Citrus Sinensis ID: 002994
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | 2.2.26 [Sep-21-2011] | |||||||
| B9HQZ6 | 994 | Probable alanine--tRNA li | yes | no | 0.996 | 0.862 | 0.836 | 0.0 | |
| Q9FFC7 | 978 | Probable alanine--tRNA li | yes | no | 0.996 | 0.876 | 0.783 | 0.0 | |
| C5Z7K4 | 961 | Probable alanine--tRNA li | N/A | no | 0.997 | 0.892 | 0.738 | 0.0 | |
| B8B4H5 | 996 | Probable alanine--tRNA li | N/A | no | 0.996 | 0.860 | 0.742 | 0.0 | |
| B9FSH5 | 932 | Probable alanine--tRNA li | yes | no | 0.996 | 0.919 | 0.740 | 0.0 | |
| Q2JTG8 | 883 | Alanine--tRNA ligase OS=S | yes | no | 0.968 | 0.943 | 0.555 | 0.0 | |
| Q2JLC4 | 884 | Alanine--tRNA ligase OS=S | yes | no | 0.969 | 0.943 | 0.547 | 0.0 | |
| B0JI84 | 874 | Alanine--tRNA ligase OS=M | yes | no | 0.961 | 0.946 | 0.556 | 0.0 | |
| Q8DH56 | 882 | Alanine--tRNA ligase OS=T | yes | no | 0.972 | 0.947 | 0.538 | 0.0 | |
| P74423 | 877 | Alanine--tRNA ligase OS=S | N/A | no | 0.961 | 0.942 | 0.549 | 0.0 |
| >sp|B9HQZ6|SYAP_POPTR Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1488 bits (3853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/860 (83%), Positives = 793/860 (92%), Gaps = 3/860 (0%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
MLQFKPIFLGK PRQVPRA T+Q+CIRTNDVENVGRT+RHHTFFEMLGNFSFGDYFKKEA
Sbjct: 138 MLQFKPIFLGKAPRQVPRATTAQKCIRTNDVENVGRTTRHHTFFEMLGNFSFGDYFKKEA 197
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I+WAWE ST EFGLPA+RLW+SVYEDDDEAFEIW+ EVGVPVE IKRMG +DNFW SGAT
Sbjct: 198 IKWAWELSTKEFGLPADRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGAT 257
Query: 121 GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTG 180
GPCGPCSE+YYDFHP+RG + DLGDD+RFIEFYNLVFMQYNK DDGSLEPLKQKNIDTG
Sbjct: 258 GPCGPCSELYYDFHPERGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTG 317
Query: 181 LGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVY 240
LGLER+ARILQKVPNNYETDLI+PII+KA+ELAN+SYA ++DRT +NLKIIGDHLRAIVY
Sbjct: 318 LGLERLARILQKVPNNYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVY 377
Query: 241 LLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHI 300
L+SDGV PSNIGRGYVVRRLIRRAVRTGRLLG+KG G +G FLP+IAEK IELS HI
Sbjct: 378 LISDGVLPSNIGRGYVVRRLIRRAVRTGRLLGVKGGGE---DGVFLPAIAEKVIELSPHI 434
Query: 301 DSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFL 360
D DVKAR IL+EL+REELRFVQTLERGEKLLDQMLA+AL ++S ++P LSG+D FL
Sbjct: 435 DPDVKARGHSILDELQREELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFL 494
Query: 361 LYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKI 420
LYDTFGFPVEIT EVAEE GV +DM GF++EMENQRRQSQAAHN VKL+V++ DLAE +
Sbjct: 495 LYDTFGFPVEITTEVAEEQGVKIDMDGFEVEMENQRRQSQAAHNVVKLAVENGGDLAENV 554
Query: 421 PDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLY 480
DTEFLGYDTLSA+A+VESLL+NGK VI+VS+GS+VEVLLN+TPFYAESGGQIGD+GFLY
Sbjct: 555 HDTEFLGYDTLSARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYAESGGQIGDHGFLY 614
Query: 481 VTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTA 540
VTQ ++QTAVVE+KDV+KSLGSVFVHKGTIREGVLEVGREVEA VD KLRQRAKVHHTA
Sbjct: 615 VTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQRAKVHHTA 674
Query: 541 THLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLL 600
THLLQ+ALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL D+ELEEIE LINGWIGD LL
Sbjct: 675 THLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIENLINGWIGDGTLL 734
Query: 601 QTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 660
QTKVM+L DAK AGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHV+NT+EIRAFKIISEQ
Sbjct: 735 QTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTSEIRAFKIISEQ 794
Query: 661 GIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEV 720
GIASGIRRIEAVAGEAFIEYINARDS MK LCSTLKVK EEVTTRV+ LLE+LRT RNEV
Sbjct: 795 GIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVDNLLEELRTVRNEV 854
Query: 721 ANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAV 780
+ LRAKAAVYKAS I+SKAF+VGTS IRVLVESMDD DAD+LKSAAEYL+DTLQDPAA+
Sbjct: 855 SALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADALKSAAEYLMDTLQDPAAI 914
Query: 781 VLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 840
+LGSCPDEGKVSL+AAF+ G+VD+GIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL
Sbjct: 915 ILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 974
Query: 841 SIALEKARADLVSVLSEKAS 860
+ ALEKAR DL+ +L+EKA+
Sbjct: 975 TNALEKARTDLILILTEKAN 994
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Populus trichocarpa (taxid: 3694) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q9FFC7|SYAP_ARATH Probable alanine--tRNA ligase, chloroplastic OS=Arabidopsis thaliana GN=EMB86 PE=1 SV=2 | Back alignment and function description |
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| >sp|C5Z7K4|SYAP_SORBI Probable alanine--tRNA ligase, chloroplastic OS=Sorghum bicolor GN=Sb10g008780 PE=3 SV=1 | Back alignment and function description |
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| >sp|B8B4H5|SYAP_ORYSI Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22356 PE=3 SV=1 | Back alignment and function description |
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| >sp|B9FSH5|SYAP_ORYSJ Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0245800 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2JTG8|SYA_SYNJA Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JLC4|SYA_SYNJB Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|B0JI84|SYA_MICAN Alanine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8DH56|SYA_THEEB Alanine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=alaS PE=3 SV=2 | Back alignment and function description |
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| >sp|P74423|SYA_SYNY3 Alanine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=alaS PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | ||||||
| 224105089 | 994 | predicted protein [Populus trichocarpa] | 0.996 | 0.862 | 0.836 | 0.0 | |
| 225428201 | 1006 | PREDICTED: probable alanyl-tRNA syntheta | 1.0 | 0.854 | 0.833 | 0.0 | |
| 449444378 | 956 | PREDICTED: probable alanine--tRNA ligase | 1.0 | 0.899 | 0.796 | 0.0 | |
| 449518200 | 956 | PREDICTED: probable alanine--tRNA ligase | 1.0 | 0.899 | 0.795 | 0.0 | |
| 356516209 | 980 | PREDICTED: probable alanyl-tRNA syntheta | 1.0 | 0.877 | 0.784 | 0.0 | |
| 30688660 | 978 | alanyl-tRNA synthetase [Arabidopsis thal | 0.996 | 0.876 | 0.783 | 0.0 | |
| 10177227 | 954 | alanyl-tRNA synthetase [Arabidopsis thal | 0.996 | 0.898 | 0.783 | 0.0 | |
| 356509509 | 957 | PREDICTED: probable alanyl-tRNA syntheta | 1.0 | 0.898 | 0.781 | 0.0 | |
| 255587004 | 815 | alanyl-tRNA synthetase, putative [Ricinu | 0.947 | 1.0 | 0.823 | 0.0 | |
| 357467609 | 1005 | Alanyl-tRNA synthetase [Medicago truncat | 1.0 | 0.855 | 0.753 | 0.0 |
| >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6.1|SYAP_POPTR RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1488 bits (3853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/860 (83%), Positives = 793/860 (92%), Gaps = 3/860 (0%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
MLQFKPIFLGK PRQVPRA T+Q+CIRTNDVENVGRT+RHHTFFEMLGNFSFGDYFKKEA
Sbjct: 138 MLQFKPIFLGKAPRQVPRATTAQKCIRTNDVENVGRTTRHHTFFEMLGNFSFGDYFKKEA 197
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I+WAWE ST EFGLPA+RLW+SVYEDDDEAFEIW+ EVGVPVE IKRMG +DNFW SGAT
Sbjct: 198 IKWAWELSTKEFGLPADRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGAT 257
Query: 121 GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTG 180
GPCGPCSE+YYDFHP+RG + DLGDD+RFIEFYNLVFMQYNK DDGSLEPLKQKNIDTG
Sbjct: 258 GPCGPCSELYYDFHPERGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTG 317
Query: 181 LGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVY 240
LGLER+ARILQKVPNNYETDLI+PII+KA+ELAN+SYA ++DRT +NLKIIGDHLRAIVY
Sbjct: 318 LGLERLARILQKVPNNYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVY 377
Query: 241 LLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHI 300
L+SDGV PSNIGRGYVVRRLIRRAVRTGRLLG+KG G +G FLP+IAEK IELS HI
Sbjct: 378 LISDGVLPSNIGRGYVVRRLIRRAVRTGRLLGVKGGGE---DGVFLPAIAEKVIELSPHI 434
Query: 301 DSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFL 360
D DVKAR IL+EL+REELRFVQTLERGEKLLDQMLA+AL ++S ++P LSG+D FL
Sbjct: 435 DPDVKARGHSILDELQREELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFL 494
Query: 361 LYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKI 420
LYDTFGFPVEIT EVAEE GV +DM GF++EMENQRRQSQAAHN VKL+V++ DLAE +
Sbjct: 495 LYDTFGFPVEITTEVAEEQGVKIDMDGFEVEMENQRRQSQAAHNVVKLAVENGGDLAENV 554
Query: 421 PDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLY 480
DTEFLGYDTLSA+A+VESLL+NGK VI+VS+GS+VEVLLN+TPFYAESGGQIGD+GFLY
Sbjct: 555 HDTEFLGYDTLSARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYAESGGQIGDHGFLY 614
Query: 481 VTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTA 540
VTQ ++QTAVVE+KDV+KSLGSVFVHKGTIREGVLEVGREVEA VD KLRQRAKVHHTA
Sbjct: 615 VTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQRAKVHHTA 674
Query: 541 THLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLL 600
THLLQ+ALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL D+ELEEIE LINGWIGD LL
Sbjct: 675 THLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIENLINGWIGDGTLL 734
Query: 601 QTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 660
QTKVM+L DAK AGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHV+NT+EIRAFKIISEQ
Sbjct: 735 QTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTSEIRAFKIISEQ 794
Query: 661 GIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEV 720
GIASGIRRIEAVAGEAFIEYINARDS MK LCSTLKVK EEVTTRV+ LLE+LRT RNEV
Sbjct: 795 GIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVDNLLEELRTVRNEV 854
Query: 721 ANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAV 780
+ LRAKAAVYKAS I+SKAF+VGTS IRVLVESMDD DAD+LKSAAEYL+DTLQDPAA+
Sbjct: 855 SALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADALKSAAEYLMDTLQDPAAI 914
Query: 781 VLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 840
+LGSCPDEGKVSL+AAF+ G+VD+GIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL
Sbjct: 915 ILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 974
Query: 841 SIALEKARADLVSVLSEKAS 860
+ ALEKAR DL+ +L+EKA+
Sbjct: 975 TNALEKARTDLILILTEKAN 994
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428201|ref|XP_002278951.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449444378|ref|XP_004139952.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449518200|ref|XP_004166131.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356516209|ref|XP_003526788.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|30688660|ref|NP_680210.2| alanyl-tRNA synthetase [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7.2|SYAP_ARATH RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356509509|ref|XP_003523490.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357467609|ref|XP_003604089.1| Alanyl-tRNA synthetase [Medicago truncatula] gi|355493137|gb|AES74340.1| Alanyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | ||||||
| TAIR|locus:504954871 | 978 | EMB1030 "EMBRYO DEFECTIVE 1030 | 0.996 | 0.876 | 0.766 | 0.0 | |
| TIGR_CMR|CBU_1052 | 865 | CBU_1052 "alanyl-tRNA syntheta | 0.583 | 0.580 | 0.390 | 1.4e-163 | |
| TIGR_CMR|CHY_0538 | 874 | CHY_0538 "alanyl-tRNA syntheta | 0.870 | 0.856 | 0.409 | 3.1e-154 | |
| UNIPROTKB|O07438 | 904 | alaS "Alanine--tRNA ligase" [M | 0.970 | 0.923 | 0.391 | 1.8e-149 | |
| TIGR_CMR|GSU_0148 | 875 | GSU_0148 "alanyl-tRNA syntheta | 0.856 | 0.842 | 0.398 | 1.8e-142 | |
| TIGR_CMR|CJE_0613 | 842 | CJE_0613 "alanyl-tRNA syntheta | 0.312 | 0.319 | 0.501 | 6.2e-129 | |
| TIGR_CMR|ECH_0981 | 887 | ECH_0981 "alanyl-tRNA syntheta | 0.803 | 0.779 | 0.398 | 1.2e-122 | |
| SGD|S000005862 | 983 | ALA1 "Cytoplasmic and mitochon | 0.765 | 0.669 | 0.383 | 2.8e-122 | |
| CGD|CAL0001447 | 969 | ALA1 [Candida albicans (taxid: | 0.761 | 0.675 | 0.395 | 2.9e-118 | |
| UNIPROTKB|Q5A8K2 | 969 | ALA1 "Alanine--tRNA ligase" [C | 0.761 | 0.675 | 0.395 | 2.9e-118 |
| TAIR|locus:504954871 EMB1030 "EMBRYO DEFECTIVE 1030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3383 (1195.9 bits), Expect = 0., P = 0.
Identities = 659/860 (76%), Positives = 736/860 (85%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEA 60
MLQFKPIFLGKVPR+VP A T+QRCIRTND+ENVG+T+RHHTFFEMLGNFSFGDYFKKEA
Sbjct: 118 MLQFKPIFLGKVPREVPCATTAQRCIRTNDLENVGKTARHHTFFEMLGNFSFGDYFKKEA 177
Query: 61 IQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 120
I+WAWE ST+EFGLPANR+W+S+YEDDDEAFEIW EVGV VE IKRMG DNFW SG T
Sbjct: 178 IKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPT 237
Query: 121 GPCGPCSEIYYDFHPDRGCS-DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDT 179
GPCGPCSE+YYDF+P+RG DVDLGDDTRFIEFYNLVFMQYNK +DG LEPLKQKNIDT
Sbjct: 238 GPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDT 297
Query: 180 GLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIV 239
GLGLERIA+ILQKVPNNYETDLI+PII K SELAN+SY +ND+ +LK+I DH+RA+V
Sbjct: 298 GLGLERIAQILQKVPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVV 357
Query: 240 YLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTH 299
YL+SDGV PSNIGRGYVVRRLIRRAVR G+ LGI GD GNL+GAFLP++AEK IELST+
Sbjct: 358 YLISDGVSPSNIGRGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTY 417
Query: 300 IDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAF 359
IDSDVK F +TLERGEKLLDQ L DALS ++ P L G+DAF
Sbjct: 418 IDSDVKLKASRIIEEIRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAF 477
Query: 360 LLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEK 419
LLYDTFGFPVEIT EVAEE GVS+DM GF++EMENQRRQSQAAHN VKL+V+D AD+ +
Sbjct: 478 LLYDTFGFPVEITAEVAEERGVSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDADMTKN 537
Query: 420 IPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFL 479
I DTEFLGYD+LSA+A+V+SLLVNGKPVI+VS+GS+VEVLL+RTPFYAESGGQI D+GFL
Sbjct: 538 IADTEFLGYDSLSARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAESGGQIADHGFL 597
Query: 480 YVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHT 539
YV+ NQ+ AVVEV DV+KSL +FVHKGT+ A VD LRQRAKVHHT
Sbjct: 598 YVSSDGNQEKAVVEVSDVQKSL-KIFVHKGTVKSGALEVGKEVEAAVDADLRQRAKVHHT 656
Query: 540 ATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANL 599
ATHLLQ+ALKKV+GQETSQAGSLVAFDRLRFDFNF+R L D ELEEIE LIN WIGDA
Sbjct: 657 ATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLINRWIGDATR 716
Query: 600 LQTKVMALDDAKRAGAIAMFGEKYGE-QVRVVEVPGVSMELCGGTHVNNTAEIRAFKIIS 658
L+TKV+ L DAKRAGAIAMFGEKY E +VRVVEVPGVSMELCGGTHV NTAEIRAFKIIS
Sbjct: 717 LETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPGVSMELCGGTHVGNTAEIRAFKIIS 776
Query: 659 EQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARN 718
EQGIASGIRRIEAVAGEAFIEYIN+RDS M LCSTLKVK E+VT RVE LLE+LR AR
Sbjct: 777 EQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTNRVENLLEELRAARK 836
Query: 719 EVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPA 778
E ++LR+KAAVYKAS IS+KAFTVGTS IRVLVESMDD DADSLKSAAE+L+ TL+DP
Sbjct: 837 EASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLKSAAEHLISTLEDPV 896
Query: 779 AVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPE 838
AVVLGS P++ KVSL+AAFS G+V LG+QAGKFIGPIAKLCGGGGGG+PNFAQAGGRKPE
Sbjct: 897 AVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGGGGKPNFAQAGGRKPE 956
Query: 839 NLSIALEKARADLVSVLSEK 858
NL ALEKAR DLV+ LSEK
Sbjct: 957 NLPSALEKAREDLVATLSEK 976
|
|
| TIGR_CMR|CBU_1052 CBU_1052 "alanyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CHY_0538 CHY_0538 "alanyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O07438 alaS "Alanine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_0148 GSU_0148 "alanyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CJE_0613 CJE_0613 "alanyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|ECH_0981 ECH_0981 "alanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7VEG5 | SYA_PROMA | 6, ., 1, ., 1, ., 7 | 0.5145 | 0.9686 | 0.9338 | yes | no |
| Q015G2 | SYAP_OSTTA | 6, ., 1, ., 1, ., 7 | 0.5458 | 0.9720 | 0.8846 | yes | no |
| Q46I13 | SYA_PROMT | 6, ., 1, ., 1, ., 7 | 0.5127 | 0.9639 | 0.9356 | yes | no |
| B1WYQ5 | SYA_CYAA5 | 6, ., 1, ., 1, ., 7 | 0.5542 | 0.9639 | 0.9431 | yes | no |
| Q9FFC7 | SYAP_ARATH | 6, ., 1, ., 1, ., 7 | 0.7837 | 0.9965 | 0.8762 | yes | no |
| Q7U3R9 | SYA_SYNPX | 6, ., 1, ., 1, ., 7 | 0.5446 | 0.9395 | 0.9088 | yes | no |
| B1LQ15 | SYA_ECOSM | 6, ., 1, ., 1, ., 7 | 0.4335 | 0.9151 | 0.8984 | yes | no |
| B9HQZ6 | SYAP_POPTR | 6, ., 1, ., 1, ., 7 | 0.8360 | 0.9965 | 0.8621 | yes | no |
| Q7V419 | SYA_PROMM | 6, ., 1, ., 1, ., 7 | 0.5296 | 0.9686 | 0.9338 | yes | no |
| Q3YYG6 | SYA_SHISS | 6, ., 1, ., 1, ., 7 | 0.4335 | 0.9151 | 0.8984 | yes | no |
| Q1R804 | SYA_ECOUT | 6, ., 1, ., 1, ., 7 | 0.4347 | 0.9151 | 0.8984 | yes | no |
| Q7NI36 | SYA_GLOVI | 6, ., 1, ., 1, ., 7 | 0.5251 | 0.9593 | 0.9471 | yes | no |
| Q8YUD4 | SYA_NOSS1 | 6, ., 1, ., 1, ., 7 | 0.5478 | 0.9662 | 0.9443 | yes | no |
| A7ZQC5 | SYA_ECO24 | 6, ., 1, ., 1, ., 7 | 0.4335 | 0.9151 | 0.8984 | yes | no |
| Q10VG8 | SYA_TRIEI | 6, ., 1, ., 1, ., 7 | 0.5578 | 0.9627 | 0.9473 | yes | no |
| A2BTZ9 | SYA_PROM5 | 6, ., 1, ., 1, ., 7 | 0.4859 | 0.9581 | 0.9300 | yes | no |
| B0JI84 | SYA_MICAN | 6, ., 1, ., 1, ., 7 | 0.5565 | 0.9616 | 0.9462 | yes | no |
| A2CDK7 | SYA_PROM3 | 6, ., 1, ., 1, ., 7 | 0.5286 | 0.9639 | 0.9293 | yes | no |
| B1XP68 | SYA_SYNP2 | 6, ., 1, ., 1, ., 7 | 0.5589 | 0.9616 | 0.9429 | yes | no |
| A8G242 | SYA_PROM2 | 6, ., 1, ., 1, ., 7 | 0.4795 | 0.9546 | 0.9266 | yes | no |
| Q3AGN4 | SYA_SYNSC | 6, ., 1, ., 1, ., 7 | 0.5366 | 0.9627 | 0.9313 | yes | no |
| Q31DD9 | SYA_PROM9 | 6, ., 1, ., 1, ., 7 | 0.4854 | 0.9593 | 0.9311 | yes | no |
| C1MR42 | SYAP_MICPC | 6, ., 1, ., 1, ., 7 | 0.5455 | 0.9779 | 0.9354 | N/A | no |
| Q2JTG8 | SYA_SYNJA | 6, ., 1, ., 1, ., 7 | 0.5554 | 0.9686 | 0.9433 | yes | no |
| C5Z7K4 | SYAP_SORBI | 6, ., 1, ., 1, ., 7 | 0.7383 | 0.9976 | 0.8928 | N/A | no |
| Q3AVV3 | SYA_SYNS9 | 6, ., 1, ., 1, ., 7 | 0.5249 | 0.9651 | 0.9325 | yes | no |
| A2BNH2 | SYA_PROMS | 6, ., 1, ., 1, ., 7 | 0.4849 | 0.9674 | 0.9390 | yes | no |
| A5GPF9 | SYA_SYNPW | 6, ., 1, ., 1, ., 7 | 0.5494 | 0.9453 | 0.9124 | yes | no |
| P74423 | SYA_SYNY3 | 6, ., 1, ., 1, ., 7 | 0.5495 | 0.9616 | 0.9429 | N/A | no |
| A8A3H4 | SYA_ECOHS | 6, ., 1, ., 1, ., 7 | 0.4335 | 0.9151 | 0.8984 | yes | no |
| Q5N4B5 | SYA_SYNP6 | 6, ., 1, ., 1, ., 7 | 0.5524 | 0.9604 | 0.9429 | yes | no |
| B0CFX4 | SYA_ACAM1 | 6, ., 1, ., 1, ., 7 | 0.5385 | 0.9616 | 0.9473 | yes | no |
| A1AEN7 | SYA_ECOK1 | 6, ., 1, ., 1, ., 7 | 0.4347 | 0.9151 | 0.8984 | yes | no |
| A2BZG2 | SYA_PROM1 | 6, ., 1, ., 1, ., 7 | 0.5151 | 0.9639 | 0.9356 | yes | no |
| Q7V3N0 | SYA_PROMP | 6, ., 1, ., 1, ., 7 | 0.4825 | 0.9627 | 0.9345 | yes | no |
| Q0I6G6 | SYA_SYNS3 | 6, ., 1, ., 1, ., 7 | 0.5423 | 0.9674 | 0.9316 | yes | no |
| Q2JLC4 | SYA_SYNJB | 6, ., 1, ., 1, ., 7 | 0.5477 | 0.9697 | 0.9434 | yes | no |
| A4J2K4 | SYA_DESRM | 6, ., 1, ., 1, ., 7 | 0.4272 | 0.9534 | 0.9339 | yes | no |
| A9B9E5 | SYA_PROM4 | 6, ., 1, ., 1, ., 7 | 0.5133 | 0.9662 | 0.9337 | yes | no |
| A3PA95 | SYA_PROM0 | 6, ., 1, ., 1, ., 7 | 0.4831 | 0.9593 | 0.9311 | yes | no |
| B8B4H5 | SYAP_ORYSI | 6, ., 1, ., 1, ., 7 | 0.7421 | 0.9965 | 0.8604 | N/A | no |
| Q31PW3 | SYA_SYNE7 | 6, ., 1, ., 1, ., 7 | 0.5536 | 0.9604 | 0.9429 | yes | no |
| Q8DH56 | SYA_THEEB | 6, ., 1, ., 1, ., 7 | 0.5385 | 0.9720 | 0.9478 | yes | no |
| P57933 | SYA_PASMU | 6, ., 1, ., 1, ., 7 | 0.4327 | 0.9406 | 0.9256 | yes | no |
| A5GWM4 | SYA_SYNR3 | 6, ., 1, ., 1, ., 7 | 0.5497 | 0.9581 | 0.9342 | yes | no |
| Q3MGN4 | SYA_ANAVT | 6, ., 1, ., 1, ., 7 | 0.5478 | 0.9662 | 0.9443 | yes | no |
| B9FSH5 | SYAP_ORYSJ | 6, ., 1, ., 1, ., 7 | 0.7409 | 0.9965 | 0.9195 | yes | no |
| B2J876 | SYA_NOSP7 | 6, ., 1, ., 1, ., 7 | 0.5460 | 0.9674 | 0.9454 | yes | no |
| A5D3F4 | SYA_PELTS | 6, ., 1, ., 1, ., 7 | 0.4421 | 0.95 | 0.9315 | yes | no |
| A4S051 | SYAP_OSTLU | 6, ., 1, ., 1, ., 7 | 0.5387 | 0.9744 | 0.9249 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 860 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 1e-135 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 1e-130 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-107 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-103 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 8e-42 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 1e-28 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 2e-17 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 4e-17 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 3e-09 | |
| pfam02272 | 69 | pfam02272, DHHA1, DHHA1 domain | 2e-08 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 1e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1279 bits (3313), Expect = 0.0
Identities = 446/909 (49%), Positives = 588/909 (64%), Gaps = 80/909 (8%)
Query: 1 MLQFKPIFLGKV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFS 51
M QFKPIFLG R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+S
Sbjct: 52 MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 111
Query: 52 FGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHI 105
FGDYFKKEAI WAWE T +GLPA+RL+ + + D+ EA IW + P E +
Sbjct: 112 FGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERV 169
Query: 106 KRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKD 165
G DNFW G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++
Sbjct: 170 LPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREA 229
Query: 166 DGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQ 219
DGSL+PL K++DTG+GLER+A ILQ P+NY+TDL PI E A A+
Sbjct: 230 DGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289
Query: 220 SNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRG 279
+DR ++ +++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL
Sbjct: 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------L 342
Query: 280 NLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 339
E F P++ E +ELS + +VK E+RI E + EEL F +TLE+G + + LA
Sbjct: 343 GAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAA 402
Query: 340 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQS 399
A + P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S
Sbjct: 403 AKANGG-----PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERS 457
Query: 400 QAAHN-----AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVS 451
+AAH A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS
Sbjct: 458 RAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVS 517
Query: 452 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 511
+G +V ++L++T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+
Sbjct: 518 EGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTV 571
Query: 512 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 571
EG + VG V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFD
Sbjct: 572 TEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFD 631
Query: 572 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVRVV 630
F+ +P+ EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + VRVV
Sbjct: 632 FSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVV 691
Query: 631 EVPGV-SMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMK 689
V GV SMELCGGTHV+NTAE AFK++SE+GIA GIRRI AV G A +E INA DS +
Sbjct: 692 SVGGVYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLER 751
Query: 690 HLCSTLKV------------------------KDEEVTTRVEGLLEDLRTARNEVANLRA 725
L S LKV K EE+ RV L ++LR A+ E A LRA
Sbjct: 752 ELDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRA 811
Query: 726 KAAVYKASTISSKAFTVGTSNEIRVLVESMDD-MDADSLKSAAEYLVDTLQDPAAVVLGS 784
K AV KA+ ++SKA + G S VLV +D +DA +LK AAE ++ L DPAAVVL S
Sbjct: 812 KLAVAKATELASKALSAGKS----VLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSS 867
Query: 785 CPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIAL 844
++GKVSL+AA G+V G++AGK++G IAKLCGGGGGG+P FAQ GR E L AL
Sbjct: 868 DEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAAL 927
Query: 845 EKARADLVS 853
EKARA V+
Sbjct: 928 EKARAFAVA 936
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 100.0 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.83 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.78 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.75 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.71 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.65 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.59 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.41 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.33 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 99.13 | |
| PF02272 | 68 | DHHA1: DHHA1 domain; InterPro: IPR003156 This doma | 98.22 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 96.61 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 95.88 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 93.99 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 93.32 | |
| TIGR00644 | 539 | recJ single-stranded-DNA-specific exonuclease RecJ | 92.13 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 83.91 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 82.74 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 81.93 |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-239 Score=2074.33 Aligned_cols=825 Identities=50% Similarity=0.846 Sum_probs=776.6
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceE
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLW 80 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~~l~ 80 (860)
|+||||||+|..+||++|+||||||||+|||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||
T Consensus 47 m~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~ 126 (879)
T COG0013 47 MVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLY 126 (879)
T ss_pred cccchhhhcCCCCCCCCCeeccccccccCchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCC--CCCCceEEEeeeec
Q 002994 81 ISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVF 158 (860)
Q Consensus 81 vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~--~~~~r~lEiwNlVF 158 (860)
||||++|+||+++|++++|+|++||++++.+||||+||+ ||||||||||||+|+.+++..+.. .|++||||||||||
T Consensus 127 vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVF 205 (879)
T COG0013 127 VTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVF 205 (879)
T ss_pred EEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeee
Confidence 999999999999999999999999999999999999999 999999999999999999877744 78999999999999
Q ss_pred cccccc-CCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceeeehhhhhH
Q 002994 159 MQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRA 237 (860)
Q Consensus 159 ~q~~~~-~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~ 237 (860)
|||||+ .+|+|.|||+||||||||||||+|||||+|||||||+|.|||+.+++++|..|..+....+++|||||||+||
T Consensus 206 mQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs 285 (879)
T COG0013 206 MQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRS 285 (879)
T ss_pred hhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHH
Confidence 999999 6999999999999999999999999999999999999999999999999999976552337899999999999
Q ss_pred HHhhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHH
Q 002994 238 IVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR 317 (860)
Q Consensus 238 ~~~~i~dG~~Psn~grgyvlRrilRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~ 317 (860)
++|||+||++|||+|||||||||||||+||+++||++.| ||++||+.+++.|+++||||.++++.|+++|+.
T Consensus 286 ~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~ 357 (879)
T COG0013 286 LAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKEP--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKL 357 (879)
T ss_pred HHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChhcHHHHHHHHHH
Q 002994 318 EELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRR 397 (860)
Q Consensus 318 Ee~~F~~tl~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~~f~~~~~~~~~ 397 (860)
||++|.+||++|+++|+++++ ++++ + ++|||++||+||||||||+|||++||+++|++||+++|+.+|++||+
T Consensus 358 EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~ 430 (879)
T COG0013 358 EEERFAKTLERGLKLLEKELA----KLKK-S--KTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRE 430 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHH
Confidence 999999999999999999998 5544 3 58999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccCch--hHhhhhCCCCcccccccccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCc
Q 002994 398 QSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGD 475 (860)
Q Consensus 398 ~s~~~~~~~~~~~~~~--~~~~~~~~~t~f~gY~~~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D 475 (860)
+||+++ .+....... ..+.+..++|+|+||++++++++|+.++.+++.|+++.+|++++||||+||||||||||++|
T Consensus 431 ~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D 509 (879)
T COG0013 431 RARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGD 509 (879)
T ss_pred Hhhhcc-ccccccchhhhhhhhccCCCceeeecccccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCc
Confidence 999755 221111111 22333367899999999999999999998876688999999999999999999999999999
Q ss_pred eEEEEeCC-CCccccceEEEEeEEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCC
Q 002994 476 YGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQ 554 (860)
Q Consensus 476 ~G~I~~~~-~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~ 554 (860)
+|+|..++ . .+.|.||||.+++.++|.+....|.+++|+.|.++|||+||..+|+||||||||++||++++|.
T Consensus 510 ~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~ 583 (879)
T COG0013 510 TGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGD 583 (879)
T ss_pred eEEEEecCCc------EEEEEEEEEcCCceEEEEEeeccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCc
Confidence 99999874 4 8999999999559999999998889999999999999999999999999999999999999999
Q ss_pred ceeeccccccCCcEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECC
Q 002994 555 ETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPG 634 (860)
Q Consensus 555 ~v~q~Gs~v~~d~~r~Df~~~~~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~~eky~~~VRVV~Igg 634 (860)
|++|+||.++++++||||+|++++|+|+|++||+.||++|++|.||++.+|++++|++.+++++|+++|++.||||+|++
T Consensus 584 hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~ 663 (879)
T COG0013 584 HVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGD 663 (879)
T ss_pred cceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccEEEEeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Q 002994 635 VSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLR 714 (860)
Q Consensus 635 ~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~l~~~v~~l~~e~k 714 (860)
+|.++||||||.|||+||.|||++++++++|+|||+|+||..|++|+++....+++++..|++ +.++..++++|++++|
T Consensus 664 ~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k 742 (879)
T COG0013 664 FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELK 742 (879)
T ss_pred ceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 6666669999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccee--ecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEE
Q 002994 715 TARNEVANLRAKAAVYKASTISSKAFT--VGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVS 792 (860)
Q Consensus 715 ~l~k~~~~l~~~l~~~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~d~~~L~~la~~l~~~~~~~~vv~l~s~~~~~k~~ 792 (860)
+++|++.+|+++++......+...++. + +++++++..+++.+++.|+.+++.++++.++. +++|++ ..++|+.
T Consensus 743 ~lekel~~lk~~~~~~~~~~~~~~~~~~~i---~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~-vivl~~-~~~~Kv~ 817 (879)
T COG0013 743 ELEKELERLKKKLAAAELADLLSNAKAEEI---GGVKVLAKEVDGADMKELREIADDLKKKLGSA-VIVLAS-VADGKVS 817 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccceee---CCEEEEEEEecCCCHHHHHHHHHHHHhhcCCc-EEEEEE-ecCCeEE
Confidence 999999999998888877776666444 7 89999999999999999999999999999884 888887 5666999
Q ss_pred EEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHHHHhh
Q 002994 793 LIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSVL 855 (860)
Q Consensus 793 ~v~~~s~~~~~~~~~a~~l~k~~~~~~gGkGGG~~~~AQGgg~~~~~l~~al~~~~~~l~~~L 855 (860)
++++++++++.+ ++|++|+++++..+||||||||+||||||+++.+++++++.+.+++++.|
T Consensus 818 ~~~~v~~~~~~~-~~a~~lvk~la~~~gG~GGGr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 818 LVVAVSKDLTDK-VKAGELVKELAAIVGGKGGGRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred EEEEechhhhcc-cCHHHHHHHHHHhcCCCCCCchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 999999776655 99999999999999999999999999999999999999999999987653
|
|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 860 | ||||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-102 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-102 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-102 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-102 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 5e-94 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 5e-49 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 6e-38 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 2e-37 | ||
| 1nyq_A | 645 | Structure Of Staphylococcus Aureus Threonyl-Trna Sy | 2e-05 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 2e-05 |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
|
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 745 bits (1925), Expect = 0.0
Identities = 180/720 (25%), Positives = 291/720 (40%), Gaps = 125/720 (17%)
Query: 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD----- 54
+ F+P G P SQ CIR +D+++VGRT RH T FEM+ + +F
Sbjct: 101 IADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEI 160
Query: 55 YFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 114
Y+K E + + E E+GV E I +
Sbjct: 161 YWKNETVAYCTELLN---------------------------ELGVKKEDIVY---KEEP 190
Query: 115 WNSGATGPCGPCSEIYYDF---------HPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKD 165
W G G GPC E + + R+ + N + +
Sbjct: 191 WAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLE 248
Query: 166 DGSLEPLKQKNIDTGLGLERIARILQK--VPNNYETDLIFPIIKKASELANVSYAQSND- 222
+ + E + I+ V N E + + I+ ++S+LA + +
Sbjct: 249 RFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGER 308
Query: 223 -----------------------RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRR 259
+ + DH R I+++L DG+ PSN G GY+ R
Sbjct: 309 LNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARL 368
Query: 260 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREE 319
+IRR++R L + L + E ++ + + + E L+ E+
Sbjct: 369 MIRRSLRLAEELELG---------LDLYDLVEMHKKI---LGFEFDVPLSTVQEILELEK 416
Query: 320 LRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEH 379
R+ T+ +G +L+++++ +L D LYD+ G PVE+ +A E
Sbjct: 417 ERYRTTVSKGTRLVERLVERK----------KKLEKDDLIELYDSHGIPVELAVGIAAEK 466
Query: 380 GVSVDM-KGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 438
G V+M K E+ + +++ L + P TE L YD +
Sbjct: 467 GAEVEMPKDIYAELAKRHSKAEKVQE-------KKITLQNEYPATEKLYYDDPTLLEFEA 519
Query: 439 SLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 498
+V V+LNR+ FY ESGGQ D G+L G EV DV
Sbjct: 520 ----------EVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVL 563
Query: 499 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ 558
+ V +H ++ EVG +V+ ++D +R R HH+ATH+L +L+KV+G Q
Sbjct: 564 E-ADGVVLH--VVKGAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQ 620
Query: 559 AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAM 618
AG+ F + R D R + E++EIE L N I ++ + M +A+R +
Sbjct: 621 AGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRL 680
Query: 619 F--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEA 676
+ G G ++RVV+V G ++ CGGTH +T EI KI+ + I G+ R E AGEA
Sbjct: 681 YQGGVPPGRKIRVVQV-GDDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171 | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Length = 111 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.94 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.92 | |
| 2zvf_A | 171 | Alanyl-tRNA synthetase; C-terminal, oligomerizatio | 99.92 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.87 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.84 | |
| 3g98_A | 111 | Alanyl-tRNA synthetase; alpha and beta fold, amino | 99.71 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 84.15 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 83.04 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-183 Score=1607.49 Aligned_cols=586 Identities=30% Similarity=0.492 Sum_probs=540.7
Q ss_pred CCCCccccc-ccCCCCCCCccccccccCCCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCC
Q 002994 1 MLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGL 74 (860)
Q Consensus 1 M~qfk~~f~-g~~~~~~~r~~~~Q~CiR~nDl~~VG~t~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l 74 (860)
||||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||||++|||
T Consensus 101 m~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl 180 (752)
T 2zze_A 101 IMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXM 180 (752)
T ss_dssp GGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred hhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999997 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEe
Q 002994 75 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFY 154 (860)
Q Consensus 75 ~~~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiw 154 (860)
|++||+. +||||+|| |||||||||||| +||||
T Consensus 181 ~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d-----------------glEiw 212 (752)
T 2zze_A 181 XPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR-----------------GLEVA 212 (752)
T ss_dssp CGGGEEE-----------------------------EECCEEET--TEEECEEEEEET-----------------TEEEE
T ss_pred chhheee-----------------------------ccCcccCC--CCCCCceeEEEC-----------------CEeee
Confidence 9999741 69999999 999999999996 29999
Q ss_pred eeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccC--
Q 002994 155 NLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ-- 219 (860)
Q Consensus 155 NlVF~q~-------------~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~ydtd~f~p~~~~i~~~~~~~y~~-- 219 (860)
||||||| || ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++|+.
T Consensus 213 NlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~ 290 (752)
T 2zze_A 213 TLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEK 290 (752)
T ss_dssp EEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHH
T ss_pred eeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchh
Confidence 9999999 88 69999999999999999999999999999999999 9999999999999999853
Q ss_pred ------------Cccc-c--------------------------ccceeeehhhhhHHHhhhcCCCccCCCCCchHHHHH
Q 002994 220 ------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRL 260 (860)
Q Consensus 220 ------------~~~~-~--------------------------~~~~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRri 260 (860)
+.+. . +.++||||||+||++|||+||++|||+|||||||||
T Consensus 291 ~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRri 370 (752)
T 2zze_A 291 ILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLL 370 (752)
T ss_dssp HHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHH
T ss_pred hhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHH
Confidence 2001 1 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002994 261 IRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADA 340 (860)
Q Consensus 261 lRRa~~~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~ 340 (860)
||||+||+++||++.| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++
T Consensus 371 lRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~-- 439 (752)
T 2zze_A 371 IRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIA-- 439 (752)
T ss_dssp HHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999988 89999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcCCCCCccchHHHHHHhhccCCChhhHHHHHHHcCceeChh-cHHHHHHHHHHHHHHhhcccccccCchhHhhhh
Q 002994 341 LSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEK 419 (860)
Q Consensus 341 ~~~~~~~~~~~~i~g~~~f~LydTyGfP~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 419 (860)
+++++|. +.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++.. .. ..+...+. .
T Consensus 440 --~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~~--~~~~~~~~-~ 512 (752)
T 2zze_A 440 --KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-EE--LVDFELLK-D 512 (752)
T ss_dssp --HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------CCCSSSSS-S
T ss_pred --HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-cc--chhhHHhc-c
Confidence 5544343 579999999999999999999999999999999999 899999999999886521 11 10011122 2
Q ss_pred CCCCccccccc---ccceeEEEEEEeCCeeeeeecCCCeEEEEeccCCccCCCCCCCCceEEEEeCCCCccccceEEEEe
Q 002994 420 IPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKD 496 (860)
Q Consensus 420 ~~~t~f~gY~~---~~~~a~Vl~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~d 496 (860)
.++|+|+||++ ++++|+|+++.. .+||||+|||||||||||+|+|+|..++. .++|.|
T Consensus 513 ~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------~~~V~d 573 (752)
T 2zze_A 513 LPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR------EVXVTN 573 (752)
T ss_dssp SCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE------EEEEEE
T ss_pred CCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE------EEEEEe
Confidence 57899999998 789999999974 36999999999999999999999987654 799999
Q ss_pred EEEeCCCEEEEEEEeeccccCCCCEEEEEeChhhhhHHHHHhhHHHHHHHHHHhHhCCceeeccccccCCcEEEecCCCC
Q 002994 497 VKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHR 576 (860)
Q Consensus 497 v~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTa~HLL~aAl~~~lg~~v~q~Gs~v~~d~~r~Df~~~~ 576 (860)
|++. +|.++|++.. .+.+.+|++|.++|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||+++.
T Consensus 574 v~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~ 651 (752)
T 2zze_A 574 VQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYX 651 (752)
T ss_dssp EEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSS
T ss_pred eeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCC
Confidence 9999 8999999975 5678899999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCcccccccccccccccccccE
Q 002994 577 PLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAF 654 (860)
Q Consensus 577 ~lt~e~l~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~f 654 (860)
++|+++|.+||++||++|++|+||++.+++++||.+.+..++| +++|++.||||+||++|.++||||||+|||+||.|
T Consensus 652 ~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~f 731 (752)
T 2zze_A 652 RISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPI 731 (752)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEE
Confidence 9999999999999999999999999999999999999888887 78899999999999999999999999999999999
Q ss_pred EEEeeecccCCeEEEEEEecH
Q 002994 655 KIISEQGIASGIRRIEAVAGE 675 (860)
Q Consensus 655 kI~~~~~~~~G~~RI~~v~G~ 675 (860)
+|++.+++++|+|||+|+||.
T Consensus 732 KIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 732 XILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp EEEEEEEEETTEEEEEEEECC
T ss_pred EEEEEEEEcCCEEEEEEEeCC
Confidence 999999999999999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 860 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 3e-74 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 4e-48 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 3e-30 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 3e-27 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 6e-19 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 2e-12 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 1e-10 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 240 bits (614), Expect = 3e-74
Identities = 109/201 (54%), Positives = 140/201 (69%), Gaps = 11/201 (5%)
Query: 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYF 56
M+ FK +FLG R RA + Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYF
Sbjct: 43 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYF 102
Query: 57 KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 116
KKEAI++AWEF T LP +L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW
Sbjct: 103 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ 162
Query: 117 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 176
G GPCGP SEIY D + + R++E +NLVFMQYN+ ++G L PL N
Sbjct: 163 MGDVGPCGPSSEIYVDRGEEYEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPN 215
Query: 177 IDTGLGLERIARILQKVPNNY 197
IDTG+GLERIA +LQ +N+
Sbjct: 216 IDTGMGLERIASVLQGKNSNF 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.97 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.96 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.93 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.79 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.67 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 90.97 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 84.34 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.5e-90 Score=709.20 Aligned_cols=190 Identities=58% Similarity=1.084 Sum_probs=186.0
Q ss_pred CCCCcccccccCCCCCCCccccccccCC----CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCC
Q 002994 1 MLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 76 (860)
Q Consensus 1 M~qfk~~f~g~~~~~~~r~~~~Q~CiR~----nDl~~VG~t~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~ 76 (860)
||||||||+|.++||++|+|++|||||+ |||||||+|+|||||||||||||||||||+|||.|||||||++|||||
T Consensus 43 M~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~ 122 (236)
T d1riqa2 43 MVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122 (236)
T ss_dssp TGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCG
T ss_pred chhhhhhhcCccccCCCccccccccccccCccchhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeee
Q 002994 77 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNL 156 (860)
Q Consensus 77 ~~l~vt~~~~D~e~~~iw~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNl 156 (860)
+|||||||++|+||+++|.+.+|+|++||++++.+||||+||++||||||||||||+|+.++ +++|||||||+
T Consensus 123 ~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~~-------~~~r~lEIwNl 195 (236)
T d1riqa2 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNL 195 (236)
T ss_dssp GGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEE
T ss_pred cceEEEeecCcHHHHHHHHhhcCcccccceecCCCCCccccCCCCCCCcceeEEEccccccC-------CCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999987753 46899999999
Q ss_pred ecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCc
Q 002994 157 VFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNY 197 (860)
Q Consensus 157 VF~q~~~~~~g~~~~L~~~~iDtG~GlER~~~ilq~~~s~y 197 (860)
|||||+|+++|++.|||+|+||||||||||||||||++|||
T Consensus 196 VFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~s~y 236 (236)
T d1riqa2 196 VFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 236 (236)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGG
T ss_pred eheeeeecCCCccccCCCCcccCCccHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|