653 35567888899999999999999999999984 453 4478899999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHH-hhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDL-LGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~-~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
+|+.+.+... .+...|...... +...|+.+.|..+|+.+. .+.+...|..++......|+.+.|..+++++++..
T Consensus 156 i~~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9999884322 233444444443 344689999999999874 34567899999999999999999999999999988
Q ss_pred CCCCc----hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 689 PQDPA----AHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 689 p~~~~----~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|.++. .+......-...|+.+.+.++.+.+.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76654 455666666778999999999998866
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=1.6e-08 Score=104.16 Aligned_cols=244 Identities=9% Similarity=-0.022 Sum_probs=177.7
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHH-HHH---HHH-------HhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVGTSAYT-FAS---LLS-------GASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMY 534 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~---ll~-------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 534 (861)
..+..++|++++++.... .|+..+ |+. ++. .+...+.++++..+++.+++.. +.+...+..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334457888888887754 455433 221 122 2334566888999999988876 55777777777777
Q ss_pred HccCC--HHHHHHHHHhccC---CCchHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHH
Q 002975 535 SRCAN--VEAAFQVFKEMED---RNVISWTSM-ITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLIS 607 (861)
Q Consensus 535 ~~~g~--~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 607 (861)
...++ +++|...++.+.+ ++...|..+ ...+...|.+++|+..++++++ ..|+ ...|..+..++...|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHH
Confidence 77664 8999999998763 355666544 4677788999999999999988 4564 668888888999999988
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 002975 608 EGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM--PLSADVLVWRTFLGACRVHGDTELGKHAAEMIL 685 (861)
Q Consensus 608 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 685 (861)
+|...++...+. .|. .......+...+..++|...+... ..+++...+..++..+...|+.+.|...+.+++
T Consensus 196 ~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 876655444321 111 112333455566667777766654 233345566677788888999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 686 EQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 686 ~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
+.+|++..++..++.+|...|++++|.+.+++..+
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998866
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.9e-07 Score=77.52 Aligned_cols=89 Identities=9% Similarity=0.002 Sum_probs=74.2
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
-...+.+.|++++|+.+|++.- .+.++..|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3456677788888888887762 34467788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 002975 710 YVANIRKRMKE 720 (861)
Q Consensus 710 ~a~~~~~~m~~ 720 (861)
+|.+.++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998887765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.4e-06 Score=80.70 Aligned_cols=143 Identities=8% Similarity=-0.010 Sum_probs=107.5
Q ss_pred HHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 002975 531 ISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEG 609 (861)
Q Consensus 531 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 609 (861)
...+...|+++.|++.|.++..++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45577889999999999999889999999999999999999999999999999 5565 66888999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Q 002975 610 WKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQD 688 (861)
Q Consensus 610 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 688 (861)
...|++......-.+.. .| ...|. ..+.+ ..++..+..++...|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~~~~n~~~-~~-------~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLI-DY-------KILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEE-EC-------GGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchH-HH-------HHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99998876321111100 00 00000 01111 2456667778888999999999999999988
Q ss_pred CCCCch
Q 002975 689 PQDPAA 694 (861)
Q Consensus 689 p~~~~~ 694 (861)
|+....
T Consensus 151 ~~~~~~ 156 (192)
T d1hh8a_ 151 SEPRHS 156 (192)
T ss_dssp CSGGGG
T ss_pred CCcchH
Confidence 875333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=3.1e-07 Score=86.21 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 002975 624 QRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNL 701 (861)
Q Consensus 624 p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 701 (861)
|+...+...+..|.+.|++++|++.|+++. .+.++.+|..++.+|...|+++.|+..++++++++|+++.+|..+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 344444445555556666666666665542 233556666666667777777777777777777777777777777777
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 002975 702 YASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 702 y~~~g~~~~a~~~~~~m~~ 720 (861)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777666665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.2e-06 Score=78.51 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=73.1
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
....|.+.|++++|++.|+++. .+.+...|..+...+...|+++.|+..++++++++|++..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 3456678888888888887763 34467788888888888899999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHh
Q 002975 710 YVANIRKRMKE 720 (861)
Q Consensus 710 ~a~~~~~~m~~ 720 (861)
+|.+.++....
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.7e-06 Score=72.66 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=70.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHH
Q 002975 598 SACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTE 675 (861)
Q Consensus 598 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~ 675 (861)
..+...|++++|+..|+...+.. +-+...|..+..+|...|++++|++.++++. .+.++..|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 34444555555555555554221 1133445555555555555555555555542 3446788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 676 LGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 676 ~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
.|+..++++++++|+++.++..++++.+
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988887654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=5.1e-07 Score=75.23 Aligned_cols=87 Identities=15% Similarity=0.020 Sum_probs=77.1
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChh
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWE 709 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~ 709 (861)
+...+.+.|++++|+..+++.. ..| ++.+|..++.++...|+.+.|+..++++++++|+++.++..|+.+|...|+++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 4566778888888888888763 344 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002975 710 YVANIRKRM 718 (861)
Q Consensus 710 ~a~~~~~~m 718 (861)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.8e-06 Score=75.95 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=80.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcC
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSG 640 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g 640 (861)
...|.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|...|+.+.+.
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------------------- 73 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------------------- 73 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---------------------
Confidence 4455666666666666666666 3443 345555555666666666666666555421
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HHcCChhHHHHH
Q 002975 641 SLTEALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY--ASAGHWEYVANI 714 (861)
Q Consensus 641 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y--~~~g~~~~a~~~ 714 (861)
.+.+..+|..++.++...|+++.|+..++++++++|+++..+..+..+. ...+.++++...
T Consensus 74 -------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 74 -------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2335678888999999999999999999999999999999888877664 344556666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=4.3e-06 Score=77.20 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=76.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHH
Q 002975 600 CSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELG 677 (861)
Q Consensus 600 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 677 (861)
+...|++++|++.|+.+. +|+...|..+..+|...|++++|++.|++.. .+.++..|..+..++...|+++.|
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 334455555555544321 2334444445555555555555555555442 233567888888888888888888
Q ss_pred HHHHHHHhccCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 002975 678 KHAAEMILEQDPQDP----------------AAHILLSNLYASAGHWEYVANIRKRMKER 721 (861)
Q Consensus 678 ~~~~~~~~~~~p~~~----------------~~~~~L~~~y~~~g~~~~a~~~~~~m~~~ 721 (861)
+..++++++..|.+. ..+..++.+|...|+|++|.+.++...+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888887666543 34668899999999999999998877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=3.3e-06 Score=84.22 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=127.7
Q ss_pred HHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHH
Q 002975 529 ALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFAKHGFAARALEIFYKMLADGI---KPN--GITYI 594 (861)
Q Consensus 529 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~ 594 (861)
...++|..+|++++|.+.|.+..+ .| ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678888899998888887652 22 25788889999999999999999998765311 111 34566
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-------CH-HH
Q 002975 595 AVLSACS-HAGLISEGWKHFRSMYDEHGIVQR----MEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-------DV-LV 660 (861)
Q Consensus 595 ~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-------~~-~~ 660 (861)
.+...|. ..|++++|.+.|+...+......+ ..++..+...|...|++++|++.++++. ..+ .. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6776774 469999999999887643222221 3457778899999999999999998852 111 11 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHHH--cCChhHHHHHHHH
Q 002975 661 WRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA-----HILLSNLYAS--AGHWEYVANIRKR 717 (861)
Q Consensus 661 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~L~~~y~~--~g~~~~a~~~~~~ 717 (861)
+..++-.+...|+.+.|...++++.+++|..+.. ...|...|.. .+++++|.+.++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444555678899999999999999999865433 2344455554 3568888777753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=8.2e-06 Score=81.19 Aligned_cols=211 Identities=9% Similarity=-0.036 Sum_probs=108.9
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 002975 438 RMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIK 517 (861)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 517 (861)
++++|.++|.+ ....|...|++++|++.|.+..+... +.++.
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~---------------~~~~~------------ 73 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQK---------------KAGNE------------ 73 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHH---------------HTTCH------------
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHH---------------HcCCC------------
Confidence 45666665444 46777777888888777777653210 00000
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccC-----CC----chHHHHHHHHHH-hcCChHHHHHHHHHHHHc---
Q 002975 518 SGFESNHCIYNALISMYSRCANVEAAFQVFKEMED-----RN----VISWTSMITGFA-KHGFAARALEIFYKMLAD--- 584 (861)
Q Consensus 518 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~--- 584 (861)
..-..+|..+..+|.+.|++++|.+.++...+ .+ ..++..+...|. ..|++++|++.|++..+.
T Consensus 74 ---~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 74 ---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00123344445555555555555555554331 11 223444444453 346777777776665432
Q ss_pred -CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC
Q 002975 585 -GIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-----EHYACMVDLLGRSGSLTEALEFIRSMP-LSA 656 (861)
Q Consensus 585 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p 656 (861)
+-.+. ..++..+...+...|++++|..+|+.+.....-.+.. ..+..++..+...|+++.|...+++.. ..|
T Consensus 151 ~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11111 2345666667777777777777777765332221111 123344445556677777777777652 222
Q ss_pred ---C---HHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCC
Q 002975 657 ---D---VLVWRTFLGACRVH--GDTELGKHAAEMILEQDP 689 (861)
Q Consensus 657 ---~---~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p 689 (861)
+ ......|+.++... +.++.|+..++++.+++|
T Consensus 231 ~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 1 22344455555442 246667776666666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.8e-06 Score=74.10 Aligned_cols=134 Identities=14% Similarity=0.025 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHh
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLL 636 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 636 (861)
.+......+.+.|++++|+..|++.++. .|....+ ..++. .....+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~-----------~~~~~-~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEA-QKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc-----------chHHH-hhhchhH--------HHHHHHHHHHH
Confidence 4455566778888888888888887763 2211000 00000 0011111 13466677888
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHH
Q 002975 637 GRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVA 712 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~ 712 (861)
.+.|++++|+..+++.. ..| ++..|..++.++...|+++.|+..++++++++|+|+.+...++.++...+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888763 344 68899999999999999999999999999999999999999999988777666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=9.9e-06 Score=73.00 Aligned_cols=110 Identities=5% Similarity=-0.034 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 671 (861)
.+......+...|++++|+..|+.........+.... ........+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh-------HHHHHHHHHHHHHhh
Confidence 4455566777788888888888777643322222100 000000000 124677788889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
|+++.|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.16 E-value=2.8e-06 Score=79.40 Aligned_cols=115 Identities=7% Similarity=-0.171 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002975 588 PNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMP-LSA-DVLVWRTFL 665 (861)
Q Consensus 588 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll 665 (861)
|+...+......+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.++++. ..| ++..|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 334444444455555555555555555544221 1233445555555555555555555555542 344 466777788
Q ss_pred HHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 666 GACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
.++...|+++.|+..++++++++|++...+..+.+.+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 888888888888888888888888766555544444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=5.7e-06 Score=69.50 Aligned_cols=106 Identities=12% Similarity=-0.017 Sum_probs=68.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhcC---CHHHHHHHHHhCC-CCCCH---HHHHHHHHH
Q 002975 596 VLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRSG---SLTEALEFIRSMP-LSADV---LVWRTFLGA 667 (861)
Q Consensus 596 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~g---~~~eA~~~~~~~~-~~p~~---~~~~~ll~~ 667 (861)
+++.+...+++++|.+.|+.... +.| +..++..+..+|.+.+ ++++|+++++++. ..|+. .+|..|+.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 44455555555556655555552 222 3344445555554433 3344666666642 23332 377888999
Q ss_pred HHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 668 CRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
|...|+++.|+..++++++++|++..+..++..+..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998887777665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=1.7e-05 Score=69.90 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 002975 592 TYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRVH 671 (861)
Q Consensus 592 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 671 (861)
.+..-...+.+.|++++|+..|+.........+... -......... ....+|..+..++...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 455556667777777777777776663221111100 0000000000 0134677788889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCCh
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKT 751 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~ 751 (861)
|+++.|+..++++++++|++..+|..++.+|...|+|++|...++...+ ..|..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--------------------------l~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------LNPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTC
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999998766 24666
Q ss_pred HHHHHHHHHHHHHHHh
Q 002975 752 LEIYAELDQLALKIKE 767 (861)
Q Consensus 752 ~~i~~~l~~l~~~~~~ 767 (861)
.++...+..+..++++
T Consensus 135 ~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 135 LDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.3e-06 Score=71.96 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=77.2
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVH---GDTELGKHAAEMILEQDPQD--PAAHILLSNLY 702 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~y 702 (861)
..+++.+...+++++|++.|++.. .+.++.++..+..++... ++.+.|+..++++++.+|.+ ..++..||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999874 355678888899888654 45667999999999998865 45889999999
Q ss_pred HHcCChhHHHHHHHHHHh
Q 002975 703 ASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 703 ~~~g~~~~a~~~~~~m~~ 720 (861)
...|++++|.+.++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999998876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-05 Score=68.75 Aligned_cols=91 Identities=9% Similarity=0.044 Sum_probs=74.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch-------HHHHHH
Q 002975 630 ACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA-------HILLSN 700 (861)
Q Consensus 630 ~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~L~~ 700 (861)
-.+.+.+.+.|++++|++.|++.. .+.+..+|..+..++...|+++.|+..++++++++|+++.. |..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 346677778888888888887763 34468899999999999999999999999999999988764 455777
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002975 701 LYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 701 ~y~~~g~~~~a~~~~~~m~~ 720 (861)
++...+++++|.+.+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88889999999999886644
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=1.5e-05 Score=71.79 Aligned_cols=129 Identities=14% Similarity=0.046 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHh
Q 002975 593 YIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSA-DVLVWRTFLGACRVH 671 (861)
Q Consensus 593 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~ 671 (861)
+......+...|++++|+..|+++.+.. ..........+.. ...| +...|..+..++...
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~~------~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADGA------KLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHHG------GGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHHH------HhChhhHHHHHHHHHHHHhh
Confidence 4445556667777777777776665210 0000111111111 1122 355777888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCCh
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPKT 751 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~ 751 (861)
|+++.|+..++++++++|+++.+|..+|.+|...|++++|.+.++...+. .|..
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------------------~p~n 144 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------APED 144 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTC
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------------------------CCCC
Confidence 99999999999999999999999999999999999999999999988762 3555
Q ss_pred HHHHHHHHHHHHHHH
Q 002975 752 LEIYAELDQLALKIK 766 (861)
Q Consensus 752 ~~i~~~l~~l~~~~~ 766 (861)
.++...+..+..+++
T Consensus 145 ~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 145 KAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666766766665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.7e-06 Score=93.50 Aligned_cols=92 Identities=11% Similarity=-0.085 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 627 EHYACMVDLLGRSGSLTEALEFIRSMPLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 627 ~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
..+..+...+.+.|+.++|...+++.. .++ ..++..|+..++..|+++.|+..++++++++|+++.+|..||.+|...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp ----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 345555566666666666665544331 111 234555666677777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHH
Q 002975 706 GHWEYVANIRKRMK 719 (861)
Q Consensus 706 g~~~~a~~~~~~m~ 719 (861)
|++.+|...+.+..
T Consensus 200 ~~~~~A~~~y~ral 213 (497)
T d1ya0a1 200 GDHLTTIFYYCRSI 213 (497)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766665554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=5e-05 Score=68.05 Aligned_cols=91 Identities=19% Similarity=0.040 Sum_probs=74.8
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 002975 628 HYACMVDLLGRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASA 705 (861)
Q Consensus 628 ~~~~l~~~~~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~ 705 (861)
.|..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|+++.|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45667778888999999999988863 3446788999999999999999999999999999999999999999998887
Q ss_pred CChhH-HHHHHHHH
Q 002975 706 GHWEY-VANIRKRM 718 (861)
Q Consensus 706 g~~~~-a~~~~~~m 718 (861)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 76654 34444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=5.8e-05 Score=67.65 Aligned_cols=131 Identities=8% Similarity=-0.027 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002975 591 ITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSMPLSADVLVWRTFLGACRV 670 (861)
Q Consensus 591 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 670 (861)
..+.-.+..+...|++++|...|+.........+... .++. ...+.+ ...+|..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~~-~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKES-KASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhhh-hhcchh----HHHHHHhHHHHHHH
Confidence 4555666677777777777777776653222211110 0000 000000 13456667788899
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEEeCCCCCCC
Q 002975 671 HGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLIKEAGCSWIEADNKVHKFHVGETSHPK 750 (861)
Q Consensus 671 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~ 750 (861)
.|+++.|+..++++++++|++..+|..++.+|...|++++|.+.++.+.+ .+|.
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--------------------------l~P~ 130 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--------------------------VNPQ 130 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------SCTT
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCC
Confidence 99999999999999999999999999999999999999999999998876 2466
Q ss_pred hHHHHHHHHHHHHHHH
Q 002975 751 TLEIYAELDQLALKIK 766 (861)
Q Consensus 751 ~~~i~~~l~~l~~~~~ 766 (861)
..++...+..+...+.
T Consensus 131 n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 131 NKAARLQIFMCQKKAK 146 (168)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6677777776665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.94 E-value=0.00067 Score=65.68 Aligned_cols=211 Identities=9% Similarity=-0.048 Sum_probs=118.4
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHHhccCC-CchHHHHHHHHHHh----cCCh
Q 002975 501 SIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSR----CANVEAAFQVFKEMEDR-NVISWTSMITGFAK----HGFA 571 (861)
Q Consensus 501 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~ 571 (861)
+.++.++|.+.+++..+.| +...+..|..+|.. ..+...|...+....++ +...+..|...+.. .++.
T Consensus 14 ~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~ 90 (265)
T d1ouva_ 14 KEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNT 90 (265)
T ss_dssp HTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhh
Confidence 3344444444444443333 22333334444443 34555555555544432 33344444333332 3456
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHH
Q 002975 572 ARALEIFYKMLADGIKPNGITYIAVLSACS----HAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLT 643 (861)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~ 643 (861)
+.|...+++..+.|... ....+...+. .......+...+..... ..+...+..|...|.. ..+..
T Consensus 91 ~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~ 163 (265)
T d1ouva_ 91 NKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLK 163 (265)
T ss_dssp HHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccc
Confidence 66777777766655221 1111222221 23345556665554431 1334445555555543 45666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHH
Q 002975 644 EALEFIRSMPLSADVLVWRTFLGACRV----HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIR 715 (861)
Q Consensus 644 eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~ 715 (861)
.+..+++......+...+..|...+.. .+|.+.|+..++++.+.+ ++.++..|+.+|.. ..++++|.+.+
T Consensus 164 ~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~ 241 (265)
T d1ouva_ 164 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENF 241 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred cchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 777777765444466666666666654 468999999999998874 67788999999986 44788999999
Q ss_pred HHHHhCCC
Q 002975 716 KRMKERNL 723 (861)
Q Consensus 716 ~~m~~~~~ 723 (861)
++.-+.|.
T Consensus 242 ~kAa~~g~ 249 (265)
T d1ouva_ 242 KKGCKLGA 249 (265)
T ss_dssp HHHHHHTC
T ss_pred HHHHHCcC
Confidence 98877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0001 Score=66.09 Aligned_cols=129 Identities=10% Similarity=-0.014 Sum_probs=90.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhh
Q 002975 560 SMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGR 638 (861)
Q Consensus 560 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r 638 (861)
.....+...|++++|+..|+++++. .+. ........+.. .+.| ....|..+..++.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGA----------KLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHG----------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHH----------HhChhhHHHHHHHHHHHHh
Confidence 3455667788888888888877651 110 00001111110 1111 23456667788888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 639 SGSLTEALEFIRSM-PLSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 639 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
.|++++|+..++++ ...| ++..|..++.++...|+++.|+..++++++++|+|..++..|..++.......+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999888876 3444 577999999999999999999999999999999999999999888766554444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=0.00011 Score=64.36 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 002975 556 ISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDL 635 (861)
Q Consensus 556 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 635 (861)
..+......+.+.|++.+|+..|++.+.. -|..... .-.........+ ....|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 46677788899999999999999999873 2211000 000000000001 12356678888
Q ss_pred hhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 002975 636 LGRSGSLTEALEFIRSMP-LSA-DVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYA 703 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~ 703 (861)
|.+.|++++|++.++++. ..| ++.+|..++.++...|+++.|+..++++++++|+|+.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999988863 344 67899999999999999999999999999999999988887766544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.0036 Score=61.77 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=71.3
Q ss_pred HHHHHHhcCCChHHHHHHHHhcCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcccHHHHHHHhcCCcchh
Q 002975 118 SLISLYSKCGDLNEANKIFKSMGNKRDIVSWSSMISSYVNRGKQVDAIHMFVEMLELGFCPNEYCFSAVIRACSNTENVA 197 (861)
Q Consensus 118 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 197 (861)
.+.+.|.+.|.++.|..+|..++. |..++..+.+.+++..|.+++.... +..+|..+..+|.......
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ----------CTTTHHHHHHHTTC------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 334444455555555555555555 5555555555555555555544321 2334555555554443332
Q ss_pred hhhhhhhhhhhccCCCCchhHHHHHHHHhhhCCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 002975 198 IGHIIYGFLLKCGYFDSDVCVGCALIDMFVKGSVDLESAYKVFDKMT---EKNTVGWTLMITRCTQLGCPRDAIRLFLDM 274 (861)
Q Consensus 198 ~a~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 274 (861)
.+. +.... ...++.-...++..|-. .|..++...+++... ..+...++-++..|++.+ .++-++.+...
T Consensus 87 la~-----i~~~~-~~~~~d~l~~~v~~ye~-~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~ 158 (336)
T d1b89a_ 87 LAQ-----MCGLH-IVVHADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF 158 (336)
T ss_dssp HHH-----HTTTT-TTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHH-----HHHHH-hhcCHHHHHHHHHHHHH-cCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence 211 11111 12233333456666666 667777776666532 234455666777776653 23333333222
Q ss_pred HHCCCCCCcccHHHHHHHHhccCCchH
Q 002975 275 ILSGFLPDRFTLSGVVSACSELELFTS 301 (861)
Q Consensus 275 ~~~g~~pd~~t~~~ll~a~~~~~~~~~ 301 (861)
.+.+....++..|.+.+.+.+
T Consensus 159 ------s~~y~~~k~~~~c~~~~l~~e 179 (336)
T d1b89a_ 159 ------WSRVNIPKVLRAAEQAHLWAE 179 (336)
T ss_dssp ------STTSCHHHHHHHHHTTTCHHH
T ss_pred ------cccCCHHHHHHHHHHcCChHH
Confidence 122334455566655554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.61 E-value=0.013 Score=55.98 Aligned_cols=220 Identities=10% Similarity=-0.057 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhc----ccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 002975 457 YNTMVDAYAKNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASS----IGAIGKGEQIHARIIKSGFESNHCIYNALIS 532 (861)
Q Consensus 457 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 532 (861)
+..|...+.+.+++++|++.|++..+.| |...+..|...+.. ..+...+...+....+.+ +......|..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3344444445555555555555555443 22333333333332 335555555555555444 2222233333
Q ss_pred HHHc----cCCHHHHHHHHHhccCC-CchHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-
Q 002975 533 MYSR----CANVEAAFQVFKEMEDR-NVISWTSMITGFAK----HGFAARALEIFYKMLADGIKPNGITYIAVLSACSH- 602 (861)
Q Consensus 533 ~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 602 (861)
.+.. ..+.+.|...++...+. .......+...+.. ......|...+.+.... .+...+..+...+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccC
Confidence 3322 34455555555544432 22222222222222 23345555555555442 233444445554443
Q ss_pred ---cCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----h
Q 002975 603 ---AGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR----SGSLTEALEFIRSMPLSADVLVWRTFLGACRV----H 671 (861)
Q Consensus 603 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~ 671 (861)
..+...+..+++... +.| +......+..+|.. ..++++|+.+|++....-++..+..|...+.. .
T Consensus 156 ~~~~~~~~~~~~~~~~a~-~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKAC-DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCcccccccchhhhhccc-ccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCc
Confidence 334555555555544 222 33333344444433 45677777777776433455666666665553 2
Q ss_pred CCHHHHHHHHHHHhccCC
Q 002975 672 GDTELGKHAAEMILEQDP 689 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p 689 (861)
+|.+.|...++++.++.+
T Consensus 232 ~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCSTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHCcC
Confidence 377788888888877765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.60 E-value=0.00017 Score=59.23 Aligned_cols=85 Identities=11% Similarity=-0.040 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHhhhc
Q 002975 562 ITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQ-RMEHYACMVDLLGRS 639 (861)
Q Consensus 562 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~r~ 639 (861)
...+.+.|++++|+..|++.++ ..|+ ..+|..+..++.+.|++++|+..|+...+ +.| +...+..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHC
Confidence 3344445555555555555554 2333 33444455555555555555555554442 122 234444455555555
Q ss_pred CCHHHHHHHHHh
Q 002975 640 GSLTEALEFIRS 651 (861)
Q Consensus 640 g~~~eA~~~~~~ 651 (861)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=2.6e-05 Score=67.88 Aligned_cols=118 Identities=7% Similarity=-0.064 Sum_probs=70.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLT 643 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~ 643 (861)
|-+.+.+++|+..|++.++ +.|+ ...+..+..++...+.+..+.+- .+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDA--------------------------KQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHH--------------------------HHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHH--------------------------HHHHH
Confidence 3455668888888888888 4565 45666666666544333222110 11223
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhH
Q 002975 644 EALEFIRSMP-LSA-DVLVWRTFLGACRVHG-----------DTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEY 710 (861)
Q Consensus 644 eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~ 710 (861)
+|++.++++. ..| +..+|..++.++...| +++.|...++++++++|++...+..|+......+.+.+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444443331 222 3445555555554432 46889999999999999999888888776544333333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=6e-05 Score=65.45 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=61.0
Q ss_pred hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH----------hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 002975 637 GRSGSLTEALEFIRSMP--LSADVLVWRTFLGACRV----------HGDTELGKHAAEMILEQDPQDPAAHILLSNLYAS 704 (861)
Q Consensus 637 ~r~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~ 704 (861)
-|.+.+++|++.+++.. .+.++.+|..+..++.. .+.++.|+..++++++++|+++.+|..++++|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 44555666666666652 23345566666666543 3456889999999999999999999999999998
Q ss_pred cCC-----------hhHHHHHHHHHHh
Q 002975 705 AGH-----------WEYVANIRKRMKE 720 (861)
Q Consensus 705 ~g~-----------~~~a~~~~~~m~~ 720 (861)
.|+ |++|.+.+++..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 765 5777777776655
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00045 Score=58.22 Aligned_cols=58 Identities=10% Similarity=-0.088 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002975 558 WTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMY 617 (861)
Q Consensus 558 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 617 (861)
+..+...|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|+..++.++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 334556666667777777777776663 343 4566666666777777777777666655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.06 Score=52.68 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=83.0
Q ss_pred CChhhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHH
Q 002975 386 PNHFTFASVLKACGNLLDSNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYA 465 (861)
Q Consensus 386 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 465 (861)
||..-...+..-|.+.|.++.|..++..+. -+..++..|.+.++++.|.+++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 454455556666667777777777776432 23456777777788888777776553 4457777777777
Q ss_pred hcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHH
Q 002975 466 KNLNSEKAFELLHEIEDTGVGTSAYTFASLLSGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQ 545 (861)
Q Consensus 466 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 545 (861)
+.....-| .+.......+......++..|...|..+....+++...... ..+..+++-++..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHH
Confidence 76655433 23333444566666777788888888887777777665332 4566677788888887653 33334
Q ss_pred HHHh
Q 002975 546 VFKE 549 (861)
Q Consensus 546 ~~~~ 549 (861)
.+..
T Consensus 154 ~l~~ 157 (336)
T d1b89a_ 154 HLEL 157 (336)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 3433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0009 Score=59.94 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|..+..++...|+++.|+..++++++++|.+...|..|+.+|...|++++|.+.++.++.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999999999988743
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00025 Score=56.04 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 002975 632 MVDLLGRSGSLTEALEFIRSMP--------LSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLY 702 (861)
Q Consensus 632 l~~~~~r~g~~~eA~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y 702 (861)
+...+.+.|++++|.+.|++.. ..++ ..++..|..++...|++++|+..++++++++|+++.++..+..+.
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4444555555555555554431 1222 568889999999999999999999999999999998888775543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.37 E-value=0.00036 Score=61.32 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQD-----------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
...|+.+..++...|+++.|...+++++++.|.. ..+|..++.+|...|++++|.+.+++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999988888888765432 22577899999999999999999987754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00011 Score=78.78 Aligned_cols=112 Identities=8% Similarity=-0.064 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHHhccCCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHH
Q 002975 523 NHCIYNALISMYSRCANVEAAFQVFKEMEDRNV-ISWTSMITGFAKHGFAARALEIFYKMLADGIKPN-GITYIAVLSAC 600 (861)
Q Consensus 523 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 600 (861)
+...+..+...+.+.|+.++|...++....++. .++..+...+...|++++|+..|++..+ +.|+ ..+|+.+...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 344555566666666666666665554443322 3455566666667777777777777666 4554 45666677777
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhh
Q 002975 601 SHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGR 638 (861)
Q Consensus 601 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r 638 (861)
...|+..+|...|.+... --.|-...+..|..++.+
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHH
Confidence 677777777776666652 113444555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0016 Score=58.16 Aligned_cols=121 Identities=10% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHhhcccchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 002975 497 SGASSIGAIGKGEQIHARIIKSGFESNHCIYNALISMYSRCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALE 576 (861)
Q Consensus 497 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 576 (861)
......|++++|.+.+...+... +.... ......+.+...-..+.......+..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 45566777777777777776531 00000 000000001111111112234577888999999999999999
Q ss_pred HHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCChhHH
Q 002975 577 IFYKMLADGIKP-NGITYIAVLSACSHAGLISEGWKHFRSMYD----EHGIVQRMEHY 629 (861)
Q Consensus 577 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 629 (861)
.++++++ ..| +...|..++.++...|+.++|++.|+++.+ +.|+.|...+-
T Consensus 89 ~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 89 ELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999 566 467899999999999999999999998743 57999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0011 Score=52.06 Aligned_cols=61 Identities=15% Similarity=-0.028 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 660 VWRTFLGACRVHGDTELGKHAAEMILEQDPQD-------PAAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 660 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
.+-.++..+...|+++.|+..+++++++.|.+ ..++..|+++|.+.|++++|.+.++++.+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34567888999999999999999999986654 34688999999999999999999998876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.97 E-value=0.00063 Score=65.29 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=75.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHhhhcCCHHH
Q 002975 567 KHGFAARALEIFYKMLADGIKPN-GITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRM-EHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~r~g~~~e 644 (861)
+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|...|+...+ +.|+. ..+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45777777777777777 4554 45677777777777777777777777762 34432 333334444444444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCch
Q 002975 645 ALEFIRSM--PLSAD-VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAA 694 (861)
Q Consensus 645 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 694 (861)
+..-.... ..+|+ ...+...+..+...|+.+.|...++++.++.|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 43322221 12232 2233334556778889999999999999988877655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.87 E-value=0.0029 Score=55.17 Aligned_cols=109 Identities=9% Similarity=-0.037 Sum_probs=69.9
Q ss_pred hHHHHH--HHHHHhcCChHHHHHHHHHHHHcCC-CCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 002975 556 ISWTSM--ITGFAKHGFAARALEIFYKMLADGI-KPN----------GITYIAVLSACSHAGLISEGWKHFRSMYDEHGI 622 (861)
Q Consensus 556 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 622 (861)
.+|..+ ...+.+.|++++|+..|++.++..- .|+ ..+|..+..++...|++++|...++...+-
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~--- 84 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 84 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc---
Confidence 356655 3445567888888888888876311 121 245666777777777777777666655421
Q ss_pred CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Q 002975 623 VQRMEHYACMVDLLGRSGSLTEALEFIRSM-PLSAD-----VLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPA 693 (861)
Q Consensus 623 ~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 693 (861)
..+. ...++ ..++..+..++...|++++|+..+++++++.|+..+
T Consensus 85 --------------------------~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 85 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred --------------------------ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 1110 01111 235677888999999999999999999998775543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.23 E-value=0.0028 Score=60.58 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHHHHHH
Q 002975 536 RCANVEAAFQVFKEMED---RNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNG-ITYIAVLSACSHAGLISEGWK 611 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 611 (861)
+.|++++|+..+++..+ .|...+..+...|+..|++++|+..|++..+ ..|+. ..+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 34555666655555442 2445555666666666666666666666655 34542 233333333333333333322
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 002975 612 HFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEALEFIRSM 652 (861)
Q Consensus 612 ~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA~~~~~~~ 652 (861)
...... ..+-.+....+......+.+.|+.++|.+.++++
T Consensus 86 ~~~~~~-~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 86 GAATAK-VLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp SCCCEE-CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhhhhh-cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 211111 0111112222333344556666666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.93 E-value=0.64 Score=36.64 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=92.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHH
Q 002975 565 FAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTE 644 (861)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~e 644 (861)
+.-.|..++..++..+..... +..-|+-++--....-+-+-..+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 345677788888887777632 22233333333333344444555555554333333 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 002975 645 ALEFIRSMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYVANIRKRMKERNLI 724 (861)
Q Consensus 645 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a~~~~~~m~~~~~~ 724 (861)
....+-.+ .-+..-.+-.+....++|.-+.-+..+..+++-+.-++.....++++|-+.|.-.++.++..+.-++|++
T Consensus 75 vv~C~~~~--n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55554444 2233344556777888999999999999999977778999999999999999999999999999998885
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.071 Score=42.84 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhC---CHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002975 658 VLVWRTFLGACRVHG---DTELGKHAAEMILEQDPQDP-AAHILLSNLYASAGHWEYVANIRKRMKE 720 (861)
Q Consensus 658 ~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~L~~~y~~~g~~~~a~~~~~~m~~ 720 (861)
..+.-.+.++..++. +.+.|+.+++.+++.+|.+. ..+..|+-+|.+.|++++|.+..+.+.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 334444444444332 34556666666666555543 4555666666666666666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.48 E-value=1.3 Score=34.77 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002975 536 RCANVEAAFQVFKEMEDRNVISWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRS 615 (861)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 615 (861)
+|+++......+-.+- .+....+..+....++|+-++-.++++.+.+.+ +|++.....+..||-+.|...++-+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444443332 233445566777888888888888888877644 77777888888899999999988888887
Q ss_pred HHhhcCC
Q 002975 616 MYDEHGI 622 (861)
Q Consensus 616 m~~~~~~ 622 (861)
.- +.|+
T Consensus 146 AC-e~G~ 151 (161)
T d1wy6a1 146 AC-KKGE 151 (161)
T ss_dssp HH-HTTC
T ss_pred HH-HHhH
Confidence 76 3344
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.96 E-value=0.47 Score=38.90 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 002975 672 GDTELGKHAAEMILEQDPQDPAAHILLSNLYAS----AGHWEYVANIRKRMKERNL 723 (861)
Q Consensus 672 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~----~g~~~~a~~~~~~m~~~~~ 723 (861)
.|.+.|...++++.+. .++.+...|+.+|.. ..+.++|.+.+++.-+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 3566666666666654 345566667777765 3466677777776666553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=5.7 Score=40.01 Aligned_cols=349 Identities=8% Similarity=0.005 Sum_probs=181.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHhcccCC
Q 002975 325 VDMYAKCTVDGSVDDSRKVFDRMLDHNVMSWTAIITGYVQSGGRDKEAVKLFSDMIQGQ-VAPNHFTFASVLKACGNLLD 403 (861)
Q Consensus 325 i~~y~~~g~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~ 403 (861)
+..+.+.++ ++.....+...+ .+...-.....+....|+ .++|...+..+-..| ..|+.
T Consensus 79 l~~L~~~~~---w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~-~~~a~~~~~~lW~~~~~~p~~--------------- 138 (450)
T d1qsaa1 79 VNELARRED---WRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQ-SEEAWQGAKELWLTGKSQPNA--------------- 138 (450)
T ss_dssp HHHHHHTTC---HHHHHHHCCSCC-SSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSCSSCCCTH---------------
T ss_pred HHHHHhccC---HHHHHHhccCCC-CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCchH---------------
Confidence 444555555 766555554322 133333455666777787 778887777665443 22222
Q ss_pred hHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHhhc
Q 002975 404 SNVAEQVYTHAVKRGRALDDCVGNSLISMYARSGRMEDARKAFESLFEKNLVSYNTMVDAYAKNLNSEKAFELLHEIEDT 483 (861)
Q Consensus 404 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 483 (861)
...++..+.+.|. .+...+-.-+......|+...|..+...+...........+...... ..+......
T Consensus 139 ---c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~---- 207 (450)
T d1qsaa1 139 ---CDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART---- 207 (450)
T ss_dssp ---HHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH----
T ss_pred ---HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc----
Confidence 2223333333332 22333333455566678888888888877654444444444443322 222222111
Q ss_pred CCCCCHHHHHHHHHHhhc--ccchHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHccCCHHHHHHHHHhccC--CCch
Q 002975 484 GVGTSAYTFASLLSGASS--IGAIGKGEQIHARIIKSGFESNHCIY---NALISMYSRCANVEAAFQVFKEMED--RNVI 556 (861)
Q Consensus 484 g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~~~~--~~~~ 556 (861)
..++......+..+..+ ..+.+.+..++............... ..+...+...+..+.|...+..... .+..
T Consensus 208 -~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~ 286 (450)
T d1qsaa1 208 -TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS 286 (450)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH
T ss_pred -CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH
Confidence 12333333333334333 24566677777666554322211111 1122222344566667666655442 2333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHH-HH
Q 002975 557 SWTSMITGFAKHGFAARALEIFYKMLADGIKPNGITYIAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMV-DL 635 (861)
Q Consensus 557 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-~~ 635 (861)
...-.+......+++..+...++.|-... .-...-..=+..+....|+.++|..+|..... .++ -|.-|. +.
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~ 359 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQR 359 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHHH
Confidence 22334444556788888888888774321 11122233467888888999999988887752 133 344332 12
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC-HHHHH---HHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCChhHH
Q 002975 636 LGRSGSLTEALEFIRSMPLSAD-VLVWR---TFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSNLYASAGHWEYV 711 (861)
Q Consensus 636 ~~r~g~~~eA~~~~~~~~~~p~-~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~y~~~g~~~~a 711 (861)
++..-.+.- ...+..++ ...-+ .-+..+...|....|...+..+.+.. ++.-...++.+..+.|.++.|
T Consensus 360 Lg~~~~~~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~a 432 (450)
T d1qsaa1 360 IGEEYELKI-----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLS 432 (450)
T ss_dssp TTCCCCCCC-----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCCCc-----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHH
Confidence 222111100 00111111 11111 12344678899999999888877543 455677888999999999998
Q ss_pred HHHHHHHH
Q 002975 712 ANIRKRMK 719 (861)
Q Consensus 712 ~~~~~~m~ 719 (861)
.......+
T Consensus 433 I~a~~~~~ 440 (450)
T d1qsaa1 433 VQATIAGK 440 (450)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 87766554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.69 E-value=0.94 Score=36.94 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHhhcC
Q 002975 469 NSEKAFELLHEIEDTG 484 (861)
Q Consensus 469 ~~~~A~~l~~~m~~~g 484 (861)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455555555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=8.4 Score=38.67 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHcC-CCCChH-HH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 002975 569 GFAARALEIFYKMLADG-IKPNGI-TY-IAVLSACSHAGLISEGWKHFRSMYDEHGIVQRMEHYACMVDLLGRSGSLTEA 645 (861)
Q Consensus 569 g~~~~A~~~~~~m~~~g-~~p~~~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~r~g~~~eA 645 (861)
.+.+.|..++....... ..++.. .. ..+.......+..+.+..++...... ..+.....-.+....+.++...+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 45666777666665532 222211 11 11222223345556666666554421 22333333344445566777777
Q ss_pred HHHHHhCCCCCC-HHHH-HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 002975 646 LEFIRSMPLSAD-VLVW-RTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILLSN 700 (861)
Q Consensus 646 ~~~~~~~~~~p~-~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 700 (861)
...++.++..+. ..-| -=+..+....|+.+.|...++.+.. .+ +.|-.|+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LAa 357 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVAA 357 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHHH
Confidence 777777764332 1222 2255667777777777777777654 22 25555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.39 E-value=1.7 Score=34.52 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHH
Q 002975 659 LVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHIL 697 (861)
Q Consensus 659 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 697 (861)
..|-.|.-+|.+.|+++.|...++++++++|+|..+..+
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 466677788999999999999999999999998655443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.11 E-value=4.7 Score=29.94 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=38.2
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 002975 651 SMPLSADVLVWRTFLGACRVHGDTELGKHAAEMILEQDPQDPAAHILL 698 (861)
Q Consensus 651 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 698 (861)
.+..-|++.+..+-+.|||+.+|+..|.+++|-+...--.+...|-.+
T Consensus 34 ~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 34 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345789999999999999999999999999998876543345555543
|