Citrus Sinensis ID: 003016
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 857 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJW6 | 798 | Pentatricopeptide repeat- | yes | no | 0.764 | 0.820 | 0.593 | 0.0 | |
| Q9SA76 | 1006 | Pentatricopeptide repeat- | no | no | 0.515 | 0.439 | 0.352 | 3e-90 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.424 | 0.444 | 0.229 | 4e-24 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.469 | 0.672 | 0.218 | 3e-18 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.424 | 0.604 | 0.198 | 2e-17 | |
| Q8S9D1 | 831 | Pentatricopeptide repeat- | no | no | 0.383 | 0.395 | 0.232 | 4e-17 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.429 | 0.447 | 0.231 | 6e-17 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.329 | 0.455 | 0.242 | 6e-17 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.346 | 0.393 | 0.215 | 4e-16 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.392 | 0.533 | 0.206 | 5e-16 |
| >sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/698 (59%), Positives = 525/698 (75%), Gaps = 43/698 (6%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMES-------------YRR----------CLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
LAME +R+ KVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 570
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 571 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 630
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 631 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
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Involved in the regulation of early chloroplast development and chloroplast gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 277/502 (55%), Gaps = 60/502 (11%)
Query: 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVY 217
I L L+ ++ W+F + + + + +T+ +++L+ LG G+WR+ + V++W+
Sbjct: 437 IEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWRRVLQVIEWLQ 496
Query: 218 GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277
+ K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY S+AVTLGQ
Sbjct: 497 RQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQA 556
Query: 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337
G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV QW+G FWV
Sbjct: 557 GHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVL 616
Query: 338 KQLRKSGLKPSAATYGLAMESYRRC----------------------LLKVLVRAFWEEG 375
+QL++ G KPS TYGL ME C +VLV W+EG
Sbjct: 617 QQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQKSSIPNALAYRVLVNTLWKEG 676
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM--------LVVEKIKSLRH 427
K +EAV V +ME RG+VG+A++YY+LA CLC+ GR + + +V++ I++L +
Sbjct: 677 KSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMVNFVNPVVLKLIENLIY 736
Query: 428 -------------------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468
+KPL +T+TGLI + +D G+I + IF MK C PN+ T
Sbjct: 737 KADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLVT 796
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTR-----ANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
N MLK Y + +F +A+ELF++ + NSS + + + PD YT+++ML+
Sbjct: 797 CNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFE------SRVLPDTYTFNTMLDT 850
Query: 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
A +W+ F Y Y+ M G + +H +++EASRAGK ++E ++ + + IP
Sbjct: 851 CAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIPP 910
Query: 584 PLFFTEMLIQAIVQSNYEKAVA 605
E + + + ++ A++
Sbjct: 911 SPLIKERFFRKLEKGDHISAIS 932
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 169/419 (40%), Gaps = 55/419 (13%)
Query: 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248
T ++L LKGLG + A+ DW KD + + V ++++LGK GR A
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308
+FN + ED D+ +Y S+ G +E V + ++M + K
Sbjct: 194 NMFNGLQED-GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCK------------ 240
Query: 309 VLEPDLVVYNAVLNACVP-SHQWKGVFWVFKQLRKSGLKPSAATYGLAME---------- 357
P L+ YN +LN W + + ++++ G+ P A TY +
Sbjct: 241 ---PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 358 -------------SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 404
SY + L+ + + + EA+ + M G + Y L
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 405 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCE 463
+G +AM + ++ + +KP T+T L+ G ++ +SIF+ M++ C+
Sbjct: 358 AYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
PNI T NA +K+Y F++ ++F+E N G L PD T++++L
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEI---NVCG----------LSPDIVTWNTLLAV 463
Query: 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
V+K M +G ++ L+ SR G + +L+AG P
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/490 (21%), Positives = 191/490 (38%), Gaps = 88/490 (17%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++G G R+A +L+ + G D+ Y +++ KAG + AL + + M
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDV---ITYNVMISGYCKAGEINNALSVLDRM- 198
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
++ PD+ Y+++ +L G LK+ +++++RM Q+ PD++
Sbjct: 199 ---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCY---------------PDVI 240
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y ++ A + ++R G P TY VLV +EG
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY------------NVLVNGICKEG 288
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKSLRHSKPLEIT 434
+++EA+ + +M G + + +C+ GRW DA L+ + ++ + P +T
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR--KGFSPSVVT 346
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
F LI G + I I + M H C+PN + N +L + + +A E E
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE--- 403
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE-------------------YFE 534
R S G PD TY++ML A + E +
Sbjct: 404 RMVSRG----------CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 535 YVYKGMALSG----------------CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578
V G+A +G + D ++ L+ SR GK F
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 579 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES-NEDRISRDK 637
G P+ + F +++ ++A+ + M E +T L E + ++++
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 638 LEKLLNALCN 647
LE LLN LCN
Sbjct: 574 LE-LLNELCN 582
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/409 (19%), Positives = 164/409 (40%), Gaps = 45/409 (11%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD ++++ L G + E V L++RM + +PD+V YN+++
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC---------------QPDVVTYNSIV 200
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381
N S + +++ + +K TY ++S R +G I+ A+
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR------------DGCIDAAI 248
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441
+ + ME +G+ + Y L LC G+W D L+++ + S R P ITF L+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDV 307
Query: 442 SMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 500
+ G + + +++ M PNI T N ++ Y + S+A + + R S
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS-- 365
Query: 501 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560
PD T++S+++ + + V++ ++ G + ++ L+
Sbjct: 366 -----------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER 620
++GK L E F ++ G +P + + +L EKA+ + + + +
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 621 QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCR 669
+T + E K+E N C+ + V + + LC+
Sbjct: 475 MYTTIIEG---MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 71/400 (17%)
Query: 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKEL 283
D++SR TKL+ L + GRP EA IFN ++E+ + P + Y ++ L + L
Sbjct: 318 DVRSR---TKLMNGLIERGRPQEAHSIFNTLIEEGH-KPSLITYTTLVTALTRQKHFHSL 373
Query: 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343
+ LI ++ + L+PD +++NA++NA S +F+++++S
Sbjct: 374 LSLISKVEKNG---------------LKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418
Query: 344 GLKPSAATYGLAMESY--------------------------RRCLLKVLVRAFWEEGKI 377
G KP+A+T+ ++ Y R C +LV+A+ + KI
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTC--NILVQAWCNQRKI 476
Query: 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS--KPLEITF 435
EA V M+ GV + LA G A ++ I + H+ KP T
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTC 534
Query: 436 TGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVY-SRNDM--FSKAKELFEE 491
++ + G +++ + F MK+ PN+ N+++K + + NDM + +L EE
Sbjct: 535 GTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
+KPD T+S+++ A ++ + E +Y M G D
Sbjct: 595 FG----------------VKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ L +RAG+ E + + + G P+ + +T+++
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQII 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 186/432 (43%), Gaps = 64/432 (14%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
VLV+ + E+ +T + F + +S L+ T+ ++ L+KGL D G W +A+ + +W+
Sbjct: 110 VLVNSIVEQPLTGLSRFFDSV--KSELLRTD--LVSLVKGLDDSGHWERAVFLFEWLVLS 165
Query: 220 KDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQV 277
+ LK V + ILG+ + A ++ + + L++ L D+ AY ++ +
Sbjct: 166 SNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--DVRAYTTILHAYSRT 223
Query: 278 GLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFW 335
G ++ + L ERM++ PS P LV YN +L+ W+ +
Sbjct: 224 GKYEKAIDLFERMKEMGPS----------------PTLVTYNVILDVFGKMGRSWRKILG 267
Query: 336 VFKQLRKSGLK----------PSAATYGLAMES------YRRC-------LLKVLVRAFW 372
V ++R GLK + A GL E+ + C L++ F
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432
+ G EA++ ++ ME+ + Y EL G ++A V+E + + P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK-KGVMPNA 386
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
IT+T +I + G D+ + +F MK+ C PN T NA+L + + S++ E+ +
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKK---SRSNEMIKM 443
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
S+G + P+ T+++ML ++ V++ M G + D+
Sbjct: 444 LCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 552 HAWLLVEASRAG 563
L+ R G
Sbjct: 494 FNTLISAYGRCG 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GL + G W +L + G + + ++ L+ + K G+ EA ++N M+
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIG---RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ PD Y+S+ + L E ++ + M K EPD+V
Sbjct: 343 TR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---------------EPDIV 386
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y+ ++N+ + + +F+++ GL P+ TY LV F + G
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY------------NTLVLGFCQSG 434
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
K+N A + M RGV + Y L LC+NG A+ + EK++ R + L I
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT--LGIGI 492
Query: 436 TGLIISSM-DGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
+II M + +DD S+F + D +P++ T N M+ + S+A LF +
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK-- 550
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
+ DG PD++TY+ ++ A
Sbjct: 551 ---------MKEDGC--TPDDFTYNILIRA 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 51/348 (14%)
Query: 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299
K GR +AL M +PD ++++ L + G +K +++++ M Q+
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE------ 324
Query: 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359
+DP D+ YN+V++ + K V Q+ P+ TY
Sbjct: 325 -----GYDP----DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY------- 368
Query: 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419
L+ +E ++ EA R + +G++ + L LC + AM +
Sbjct: 369 -----NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 420 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSR 478
E+++S + +P E T+ LI S G +D+ +++ + M+ C ++ T N ++ + +
Sbjct: 424 EEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 479 NDMFSKAKELFEE-----TTRANSSGYTFLSG--------DGAPL---------KPDEYT 516
+ +A+E+F+E +R + + T + G D A L KPD+YT
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542
Query: 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
Y+S+L + + + M +GC+ D + L+ +AG+
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 150/368 (40%), Gaps = 32/368 (8%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDLV Y V+N F + ++ + L+P Y ++
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY------------NTIIDG 265
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ +++A+ + ME +G+ Y L CLCN GRW DA ++ + R P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 489
TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK++F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
E S + F PD TY+++++ + E V++ M+ G +
Sbjct: 385 EFMV----SKHCF---------PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 431
Query: 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINA 609
+ L+ +AG C + + F ++ G P+ + + +L EKA+ +
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 610 MAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCR 669
+ + T + + E K+E + CN + + V + + CR
Sbjct: 492 LQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 670 --SEKERD 675
S++E D
Sbjct: 549 KGSKEEAD 556
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 857 | ||||||
| 255568609 | 1010 | GTP binding protein, putative [Ricinus c | 0.915 | 0.777 | 0.546 | 0.0 | |
| 356565493 | 865 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.929 | 0.541 | 0.0 | |
| 449448456 | 860 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.931 | 0.513 | 0.0 | |
| 357476491 | 877 | Pentatricopeptide repeat-containing prot | 0.936 | 0.915 | 0.518 | 0.0 | |
| 334188692 | 798 | delayed greening 1 protein [Arabidopsis | 0.764 | 0.820 | 0.593 | 0.0 | |
| 297797625 | 621 | EMB1408 [Arabidopsis lyrata subsp. lyrat | 0.645 | 0.890 | 0.598 | 0.0 | |
| 224097262 | 504 | predicted protein [Populus trichocarpa] | 0.556 | 0.946 | 0.655 | 0.0 | |
| 357121315 | 858 | PREDICTED: pentatricopeptide repeat-cont | 0.768 | 0.768 | 0.472 | 0.0 | |
| 242040507 | 872 | hypothetical protein SORBIDRAFT_01g03160 | 0.905 | 0.889 | 0.432 | 1e-180 | |
| 326511679 | 844 | predicted protein [Hordeum vulgare subsp | 0.756 | 0.767 | 0.471 | 1e-178 |
| >gi|255568609|ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis] gi|223535436|gb|EEF37106.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/858 (54%), Positives = 592/858 (68%), Gaps = 73/858 (8%)
Query: 27 EIQKHNRKQAKIQSQAQLSPSQQQALAEEQHFQTLKREFKMFRRAVAAKSGDP----LVG 82
+IQKHNRK K+ SQAQL+ SQ+QALAEE HFQTL E++ F +A+ ++ LVG
Sbjct: 177 QIQKHNRKITKV-SQAQLTASQKQALAEESHFQTLTSEYRTFTKAIKGETRSSTSGLLVG 235
Query: 83 KPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQL--GSDYFA 140
+PWERIER+K R++ S S +F G+ L E+LRELKE FE LNWVLD+D++L D+ +
Sbjct: 236 RPWERIERVKLREIVSGSNQFNGNKLNVESLRELKENFEDGLNWVLDNDIELENNDDWLS 295
Query: 141 KNVEWH--PEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK 198
+W P KR R++ E IR LVDRLS+R++T ++WK +IM QSGL F+EGQ++K+++
Sbjct: 296 SENQWQYDPAKRRRNDKEEIRFLVDRLSKRDVTVRDWKLAKIMKQSGLRFSEGQLMKIVE 355
Query: 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDC 258
GLG+KG W QAM+V++WVY K++RD KSRFVYTKLL++L RP EALRIFN M ED
Sbjct: 356 GLGNKGKWEQAMAVVEWVYNDKERRDSKSRFVYTKLLSVLRIERRPKEALRIFNSMREDH 415
Query: 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318
NLYPD+AAYH +AVTLGQ G LKEL+K++E M+Q+PSKRI M K WDPVLEPD+V+YN
Sbjct: 416 NLYPDMAAYHVIAVTLGQAGNLKELLKIVECMKQQPSKRINKMCYKRWDPVLEPDIVIYN 475
Query: 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES-------------YRR---- 361
AVLNACVP+ QWKGV WVF+QLRKSGLKP+ ATYGLAME +R+
Sbjct: 476 AVLNACVPTQQWKGVAWVFEQLRKSGLKPNGATYGLAMEVMLNSGKYDLVHELFRKMNRS 535
Query: 362 ------CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415
KVLVRAFWEEGK+NEA+ AVR+ME RGVVGTAS+YYELACCLC G WQDA
Sbjct: 536 GEAPKALTYKVLVRAFWEEGKVNEAMEAVRDMENRGVVGTASLYYELACCLCYYGMWQDA 595
Query: 416 MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475
ML V+K+K+LRHSKPLE+TFTGLI+SS+DGGH+ DCISIF++MK +C PNIGT+N MLKV
Sbjct: 596 MLEVKKMKNLRHSKPLEVTFTGLIMSSLDGGHVSDCISIFEYMKAYCVPNIGTINIMLKV 655
Query: 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEY 535
Y RND+FSKAKELF E N+ DG L PDE+TYSSMLEASA+A QWEYFE
Sbjct: 656 YGRNDLFSKAKELFGEIKGTNN--------DGTYLVPDEFTYSSMLEASASALQWEYFEL 707
Query: 536 VYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 595
VYK M G QLDQ KHA LLVEASR GK HLLEHAFD+ LEAGEIPH L FTEM+ QA
Sbjct: 708 VYKEMTFCGYQLDQKKHASLLVEASRVGKYHLLEHAFDAALEAGEIPHHLLFTEMVFQAT 767
Query: 596 VQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEI 655
Q NYE+AV L+N +A APF I+E+QW +LF+ N D+I++D LEKLL+AL + + A SE
Sbjct: 768 AQQNYERAVVLVNTLALAPFKISEKQWIDLFQKNGDKITQDGLEKLLDALRSSDVA-SEP 826
Query: 656 TVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMM 715
TV+NLSR LH+LC + LS S G DV + + S S +M
Sbjct: 827 TVANLSRTLHSLCGRGRSEYLSGSTSLG---------------IDVTNSSYLDSGSRKIM 871
Query: 716 FENA-DLGADPLPQKTDVAVDIDSINHSSLSRQADADT-EMFSKALSYIHSNDRPSNLCI 773
+ ++ D L KTD+A S+ S+ + DT E S +Y D +++C
Sbjct: 872 GDKGPEMHEDTLIDKTDIAYGDLSVTRSNTGGEGSDDTDEASSSPRNYSTDRDGIASICT 931
Query: 774 DMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVDLQKSMNRVGGSRRSELPSASEI 833
+++ DD AS +D L D D ++ +N+V S ++LPSA EI
Sbjct: 932 NVKIFGDDEASGASTDCL--------------DFDEMEYGIPINQVDDSCGTKLPSADEI 977
Query: 834 LEAWKESREKDGIFFPFE 851
L+ WKESR K +FFPF+
Sbjct: 978 LDIWKESR-KGRLFFPFQ 994
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565493|ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/873 (54%), Positives = 596/873 (68%), Gaps = 69/873 (7%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSPSQQQALAEEQHFQTL 61
+KI+++L++ GV PTPKI+ ++RKKEIQKHNRK K Q L+ +Q QA AEEQH +T+
Sbjct: 21 DKIRRRLIEKGVQPTPKIVHTLRKKEIQKHNRK-LKAQPAPPLTQAQAQAAAEEQHLETI 79
Query: 62 KREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLA--SESKEFAGDNLKRENLRELKEM 119
KREF RR +A GKPWE I++++F + A E G+ L+RE+L ELKEM
Sbjct: 80 KREF---RRVMA--------GKPWEGIQKVEFLEKARRPERDCGGGEKLRRESLTELKEM 128
Query: 120 FE----KDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAKNW 175
FE +L WV D D+++ +F + + + RSE E IR LV RLS++E+T K+W
Sbjct: 129 FEARKMDELKWVFDADLEIDEVWFDEGYGARGKTQKRSEVEVIRFLVHRLSDKEITMKDW 188
Query: 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235
KF R+M SGL FTEGQ+L++++ LG K W+QA+SV+ WVY KD R +SRFVYTKLL
Sbjct: 189 KFSRMMKMSGLPFTEGQLLRIVELLGFKRCWKQALSVVQWVYNYKDHRKFQSRFVYTKLL 248
Query: 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS 295
++LGKAGRP+EAL+IFN+M E ++YPDIAAYHSVAVTLGQ GLLKEL+ ++E MRQKP
Sbjct: 249 SVLGKAGRPNEALQIFNMMRESIHIYPDIAAYHSVAVTLGQAGLLKELLNIVECMRQKPK 308
Query: 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
MHRKNWDPVLEPD+V+YNAVLNACVPS QWKGV WVFKQLRKSGLKP+ ATYGLA
Sbjct: 309 AF---MHRKNWDPVLEPDVVIYNAVLNACVPSKQWKGVSWVFKQLRKSGLKPNGATYGLA 365
Query: 356 MESY-----------------------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392
ME + KVLV+ FW+EGK+NEAV AVR+ME+RGV
Sbjct: 366 MEVMLESGNYDLVHEFFGKMKRSGEVPKALTYKVLVKTFWKEGKVNEAVKAVRDMERRGV 425
Query: 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 452
+GTASVYYELACCLCNNGRWQDA+L V+ I+SL H+KPLE+TFTG+I SSMDGGHI+DCI
Sbjct: 426 IGTASVYYELACCLCNNGRWQDAILEVDNIRSLPHAKPLEVTFTGMIKSSMDGGHINDCI 485
Query: 453 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512
IF++MK+HC PNIG +N MLKVY +NDMFSKAK LFEE A S Y G + + P
Sbjct: 486 CIFEYMKEHCVPNIGAINTMLKVYGQNDMFSKAKVLFEEVKVAKSEFYATPEGGYSSVVP 545
Query: 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572
D Y+Y+SMLEASATA QWEYFE+VY+ M +SG QLDQ KH LLV+ASRAGK HLLEHAF
Sbjct: 546 DVYSYNSMLEASATAQQWEYFEHVYREMIVSGYQLDQDKHLSLLVKASRAGKLHLLEHAF 605
Query: 573 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR 632
D +LEAGEIPH LFF E++IQAI Q NYE+AV LIN MAYAPF +TE+QWT LF+ +EDR
Sbjct: 606 DMILEAGEIPHHLFFFELVIQAIAQHNYERAVILINTMAYAPFRVTEKQWTNLFKESEDR 665
Query: 633 ISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPL 692
IS + LE+LL+AL NC+ SE+TVSNL+R+LH LC R+ SS FGS+ + +
Sbjct: 666 ISLENLERLLDALGNCDIV-SELTVSNLTRSLHVLCGLGTSRNFSSIIPFGSE----NSV 720
Query: 693 HGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLSRQADADT 752
+G++E D + NVP S MM E + D L + + + ++ ++D
Sbjct: 721 NGLNEGID--DDGNVPKISRRMMIEGVESKNDILVASYHTEPETIAFSRDQVNGGDNSDV 778
Query: 753 EMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVDL 812
+F SYI +L D D+ A + SD LD+EL S+ V+D
Sbjct: 779 MVFRPQNSYIEDG---KSLYADSLECTDNLALDKSSDELDEELWDDGSSEDDDGEGVID- 834
Query: 813 QKSMNRVGGSRRSELPSASEILEAWKESREKDG 845
PSA EILE WKE RE+DG
Sbjct: 835 --------------KPSAYEILEVWKEMREEDG 853
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448456|ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Cucumis sativus] gi|449499902|ref|XP_004160949.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/883 (51%), Positives = 612/883 (69%), Gaps = 82/883 (9%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKI--QSQAQ---LSPSQQQALAEEQ 56
+KIK+ LL+ GV+PTP+I+RS+RKKEIQK+NRK ++ + AQ LS SQ+Q +AEE
Sbjct: 20 DKIKRMLLQKGVYPTPRIVRSLRKKEIQKYNRKLKRVAERQSAQSPPLSESQKQLIAEET 79
Query: 57 HFQTLKREFKMFRRAVAAK-SGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRE 115
HF TL+ E+K F +A+ AK +G +VG+PWER+ER+ F++L + D+LK+E+LRE
Sbjct: 80 HFLTLRSEYKEFSKAIEAKPAGGLMVGRPWERLERVNFKELTGVRTGYNRDSLKKESLRE 139
Query: 116 LKEMFE----KDLNWVLDDDVQLGSDYF-AKNVEWHPEKRWRSEAEAIRVLVDRLSEREM 170
L+++FE ++ W LDDDV+L ++ ++N + KR R + E IR LVDRLS +
Sbjct: 140 LRKLFETRKLEESQWALDDDVELKEEWLESENDRYDVVKRRRGDGEVIRFLVDRLSSGPI 199
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
+ ++WKF R+M +SGL F EGQ+LK+L LG KG W+QA+SV++WVY LK KSRFV
Sbjct: 200 SMRDWKFSRMMIRSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHSKSRFV 259
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YTKLLA+LG A +P EAL+IFNLM D +YPD+AAYHS+AVTLGQ GLLK+L+K+IE M
Sbjct: 260 YTKLLAVLGMARKPQEALQIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKVIEFM 319
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
RQ+PSK+++N RK+WDP +EPDLV+YNA+LNAC+P+ +WKGV+WVF QLRKSGL+P+ A
Sbjct: 320 RQQPSKKVRNKCRKSWDPAVEPDLVIYNAILNACIPTLEWKGVYWVFTQLRKSGLRPNGA 379
Query: 351 TYGLAME-----------------------SYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387
TYGL+ME + + +VLV+AFWEEG +N A+ AVR+M
Sbjct: 380 TYGLSMEVMLKSGKYEQLHNLFTKMKKNGQTLKANTYRVLVKAFWEEGNVNGAIEAVRDM 439
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 447
EQRGVVG+ASVYYELACCLC NG+WQDA++ VEK+K+L H KPL +TFTG+I SS +GGH
Sbjct: 440 EQRGVVGSASVYYELACCLCYNGKWQDALVEVEKMKTLSHMKPLVVTFTGMISSSFNGGH 499
Query: 448 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507
IDDCISIF++MK C PNIGT+N MLKVY RNDM+SKAK+LFEE R S S D
Sbjct: 500 IDDCISIFEYMKQICAPNIGTINTMLKVYGRNDMYSKAKDLFEEIKRKADSS----SHDS 555
Query: 508 A--PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
A L PDEYTY+SMLEA+A++ QWEYFE VY+ MALSG QLDQ+KHA LLVEAS+AGK
Sbjct: 556 AVPSLVPDEYTYASMLEAAASSLQWEYFESVYREMALSGYQLDQSKHALLLVEASKAGKW 615
Query: 566 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625
+LL+HAFD++LEAG+IPHPL FTEM++Q Q NYE+AV L+ M YAPF ++ERQWTEL
Sbjct: 616 YLLDHAFDTILEAGQIPHPLLFTEMILQLTTQDNYEQAVTLVRTMGYAPFQVSERQWTEL 675
Query: 626 FESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQ 685
FE N DRI R+ L++LL+AL +C+A SE TVSNLSR+L +LC+ + + S S
Sbjct: 676 FEGNTDRIRRNNLKQLLHALGDCDA--SEATVSNLSRSLQSLCKFDIPENTSQSV----- 728
Query: 686 AIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLS 745
A D H + + ++EN+ EN L D D ++DI ++H+SL+
Sbjct: 729 ACD----HDATDELQLPDSENM---------ENMKLHPD-----EDESLDIIPVDHASLN 770
Query: 746 RQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805
+ +++++M P ++ I L + + SD + + L +S+
Sbjct: 771 MKVNSESKM------------SPWSVSISDGAL----GTGQFSDGSNNVHSPFDLCGESE 814
Query: 806 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESREKDGIFF 848
D D +L ++ + S LP+ +EILE WKE R+ DG+F
Sbjct: 815 D-DEEELNTLLDEFDDAYDSNLPAVNEILETWKEERKADGLFL 856
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476491|ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509586|gb|AES90728.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/882 (51%), Positives = 587/882 (66%), Gaps = 79/882 (8%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSP----SQQQALAEEQH 57
+KI++ L++ GV PTPKI+ ++RKK+IQKHNRK + Q QL+P SQ+Q L EEQH
Sbjct: 25 DKIRRSLIQKGVTPTPKIIHTLRKKQIQKHNRK---LNRQNQLNPPLSKSQKQTLEEEQH 81
Query: 58 FQTLKREFKMFRRAV----AAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENL 113
FQ LK E+K F + + G L+GKPWE +E++ F + + E G+ LKRE+L
Sbjct: 82 FQELKHEYKQFTQNLEENQGGNKGLCLIGKPWEGVEKVDFLERIKVNYEHRGEKLKRESL 141
Query: 114 RELKEMFEK----DLNWVLDDDVQLGSDYFAKNVEWHPEKRW-RSEAEAIRVLVDRLSER 168
ELKEMF + +L WV +DD+++ +F +N +K RSE + +R LVDRL ++
Sbjct: 142 IELKEMFRERKMDELKWVFEDDIEINEVWFDENNNGKRKKTSKRSEVQVVRFLVDRLCDK 201
Query: 169 EMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR 228
E+ AK+WKF R+M SGL FTEGQ++ +++ LG K W+QA+SV+ WVY KD R +SR
Sbjct: 202 EIRAKDWKFSRLMKLSGLSFTEGQLMMIIEMLGVKRCWKQALSVVQWVYNSKDHRKFQSR 261
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
FVYTKLLA+LGKA RP EAL+IFN+ML + +YPD+AAYHS+AVTLGQ GLLKEL+ ++E
Sbjct: 262 FVYTKLLAVLGKARRPKEALQIFNMMLGNIRVYPDMAAYHSIAVTLGQAGLLKELLNIVE 321
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
MRQKP + +K M+RKNWDP LEPD+V+YNAVLNACVPS QWKGV WVF+Q+RKS LKP+
Sbjct: 322 CMRQKP-ETLKYMYRKNWDPTLEPDVVIYNAVLNACVPSKQWKGVSWVFQQMRKSSLKPN 380
Query: 349 AATYGLAMESYRRC-----------------------LLKVLVRAFWEEGKINEAVAAVR 385
ATYGLAME + KV+VR FW+EGK++EAV AVR
Sbjct: 381 GATYGLAMEVMLQSGNYDLVHELFEKMQRNGEVPEALTYKVMVRTFWKEGKVDEAVKAVR 440
Query: 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445
+ME+RGV+GTASVYYELACCLCN GRWQDA L VEKIK L H+KPLE+TFTG+I SSMDG
Sbjct: 441 DMERRGVMGTASVYYELACCLCNCGRWQDATLEVEKIKRLPHAKPLEVTFTGMIRSSMDG 500
Query: 446 GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505
GHIDDCI IF++M+DHC PN+GTVN MLKVYS+NDMFS AK LFEE A S
Sbjct: 501 GHIDDCICIFEYMQDHCAPNVGTVNTMLKVYSQNDMFSTAKVLFEEVKVAKSD------- 553
Query: 506 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
L+PD YTY+ MLEAS+ HQWEYFE+VYK M LSG LDQ KH LLV+ASRAGK
Sbjct: 554 ----LRPDAYTYNLMLEASSRGHQWEYFEHVYKEMILSGYHLDQNKHLPLLVKASRAGKL 609
Query: 566 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625
HLLEHAFD +LEAGEIPH LFF E++IQAI Q NYE+A+ L++ MA+AP+ +TE+QWTEL
Sbjct: 610 HLLEHAFDMVLEAGEIPHHLFFFELVIQAIAQHNYERAIILLSTMAHAPYRVTEKQWTEL 669
Query: 626 FESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQ 685
F+ NEDRI+ + L++LL+ L NCN SE T+SNLSR+LH LC R++SS F S+
Sbjct: 670 FKENEDRINHENLKRLLDDLGNCNVV-SEATISNLSRSLHDLCGLGSSRNISSIIPFRSE 728
Query: 686 AIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLS 745
+D ++E + E P+ S MM E A+ G D L D+ + N +
Sbjct: 729 NVDC-----LNETINGGENGKAPNFSGRMMIEGAESGNDILFGGDQAEPDMFTFNDDQVD 783
Query: 746 RQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805
R + D + I S+ C+D ++LD+ L L K S
Sbjct: 784 RVNNNDVVVCRPQNRVIEDK---SSFCVD------------RPEFLDR----LTLDKSSD 824
Query: 806 DNDVVDLQKSMNRVGGSRRSEL---PSASEILEAWKESREKD 844
D++ E+ PSA +ILEAWKE RE+D
Sbjct: 825 DSEDELSDDESYEDDDDGDKEVIDKPSAYQILEAWKEMREED 866
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188692|ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thaliana] gi|223635752|sp|Q9FJW6.2|PP451_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g67570, chloroplastic; AltName: Full=Protein DELAYED GREENING 1; AltName: Full=Protein EMBRYO DEFECTIVE 1408; Flags: Precursor gi|332010978|gb|AED98361.1| delayed greening 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/698 (59%), Positives = 525/698 (75%), Gaps = 43/698 (6%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMES-------------YRR----------CLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
LAME +R+ KVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 570
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 571 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 630
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 631 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797625|ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata] gi|297312532|gb|EFH42956.1| EMB1408 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/595 (59%), Positives = 452/595 (75%), Gaps = 42/595 (7%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ KSG +VG PWE IER+K ++L S +E +G LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKSGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSGGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVL+DDV + + + + E+ P KRWR+E EA+RVLVDRLS RE+T K
Sbjct: 143 KELKKILEKDLRWVLEDDVDV--EEYDLDKEFDPAKRWRTEGEAVRVLVDRLSGREITEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVRIMNQSGL F+E QMLK++ LG K SW+QA +V+ WVY K ++ +SRFVYTK
Sbjct: 201 HWKFVRIMNQSGLQFSEDQMLKIVDRLGRKNSWKQASAVVHWVYSDKKRKHNRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IF+ ML D LYPD+AAYHS+AVTLGQ GLLKEL+K+IE MRQK
Sbjct: 261 LLSVLGFARRPKEALQIFSEMLGDRQLYPDMAAYHSIAVTLGQAGLLKELLKVIEHMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K +KN+ ++NWD VLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLMKNLRQRNWDHVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAME------SYRRC-----------------LLKVLVRAFWEEGKINEAVAAVRNMEQR 390
LAME Y R KVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKYDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
GV+GT SVYYELACCLCNNGRW+DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWRDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510
C++IFQ+MKD C+PNIGT N ML+VY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLRVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
P+EYTY+ MLEASA + QWEYFE+VY+ M LSG Q+DQ KHA +L+EASRAGK
Sbjct: 551 VPNEYTYNFMLEASARSLQWEYFEHVYQLMILSGYQMDQAKHASMLIEASRAGKV 605
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097262|ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|222853797|gb|EEE91344.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/511 (65%), Positives = 395/511 (77%), Gaps = 34/511 (6%)
Query: 80 LVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYF 139
LVGKPWERIER+K +++ S S+EF G LKRENLR+LKE+FE +L WV DDD+ + +
Sbjct: 1 LVGKPWERIERVKLKEIGSGSREFNGGKLKRENLRQLKEVFEGNLKWVFDDDIDVEDSDW 60
Query: 140 AKNV---EWHPEKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKL 196
++ +W P KRWR E EAIR LVDRLS RE++ K+WK +IM QSGL F+EGQ+LK+
Sbjct: 61 LRSGSEEKWDPAKRWRGEGEAIRFLVDRLSCREVSVKDWKLAKIMKQSGLRFSEGQLLKI 120
Query: 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256
++ LG+KG W QAM+V++WVY K++RD KSRFVYTKLL++LGK R EAL IFNLM E
Sbjct: 121 VEELGNKGKWSQAMAVVEWVYNDKERRDCKSRFVYTKLLSVLGKERRAQEALSIFNLMRE 180
Query: 257 DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316
D +YPD+AAYHS+AVTLGQ GLLKELVK+IE MRQKPSKRI M KNWDPVLEPDLV+
Sbjct: 181 DRRIYPDMAAYHSIAVTLGQTGLLKELVKVIECMRQKPSKRINKMLNKNWDPVLEPDLVI 240
Query: 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM-------------------- 356
YNA+LNACVPS QWKGV WVF+QLR+SGLKP+ ATYGLAM
Sbjct: 241 YNAILNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAMEVMLLSGKYKSVHEYFRKMK 300
Query: 357 ---ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413
ES + KVLVRAFWEEG++NEAV AVR+MEQRGVVG ASVYYELACCLC NGRWQ
Sbjct: 301 KSGESLKALTYKVLVRAFWEEGRVNEAVEAVRDMEQRGVVGAASVYYELACCLCYNGRWQ 360
Query: 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473
DAML VEK+K LR+ KPLE++ TG+I SSMDGGHID+CISIF+HMK HC PNIGT+N ML
Sbjct: 361 DAMLEVEKMKRLRYKKPLEVSLTGMIASSMDGGHIDNCISIFEHMKAHCVPNIGTINTML 420
Query: 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533
KVYSR+D+FS+AKELFE+ + SG T + PD YTYSSMLE SA A QWEYF
Sbjct: 421 KVYSRSDLFSEAKELFEDIKGVDHSGTTII--------PDGYTYSSMLEVSARALQWEYF 472
Query: 534 EYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
EYVYK M+ SG QLDQ KHA LLVEASR+GK
Sbjct: 473 EYVYKEMSFSGYQLDQIKHAPLLVEASRSGK 503
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357121315|ref|XP_003562366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/715 (47%), Positives = 458/715 (64%), Gaps = 56/715 (7%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAKIQSQAQLSPSQQQALA--EEQHFQ 59
E ++++LL+ GV PTPKIL ++RKKE K R+ K S A P+ + +L EE F+
Sbjct: 34 ETLRRRLLRKGVSPTPKILHTLRKKEAHKSLRRARKDTSTANAPPTTEDSLVAQEEARFR 93
Query: 60 TLKREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEM 119
E+++ L+G+PW+ AS + E L L+EM
Sbjct: 94 AAAEEYRV------------LMGRPWDG---------ASSASGPPRGTTGNEGLGGLREM 132
Query: 120 FEK----DLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEA----EAIRVLVDRLSEREMT 171
E + W+L+DDV+ G A + W SE I +LV RLSE +++
Sbjct: 133 LEARRSDGVRWLLEDDVEKGEADDANRKQRRVGSGWISEVGDEERRIELLVSRLSEGDLS 192
Query: 172 AKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231
+W+ R+M Q+ L++ E +L++LK L +G+WRQA++V +WVY + +SRFVY
Sbjct: 193 LGDWRLSRMMKQADLIYNEDNLLQILKRLETQGNWRQAVAVTEWVYNENTYKHRRSRFVY 252
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
TKLL+ILGK+ P EALR+F +ML D +YPD+AAYHS+AVTLG+ GLL EL+K+I+ MR
Sbjct: 253 TKLLSILGKSLVPTEALRVFKIMLGDAQIYPDMAAYHSIAVTLGRAGLLNELIKIIDYMR 312
Query: 292 QKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
QKPSKR+ M RK+WDP+LEPDL++YN+VLNACV S QWKGVFWVFK++R GL P+ AT
Sbjct: 313 QKPSKRVMRMRRKDWDPLLEPDLIIYNSVLNACVLSQQWKGVFWVFKKMRFGGLTPTGAT 372
Query: 352 YGLAMESY-----------------------RRCLLKVLVRAFWEEGKINEAVAAVRNME 388
+GLAME R KVLVRAFWE+GK+NEAV AV +ME
Sbjct: 373 FGLAMEVMLKAKKYDFVQKFFEKMQRKGVPPRAITYKVLVRAFWEQGKVNEAVEAVEDME 432
Query: 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 448
QRG+VG ASVYYELACCLCN G+W++AML VEK++ LR +KPLE FTG+I++S DGG++
Sbjct: 433 QRGIVGAASVYYELACCLCNKGKWKEAMLQVEKLEQLRLTKPLEYVFTGMILASFDGGYM 492
Query: 449 DDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508
+CISIF+ MKD+C PNIGT+N MLKVY R+DMF KAK+LFE TT + SS ++ D +
Sbjct: 493 SECISIFESMKDYCAPNIGTINVMLKVYGRSDMFVKAKDLFETTTCSFSSSQPYIC-DHS 551
Query: 509 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 568
L+ D YTYSSMLEASA A QWEYFE Y+ M LS LDQ+K++WLL++ASRAGK +LL
Sbjct: 552 TLQADAYTYSSMLEASAHAQQWEYFENAYRRMILSHHHLDQSKYSWLLIKASRAGKPYLL 611
Query: 569 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 628
EHA +S+L+ GE P FTE + Q I S+Y + + L+N M+ A + E QW++L +
Sbjct: 612 EHALNSILDRGETPDVQLFTENVCQTIAHSDYGRTLCLLNFMSAASVDVNELQWSDLLQQ 671
Query: 629 NEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFG 683
N R S + L+ LL L + + +S RAL + + E+D S A G
Sbjct: 672 NMFRFSVNALKDLLMHLSTGDTIERDPALS-FVRALQSQYATFVEKDTSFLADCG 725
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242040507|ref|XP_002467648.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor] gi|241921502|gb|EER94646.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 376/870 (43%), Positives = 515/870 (59%), Gaps = 94/870 (10%)
Query: 12 GVFPTPKILRSIRKKEIQKHNRKQAK-----IQSQAQLSPSQQQALAEEQHFQTLKREFK 66
GV PTPK+L +IRKKE K R+ K + A L+P ++ AE++
Sbjct: 50 GVSPTPKVLHTIRKKEALKALRRARKDTAAAAAAAASLNPCGEEIGAEDEEEAR------ 103
Query: 67 MFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDL-N 125
AA LVG+PW+ R + + + + E LRE+ D+
Sbjct: 104 ---FRAAAAEYRALVGRPWDAGARG-----VAPPRGWDAEEGGLEGLREMLVARRGDVFR 155
Query: 126 WVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEA----IRVLVDRLSEREMTAKNWKFVRIM 181
W+LDDD++ +D + + P W +AE I++LV RL+ ++ ++W+ R+M
Sbjct: 156 WLLDDDIE--ADAAERKQQKRPGTGWDVDAEEEERRIQLLVSRLNGDYLSFRDWRLTRMM 213
Query: 182 NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241
++ ++++E +L++L GL +G+WRQA++V++WVY R KSRFVYTKLL++LGK+
Sbjct: 214 KKADIIYSEDNLLRILDGLEARGNWRQALAVIEWVYNENSYRHRKSRFVYTKLLSVLGKS 273
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
R +EALR+F +M D +YPD+ AYHS+AVTLG+ GLLKEL+K+IE MRQKPSKR+ NM
Sbjct: 274 LRANEALRVFTIMRRDPQIYPDMPAYHSIAVTLGRAGLLKELIKIIEYMRQKPSKRVMNM 333
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY-- 359
RK WDP LEPD++VYN+VLNACV S QWKGVFWVF+Q+R SGL P+ AT+GLAME
Sbjct: 334 RRKGWDPSLEPDVLVYNSVLNACVLSQQWKGVFWVFQQMRISGLPPTGATFGLAMEVMLK 393
Query: 360 ---------------------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398
R KVLVRAFWE+GKINEAV AV +MEQRGVVG ASV
Sbjct: 394 AKKYDFVQKFYEKMQKNGVPPRAITYKVLVRAFWEQGKINEAVEAVNDMEQRGVVGAASV 453
Query: 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 458
YYELACCLCNN RW+DAML VEK+K L +KPLE TFTG+I++S +GG+I DCISIF+ M
Sbjct: 454 YYELACCLCNNRRWRDAMLQVEKLKQLPLTKPLEYTFTGMILASFNGGYIYDCISIFESM 513
Query: 459 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518
KDHC PNIGTVN MLKVY R DMF KAK+LFE T S+ T++ + + LK D YTYS
Sbjct: 514 KDHCTPNIGTVNVMLKVYGRCDMFGKAKDLFETTKACFSNSQTYIH-EHSSLKADTYTYS 572
Query: 519 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578
SMLEASA+A QWEYFEYVY+ M LS LDQ+K++WLL++A RAGK +LLEHA DS+LE
Sbjct: 573 SMLEASASAQQWEYFEYVYREMVLSHHCLDQSKYSWLLIKACRAGKSNLLEHALDSILER 632
Query: 579 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKL 638
GEIP TE++ Q+I +Y + + L+N M A + E +W L + N + + D L
Sbjct: 633 GEIPDVQLITELICQSIAHRDYRRTLQLLNIMTEASIKMKEVEWVYLLQKNVYQFNIDAL 692
Query: 639 EKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDISPLHGIHEA 698
E + L +++ + L RAL + C I+ + G +
Sbjct: 693 EGFIKYLSTSGTINADPAL-GLVRALESQC-------------------GITLVKGPYLL 732
Query: 699 FDVKETENVPSSSASMMFENADLGADPLPQKTDVAVDIDSINHSSLSRQADADTEMFSKA 758
D T+ S + E+ D A K D + +++ + D+D E+
Sbjct: 733 TDDTTTQQCGLS----LLESEDKYASSSLAKQD-QLTCENLCTDIILDVPDSDREIPQFG 787
Query: 759 LSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQDNDVVD-LQKSMN 817
+S + S D + + + L D EHSD L +Q +D + SMN
Sbjct: 788 VSVVMSRD----ISLSGQRLED---KHEHSD----------LGQQRPQVSAIDEVLDSMN 830
Query: 818 RVGGSRRSELPSASEILEAWKESREKDGIF 847
G + E+PSASEILE W++ R +G+F
Sbjct: 831 PYGVNSYEEMPSASEILELWEQER-INGMF 859
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326511679|dbj|BAJ91984.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528463|dbj|BAJ93413.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 334/708 (47%), Positives = 456/708 (64%), Gaps = 60/708 (8%)
Query: 2 EKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQLSPSQQQALA--EEQHF 58
E ++++LL+ GV TPKIL ++RKKE K R+ K + +P ++ AL EE F
Sbjct: 38 ETLRRRLLRKGVSATPKILHALRKKEAGKSLRRARKEAATATATAPPKEDALVAEEEARF 97
Query: 59 QTLKREFKMFRRAVAAKSGDPLVGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKE 118
+ E+++ L+G+PW R + + +G++ L L++
Sbjct: 98 RAAAEEYRV------------LMGRPWH-----GARGVVGPPRAASGED----GLVGLRK 136
Query: 119 MFEKD----LNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEA----EAIRVLVDRLSEREM 170
M E+ W+LD DV+ A+ + W SE I +LV RL+E ++
Sbjct: 137 MLEERSGDRFQWLLDGDVENEGVEDARGKQRRVGSGWISEVGDEERRIELLVSRLNEVDL 196
Query: 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230
++ +W+ R+M Q+ L++ E +L++LKGL KG+WRQA++V +WVY + +SRFV
Sbjct: 197 SSGDWRLTRMMKQADLIYNEDNLLQILKGLEAKGNWRQAVAVTEWVYNENSYKHRRSRFV 256
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YTKLL+ILGKA P EALRIF +M D +YPD+AAYHS+AVTLG+ GLL EL+K+I+ M
Sbjct: 257 YTKLLSILGKAWMPTEALRIFTIMRGDAQIYPDMAAYHSIAVTLGRAGLLNELIKIIDYM 316
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
RQKPSKR+ M RK+WDP+LEPD++VYN+VLNACV S QWKGVFWVF+++R GL P+ A
Sbjct: 317 RQKPSKRVMMMRRKDWDPLLEPDVLVYNSVLNACVLSQQWKGVFWVFQKMRFGGLTPTGA 376
Query: 351 TYGLAMESY-----------------------RRCLLKVLVRAFWEEGKINEAVAAVRNM 387
T+GLAME R KVLVRAFWE+GK+NEAV AV++M
Sbjct: 377 TFGLAMEVMLKSKKYEFVQKFFEKMQRKGVPPRAITYKVLVRAFWEQGKVNEAVEAVKDM 436
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 447
EQRGVVG A+VYYELACCLCN GRW+DAML VEK++ R +KPLE FTG+I++S DGG+
Sbjct: 437 EQRGVVGAATVYYELACCLCNKGRWKDAMLQVEKMEQFRLTKPLEFAFTGMILASFDGGY 496
Query: 448 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507
I +CISIF+ MKD+C PNIGT+N MLKVY R DMF KAK+LFE TT S + G
Sbjct: 497 ISECISIFESMKDYCTPNIGTINVMLKVYGRCDMFGKAKDLFETTT---CSSQPHIRGHS 553
Query: 508 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 567
+ LK D YTYSS+LEASA+A QWEYFE VY+ M LS LDQ+K++WLL++ASRAGK +L
Sbjct: 554 S-LKVDVYTYSSILEASASAQQWEYFENVYRKMTLSQHHLDQSKYSWLLIKASRAGKPYL 612
Query: 568 LEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 627
+EHA DS+LE GEIP FTE + Q I +S+Y + + L+N M+ A ++ E+QW++L
Sbjct: 613 VEHALDSILERGEIPDVELFTENICQTIAESDYGRTLHLMNTMSAASVNMNEQQWSDLLL 672
Query: 628 SNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERD 675
N R L+ L+ L +A ++ S RAL + C + +D
Sbjct: 673 QNSHRFRVHGLKDLITHLSTSDAIKTDPGHS-FVRALQSQCATMLAKD 719
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 857 | ||||||
| TAIR|locus:2204629 | 1006 | EMB2279 "EMBRYO DEFECTIVE 2279 | 0.375 | 0.320 | 0.332 | 3.7e-64 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.401 | 0.420 | 0.228 | 4.1e-15 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.390 | 0.531 | 0.216 | 1.8e-13 | |
| TAIR|locus:504956171 | 650 | ABO5 "ABA Overly-Sensitive 5" | 0.408 | 0.538 | 0.199 | 9.9e-11 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.312 | 0.426 | 0.217 | 1.5e-10 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.394 | 0.641 | 0.198 | 4e-10 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.504 | 0.525 | 0.205 | 4.9e-10 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.296 | 0.403 | 0.215 | 6.9e-10 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.452 | 0.519 | 0.213 | 7.1e-10 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.385 | 0.602 | 0.215 | 7.1e-10 |
| TAIR|locus:2204629 EMB2279 "EMBRYO DEFECTIVE 2279" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 112/337 (33%), Positives = 168/337 (49%)
Query: 89 ERLKFRQLASESKEFAGDNLK-RENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHP 147
E + +LA+E E L + + + D + ++ SD + V+
Sbjct: 368 EERRIERLANERHEIRSSKLSGTRRIGAKRNDDDDDSLFAMETPAFRFSDESSDIVDKPA 427
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMXXXXXXXXXXXSWR 207
R E + I L L+ ++ W+F + + + + +T+ + +WR
Sbjct: 428 TSRVEME-DRIEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWR 486
Query: 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267
+ + V++W+ + K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY
Sbjct: 487 RVLQVIEWLQRQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAY 546
Query: 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
S+AVTLGQ G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV
Sbjct: 547 RSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQR 606
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387
QW+G FWV +QL++ G KPS TYGL ME C LV F+ R M
Sbjct: 607 KQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFF------------RKM 654
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424
Q+ + A Y L L G+ +A+ VE ++S
Sbjct: 655 -QKSSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMES 690
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 91/399 (22%), Positives = 160/399 (40%)
Query: 209 AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268
A+ DW KD + + V ++++LGK GR A +FN + ED D+ +Y
Sbjct: 154 ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQED-GFSLDVYSYT 212
Query: 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-S 327
S+ G +E V + ++M + K P L+ YN +LN
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCK---------------PTLITYNVILNVFGKMG 257
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYG----------LAME-------------SYRRCLL 364
W + + ++++ G+ P A TY L E SY +
Sbjct: 258 TPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTY 317
Query: 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424
L+ + + + EA+ + M G + Y L +G +AM + ++
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE 377
Query: 425 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFS 483
+ +KP T+T L+ G ++ +SIF+ M++ C+PNI T NA +K+Y F+
Sbjct: 378 -KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFT 436
Query: 484 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 543
+ ++F+E N G L PD T++++L V+K M +
Sbjct: 437 EMMKIFDEI---NVCG----------LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
G ++ L+ SR G + +L+AG P
Sbjct: 484 GFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 80/369 (21%), Positives = 153/369 (41%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDLV Y V+N F + ++ + L+P Y ++ C K
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL--CKYK----- 270
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHSK 429
+++A+ + ME +G+ Y L CLCN GRW DA L+ + I+ R
Sbjct: 271 -----HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE--RKIN 323
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488
P TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 489 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548
FE S + F PD TY+++++ + E V++ M+ G +
Sbjct: 384 FEFMV----SKHCF---------PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Query: 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608
+ L+ +AG C + + F ++ G P+ + + +L EKA+ +
Sbjct: 431 TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 490
Query: 609 AMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668
+ + T + + E K+E + CN + + V + + C
Sbjct: 491 YLQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 669 R--SEKERD 675
R S++E D
Sbjct: 548 RKGSKEEAD 556
|
|
| TAIR|locus:504956171 ABO5 "ABA Overly-Sensitive 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 76/381 (19%), Positives = 169/381 (44%)
Query: 219 LKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG 278
+K + + + YT ++ +G+ G+ EA+ +FN M+ + L ++ Y+++ L +
Sbjct: 261 MKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTLMQVLAKGK 319
Query: 279 LLKELVKLIERMRQ---KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF- 334
++ + +++ RM + +P++ ++ V E LV + V+ + +G++
Sbjct: 320 MVDKAIQVFSRMVETGCRPNEYTYSLLLNLL--VAEGQLVRLDGVVEIS-KRYMTQGIYS 376
Query: 335 WVFKQLRKSGLKPSAATYGLAMESY----RRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
++ + L K G A M S+ R ++ + GK EA+ + + ++
Sbjct: 377 YLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEK 436
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT-GLIISSMDG-GHI 448
GVV +Y + L G+ + + + + ++ P FT ++I+S G +
Sbjct: 437 GVVTDTMMYNTVFSAL---GKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEV 493
Query: 449 DDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507
D+ I+IF+ + + C+P+I + N+++ +N +A F+E G
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM---QEKG-------- 542
Query: 508 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 567
L PD TYS+++E + E +++ M + GCQ + + LL + G+
Sbjct: 543 --LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAE 600
Query: 568 LEHAFDSLLEAGEIPHPLFFT 588
+ + + G P + +T
Sbjct: 601 AVDLYSKMKQQGLTPDSITYT 621
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 65/299 (21%), Positives = 130/299 (43%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDL Y V+N + K++ K ++ Y +++ C K
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDAL--CNYK----- 269
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHSK 429
+N+A+ M+ +G+ Y L CLCN GRW DA L+ + I+ R
Sbjct: 270 -----NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKIN 322
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488
P +TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 489 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548
FE +S D P+ TY+++++ A + E +++ M+ G +
Sbjct: 383 FE----------LMISKD---CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429
Query: 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ-SNYEKAVAL 606
+ L+ +AG C + + F ++ G +P + +L+ + + EKA+ +
Sbjct: 430 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG-VPPDIITYSILLDGLCKYGKLEKALVV 487
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 73/367 (19%), Positives = 147/367 (40%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
EPD+V + +++N ++ + + Q+ + G+KP Y ++S C
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSL--C-------- 188
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ G +N A++ ME G+ +Y L LCN+GRW+DA ++ + R KP
Sbjct: 189 --KNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK-RKIKP 245
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 489
ITF LI + + G D ++ M + PNI T +++ + +A+++F
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
Y + G PD Y+S++ + + ++ M+ G +
Sbjct: 306 ----------Y-LMETKGC--FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352
Query: 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINA 609
+ L+ + GK ++ + F ++ G P+ + +L +KA+ +
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFED 412
Query: 610 MAYAPFH-ITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668
M + WT + KLEK L + +I + + + +C
Sbjct: 413 MQKREMDGVAPNIWTYNVLLH-GLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMC 471
Query: 669 RSEKERD 675
++ K ++
Sbjct: 472 KAGKVKN 478
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 102/496 (20%), Positives = 199/496 (40%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMXXXXXXXXXXXSWRQAMSVLDWVYGL 219
VLV+ + E+ +T + F + +S L+ T+ + W +A+ + +W+
Sbjct: 110 VLVNSIVEQPLTGLSRFFDSV--KSELLRTD--LVSLVKGLDDSGHWERAVFLFEWLVLS 165
Query: 220 KDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQV 277
+ LK V + ILG+ + A ++ + + L++ L D+ AY ++ +
Sbjct: 166 SNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--DVRAYTTILHAYSRT 223
Query: 278 GLLKELVKLIERMRQK-PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFW 335
G ++ + L ERM++ PS P LV YN +L+ W+ +
Sbjct: 224 GKYEKAIDLFERMKEMGPS----------------PTLVTYNVILDVFGKMGRSWRKILG 267
Query: 336 VFKQLRKSGLK----------PSAATYGLAMES------YRRC-------LLKVLVRAFW 372
V ++R GLK + A GL E+ + C L++ F
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432
+ G EA++ ++ ME+ + Y EL G ++A V+E + + P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK-KGVMPNA 386
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
IT+T +I + G D+ + +F MK+ C PN T NA+L + + S++ E+ +
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKK---SRSNEMIKM 443
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
S+G + P+ T+++ML ++ V++ M G + D+
Sbjct: 444 LCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611
L+ R G + + AG + +L + ++ +I+ M
Sbjct: 494 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 553
Query: 612 YAPFHITERQWTELFE 627
F TE ++ + +
Sbjct: 554 SKGFKPTETSYSLMLQ 569
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 61/283 (21%), Positives = 125/283 (44%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDLV Y V+N + K++ + ++P Y +++ C K
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL--CNYK----- 270
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHSK 429
+N+A+ M+ +G+ Y L CLCN GRW DA L+ + I+ R
Sbjct: 271 -----NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKIN 323
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488
P +TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 489 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548
FE +S D P+ TY+++++ A + + +++ M+ G +
Sbjct: 384 FE----------LMISKD---CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGN 430
Query: 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ L+ +A +C + F ++ G +P + ++ +L
Sbjct: 431 TVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 94/441 (21%), Positives = 178/441 (40%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y L+ AG AL +F+ M E P++ Y++ L+ KL
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNT---------LIDGYCKL-- 253
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
R K +++M K LEP+L+ YN V+N + K V +V ++ + G
Sbjct: 254 RKIDDGFKLLRSMALKG----LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Query: 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408
TY L++ + +EG ++A+ M + G+ + Y L +C
Sbjct: 310 EVTYN------------TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIG 467
G AM +++++ +R P E T+T L+ G++++ + + M D+ P++
Sbjct: 358 AGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 468 TVNAMLKVY----SRNDMFSKAKELFEETTRANSSGY-TFLSG-------DGA------- 508
T NA++ + D + +++ E+ + Y T LSG D A
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 509 ---PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
+KPD TYSS+++ + + +Y+ M G D+ + L+ G
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 566 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625
+ ++E G +P + ++ ++ QS +A L+ + Y ++ + L
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 626 FESNEDRISRDKLEKLLNALC 646
E N I + L+ C
Sbjct: 597 IE-NCSNIEFKSVVSLIKGFC 616
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 78/362 (21%), Positives = 141/362 (38%)
Query: 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFW 372
DL +N V+N Q + ++ K G +P T G LV F
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGS------------LVNGFC 166
Query: 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432
++++AV+ V M + G Y + LC R DA ++I+ + +P
Sbjct: 167 RRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNV 225
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
+T+T L+ + D + M K PN+ T +A+L + +N +AKELFEE
Sbjct: 226 VTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEE 285
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
R + + PD TYSS++ + + ++ M GC D
Sbjct: 286 MVRMS-------------IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 332
Query: 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQS-NYEKAVALINAM 610
+ L+ +A + F + + G + + + + LIQ Q+ + +KA + M
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT-LIQGFFQAGDVDKAQEFFSQM 391
Query: 611 AYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRS 670
+ F I+ WT +LEK L + ++ + + + +C++
Sbjct: 392 DF--FGISPDIWTYNILLG-GLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 448
Query: 671 EK 672
K
Sbjct: 449 GK 450
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FJW6 | PP451_ARATH | No assigned EC number | 0.5931 | 0.7642 | 0.8208 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 857 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-12
Identities = 59/281 (20%), Positives = 105/281 (37%), Gaps = 37/281 (13%)
Query: 217 YGLKDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFNLM-LEDCNLYPD---IAAYHSVA 271
YG+ +++K R V+ L++ G++G A + M E + PD + A
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWK 331
GQV KE+ + +H N E VY +N+C W
Sbjct: 590 ANAGQVDRAKEVYQ--------------MIHEYNIKGTPE----VYTIAVNSCSQKGDWD 631
Query: 332 GVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391
++ ++K G+KP LV G +++A +++ ++G
Sbjct: 632 FALSIYDDMKKKGVKPD------------EVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 392 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 451
+ Y L N W+ A+ + E IKS++ +P T LI + +G +
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKA 738
Query: 452 ISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
+ + MK PN T + +L R D +L +
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352
PD+V YN +++ + + +F +++K G+KP+ TY
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 7e-06
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
P++ T N ++ Y + +A +LF E + +KP+ YTYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-------------IKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 71/370 (19%), Positives = 139/370 (37%), Gaps = 89/370 (24%)
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV---AVTLGQVGLLKELVKLIERMRQKP 294
L GR EAL +F ++ C + Y ++ + L + +K + +E +P
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 295 SKRIKN----MH---------RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341
+ + N MH R+ +D + E +L + ++ V + ++ F +F+++
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 342 KSGLKPSAATYGLAM------------ESYRRCLLKV-----------LVRAFWEEGKIN 378
+ G T+ + + + C+LK L+ + + G I
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 379 EAVAAVRNMEQRGVVGTASV--------YYELACCL----CNNGRWQD-----AML-VVE 420
+A M ++ V S+ Y E A CL ++G D M+ +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 421 KIKSLRHSK-----------PLEITF-TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468
++ L H+K PL+I T L+ G ++D ++F M N+ +
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---RKNLIS 393
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA--- 525
NA++ Y + +KA E+FE + P+ T+ ++L A
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEG-------------VAPNHVTFLAVLSACRYSG 440
Query: 526 -TAHQWEYFE 534
+ WE F+
Sbjct: 441 LSEQGWEIFQ 450
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL G G A+ + + + D + LL ++G + L F+ M
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPD---EVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E ++ P++ Y V LG+ G L E I +M P+ PD
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----------------PI-TPDPA 658
Query: 316 VYNAVLNAC 324
V+ A+LNAC
Sbjct: 659 VWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
L YNA+L A + V ++++ SGLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264
Y L+ L KAGR EAL +F M E + PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 80/374 (21%), Positives = 139/374 (37%), Gaps = 98/374 (26%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD 263
GSW +A V + + +D S +T +++ K G P +AL + LM E N+ PD
Sbjct: 337 GSWGEAEKV----FSRMETKDAVS---WTAMISGYEKNGLPDKALETYALM-EQDNVSPD 388
Query: 264 ---IAAYHSVAVTLGQVGLLKELVKLIER---------------MRQKPSKRI------- 298
IA+ S LG + + +L +L ER M K K I
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK-CKCIDKALEVF 447
Query: 299 KNMHRKN---WDPV-----------------------LEPDLVVYNAVLNACVPSHQWKG 332
N+ K+ W + L+P+ V A L+AC G
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI----G 503
Query: 333 VFWVFKQLRKSGLKPSAATYGLAMESY-RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391
K++ L+ G+ + + LL + VR G++N A N ++
Sbjct: 504 ALMCGKEIHAHVLRT-----GIGFDGFLPNALLDLYVRC----GRMNYAWNQF-NSHEKD 553
Query: 392 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 451
VV + L +G+ A+ + ++ P E+TF L+ + G +
Sbjct: 554 VVS----WNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQG 608
Query: 452 ISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509
+ F M++ PN+ ++ D+ +A +L E Y F+ + P
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVV------DLLGRAGKLTE--------AYNFI--NKMP 652
Query: 510 LKPDEYTYSSMLEA 523
+ PD + ++L A
Sbjct: 653 ITPDPAVWGALLNA 666
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 857 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.7 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.7 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.67 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.65 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.62 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.54 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.27 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.25 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.23 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.21 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.21 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.21 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.2 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.19 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.18 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.14 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.12 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.11 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.09 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.07 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.05 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.0 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.99 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.98 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.97 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.95 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.93 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.84 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.79 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.66 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.55 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.47 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.3 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.2 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.15 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 98.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.96 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.71 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.69 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.68 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.61 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.58 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.56 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.44 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.36 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.32 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.27 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.23 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.18 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.15 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.69 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.68 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.25 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.2 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.75 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.62 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.61 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.32 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 94.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.7 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 94.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 94.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 94.42 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 93.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 93.72 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 92.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 92.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 92.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 92.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 92.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 91.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 91.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 90.49 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 90.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.15 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 89.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 89.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 88.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 88.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 88.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 87.3 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 86.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 86.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 85.8 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.66 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 84.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.34 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 84.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 83.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 83.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 82.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 81.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 81.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 81.24 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 80.29 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=766.00 Aligned_cols=608 Identities=15% Similarity=0.133 Sum_probs=559.4
Q ss_pred HHHHHhhhhhcccccccccc---cccchhchHHHHHHHHhhhhhcccccccchhhhhhhcccccccccCC----------
Q 003016 86 ERIERLKFRQLASESKEFAG---DNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWR---------- 152 (857)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~~~~~~~---------- 152 (857)
..+.+|...++.|+..+++. +|.....+..++++|+.+++.|+..|+.+.+.++++ |.++
T Consensus 173 ~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~-------y~k~g~~~~A~~lf 245 (857)
T PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM-------YVKCGDVVSARLVF 245 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH-------HhcCCCHHHHHHHH
Confidence 34458988899999999864 677777889999999999999999999998888766 3333
Q ss_pred -----CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC
Q 003016 153 -----SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 153 -----~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
++..+|+.++..+.+.|.+++|+.+|.+|.+.|+.||..||+.+|.+|++.|+++.|.++|..+.+.+ ..||
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~d 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG---FAVD 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC---Cccc
Confidence 45567888888889999999999999999999999999999999999999999999999999998874 5589
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+||+||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------------- 384 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDN------------- 384 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------
Confidence 99999999999999999999999999986 899999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.||..||+++|.+|++.|+++.|.++|+.|.+.|+.|+..+| |+||++|+++|++++|.++|++|
T Consensus 385 --~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~------------n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 385 --VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA------------NALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred --CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH------------HHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCH
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNI 466 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~ 466 (857)
.++++ .+||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|.++.+.+++..|.+ ++.+|.
T Consensus 451 ~~~d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 451 PEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CCCCe----eeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 87654 4699999999999999999999999986 6999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 546 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~ 546 (857)
.++|+||++|+++|++++|.++|++| . ||.++||+||.+|+++|+.++|.++|++|.+.|+.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~---~---------------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH---E---------------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc---C---------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999987 2 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHH
Q 003016 547 LDQTKHAWLLVEASRAGKCHLLEHAFDSLL-EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625 (857)
Q Consensus 547 pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~-~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~L 625 (857)
||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++| +++||..+|++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999999999999999999999 5699999999999999999999999999999999 799999999999
Q ss_pred HHHhhhc----------------------------------cCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHHHhc
Q 003016 626 FESNEDR----------------------------------ISRDKLEKLLNALCNCNAASSEITVSNL--SRALHALCR 669 (857)
Q Consensus 626 l~a~~~~----------------------------------g~~e~~~~l~~~m~~~g~~p~~~~~~~~--~~~l~~~~~ 669 (857)
+.+|..+ |+++++.++++.|++.|+. ++|+++|+ .+.+|.|..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~-k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT-VDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC-CCCCccEEEECCEEEEEec
Confidence 9998744 5556777888999999999 89999998 788999999
Q ss_pred cCchhhhHhhhhccccccccCcchhhhhhhhhhhccCccccccccccccccccCCCCCC---cCCCccccccccCCCCcc
Q 003016 670 SEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQ---KTDVAVDIDSINHSSLSR 746 (857)
Q Consensus 670 ~~~~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k~~~l~~---klaia~~~i~~~~~~~ir 746 (857)
+|++||..+.||. .|+.+.. +|++.||+|++++++ ++++|+||..|.+ |||||||||++|||+|||
T Consensus 743 ~d~~h~~~~~i~~--------~l~~l~~--~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~ 811 (857)
T PLN03077 743 DDESHPQIKEINT--------VLEGFYE--KMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIW 811 (857)
T ss_pred CCCCCcchHHHHH--------HHHHHHH--HHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEE
Confidence 9999999999999 6777777 777999999999998 5477889999887 999999999999999999
Q ss_pred ccC--cccccccccccccccCCCCCccccc
Q 003016 747 QAD--ADTEMFSKALSYIHSNDRPSNLCID 774 (857)
Q Consensus 747 i~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (857)
|.| ..|.|||.+.+||+.-.++-=|+=|
T Consensus 812 i~knlr~c~dch~~~k~~s~~~~r~i~~rd 841 (857)
T PLN03077 812 VTKNLYMCENCHNTVKFISKIVRREISVRD 841 (857)
T ss_pred EeCCCEeCccHHHHHHHHHHHhCeEEEEec
Confidence 964 5899999999999874444333333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-77 Score=718.25 Aligned_cols=553 Identities=13% Similarity=0.145 Sum_probs=423.5
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG-LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 230 (857)
..+...++.++..+.+.|.+.+|+.+|+.|...+ +.||..+|+.++.+|++.++++.|.++|..|.+.+ ..||..+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHH
Confidence 3345578999999999999999999999999864 78999999999999999999999999999998874 4579999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
||+||++|+++|+++.|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.| +
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~ 220 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG---------------S 220 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------C
Confidence 99999999999999999999999986 899999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
.||..+|+.+|.+|++.|..+.+.+++..|.+.|+.||..+| |+||++|+++|++++|.++|++|.++
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~------------n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS------------CALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH------------HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998 55666666666666666666665432
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHH
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTV 469 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~ 469 (857)
|..+||+||.+|+++|++++|+++|++|.. .|+.||..||+++|.+|++.|.+++|.++|..|.+ ++.||..+|
T Consensus 289 ----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 289 ----TTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 344566666666666666666666666655 55666666666666666666666666666666555 455666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
|+||++|+++|++++|.++|++|. .||.+|||+||.+|+++|+.++|.++|++|.+.|+.||.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~-----------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP-----------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 666666666666666666666552 255556666666666666666666666666655666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a 628 (857)
.||++++.+|++.|.+++|.++|+.|.+. |+.|+..+|++||++|+++|++++|.+++++| ++.|+..+|++|+.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 66666666666666666666666666542 55566666666666666666666666665555 555555555555555
Q ss_pred h----------------------------------hhccCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHHHhccCc
Q 003016 629 N----------------------------------EDRISRDKLEKLLNALCNCNAASSEITVSNL--SRALHALCRSEK 672 (857)
Q Consensus 629 ~----------------------------------~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~--~~~l~~~~~~~~ 672 (857)
| .+.|++++|.++++.|++.|+. +.|+++|+ .+.+|.|..++.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~-k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS-MHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc-cCCCeeEEEECCeEEEEccCCC
Confidence 5 4556667777888888888988 78888877 677899999999
Q ss_pred hhhhHhhhhccccccccCcchhhhhhhhhhhccCccccccccccccccccCCCCCC---cCCCccccccccCCCCccccC
Q 003016 673 ERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQ---KTDVAVDIDSINHSSLSRQAD 749 (857)
Q Consensus 673 ~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k~~~l~~---klaia~~~i~~~~~~~iri~~ 749 (857)
.||..+.|+. .|+.+.. +|++.||+|++++++|++++++|+..|.+ |||||||+|++|||+||||.|
T Consensus 583 ~h~~~~~i~~--------~l~~l~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~k 652 (697)
T PLN03081 583 LHPQSREIYQ--------KLDELMK--EISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQ 652 (697)
T ss_pred CCccHHHHHH--------HHHHHHH--HHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEec
Confidence 9999998988 5666666 77799999999999999999999998887 999999999999999999954
Q ss_pred --cccccccccccccccCCCCCcccccc
Q 003016 750 --ADTEMFSKALSYIHSNDRPSNLCIDM 775 (857)
Q Consensus 750 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (857)
..|.|||.+.+||+.-.++--|+=|.
T Consensus 653 nlr~c~dch~~~k~~s~~~~r~i~~rd~ 680 (697)
T PLN03081 653 SHRICKDCHKVIKFIALVTKREIVVRDA 680 (697)
T ss_pred CCEECCCchhhHHHHhhhcceEEEEecC
Confidence 58999999999998755544444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=674.34 Aligned_cols=696 Identities=15% Similarity=0.090 Sum_probs=567.8
Q ss_pred HHHHhhhhhcccccccccc---cccchhchHHHHHHHHhhhhhcccccccchhhhhhhccccc--------ccccCCCcH
Q 003016 87 RIERLKFRQLASESKEFAG---DNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWH--------PEKRWRSEA 155 (857)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~ 155 (857)
.+.+|...++.++..++.. +|.....+..+..+|..+++.+...|+.+.+.++++..... ...-..+++
T Consensus 73 l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL 152 (857)
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCe
Confidence 3335555555555555432 56666778889999999999999888888888776511000 000123566
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.+|+.++..+++.|.+++|+.+|++|...|+.||.+||+.++++|+..+++..+.++|..+.+.+ ..||+++||+||
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~n~Li 229 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG---FELDVDVVNALI 229 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC---CCcccchHhHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999874 457999999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~ 315 (857)
.+|+++|++++|.++|++|++ ||.+|||+||.+|++.|++++|+++|.+|...| +.||.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---------------~~Pd~~ 289 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS---------------VDPDLM 289 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCChh
Confidence 999999999999999999986 899999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------------HhHHHHHHHHHHHcCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYR-------------------RCLLKVLVRAFWEEGK 376 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~-------------------~~~~~~Li~~y~k~g~ 376 (857)
||+++|.+|++.|+++.|.+++..|.+.|+.||..+|++++.+|. ..+||+||.+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888887 6688999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+ .|+.|+..+|++||++|+++|++++|.++|+
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999988 7888999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHH
Q 003016 457 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 457 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l 536 (857)
.|.+ +|+++||+||.+|+++|+.++|+++|++|.. + ++||.+||+++|.+|++.|.++.+.++
T Consensus 449 ~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-------------~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 449 NIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-------------LKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred hCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-------------CCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 8886 7888999999999999999999999999974 4 889999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCc
Q 003016 537 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFH 616 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~ 616 (857)
+..|.+.|+.+|..++++||++|+++|++++|.++|+.| .||..+||+||.+|+++|+.++|+++|++|...|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHhccCchhhhHhhhhcccccccc------
Q 003016 617 ITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDI------ 689 (857)
Q Consensus 617 p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~v~~------ 689 (857)
||..||..++.+|.+.|.++++.++++.|. +.|+.|+...+ ...+..++..|..+++.+.+..++...+.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y---~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY---ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH---HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999999999999999999999999 68888765444 44588888899999998888776422221
Q ss_pred -----------------------------------------Ccchhhhh-hhhhhhccCcc--ccccccccccccccCCC
Q 003016 690 -----------------------------------------SPLHGIHE-AFDVKETENVP--SSSASMMFENADLGADP 725 (857)
Q Consensus 690 -----------------------------------------~~L~~l~~-~~~~~~~g~vp--~~~~~l~~~~~e~k~~~ 725 (857)
+.++++.+ .-.|++.|..+ .++|+-.+ .+
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~----~~--- 736 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK----GK--- 736 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC----CE---
Confidence 22222222 11222333322 22222110 00
Q ss_pred CCCcCCCccccccccCCCCccccCcccccccccccccccCCCCCcccccccccccccccccCChhhhHHHHHhhhhcccC
Q 003016 726 LPQKTDVAVDIDSINHSSLSRQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805 (857)
Q Consensus 726 l~~klaia~~~i~~~~~~~iri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (857)
-..+.-|.-+.|....|.-...++....+..||+|+ ++++. |+++++|+..+.+|||+|-- +.||-....
T Consensus 737 ---~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~---~~~~~-~~~~~~k~~~~~~hse~la~---a~~l~~~~~ 806 (857)
T PLN03077 737 ---VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS---ESSSM-DEIEVSKDDIFCGHSERLAI---AFGLINTVP 806 (857)
T ss_pred ---EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC---cchhc-cccHHHHHHHHHhccHHHHH---HHhhhcCCC
Confidence 022334555666666666667777778888999999 77766 77889999999999999976 777766544
Q ss_pred CchhhhhhhcccccCCcccCCCCChHHHHHHHHHhhh---ccCccc-ccccCCC
Q 003016 806 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESRE---KDGIFF-PFEHGKK 855 (857)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ 855 (857)
. ..|.+-+. -|+=+.|-+-.-.+++|. -|| ||..=| ||+.|+=
T Consensus 807 ~-~~i~i~kn-lr~c~dch~~~k~~s~~~-----~r~i~~rd~~rfh~f~~g~c 853 (857)
T PLN03077 807 G-MPIWVTKN-LYMCENCHNTVKFISKIV-----RREISVRDTEQFHHFKDGEC 853 (857)
T ss_pred C-CeEEEeCC-CEeCccHHHHHHHHHHHh-----CeEEEEecCCcceeCCCCcc
Confidence 3 23333332 133344433333444443 355 666544 5666653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=603.54 Aligned_cols=431 Identities=16% Similarity=0.226 Sum_probs=253.8
Q ss_pred ccCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC
Q 003016 149 KRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLM-FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 149 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
.....+...+..++..+.+.|.+.+|+++|++|.+.|+. ++..+++.++.+|++.|.++.|..+|+.|. .||
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd 436 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPT 436 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCC
Confidence 344556777888888888888888888888888888753 455555556666666666666666665552 145
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+||.||.+|++.|+++.|.++|+.|.+. |+.||..+||+||.+|++.|++++|.++|++|...|
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------- 502 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------- 502 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------------
Confidence 666666666666666666666666666653 566666666666666666666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.||.++||+||.+|++.|++++|.++|++|.+.|+.||..|| |+||.+|++.|++++|.++|++|
T Consensus 503 --v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY------------nsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 503 --VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF------------NALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred --CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH------------HHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666665 55555555555555555555555
Q ss_pred hh--cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCC
Q 003016 388 EQ--RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEP 464 (857)
Q Consensus 388 ~~--~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p 464 (857)
.. .++.||..+|++||.+|++.|++++|.++|++|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+ ++.|
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 43 34555555555555555555555555555555555 45555555555555555555555555555555554 4555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
|..+|++||++|++.|++++|.++|++|.+.| +.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555555 55555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 624 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~ 624 (857)
+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.+++++|...|+.||..+|++
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 003016 625 LFES 628 (857)
Q Consensus 625 Ll~a 628 (857)
|+..
T Consensus 795 LIgl 798 (1060)
T PLN03218 795 ITGL 798 (1060)
T ss_pred HHHH
Confidence 5543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=585.67 Aligned_cols=456 Identities=15% Similarity=0.244 Sum_probs=332.5
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
++..+|+.|+..+++.|.+++|+.+|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.+ ..||..+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCCCHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777776553 346777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCChhhhhhhhhcCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ--KPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~~l~~m~~k~f~~~~ 310 (857)
+||.+|++.|++++|.++|++|... |+.||.+|||+||.+|++.|++++|.++|++|.. .| +
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g---------------i 575 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---------------I 575 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---------------C
Confidence 7777777777777777777777763 7777777777777777777777777777777764 34 6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
.||.++|+++|.+|++.|++++|.++|+.|.+.|+.|+..+| |+||.+|++.|++++|.++|++|.+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty------------nsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY------------TIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777777777777777777776 77777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHH
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTV 469 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~ 469 (857)
|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|+.|.. ++.||..+|
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7777777777777777777777777777777777 67777777777777777777777777777777766 677777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
|+||.+|++.|++++|.++|++|...| +.||..||+++|.+|++.|+++.|.++|.+|.+.|+.||.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~G-------------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLG-------------LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777777777777777777 7777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH----HcC-------------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 550 TKHAWLLVEAS----RAG-------------------KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 550 ~t~~~Ll~~~~----~~G-------------------~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
.+|++++..|. +++ ..++|..+|++|.+.|+.||..+|+.+|.+++..+..+.+..+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 77777765532 111 2355777777777777777777777777666666777777777
Q ss_pred HHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChh
Q 003016 607 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEI 655 (857)
Q Consensus 607 ~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~ 655 (857)
++.|...+..|+..+|++|+.+++.. .++|..++++|.+.|+.|+..
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77776667777777777777776543 356777777777777776543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=592.11 Aligned_cols=585 Identities=14% Similarity=0.143 Sum_probs=492.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH
Q 003016 186 LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~ 265 (857)
..++..+++.+|.++.+.|++++|.++|++|...+ +..||..+|++++.+|++.++++.|.+++..|... |+.||..
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchH
Confidence 34667799999999999999999999999997643 23479999999999999999999999999999985 9999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
+||.|+.+|++.|++++|.++|++| ..||.++||++|.+|++.|++++|.++|++|.+.|+
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m-------------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEM-------------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcC-------------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 578999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.||..|| +.++.+|++.|..+.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|..
T Consensus 221 ~p~~~t~------------~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 287 (697)
T PLN03081 221 DAEPRTF------------VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE- 287 (697)
T ss_pred CCChhhH------------HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 9999998 899999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~ 504 (857)
+|.++||++|.+|++.|++++|.++|++|.+ ++.||..||+++|.+|++.|.+++|.+++.+|.+.|
T Consensus 288 ----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------- 355 (697)
T PLN03081 288 ----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------- 355 (697)
T ss_pred ----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence 6999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003016 505 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 584 (857)
Q Consensus 505 ~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~ 584 (857)
+.||..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 356 -----~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 356 -----FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred -----CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhh-CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003016 585 LFFTEMLIQAIVQSNYEKAVALINAMAY-APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRA 663 (857)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~ 663 (857)
.||+++|.+|.+.|.+++|.++|+.|.. .|+.|+..+|+.++.++++.|++++|.++++.| ++.|+.. .+...
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~---~~~~L 500 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN---MWAAL 500 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH---HHHHH
Confidence 9999999999999999999999999976 699999999999999999999999999988654 5555443 34555
Q ss_pred HHHHhccCchhhhHhhhhccc----cccc-----------cCcchhhhhhh-hhhhccC--ccccccccccccccccCCC
Q 003016 664 LHALCRSEKERDLSSSAHFGS----QAID-----------ISPLHGIHEAF-DVKETEN--VPSSSASMMFENADLGADP 725 (857)
Q Consensus 664 l~~~~~~~~~~~~~~~i~~~~----~~v~-----------~~~L~~l~~~~-~~~~~g~--vp~~~~~l~~~~~e~k~~~ 725 (857)
+.+.+..+..+.+......+. .++. .+.++++.+++ +|++.|. .|.++|+-.+ .+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~----~~--- 573 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK----KQ--- 573 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEEC----Ce---
Confidence 666666666655544322211 1111 16777777744 3456775 4666665221 00
Q ss_pred CCCcCCCccccccccCCCCccccCcccccccccccccccCCCCCcccccccccccccccccCChhhhHHHHHhhhhcccC
Q 003016 726 LPQKTDVAVDIDSINHSSLSRQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805 (857)
Q Consensus 726 l~~klaia~~~i~~~~~~~iri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (857)
-..+..|..+.|....|.-....+....+..||.|+ ++++..|+++++|+..+.+|||+|-- +.||....+
T Consensus 574 ---~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~---~~~~~~~~~~~~~~~~~~~hsekla~---a~~l~~~~~ 644 (697)
T PLN03081 574 ---DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE---ENELLPDVDEDEEKVSGRYHSEKLAI---AFGLINTSE 644 (697)
T ss_pred ---EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC---cchhhccccHHHHHHHHHhccHHHHH---HhhCccCCC
Confidence 022334555666666666666677777788899999 99999999999999999999999976 777776544
Q ss_pred CchhhhhhhcccccCCcccCCCCChHHHHHHHHHhhh---ccCccc-ccccCCC
Q 003016 806 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESRE---KDGIFF-PFEHGKK 855 (857)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ 855 (857)
.. .|.+-+.. |+=+.|-+-.-.+++|. -|| ||..=| ||..|+=
T Consensus 645 ~~-~i~i~knl-r~c~dch~~~k~~s~~~-----~r~i~~rd~~rfh~f~~g~c 691 (697)
T PLN03081 645 WT-PLQITQSH-RICKDCHKVIKFIALVT-----KREIVVRDASRFHHFKLGKC 691 (697)
T ss_pred CC-eEEEecCC-EECCCchhhHHHHhhhc-----ceEEEEecCCccccCCCCcc
Confidence 33 33333331 33333433333444432 355 666544 5776653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-21 Score=240.53 Aligned_cols=456 Identities=11% Similarity=0.041 Sum_probs=328.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 162 ~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
...+.+.|.+++|..++..+.... +.+..++..+...+...|+++.|.+.|+.+++.. +.+...+..+...|...
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE----PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHC
Confidence 344455566666666666665432 3455566666666666677777777776665432 22455666666666677
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
|++++|.+.|+.+... .+.+..++..+...+.+.|+.++|..+|.++...+ +.+...+..+.
T Consensus 513 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~l~ 574 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN----------------PQEIEPALALA 574 (899)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------ccchhHHHHHH
Confidence 7777777777766652 23356666666667777777777777777665542 34556677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
..+...|++++|..+++.+.+.. ..+..+ |..+...|.+.|++++|...|+.+.+.+. .+...|..
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 640 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEA------------WLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLL 640 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 77788888888888888776543 223333 37888888888888888888888876542 34556788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+..+|.+.|++++|...|+++.. ..+.+..++..+...+...|++++|..+++.+....+.+...+..+...|.+.|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 88888888888888888888876 2344567788888888888888888888888887666677888888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
+++|.+.|.++...+ |+..++..+..++...|++++|.+.+..+.+.. +.+...+..+...|..
T Consensus 719 ~~~A~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 719 YPAAIQAYRKALKRA---------------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHHhhC---------------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999998888755 666777788888888899999999888888743 4466788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHhhhccCHHHHHH
Q 003016 562 AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHI-TERQWTELFESNEDRISRDKLEK 640 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p-~~~~~~~Ll~a~~~~g~~e~~~~ 640 (857)
.|++++|..+|+.+.+.. ++++.+++.+...+...|+ .+|+..+++.... .| +..++..+-..+...|+.+.|..
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888763 4567888888888888888 7799998887643 22 33566677777888899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHHhccCchhhhHhhh
Q 003016 641 LLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSA 680 (857)
Q Consensus 641 l~~~m~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~i 680 (857)
.++.+.+.+.. .+.+. ......++..|+..++.+.+
T Consensus 859 ~~~~a~~~~~~--~~~~~--~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 859 LLRKAVNIAPE--AAAIR--YHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHhhCCC--ChHHH--HHHHHHHHHcCCHHHHHHHH
Confidence 99999877643 33222 33355566777777777643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-21 Score=239.11 Aligned_cols=435 Identities=12% Similarity=0.030 Sum_probs=373.8
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
.+...+..+...+...|.+++|...|.++.+.. +.+...+..+...+...|+++.|.+.++.+.... +.+..+++
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 537 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID----PKNLRAIL 537 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHH
Confidence 455677778888889999999999999998764 3455677888889999999999999999998753 34788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.+...|.+.|+.++|...|+++... .+.+...+..+...|...|++++|..+++.+... .+.
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~ 599 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADA----------------APD 599 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCC
Confidence 9999999999999999999999873 3456788999999999999999999999999875 456
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
+..+|..+..++...|++++|...|+.+.+.. |+ ... +..+...|.+.|++++|..+|+++.+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALA------------LLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999998754 33 333 3789999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 392 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 392 ~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
. .+..+|..++..+...|++++|..+++.+.. . .+.+...+..+...+...|++++|...|..+.... |+..++..
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 741 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSSQNAIK 741 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCchHHHH
Confidence 2 3567899999999999999999999999987 3 35567788888999999999999999999998732 55578888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t 551 (857)
+..+|.+.|++++|.+.+.++.... ..+...+..+...|...|+.++|.++|+++.+.. +.+..+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH--------------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9999999999999999999998865 2366788888899999999999999999999864 456788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 552 ~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
++.+...+...|+ .+|..+++.+.+.. +-+...+..+...+...|++++|...++++...+.. +..++..+..++..
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 9999999999999 88999999988752 235567788888899999999999999999876543 78899999999999
Q ss_pred ccCHHHHHHHHHHHH
Q 003016 632 RISRDKLEKLLNALC 646 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~ 646 (857)
.|+.++|.++++.|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-18 Score=190.49 Aligned_cols=314 Identities=12% Similarity=0.129 Sum_probs=236.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHH
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---IAAYHSVAVTLG 275 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd---~~t~~~li~~~~ 275 (857)
.+...|+++.|...|..+++.. +.+..++..+...|.+.|++++|..+++.+... +..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Confidence 3456688888888888887642 235678888888888889999999988888763 11111 356788888888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
+.|++++|..+|.++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---
Confidence 8999999999999887642 456778888888899999999999999988876543322111
Q ss_pred HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
...+..+...|.+.|+.++|...|+++.+.+. .+...+..+...|.+.|++++|..+|+++.. .+......++
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~ 252 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVL 252 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHH
Confidence 00136677788889999999999998876542 2355677788889999999999999999876 2222224567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 515 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~ 515 (857)
+.+..+|.+.|++++|...++.+... .|+...+..+...+.+.|++++|..+|+++.+.. |+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~---------------P~~~ 316 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH---------------PSLR 316 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------cCHH
Confidence 88888888999999999988888763 3566667888888999999999999998888744 8888
Q ss_pred HhhhhHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003016 516 TYSSMLEASAT---AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565 (857)
Q Consensus 516 t~~~ll~a~~~---~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~ 565 (857)
+++.++..+.. .|+.+++..++++|.+.++.|++. ..|++||..
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 88888877664 458888888999888888777776 336666653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-17 Score=185.15 Aligned_cols=303 Identities=11% Similarity=0.064 Sum_probs=210.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (857)
..+...|++++|...|.++.... +.+..+|..+...+...|++++|..+++.+...+..++...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 106 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD----------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR 106 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence 34456677777777777776642 23455667777777777777777777777766432222111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 352 ~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
. ..+..|...|.+.|++++|..+|+++.+.+ ..+..+++.++..|.+.|++++|.+.++.+.. .+..+.
T Consensus 107 ~---------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 175 (389)
T PRK11788 107 L---------LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSL 175 (389)
T ss_pred H---------HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcc
Confidence 0 113667777777778888887777776643 23455677777788888888888888877766 332221
Q ss_pred ----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 003016 432 ----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507 (857)
Q Consensus 432 ----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~ 507 (857)
...+..+...+.+.|++++|...|+++.+..+.+...+..+...|.+.|++++|.++|+++...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------- 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD----------- 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------
Confidence 12345566667778888888888888776434456677778888888888888888888887644
Q ss_pred CCCCCC--HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003016 508 APLKPD--EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585 (857)
Q Consensus 508 ~~~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~ 585 (857)
|+ ..+++.+..+|...|++++|...++.+.+. .|+...+..+...+.+.|++++|..+++.+.+. .|+..
T Consensus 245 ----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 245 ----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 43 356777888888888888888888888764 466666677777888888888888888877664 57777
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHhhhCCCccCHH
Q 003016 586 FFTEMLIQAIV---QSNYEKAVALINAMAYAPFHITER 620 (857)
Q Consensus 586 ~~~~li~~~~~---~g~~~~A~~l~~~M~~~~~~p~~~ 620 (857)
.++.++..+.. .|+.++|+.++++|...++.|++.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88877777664 457888888888887766666554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-14 Score=150.78 Aligned_cols=450 Identities=13% Similarity=0.094 Sum_probs=329.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~ 233 (857)
.+++-+.|+. |...+.+.++.-+|+.|+..|+..+...-..|++.-+-.++-+--..-+++.+..... ...+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-GEDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-cccccccc--
Confidence 4455566655 5566778888899999999999999888777777655433222222223333322111 12244455
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
|.|.+.+ -+|+..+ .+..||.+||.|+|+-...+.|.+++.+-.... .+.+
T Consensus 191 ------K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---------------~kv~ 241 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAK---------------GKVY 241 (625)
T ss_pred ------ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---------------heee
Confidence 4455444 4555544 477899999999999999999999999998876 7889
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHH----HHHHHHHhh
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEA----VAAVRNMEQ 389 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A----~~lf~~m~~ 389 (857)
..+||.+|.+-.- ....++..+|....+.||..|| |+++.+.++.|+++.| .+++.+|++
T Consensus 242 ~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf------------NalL~c~akfg~F~~ar~aalqil~EmKe 305 (625)
T KOG4422|consen 242 REAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF------------NALLSCAAKFGKFEDARKAALQILGEMKE 305 (625)
T ss_pred HHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH------------HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999988553 3337899999999999999999 9999999999988765 567788999
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHh-cCC--CC---C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQD-AMLVVEKIKS-LRH--SK---P-LEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~-A~~l~~~m~~-~~g--~~---p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
-|+.|...+|..+|.-+++-++..+ |..++.+++. ..| ++ | |..-|...+..|.+..+.+.|.++..-...|
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 9999999999999999999888754 4555555543 112 22 2 4456888899999999999999999988874
Q ss_pred -----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 462 -----CEPNI---GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 462 -----~~p~~---~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
+.|+. .-|..+..+.|+....+.-+..++.|.-.- +-|+..+...++.|....+.++..
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-------------y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-------------YFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-------------ecCCchhHHHHHHHHhhcCcchhH
Confidence 44443 346778888999999999999999998766 779999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CH-------------HHHHHHH-------HHHHHCCCCCCHHHHHHHHH
Q 003016 534 EYVYKGMALSGCQLDQTKHAWLLVEASRAG-KC-------------HLLEHAF-------DSLLEAGEIPHPLFFTEMLI 592 (857)
Q Consensus 534 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-~~-------------~~A~~~~-------~~m~~~gi~p~~~~~~~li~ 592 (857)
-+++..++..|...+...-.-++..+++.. .. +-|..++ .+|..... .....+++..
T Consensus 453 pRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~ 530 (625)
T KOG4422|consen 453 PRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAI 530 (625)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHH
Confidence 999999988875555444444444444333 00 0011222 22333333 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHhhhCC----CccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHh
Q 003016 593 QAIVQSNYEKAVALINAMAYAP----FHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~----~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~l~~~~ 668 (857)
.+.|.|..++|.+++.-....+ ..|....+.-|+.+.....+...|..+++.|...+ .+.+.-+.+.++.-|
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n----~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN----LPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----chhhhHHHHHHHHhc
Confidence 9999999999999999885543 44555667788889999999999999999997664 444555666677655
Q ss_pred ccC
Q 003016 669 RSE 671 (857)
Q Consensus 669 ~~~ 671 (857)
.-+
T Consensus 607 ~iN 609 (625)
T KOG4422|consen 607 AIN 609 (625)
T ss_pred CcC
Confidence 544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-13 Score=168.89 Aligned_cols=445 Identities=10% Similarity=0.012 Sum_probs=305.5
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.....+..|...+..+......|+... ...-..+...|++++|...|+.+++.. +.+..++..|...|.+.|+++
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~----P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN----PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHH
Confidence 333334455555555444332333222 122345667899999999999998753 237889999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSV------------AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
+|+..|++..+...-.++...|..+ ...+.+.|++++|...|++..... +.+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~----------------P~~ 384 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD----------------NTD 384 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCC
Confidence 9999999988732111222223222 345678999999999999998853 446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH------------------------------Hh
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYR------------------------------RC 362 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~------------------------------~~ 362 (857)
...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+. ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 7778888899999999999999999998753 33 222211111110 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.+..+...+...|++++|...|++..+.+.. +...+..+...|.+.|++++|...|++..... +.+...+..+...+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l 539 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 2234556677788888888888887766532 34556677788888888888888888876522 12333333344455
Q ss_pred HcCCCHHHHHHHHHHHhhC-CCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 443 MDGGHIDDCISIFQHMKDH-CEPNIG---------TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~-~~p~~~---------~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
...++.++|...++.+... ..++.. .+..+...+...|+.++|.++++. ...
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------------------~p~ 601 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------------------QPP 601 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------------------CCC
Confidence 6778888888888776541 112211 123445667788888888888772 223
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEML 591 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li 591 (857)
+...+..+...+...|+.++|+..|++..+.. +.+...+..+...|...|+.++|...++...+. .| +...+..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 44566677788889999999999999998742 334678888999999999999999999987754 33 455667777
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC-Ccc----CHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhH
Q 003016 592 IQAIVQSNYEKAVALINAMAYAP-FHI----TERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITV 657 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~-~~p----~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~ 657 (857)
..+...|++++|.++++++.... -.| +...+..+-..+...|+.+.|...++... ..|+.|..|..
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 78888999999999999976532 222 22455556667788899999999887765 44566655553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-12 Score=163.44 Aligned_cols=444 Identities=9% Similarity=-0.021 Sum_probs=303.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~ 237 (857)
...-+.+...|.+++|+..|+...... +|+.. ....+.......|+.++|++.++.+.+.. +.+...+..+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~l 190 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 334456778899999999999988654 34432 11112222234589999999999987753 2367788899999
Q ss_pred HHHcCChhHHHHHHHHhHHcCC-----------------CCCC-HHHHH-------------------------------
Q 003016 238 LGKAGRPHEALRIFNLMLEDCN-----------------LYPD-IAAYH------------------------------- 268 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~g-----------------i~pd-~~t~~------------------------------- 268 (857)
+...|+.++|+..|+++..... ..++ ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998754210 0000 00010
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 269 ---SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 269 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
.....+...|++++|...|++..+.. +.|...+..+..++.+.|++++|...|++..+...
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~----------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN----------------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11234567788999999998887742 34788899999999999999999999999987643
Q ss_pred CC-CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KP-SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~p-d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.. +...+..++..........+...+.+.|++++|...|++..+... .+...+..+...|...|++++|+..|++..+
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 111221222111111112335567788999999999998887653 3455677788888999999999999988876
Q ss_pred cCCCCCcHHHHH------------------------------------------HHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 425 LRHSKPLEITFT------------------------------------------GLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 425 ~~g~~pd~~t~~------------------------------------------~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
.. +.+...+. .+...+...|++++|...|++..+..
T Consensus 414 ~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 414 MD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred hC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 21 11122221 12234556899999999999988755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhh-----------------------
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYS----------------------- 518 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~----------------------- 518 (857)
+-+...+..+...|.+.|++++|...|++..... |+. ..+.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---------------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---------------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5567788889999999999999999999987744 321 1111
Q ss_pred ---------------------hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 519 ---------------------SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 519 ---------------------~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
.+...+...|+.++|..+++ ..+.+...+..+...+.+.|++++|...|+...+
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233444556666665554 1234455666777778888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 578 AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 578 ~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~-~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
.. +.+...+..+...+...|++++|+..++.... ..|+ ..++..+-.++...|+.++|.++++.+.+..
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 52 23567888888888899999999999987653 3333 3455556666777889999999998887654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-13 Score=162.77 Aligned_cols=332 Identities=10% Similarity=-0.002 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~ 237 (857)
...++..+.+.|.+.+|..+++........+ ...+..+..++...|+++.|...++.+....+ .+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----CQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHH
Confidence 3566677778899999999988888775333 33444555666678999999999988876532 356678888888
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
|.+.|++++|...|++.... -+.+...|..+...+...|++++|...++.+.... +.+...+
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------P~~~~a~ 181 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------PPRGDMI 181 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------CCCHHHH
Confidence 88999999999999888762 12346778888888899999999999888876543 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..+ ..+...|++++|..+++.+.+....++...+ ..+...+.+.|+.++|...|+...+.+. .+..
T Consensus 182 ~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~------------~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 182 ATC-LSFLNKSRLPEDHDLARALLPFFALERQESA------------GLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHH------------HHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 333 3477889999999888888766433333332 4556778888999999999988887653 3466
Q ss_pred HHHHHHHHHHHCCCHHH----HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQD----AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~----A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+..+...|.+.|++++ |...|++.... .+.+...+..+...+.+.|++++|...++......+.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 67778888888888875 78888887762 2334567778888888888888888888888774445567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh-hhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY-SSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
..|.+.|++++|.+.|+++.... |+...+ ..+..++...|+.++|...|+...+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~---------------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK---------------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888887754 655443 33456677888888888888887763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-13 Score=159.60 Aligned_cols=364 Identities=14% Similarity=0.087 Sum_probs=237.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
..-++..+.+.|+++.|..+++..+...+. +...+..+...+...|+++.|...|+++... -+.+...|..+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN----GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344566677778888888888777664322 3444555556666688888888888888763 1234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
.+.+.|++++|...|++.... -+.+...|..+...+...|++++|...++.+......+... +
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l----------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~ 181 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA----------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-I 181 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-H
Confidence 788888888888888887763 23356667777777888888888888887776553322221 1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH
Q 003016 353 GLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432 (857)
Q Consensus 353 ~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 432 (857)
..+ ..+...|++++|..+++.+......++...+..+...+.+.|++++|+..|++... . .+.+.
T Consensus 182 ------------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~-~p~~~ 246 (656)
T PRK15174 182 ------------ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA-R-GLDGA 246 (656)
T ss_pred ------------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCCH
Confidence 222 23667788888888888776665444444455556677788888888888888776 2 23345
Q ss_pred HHHHHHHHHHHcCCCHHH----HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDD----CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~----A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
..+..+-..+...|++++ |...|+......+.+...+..+...+.+.|++++|...+++.....
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------------ 314 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH------------ 314 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------
Confidence 566677777788888775 6777777776545567778888888888888888888888877644
Q ss_pred CCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003016 509 PLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 586 (857)
Q Consensus 509 ~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~ 586 (857)
|+ ...+..+..++...|++++|...|+.+... .|+.. .+..+..++...|+.++|...|+...+..-.--...
T Consensus 315 ---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~ 389 (656)
T PRK15174 315 ---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS 389 (656)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence 54 345556667777788888888888877764 45443 233345567778888888888887765421111233
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHhh
Q 003016 587 FTEMLIQAI----VQSNYEKAVALINAMA 611 (857)
Q Consensus 587 ~~~li~~~~----~~g~~~~A~~l~~~M~ 611 (857)
|...+..|. ..+...+......++.
T Consensus 390 ~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 390 FEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 333333333 3355555445555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-14 Score=152.79 Aligned_cols=384 Identities=14% Similarity=0.104 Sum_probs=309.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~ 268 (857)
-..+|..+...+-..|+++.|+.++..+++..++ .+..|..+..+|...|+.+.|...|....+ +.|+.+...
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~----fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~ 187 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK----FIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR 187 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence 4458888999999999999999999999875332 677899999999999999999999988876 457766655
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 269 SVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 269 ~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
+-+. .+-..|++++|...|.+..... +-=.+.|+.|-..+-.+|++..|++-|++.++. .|
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~q----------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQ----------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhC----------------CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 5444 3445789999999998887642 223677999998999999999999999998864 45
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
+-..- |-.|-+.|...+.++.|...+.+.... .|+ ...+..|...|-..|.++-|+..|++..+
T Consensus 250 ~f~dA-----------YiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-- 314 (966)
T KOG4626|consen 250 NFLDA-----------YINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-- 314 (966)
T ss_pred cchHH-----------HhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--
Confidence 53321 367888999999999999999887643 332 44577788889999999999999999876
Q ss_pred CCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 003016 427 HSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505 (857)
Q Consensus 427 g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~ 505 (857)
+.|+ ...|+.|..++-..|++.+|.+.+.....-++....+.+.|-..|...|.+++|..+|....+
T Consensus 315 -~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~----------- 382 (966)
T KOG4626|consen 315 -LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE----------- 382 (966)
T ss_pred -cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-----------
Confidence 3455 467999999999999999999999999886666788899999999999999999999999887
Q ss_pred CCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 506 DGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 506 ~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
+.|.- ..++.|...|-..|++++|...|++.++ +.|+-. .|+.+-..|-..|+++.|.+.+..... +.|.
T Consensus 383 ----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 383 ----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred ----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcH
Confidence 44754 5688899999999999999999999886 888854 888899999999999999999988776 4454
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHh---hhccC
Q 003016 584 -PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESN---EDRIS 634 (857)
Q Consensus 584 -~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~---~~~g~ 634 (857)
...++.|-..|-.+|+..+|+.-+++.+ .++||. ..+..++.+. +.|.|
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHHhcccc
Confidence 4577888889999999999999999965 556665 3555555443 44544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-12 Score=155.77 Aligned_cols=414 Identities=11% Similarity=-0.026 Sum_probs=241.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~ 239 (857)
..-..+-+.|.+++|+..|.+.... .|+...|..+..+|...|+++.|+..+..+++.. +.+..+|..+-.+|.
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3345566789999999999998764 5788889999999999999999999999998753 236788999999999
Q ss_pred HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-ChhhhhhhhhcCCCC---------
Q 003016 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP-SKRIKNMHRKNWDPV--------- 309 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~l~~m~~k~f~~~--------- 309 (857)
..|++++|+.-|.......+. +......++..+........+...+..-.... ....+.-|...|...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999999988777653221 11111222221111111112222211100000 000000010000000
Q ss_pred --CCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHH
Q 003016 310 --LEPDL-VVYNAVLNA---CVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382 (857)
Q Consensus 310 --~~pd~-~t~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~ 382 (857)
..++. ..+..+... ....+++++|.+.|+...+.+ ..|+.... |+.+...|...|++++|..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a-----------~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA-----------LNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH-----------HHHHHHHHHHcCCHHHHHH
Confidence 00000 000000000 112356677777777776654 23333221 3566666677777777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
.|++..+.+.. ....|..+...+...|++++|...|++.... .+.+..++..+...+...|++++|...|+...+..
T Consensus 353 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 353 DLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77776654321 2345666667777777777777777776652 22334566666667777777777777777776644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
+.+...|..+...+.+.|++++|+..|++..... | +...|+.+...+...|++++|...|+...
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---------------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556666667777777777777777777766533 4 34566666667777777777777777766
Q ss_pred HcCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 542 LSGCQLDQT------KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 542 ~~g~~pd~~------t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
...-..+.. .++.....+...|++++|..+++...... +.+...+..+...+.+.|++++|+.+|++..
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 532111110 11111122333577777777777665542 1233456666777777777777777777654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-13 Score=147.44 Aligned_cols=449 Identities=14% Similarity=0.091 Sum_probs=345.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
..|-.+.-+.|++.+|.+.-...-+.. ..+......+-..+.+..+.+...+--...++. ...-..+|+.+.+.+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHHHH
Confidence 445566778899999887655443333 222223333333455555555444433333332 222457899999999
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
-..|++++|+..++.|.+. .| .+..|..+..++...|+.+.|.+.|.+..+ +.|+....
T Consensus 127 kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq-----------------lnP~l~ca 186 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----------------LNPDLYCA 186 (966)
T ss_pred HHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----------------cCcchhhh
Confidence 9999999999999999883 45 478999999999999999999999999887 56877766
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 318 NAVLNAC-VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 318 ~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
.+-+..+ -..|.+.+|..-+.+.++. .|.- .+.|+.|-..+-..|++..|..-|++....+... .
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~f-----------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~ 252 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIET--QPCF-----------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-L 252 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhh--CCce-----------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-h
Confidence 5544443 4478999999988888765 3432 3458999999999999999999999987765321 2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
..|-.|-..|...+.+++|+.-|.+... ..|+ ...+..+-..|-..|.++.|+..+++..+.-+.-...||.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 3577889999999999999999988764 4565 45677777788899999999999999887444447899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~ 553 (857)
+-..|++.+|.+.+.+..... |+. .+.+.|-..+...|.++.|..+|..... +.|.- ..++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~---------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~n 392 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLC---------------PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHN 392 (966)
T ss_pred HHhccchHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhh
Confidence 999999999999999998854 644 5788899999999999999999998876 56664 4889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhh
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNED 631 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~ 631 (857)
.|...|-..|++++|...+++... +.|+ ...|+.|-..|-..|+...|++.+.+.. .+.|.. ...+.|-+.+..
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKD 468 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhc
Confidence 999999999999999999998876 6776 4588888889999999999999999876 466766 578999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHHhccCc
Q 003016 632 RISRDKLEKLLNALCNCNAASSEITV-SNLSRALHALCRSEK 672 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~~~g~~p~~~~~-~~~~~~l~~~~~~~~ 672 (857)
.|++.+|.+-.+...+. .|+.|.. .++...+.-.|....
T Consensus 469 sGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999998888755 4444432 234444444455444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-12 Score=150.08 Aligned_cols=409 Identities=11% Similarity=0.018 Sum_probs=291.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~l 270 (857)
.+...-..+.+.|+++.|...|+..++ ..|+...|..+..+|.+.|++++|+..++...+. .| +...|..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~ 200 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence 345566678888999999999998863 4467788999999999999999999999998873 34 56789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPS 348 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd 348 (857)
..+|...|++++|+.-|......+ ..+......++..+.. ..+........+.. ..|.
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIID----------------GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----------------CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999887765543 1122222222222221 12222222222221 1122
Q ss_pred HHHHHHHHHHHH---------------HhHHHHHHHHH------HHcCCHHHHHHHHHHHhhcC-CCC-CHHHHHHHHHH
Q 003016 349 AATYGLAMESYR---------------RCLLKVLVRAF------WEEGKINEAVAAVRNMEQRG-VVG-TASVYYELACC 405 (857)
Q Consensus 349 ~~t~~~ll~~~~---------------~~~~~~Li~~y------~k~g~~~~A~~lf~~m~~~~-~~~-d~~t~~~lI~~ 405 (857)
.......+..+. ......++..+ ...+++++|.+.|+...+.+ ..| ....|+.+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 111111111100 00000111111 22468999999999988765 223 44568888888
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK 484 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 484 (857)
+...|++++|+..|++... ..|+ ..+|..+...+...|++++|...|+...+..+.+...|..+...|...|++++
T Consensus 341 ~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 2354 55788888889999999999999999987555678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003016 485 AKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 563 (857)
Q Consensus 485 A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G 563 (857)
|...|++..... |+ ...|..+...+...|++++|+..|++.++. .+-+...++.+...+...|
T Consensus 418 A~~~~~kal~l~---------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 418 AGKDYQKSIDLD---------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcC---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc
Confidence 999999998854 64 566777788888999999999999998863 2334678888889999999
Q ss_pred CHHHHHHHHHHHHHCCCC--C---CHH-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHH
Q 003016 564 KCHLLEHAFDSLLEAGEI--P---HPL-FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRD 636 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~--p---~~~-~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e 636 (857)
++++|...|+...+..-. + +.. .++.....+...|++++|..++++.... .|+. ..+..+...+...|+.+
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHH
Confidence 999999999998765211 1 111 1222222333469999999999997643 3444 46888888999999999
Q ss_pred HHHHHHHHHHhCC
Q 003016 637 KLEKLLNALCNCN 649 (857)
Q Consensus 637 ~~~~l~~~m~~~g 649 (857)
+|.+.++...+..
T Consensus 560 eAi~~~e~A~~l~ 572 (615)
T TIGR00990 560 EALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-12 Score=154.58 Aligned_cols=415 Identities=11% Similarity=0.042 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+.....-.+......|+.++|.+++..+... ...+...+..+...+.+.|++++|..+|++..+. -+.+...+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~ 86 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ 86 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 34444455555555566666666666555321 1123445566666666666666666666665442 12234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
..+...+...|++++|+..+++..+.. +.+.. |..+..++...|+.++|...++++.+. .|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~----------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P 147 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA----------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--AP 147 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 555556666666666666666655431 22333 555555555666666666666666554 23
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH------HHHHHHHHHH-----HHCCCH---H
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA------SVYYELACCL-----CNNGRW---Q 413 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~------~t~~~lI~~~-----~~~g~~---~ 413 (857)
+.... +..+...+...|..+.|.+.++.... .|+. .....++..+ ...+++ +
T Consensus 148 ~~~~~-----------~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 148 QTQQY-----------PTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred CCHHH-----------HHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 32221 13344455555666666665554432 1110 0011111111 111223 5
Q ss_pred HHHHHHHHHHhcCCCCCcHH-HH----HHHHHHHHcCCCHHHHHHHHHHHhhCC--CCC-HHHHHHHHHHHHhcCCHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEI-TF----TGLIISSMDGGHIDDCISIFQHMKDHC--EPN-IGTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~-t~----~~ll~a~~~~g~~~~A~~if~~m~~~~--~p~-~~~~~~li~~~~~~g~~~~A 485 (857)
+|+..++.+.......|+.. .+ ...+.++...|+.++|...|+.+.+.- .|+ ...+ +...|...|++++|
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A 291 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHH
Confidence 56666666654212222211 11 111223345566777777777666521 122 2222 35566667777777
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCC--CCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLK--PDEYTYSSMLEASATAHQWEYFEYVYKGMALSG-----------CQLDQ--- 549 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~--pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g-----------~~pd~--- 549 (857)
+.+|+++..... .. .....+..+..++...|++++|..+++.+.... -.|+.
T Consensus 292 ~~~l~~~l~~~p------------~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 292 QSILTELFYHPE------------TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHHHHhhcCC------------CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 777776654320 00 012234445555666677777777766666431 11231
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a 628 (857)
..+..+...+...|+.++|+++++.+... .+-+...+..+...+...|++++|++.+++... ..|+. ..+......
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHH
Confidence 23344555567777888888887777654 223456777777777777888888888777653 34553 344444445
Q ss_pred hhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 629 NEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 629 ~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
....++++.|..+++.+.+. .|+.+.+..+
T Consensus 437 al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 66677777788777777764 4555655555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-11 Score=151.10 Aligned_cols=420 Identities=11% Similarity=0.046 Sum_probs=301.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
.-.+......|..++|+.++....... ..+...+..+..++...|++++|..+++..++.. +.+...+..+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 333455778899999999999988633 4556678999999999999999999999987642 33677788999999
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~ 318 (857)
...|++++|+..+++..+. .+.+.. |..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----------------P~~~~~~~ 154 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----------------PQTQQYPT 154 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHHH
Confidence 9999999999999999874 233455 8889999999999999999999998853 33566667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHH-----HHcCCH---HHHHHHHHHHhhc
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAF-----WEEGKI---NEAVAAVRNMEQR 390 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y-----~k~g~~---~~A~~lf~~m~~~ 390 (857)
.+..++...+..+.|+..++.... .|+.... +... ....++..+ ...+++ ++|+..++.+.+.
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~---l~~~---~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRD---LEAD---AAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHH---HHHH---HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 777888889999999988876653 3432110 0000 002222222 222334 7788889888754
Q ss_pred -CCCCCHH-HH----HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 391 -GVVGTAS-VY----YELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 391 -~~~~d~~-t~----~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
...|+.. .+ ...+..+...|++++|+..|+.+.. .+. .|+. .-..+..+|...|++++|..+|+.+...-+
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 2222221 11 1113455677999999999999988 442 2433 222246789999999999999999876321
Q ss_pred C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH---hHhhhhHHHHHhcCCHHHHHHH
Q 003016 464 P----NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE---YTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 464 p----~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~---~t~~~ll~a~~~~g~~~~a~~l 536 (857)
. ....+..+..++.+.|++++|.++++.+....+..... . +...-.|+. ..+..+...+...|+.++|+.+
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~-~-~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL-Y-GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee-c-CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 24556777778899999999999999998754110000 0 000123442 2345566778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 003016 537 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~ 615 (857)
++++... .+-+...+..+...+...|+.++|++.++...+. .|+ ...+..+...+...|++++|+.+++++.. .
T Consensus 382 l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~ 456 (765)
T PRK10049 382 ARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--R 456 (765)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 9999874 2445668888888899999999999999998874 354 56777777788889999999999999874 3
Q ss_pred ccCHH
Q 003016 616 HITER 620 (857)
Q Consensus 616 ~p~~~ 620 (857)
.|+..
T Consensus 457 ~Pd~~ 461 (765)
T PRK10049 457 EPQDP 461 (765)
T ss_pred CCCCH
Confidence 44443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-10 Score=142.67 Aligned_cols=456 Identities=7% Similarity=-0.045 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...+.+.|.+++|...+++..+.. |+...|..++..+ ++..+|..+++.+++..+. +..++..+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~----n~~~~~~l 148 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA----CDAVPTLR 148 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC----ChhHHHHH
Confidence 4455778888999999999999999988764 6666665555444 8888999999999875332 45566555
Q ss_pred HHH--------HHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHcCCChh------hh
Q 003016 235 LAI--------LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-AVTLGQVGLLKELVKLIERMRQKPSKR------IK 299 (857)
Q Consensus 235 i~~--------y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~~------l~ 299 (857)
... |.+.+....|++ .+.. ...|+..+.... ...|.+.|++++|+.++.++.+.+... +-
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~--lr~~---~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~ 223 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN--DATF---AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWF 223 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH--Hhhh---CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 555 777755555555 2221 223445544444 889999999999999999998886221 22
Q ss_pred hhhhh---------cCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH---------
Q 003016 300 NMHRK---------NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSAATYGLAMESYR--------- 360 (857)
Q Consensus 300 ~m~~k---------~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~~~~--------- 360 (857)
+.|.. ++.+.++-|...+..+...+.+.|+.++|.++++++...-.. |+..++.-.+.-..
T Consensus 224 ~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 224 DVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred HHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 22322 244455678899999999999999999999999998654322 33333221111111
Q ss_pred ----------------------------------------------------------HhHH--------------HHHH
Q 003016 361 ----------------------------------------------------------RCLL--------------KVLV 368 (857)
Q Consensus 361 ----------------------------------------------------------~~~~--------------~~Li 368 (857)
...| --+-
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0000 0000
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--cCCC-----------------------------------------------------
Q 003016 369 RAFWEEGKINEAVAAVRNMEQ--RGVV----------------------------------------------------- 393 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~--~~~~----------------------------------------------------- 393 (857)
-...+.|+..+|..+|+..-. .+..
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 111233444444444443322 0111
Q ss_pred ---------C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 394 ---------G--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 394 ---------~--d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
+ +...|..+..++.. ++.++|+..|.+... ..|+......+..++...|++++|...|+.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1 33344444444444 556666665555443 1244433333344445677777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.|+...+..+...+.+.|++++|...|++..... |+.. .+..+...+...|++++|...+++..
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---------------LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444445566666777777777777777776543 4332 22222333444577788877777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccC-HH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHIT-ER 620 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~-~~ 620 (857)
+ +.|+...+..+...+.+.|+.++|...|+...... +-+...++.+-..+...|++++|+..+++... ..|+ ..
T Consensus 604 ~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~ 678 (987)
T PRK09782 604 N--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPA 678 (987)
T ss_pred H--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 5 44666677777777777888888888887776642 22445666666677777888888887777653 2333 35
Q ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 621 QWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 621 ~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
.+..+-.++...|+.+.|...++...+..
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66667777777788888877777777543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-10 Score=132.51 Aligned_cols=446 Identities=10% Similarity=0.023 Sum_probs=318.4
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
...+.|.+..|+..|++..+.. |+.. ....++..+...|+.++|+..++..+. .........-++...|...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcC
Confidence 4568999999999999998765 5542 333888888899999999999998862 11223444445566888999
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
+++.|.++|+++.+. -+-+...+..++..+...++.++|++.+..+... .|+...+-.++.
T Consensus 117 dyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----------------dp~~~~~l~lay 177 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----------------DPTVQNYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----------------CcchHHHHHHHH
Confidence 999999999999984 2334677778889999999999999999999764 566666644444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH--H
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY--Y 400 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~--~ 400 (857)
.+...++..+|++.++++.+. .|+...+ +..++....+.|-...|.++..+-+.. ..+...-| .
T Consensus 178 L~~~~~~~~~AL~~~ekll~~--~P~n~e~-----------~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~ 243 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRL--APTSEEV-----------LKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLER 243 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHH
Confidence 444566676699999999987 4654443 367788888999998888877764421 11111001 0
Q ss_pred HHHHHHHH---------CCC---HHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHhh-CC
Q 003016 401 ELACCLCN---------NGR---WQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMDGGHIDDCISIFQHMKD-HC 462 (857)
Q Consensus 401 ~lI~~~~~---------~g~---~~~A~~l~~~m~~~~g~~pd~~-----t~~~ll~a~~~~g~~~~A~~if~~m~~-~~ 462 (857)
..+.-..+ ..+ .+.|+.-++.+....+..|... ...-.+-++...|+..++.+.|+.+.. +.
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00111111 122 4556666666665334334322 223445677889999999999999997 43
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+.-..+--++.++|...+++++|..++.+........ ....++......|.-++...+++++|..+++.+.+
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3344577889999999999999999999986543000 00122444457889999999999999999999987
Q ss_pred cCC-----------CCCH--H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 543 SGC-----------QLDQ--T-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 543 ~g~-----------~pd~--~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.-- .||. . .+..++..+.-.|++.+|++.++.+... -+-|......+-+.+...|++.+|+..++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 311 2332 2 3444566688999999999999999764 23478888999999999999999999997
Q ss_pred HhhhCCCccCH-HHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003016 609 AMAYAPFHITE-RQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLS 661 (857)
Q Consensus 609 ~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~ 661 (857)
.... ..|+. .+......+....+++..+..+++.+.+. .|.++....+.
T Consensus 475 ~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 475 AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 7653 35654 45666777778889999999999999866 45666666553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-12 Score=144.06 Aligned_cols=439 Identities=13% Similarity=0.062 Sum_probs=265.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003016 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (857)
Q Consensus 175 ~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 254 (857)
..++..|...|+.||.+||.++|..||..|+++.|- +|..|.-. ..+.+..+++.++.+..+.++.+.|.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k---sLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK---SLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc---cccccchhHHHHHhcccccccccCCC------
Confidence 467889999999999999999999999999999988 88887432 12225566777777777666666555
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHc----CC---------------------------------
Q 003016 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKE---LVKLIERMRQ----KP--------------------------------- 294 (857)
Q Consensus 255 ~~~~gi~pd~~t~~~li~~~~~~g~~~~---A~~l~~~m~~----~g--------------------------------- 294 (857)
.|-..||+.|+.+|.+.|++.. ..+.+..... .|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 2666677777777777776543 1111111111 11
Q ss_pred ----------------------------------ChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 295 ----------------------------------SKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 295 ----------------------------------~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
-..+.+|+++..+ .|+..+|.+++.+-..+|+.+.|..++.+|
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 0013344444443 578888888888888889999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHH---
Q 003016 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML--- 417 (857)
Q Consensus 341 ~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~--- 417 (857)
++.|+..+..-| |-.|+ + .++...+..+...|.+.|+.|+..|+...+..+..+|....+..
T Consensus 231 ke~gfpir~HyF-----------wpLl~-g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq 295 (1088)
T KOG4318|consen 231 KEKGFPIRAHYF-----------WPLLL-G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ 295 (1088)
T ss_pred HHcCCCcccccc-----------hhhhh-c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc
Confidence 888888777766 33333 3 78888888888888888988888888877776666554222211
Q ss_pred --------HHHHHHhc------------------------CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CC
Q 003016 418 --------VVEKIKSL------------------------RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---HC 462 (857)
Q Consensus 418 --------l~~~m~~~------------------------~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~ 462 (857)
++..|... .|+.... +.-+++.-..+.|.-++..++-..|.. ..
T Consensus 296 ~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~-aiws~c~~l~hQgk~e~veqlvg~l~npt~r~ 374 (1088)
T KOG4318|consen 296 LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILE-AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRD 374 (1088)
T ss_pred hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccch-HHHHHHHHHHHcCCCchHHHHHhhhcCCcccc
Confidence 11111110 0000000 001111111224555555555555544 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHcC------------------CCCccccCC-----CCCCCCC----
Q 003016 463 -EPNIGTVNAMLKVYSRNDMFSKAKELFE--ETTRAN------------------SSGYTFLSG-----DGAPLKP---- 512 (857)
Q Consensus 463 -~p~~~~~~~li~~~~~~g~~~~A~~lf~--~M~~~g------------------~~~~~~~~~-----~~~~~~p---- 512 (857)
..++..|..++.-|.+.-+..-...++. +....+ .+....+.+ ......|
T Consensus 375 s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 375 SGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 1234445555555543211111111110 000000 000000000 0000111
Q ss_pred ---CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 003016 513 ---DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFF 587 (857)
Q Consensus 513 ---d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~~~~~ 587 (857)
=...-+.++..|++.-+..+++..-+.....-+ ...|..||+-+.+..+.++|..+.+++... .+..|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 011234455556665555555544333322111 156888999999999999999999988765 455677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC-CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAP-FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~-~~p~-~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+.+.+.+.+...++..++.+|...- ..|+ ..++-.+++.....|..+...++.+.+...|+.
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987632 3333 356677888888999999999999999988877
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-11 Score=124.01 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=201.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
+++..++.+|++--..++|.+++++-.....+.+..+||.+|.+-.- ..+..+..+|+..+. .||.+++|+++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm---~Pnl~TfNalL 280 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM---TPNLFTFNALL 280 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc---CCchHhHHHHH
Confidence 56778888888888889999999999999889999999999988654 344889999988744 48999999999
Q ss_pred HHHHHcCChhHH----HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 236 AILGKAGRPHEA----LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE-LVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 236 ~~y~k~g~~~~A----~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+..++.|+++.| .+++.+|++ .|+.|...+|..+|..+++.++..+ |..++.++.. ++-.|-|.+..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N-------~ltGK~fkp~~ 352 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN-------SLTGKTFKPIT 352 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-------hhccCcccCCC
Confidence 999999988765 567788888 6999999999999999999988744 5555555542 33457777777
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHH--HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG----LKPSAA--TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~--t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+.|...|.+.++.|.+..+.+.|.++..-+.... +.|+.. .| |..+....|+....+.-...|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fY-----------yr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFY-----------YRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999987765321 334322 23 477888888999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 427 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g 427 (857)
+.|.-+-..|+..+...++.+..-.|+++-.-+++.+|.. .|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 9999888888888888899999999999988888888877 44
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-10 Score=135.08 Aligned_cols=208 Identities=12% Similarity=0.045 Sum_probs=133.4
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
...|++++|+..|+...+.. +-+..++..+...|...|+.++|+...+..++.. +.|...+..| ..+ ++.+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld----P~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH----PGDARLERSL-AAI---PVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----cccHHHHHHH-HHh---ccCh
Confidence 34699999999999998875 2346688889999999999999999999998742 2366666655 222 9999
Q ss_pred HHHHHHHHhHHcCCCCCC-HHHHHHHHHH--------HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH
Q 003016 246 EALRIFNLMLEDCNLYPD-IAAYHSVAVT--------LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd-~~t~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t 316 (857)
+|..+++++... .|+ ...+..+... |.+.+...++++ ..... ..|+..+
T Consensus 126 kA~~~ye~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~---------------~~~~~~v 183 (987)
T PRK09782 126 KSVTTVEELLAQ---QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFA---------------ASPEGKT 183 (987)
T ss_pred hHHHHHHHHHHh---CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhC---------------CCCCcHH
Confidence 999999999985 344 4444444444 666644444444 33222 4445554
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCCC
Q 003016 317 YNAV-LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE-EGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 317 ~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k-~g~~~~A~~lf~~m~~~~~~~ 394 (857)
.... ...|.+.|++++|+.++..+.+.+....... ..|-.+|.. .++ +++..+++. .+.-
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~-------------~~L~~ay~q~l~~-~~a~al~~~----~lk~ 245 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAER-------------RQWFDVLLAGQLD-DRLLALQSQ----GIFT 245 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHH-------------HHHHHHHHHhhCH-HHHHHHhch----hccc
Confidence 4444 8899999999999999999999875443321 233334444 233 444444332 1113
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
+...+..+...|.+.|+.++|..++.++
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444555555555555555555554444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-09 Score=125.96 Aligned_cols=454 Identities=11% Similarity=0.091 Sum_probs=310.0
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLM--FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~--p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
..++...+.|-..+-..+.+..++.+...+...... .-...|-.+-++|-..|+++.|...|-...+..... -+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l 343 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---FVL 343 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC---ccc
Confidence 344555566666666677777777777777654311 222346667777777788888887777665432221 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG----LLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+--|..+|.+.|+++.|...|+..... .+-+..|.-.|...|+..+ ..+.|..++......
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~------------ 409 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ------------ 409 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc------------
Confidence 4455677777888888888888777763 2233556666666666654 345555565555443
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR----KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
.+.|...|-.+-..+-+..-+ .++.+|.... ..+-.+..... |.+...+...|++..|.
T Consensus 410 ----~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L------------NNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 410 ----TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL------------NNVASLHFRLGNIEKAL 472 (1018)
T ss_pred ----ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH------------HhHHHHHHHhcChHHHH
Confidence 345666776665555544333 3355554433 33433444444 89999999999999999
Q ss_pred HHHHHHhhc---CCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHcCCCHHHH
Q 003016 382 AAVRNMEQR---GVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDC 451 (857)
Q Consensus 382 ~lf~~m~~~---~~~~d~------~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~A 451 (857)
..|.....+ ...+|. .+-.-+..++-..++.+.|.+.|..+... .|.-+ .|..+..+.-..+...+|
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHH
Confidence 999987655 122222 12223456667778999999999999872 35433 344444444456788899
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhc----
Q 003016 452 ISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA---- 527 (857)
Q Consensus 452 ~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~---- 527 (857)
...+.........+...|+-+-..|.+...+..|.+-|......- ...+|.++..+|-+.|...
T Consensus 550 ~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------------~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------------STKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh------------ccCCchhHHHHhhHHHHHHhccc
Confidence 999999988666778888888889999999999999887776543 1347888877777755443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 528 --------HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 528 --------g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
+..+.|+++|.+.++.. +-|...-|.+-..++..|++++|..+|....+... -...+|-.+-..|...|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 45788999999888742 44666777787788999999999999999988743 233567788899999999
Q ss_pred HHHHHHHHHHhhh-CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 600 YEKAVALINAMAY-APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 600 ~~~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
+..|+++|+.... ..-+-+..++..|-.+.-..|.+.++.+.+.... ...|.++.+.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~--~~~p~~~~v~ 753 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR--HLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCCccchHH
Confidence 9999999999544 3445566788888889999999888887765554 4455566554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-08 Score=121.25 Aligned_cols=419 Identities=9% Similarity=0.041 Sum_probs=294.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~ 239 (857)
.++..+...|..++|+..+++.... -......+..+...+...|+++.|.++++.+++..+ .+..++..++..|.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP----~n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP----TNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHh
Confidence 5556666779999999999988721 123334444456678888999999999999987533 36777888999999
Q ss_pred HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHH
Q 003016 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~ 319 (857)
..++.++|++.+.++... .|+...+-.++..+...++..+|++.++++.... +-+...+..
T Consensus 148 ~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~----------------P~n~e~~~~ 208 (822)
T PRK14574 148 DAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA----------------PTSEEVLKN 208 (822)
T ss_pred hcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC----------------CCCHHHHHH
Confidence 999999999999999874 4776666444444444666667999999998853 446777788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--HhHHHHHHHHHHHcCCH---HHHHHHHHHHhhc-C
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA--MESYR--RCLLKVLVRAFWEEGKI---NEAVAAVRNMEQR-G 391 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--l~~~~--~~~~~~Li~~y~k~g~~---~~A~~lf~~m~~~-~ 391 (857)
+..+..+.|-...|.++..+ .|+.++=... |.... ..+-++.+..-....++ +.|+.-++.+... +
T Consensus 209 ~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 209 HLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 88999999999888876654 2322221110 00000 00001111110112233 4455555554432 2
Q ss_pred CCCC-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----
Q 003016 392 VVGT-A----SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH----- 461 (857)
Q Consensus 392 ~~~d-~----~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~----- 461 (857)
..|. . ...--.+-++...|+..+++..|+.|.. .+.+.-..+--++.++|...++.++|..++..+...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 2232 1 2223457788899999999999999998 676655678899999999999999999999998662
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh-hhHHHHHhcCCHHHHHHHHHH
Q 003016 462 -CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS-SMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 462 -~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~-~ll~a~~~~g~~~~a~~l~~~ 539 (857)
..++......|.-+|...+++++|..+++.+....+..+...........||-..+. .++..+.-.|++.+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233555568899999999999999999999987432111111222233445555443 445667888999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 540 MALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 540 m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+... -+-|......+-+.+...|...+|+..++..... .| +..+.......+...|++.+|..+.+.+..
T Consensus 442 l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 442 LSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9764 3557778889999999999999999999776654 45 456667777888888999999999988653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=114.75 Aligned_cols=400 Identities=14% Similarity=0.121 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-----
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----- 263 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----- 263 (857)
-..+..|..-|.......+|+..++-+++.+.- |+. ..--.+-+.|.+...+..|++.++....+ .|+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf---~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~ 274 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF---PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDM 274 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc---CCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhh
Confidence 334445555566666777888888777665322 221 11122344567777788888887766553 232
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 264 -IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 264 -~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...+.+-..+.+.|.++.|...|+.... ..||..+--.|+-++...|+.++..+.|..|..
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~-----------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCME-----------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHH-----------------hCccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 23455555667788888888888888765 357766655555566667888888888888875
Q ss_pred cCCC------------CCHHHHHHHHHH-----HH--------------------------------------HhHHH--
Q 003016 343 SGLK------------PSAATYGLAMES-----YR--------------------------------------RCLLK-- 365 (857)
Q Consensus 343 ~g~~------------pd~~t~~~ll~~-----~~--------------------------------------~~~~~-- 365 (857)
--.. |+....+-.|.. +. ...+.
T Consensus 338 ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 338 IPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred CCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 4322 222222222110 00 01111
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH-HHHHH-------------------------------
Q 003016 366 ------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL-ACCLC------------------------------- 407 (857)
Q Consensus 366 ------~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l-I~~~~------------------------------- 407 (857)
.-..-|.+.|+++.|.+++.-...++-..-...-|.| .--|.
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 1123466778888888777766655432211111111 11111
Q ss_pred ----HCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 408 ----NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 408 ----~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
.+|++++|.+.|++... .........||.=+ .+-..|++++|+..|-.+..-+..+..+...+...|--..+..
T Consensus 498 n~~f~ngd~dka~~~ykeal~-ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 13455555555555443 11111111122111 2334455555555555544433344445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003016 484 KAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 562 (857)
Q Consensus 484 ~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~ 562 (857)
.|++++.+... +.| |....+-|..-|-+.|+-..|.+.+-+--+ -++.|..|...|-.-|...
T Consensus 576 qaie~~~q~~s---------------lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 576 QAIELLMQANS---------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHhcc---------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhh
Confidence 55555544332 333 334444444555555555555554433222 1233444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc
Q 003016 563 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV-QSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI 633 (857)
Q Consensus 563 G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~-~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g 633 (857)
.-++.+..+|+...- +.|+..-|..||..|.+ .|++.+|+++++.... .+.-|...+.-|++-|+..|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 555555555554432 45555556655555544 3566666666555532 23334444555555554444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-08 Score=116.70 Aligned_cols=437 Identities=12% Similarity=0.054 Sum_probs=305.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG--QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~--t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
+-.+-+.+-..|++++|...|-+-.+.. ++.+ .+..|...+...|+++.+...|+.+.+..+ .+..+.-.|-
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p----~~~etm~iLG 383 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP----NNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc----chHHHHHHHH
Confidence 4445566778899999999987766553 5554 455688899999999999999999987532 2556666677
Q ss_pred HHHHHcC----ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCChhhhhhhhhcCC
Q 003016 236 AILGKAG----RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR----QKPSKRIKNMHRKNWD 307 (857)
Q Consensus 236 ~~y~k~g----~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~~l~~m~~k~f~ 307 (857)
..|+..+ ..+.|..+.....+. .+.|...|-.+...+-...-+.. +..|.... ..+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~------------- 447 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG------------- 447 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC-------------
Confidence 7777665 557777777777763 34577788777777765544433 66665433 333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKPSAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
..+-....|.+-..+...|++..|...|...... ...+|.. +.+.-+ --.|...+-..++.+.|.+.
T Consensus 448 --~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~-------~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 448 --KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL-------KYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred --CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH-------HHHHHHHHHhhhhhhHHHHH
Confidence 4467788999999999999999999999988765 2233332 000000 02344555566789999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 384 VRNMEQRGVVGTASVYYELACCLCNN-------GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 384 f~~m~~~~~~~d~~t~~~lI~~~~~~-------g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
|..+..... ..|.+|.+. +...+|...+.+........|+..+| +-..+.+...+..|..-|.
T Consensus 519 Yk~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 519 YKSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred HHHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHH
Confidence 999887632 235555554 56778888998887744555555544 4445667777777777666
Q ss_pred HHhhC--CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH
Q 003016 457 HMKDH--CEPNIGTVNAMLKVYSR------------NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522 (857)
Q Consensus 457 ~m~~~--~~p~~~~~~~li~~~~~------------~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~ 522 (857)
.+.+. ..+|..+.-+|-..|.+ .+..++|+++|.+..+.. ..|.+.-|.+--
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--------------pkN~yAANGIgi 654 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--------------PKNMYAANGIGI 654 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--------------cchhhhccchhh
Confidence 66552 23566666555554432 346788999999988754 237788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 003016 523 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
.++..|++..|..+|.+..+... -+..+|..+...|..+|++-.|.++|+..... .-.-+..+..+|-.++.+.|.+.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 89999999999999999998653 23446777888899999999999999987665 55567888999999999999999
Q ss_pred HHHHHHHHhhh-CCCccCHHHHHHHHHHh------------------hhccCHHHHHHHHHHHHhCCCC
Q 003016 602 KAVALINAMAY-APFHITERQWTELFESN------------------EDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 602 ~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~------------------~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
+|.+.+..... .+..|. +.|+..+... ..-+..+.+.+++..|...+-.
T Consensus 734 eak~~ll~a~~~~p~~~~-v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTS-VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHhCCccch-HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99988776443 333333 3333322211 1224456778888888877655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-07 Score=101.06 Aligned_cols=424 Identities=12% Similarity=0.094 Sum_probs=338.9
Q ss_pred cCCChHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 167 EREMTAKNWKFVR----IMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 167 ~~~~~~~A~~l~~----~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
.+|.++...+++. ++...|+..+...|..=..+|-..|..-.+..+...++..|.... .-..+|+.-...|.+.+
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee-d~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE-DRKSTWLDDAQSCEKRP 530 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc-hhHhHHhhhHHHHHhcc
Confidence 4555655555544 466779999999999999999999999999999888887765422 23578999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
.++-|+.+|....+ -++.+...|......=-..|..++...+|++.... ++...+.|-....
T Consensus 531 ~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----------------~pkae~lwlM~ak 592 (913)
T KOG0495|consen 531 AIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----------------CPKAEILWLMYAK 592 (913)
T ss_pred hHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCcchhHHHHHHH
Confidence 99999999999887 24456778888888888889999999999999876 4556777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 402 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l 402 (857)
-+-..|+...|+.++....+.. |+..-. |-+-+..-.....++.|+.+|.+... ..|+..+|.--
T Consensus 593 e~w~agdv~~ar~il~~af~~~--pnseei-----------wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN--PNSEEI-----------WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC--CCcHHH-----------HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 7888999999999999988763 443332 57888888999999999999998765 45777778777
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+...--.+..++|+.++++..+ . -|+- -.|..+-+.+-+.++++.|...|..-.+.|+-.+..|-.+...=-+.|.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk--~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALK--S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHH--h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 7777778999999999988876 2 3554 4566677778888999999999988777788888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 560 (857)
+-.|..+++...-.+ | |...|-..|..-.+.|+.+.|..+..+..+. ++.+...|.--|....
T Consensus 735 ~~rAR~ildrarlkN---------------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 735 LVRARSILDRARLKN---------------PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred hhhHHHHHHHHHhcC---------------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 999999999988766 5 7788999999999999999999998887763 4555667877787777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHHHHH
Q 003016 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRDKLE 639 (857)
Q Consensus 561 ~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e~~~ 639 (857)
+.++-......++.. .-|+.+.-++-..+....+++.|.+.|.+.. ...||. .+|..++.-...+|.-+.-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 777755555444433 2345556666677778899999999999976 344554 69999999999999999999
Q ss_pred HHHHHHHhCCC
Q 003016 640 KLLNALCNCNA 650 (857)
Q Consensus 640 ~l~~~m~~~g~ 650 (857)
++++....+..
T Consensus 872 ev~~~c~~~EP 882 (913)
T KOG0495|consen 872 EVLKKCETAEP 882 (913)
T ss_pred HHHHHHhccCC
Confidence 99988886643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=113.30 Aligned_cols=285 Identities=13% Similarity=0.065 Sum_probs=217.6
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|+++.|.+.+....... -.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+.
T Consensus 97 eGd~~~A~k~l~~~~~~~---------------~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~--- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---------------EQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPV--- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---------------cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH---
Confidence 699999998877654432 111 223333344457899999999999999864 45543321
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE---- 432 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---- 432 (857)
.-.....+...|+.+.|...++++.+.+.. +...+..+...|.+.|++++|..++..+.+.....|..
T Consensus 156 -------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 156 -------EITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 023367889999999999999999887633 45678889999999999999999999999833332332
Q ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 433 --ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 433 --~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.+|..++.........+...++++.+.+..+.+......+...+...|+.++|.+++++..+..
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-------------- 293 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-------------- 293 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 2345555555556667788888888877666788999999999999999999999999988744
Q ss_pred CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003016 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM 590 (857)
Q Consensus 511 ~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~l 590 (857)
||... .++.+....++.+.+....+...+. .+-|...+.++-..|.+.|++++|.+.|+...+. .|+...|..+
T Consensus 294 -~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 294 -YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred -CCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 55522 2334444559999999999988864 2334557778888899999999999999999874 6999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 003016 591 LIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 591 i~~~~~~g~~~~A~~l~~~M 610 (857)
...+.+.|+.++|.+++++-
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-09 Score=111.16 Aligned_cols=416 Identities=13% Similarity=0.106 Sum_probs=295.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC-CHHHHHHHHHHH
Q 003016 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQML-KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAIL 238 (857)
Q Consensus 161 l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~-~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~~n~Li~~y 238 (857)
|...|.-++...+|+..|+...+....||...+- .+-..+.+.+.+..|++.+...+..-+..... -..+.|.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3455666778889999999998888888876543 34455667788899999998776553321110 123445555557
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChh---------------------
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR--------------------- 297 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--------------------- 297 (857)
.+.|++++|+.-|+...+. .||..+--.|+-++..-|+-++..+.|..|...++..
T Consensus 287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 7889999999999987764 4888776666666777899999999999998765211
Q ss_pred ----hhhhh--------------hhcCCCCCCCCHHH---HHH------------------HHHHHHhcCChHHHHHHHH
Q 003016 298 ----IKNMH--------------RKNWDPVLEPDLVV---YNA------------------VLNACVPSHQWKGVFWVFK 338 (857)
Q Consensus 298 ----l~~m~--------------~k~f~~~~~pd~~t---~~~------------------li~~~~~~g~~~~A~~l~~ 338 (857)
|.+|- -|+..+.+.||-.. |.. -...+.++|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 22221 34555555555321 111 1123678899999999999
Q ss_pred HHHHcCCCCCHHHHHH--HHHHHH-------Hh----------HHHHH-----HHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 339 QLRKSGLKPSAATYGL--AMESYR-------RC----------LLKVL-----VRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 339 ~m~~~g~~pd~~t~~~--ll~~~~-------~~----------~~~~L-----i~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
-+.+..-+.-...-+. +|.-+- .. -||+- -+.-...|+++.|.+.+.+..+.+...
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 8876543222111111 122111 11 11111 111234589999999999999887776
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
....||.=+ .+-..|++++|++.|-.+.. -+.-+..+...+.+.|-...+...|.+++.+...-++.|....+-|.+
T Consensus 524 ~ealfnigl-t~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGL-TAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 666666433 35678999999999988764 334566677888888988999999999998887778889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
.|-+.|+-..|.+.+-+--+. +..+..|..-|..-|....-++.+.+.|++..- ++|+..-|-.
T Consensus 601 lydqegdksqafq~~ydsyry--------------fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY--------------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc--------------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 999999999999887765442 344777777777888888999999999998764 8999999998
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 555 LLVEA-SRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 555 Ll~~~-~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
++..| -+.|++..|.++++.+-.. ++-|..+..-|++.+...|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88776 5889999999999988654 66677888878887766653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-08 Score=111.48 Aligned_cols=290 Identities=10% Similarity=0.054 Sum_probs=220.4
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH--HHHHHHHhcCC
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL-LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH--SVAVTLGQVGL 279 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L-i~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~--~li~~~~~~g~ 279 (857)
.|+++.|.+......+. .++..++-.+ ..+..+.|+++.|...|.++.+. .|+...+. .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~-----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCC
Confidence 59999999888765432 1123333333 33447899999999999999874 46654333 33568889999
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 359 (857)
++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 169 ~~~Al~~l~~~~~~~----------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--- 228 (398)
T PRK10747 169 NHAARHGVDKLLEVA----------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--- 228 (398)
T ss_pred HHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---
Confidence 999999999998763 446778888999999999999999999999998765332 221000
Q ss_pred HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003016 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 439 (857)
Q Consensus 360 ~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 439 (857)
...|..++.......+.+...++++.+++.- ..+......+...+...|+.++|..++.+..+ . .||.. ..++
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~--l~~l 301 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDER--LVLL 301 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHH--HHHH
Confidence 0012344444455566777778888776542 34667788899999999999999999998876 3 34442 1233
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhh
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 519 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ 519 (857)
.+....++.+++....+...+..+-|...+.++-..|.+.+++++|.+.|+...+. .|+..+|..
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---------------~P~~~~~~~ 366 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---------------RPDAYDYAW 366 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCCHHHHHH
Confidence 44446699999999999998877778888999999999999999999999999984 499999999
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH
Q 003016 520 MLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 520 ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...+...|+.++|.+++++-..
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-06 Score=100.01 Aligned_cols=431 Identities=10% Similarity=0.042 Sum_probs=238.9
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhH
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE 246 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~ 246 (857)
-+|+.++|..++.+..+.. +-+...|..|-..|-..|+.+.+...+-.+-.. .+.|...|-.+-....+.|.++.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHH
Confidence 4599999999999999876 467779999999999999999998877554332 23377899999999999999999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH----HHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN----AVLN 322 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~----~li~ 322 (857)
|.-.|.+.... -+++...+--=+..|-+.|+...|...|.++.+.. .+.|..-+- .++.
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---------------p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---------------PPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---------------CchhHHHHHHHHHHHHH
Confidence 99999998873 23444444445677889999999999999998764 211222222 2344
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---------
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV--------- 392 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~--------- 392 (857)
.+...++-+.|.+.+......+ -..+..++ +.++..|.+...++.|......+..+..
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~------------ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDL------------NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHH------------HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 4555666677777777665522 11122222 5555555555556655555555544111
Q ss_pred ------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHcCCCHHHHH
Q 003016 393 ------------------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 393 ------------------~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~ 452 (857)
.++..+.-. .-|+......+....+..-... ..+.|+ .--|.-+..++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl-~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRL-MICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhH-hhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111 1111121111111112222222 222222 223455555555555555555
Q ss_pred HHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCH
Q 003016 453 SIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQW 530 (857)
Q Consensus 453 ~if~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~ 530 (857)
.+|..+..+ ...+...|--+..+|-..|..++|.+.|+...... |+.. .-.+|-.-+-..|+.
T Consensus 435 ~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~---------------p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 435 RLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA---------------PDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------CCchhhhhhHHHHHHhcCCH
Confidence 555555542 33344555555555555555555555555555422 4322 122223334444555
Q ss_pred HHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Q 003016 531 EYFEYVYKGMA--------LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL-------------------------- 576 (857)
Q Consensus 531 ~~a~~l~~~m~--------~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~-------------------------- 576 (857)
++|.+.+..+. ..+..|+........+.|...|+.++=..+-..|.
T Consensus 500 EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~ 579 (895)
T KOG2076|consen 500 EKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTS 579 (895)
T ss_pred HHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccc
Confidence 55555555432 11223333322333333333343333221111111
Q ss_pred -------------------------------------HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC--
Q 003016 577 -------------------------------------EAGEIPHP--LFFTEMLIQAIVQSNYEKAVALINAMAYAPF-- 615 (857)
Q Consensus 577 -------------------------------------~~gi~p~~--~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~-- 615 (857)
..|+.-+. ..+.-++..+++.+++++|+.+...+.....
T Consensus 580 ~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~ 659 (895)
T KOG2076|consen 580 KRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFF 659 (895)
T ss_pred cccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Confidence 01111111 1234567777888999999999888765432
Q ss_pred ccCH---HHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 616 HITE---RQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 616 ~p~~---~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
.++. ..-...+.++...+++..+...++.|...
T Consensus 660 ~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 660 QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222 22344556677788888888888888754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=123.61 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=168.0
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~ 329 (857)
++-.|.. .|+.||.+||.++|.-||..|+.+.|- +|.-|+... ...+...|+.++.+..+.++
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---------------Lpv~e~vf~~lv~sh~~And 74 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---------------LPVREGVFRGLVASHKEAND 74 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---------------ccccchhHHHHHhccccccc
Confidence 3445555 488888888888888888888888887 888887766 66777888888888888887
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHC
Q 003016 330 WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409 (857)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~ 409 (857)
.+.+. .|...|| ++|..+|...|++.. |+...+ -.-.++..+..+
T Consensus 75 ~Enpk-----------ep~aDty------------t~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~ 119 (1088)
T KOG4318|consen 75 AENPK-----------EPLADTY------------TNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDH 119 (1088)
T ss_pred ccCCC-----------CCchhHH------------HHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhh
Confidence 77665 5666666 788888888888766 332222 123344445555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcC-CHHHHH
Q 003016 410 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRND-MFSKAK 486 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~~~~~~~li~~~~~~g-~~~~A~ 486 (857)
|-......++..+.-..+..||..+.. .-..-.|.++.+.+++..++.. ..|-.+ .+.-+.... .+++-.
T Consensus 120 Gvgs~e~~fl~k~~c~p~~lpda~n~i---lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl 192 (1088)
T KOG4318|consen 120 GVGSPERWFLMKIHCCPHSLPDAENAI---LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLL 192 (1088)
T ss_pred ccCcHHHHHHhhcccCcccchhHHHHH---HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHH
Confidence 655555555544333244555544322 2222345555566666555441 112221 122222222 222222
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 566 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~ 566 (857)
.......+ + |+..+|.+++.+-.-+|+.+.|..++.+|.+.|+..+.+-|-.|+.+ .+...
T Consensus 193 ~~cksl~e-~---------------~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 193 NMCKSLVE-A---------------PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHHhhc-C---------------CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 22222222 2 77777777777777777777777777777777777777766666655 56666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 567 LLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 567 ~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
-+..+.+.|.+.|+.|+..|+...+..+...|.
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 677777777777777777777777776666544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=124.84 Aligned_cols=160 Identities=12% Similarity=0.027 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+..++..+.+.++++++..+++..........+...|..+...+.+.|+.++|.+.++...+..+.|....+.++..+..
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID 192 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444333222223333444444444444444444444444444222234444444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 558 (857)
.|+.+++.+++....... ..|...|..+..+|...|+.++|+..|++..+.. +.|+.+...+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA--------------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADA 257 (280)
T ss_dssp TCHHHHHHHHHHHHHHH---------------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC--------------cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccc
Confidence 444444444444433321 1222334444444444444444444444444321 1233344444444
Q ss_pred HHHcCCHHHHHHHHH
Q 003016 559 ASRAGKCHLLEHAFD 573 (857)
Q Consensus 559 ~~~~G~~~~A~~~~~ 573 (857)
+...|+.++|.++.+
T Consensus 258 l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 258 LEQAGRKDEALRLRR 272 (280)
T ss_dssp HT-------------
T ss_pred ccccccccccccccc
Confidence 444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-07 Score=105.35 Aligned_cols=373 Identities=12% Similarity=0.089 Sum_probs=268.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
.......+...|+.+.|..++.++++..+ .+...|-.|-..|-..|+.+++...+-.... -.+.|..-|-.+-.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~lad 215 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 33333334445999999999999998643 4778899999999999999999988776654 23457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
-..+.|+++.|.-+|.+..+.. +++...+---...|-+.|+...|..-|.+|.+.....|..-+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~----------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN----------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC----------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 9999999999999999998863 556555555667789999999999999999886432222222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 353 GLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 353 ~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
-..+ -..+..|...++-+.|.+.++..... +-..+...++.++..|.+..+++.|......+.. ....+|
T Consensus 280 ~d~i--------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~-r~~e~d 350 (895)
T KOG2076|consen 280 EDLI--------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN-RESEKD 350 (895)
T ss_pred HHHH--------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc-cccCCC
Confidence 1111 34566777778889999998887652 2233445688899999999999999988888766 222333
Q ss_pred HHHH--------------------------HHHHHHHHcCCCHHHHHHHHHHHhh-C--CCCCHHHHHHHHHHHHhcCCH
Q 003016 432 EITF--------------------------TGLIISSMDGGHIDDCISIFQHMKD-H--CEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 432 ~~t~--------------------------~~ll~a~~~~g~~~~A~~if~~m~~-~--~~p~~~~~~~li~~~~~~g~~ 482 (857)
..-+ .-+.-++.+....+....+..-... . ..-+...|.-+.++|...|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 2221 1122223333333333334443433 2 334567888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASR 561 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~ 561 (857)
.+|+.+|..+.... .--+...|--+..+|-..|..+.|.+.|...+. ..|+.. .-..|-..+-+
T Consensus 431 ~~Al~~l~~i~~~~-------------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 431 KEALRLLSPITNRE-------------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHHHhcCc-------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHh
Confidence 99999999998755 333567888899999999999999999999986 456543 44556666889
Q ss_pred cCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 562 AGKCHLLEHAFDSLLE--------AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~--------~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
.|+.++|.+.+..|.. .+..|+...-.-....+...|+.++-++....|.
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999988642 2344555555556677778898888666655554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-08 Score=109.73 Aligned_cols=288 Identities=13% Similarity=0.041 Sum_probs=203.9
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL-VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
...|+++.|.+.+.+..+. .|+. ..+-....+..+.|+.+.|.+.+....+....++....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~- 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE- 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH-
Confidence 3579999999999887654 3443 33444456677889999999999998765433322222
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 433 (857)
-+....+...|+.+.|...++.+.+.... +..++..+...|.+.|++++|..++..+.+ .+..+...
T Consensus 157 -----------~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~ 223 (409)
T TIGR00540 157 -----------IARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEE 223 (409)
T ss_pred -----------HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHH
Confidence 34577888899999999999999988633 456788899999999999999999999998 44433222
Q ss_pred H-------HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 003016 434 T-------FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 506 (857)
Q Consensus 434 t-------~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~ 506 (857)
. +..++..-......+.....+....+..+.+...+..+...+...|+.++|.+++++..+..
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---------- 293 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---------- 293 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----------
Confidence 2 11112111112223333344444333233588999999999999999999999999999855
Q ss_pred CCCCCCCHhHhh-hhHHH--HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003016 507 GAPLKPDEYTYS-SMLEA--SATAHQWEYFEYVYKGMALSGCQLDQ---TKHAWLLVEASRAGKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 507 ~~~~~pd~~t~~-~ll~a--~~~~g~~~~a~~l~~~m~~~g~~pd~---~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi 580 (857)
||..... .++.. ....++.+.+.+.++...+. .|+. ....++-..|.+.|++++|.++|+.......
T Consensus 294 -----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 294 -----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred -----CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 6554210 12232 23347788888888777653 3443 4555777778899999999999995444445
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.|+...+..+...+.+.|+.++|.+++++-
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788888888889999999999999998873
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=125.79 Aligned_cols=259 Identities=13% Similarity=0.134 Sum_probs=109.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.+-..+.+.|++++|+++++......-.|+...| |..+...+...++.+.|...++++...+.. +...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~-----------~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~ 80 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEY-----------WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-----------cccccccccccccccccccccccccccccc-cccc
Confidence 4466678899999999999766555435666666 677777888899999999999999876644 4445
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVY 476 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~ 476 (857)
+..++.. ...+++++|..++....+ . .++...+..++..+...++++++..+++.+.. ....+...|..+...+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~-~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYE-R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccc-c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 7777776 789999999999887655 2 25666778888889999999999999999776 3467888899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~L 555 (857)
.+.|+.++|++.+++..+.. |+ ....+.++..+...|+.+++.+++....+.. +.|+..+..+
T Consensus 157 ~~~G~~~~A~~~~~~al~~~---------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELD---------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 99999999999999999855 75 6677888888888999999888888877654 4555677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 556 LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 556 l~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
..+|...|+.++|..+|+...... +.|+.....+..++...|+.++|..+.++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 888999999999999999887742 336777788888899999999999987765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-06 Score=88.32 Aligned_cols=429 Identities=11% Similarity=0.055 Sum_probs=316.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.+.+..|..+|+.-.... .-+...|...+..=.+...+..|+.+++..+...+. --..|-..+.+=-..|++..|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----VdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHHHHHHHHHHHHHhcccHHH
Confidence 444566777777766554 346667777788888889999999999999865322 224677777777788999999
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 248 ~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
+++|++-.+ ..|+...|++.|..=.+....+.|..+|++..- +.|++.+|--...--.+.
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------ecccHHHHHHHHHHHHhc
Confidence 999998765 479999999999999999999999999999875 789999998888888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 003016 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT-ASVYYELACCL 406 (857)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~ 406 (857)
|+...+..+|....+.- . |...- ...+.+....=.++..++.|.-+|+-..+.=.... ...|.....--
T Consensus 221 g~~~~aR~VyerAie~~-~-~d~~~--------e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFL-G-DDEEA--------EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred CcHHHHHHHHHHHHHHh-h-hHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999887641 1 11111 01124555555567888999999887665422221 22344444433
Q ss_pred HHCCCHH---HHHH-----HHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHH
Q 003016 407 CNNGRWQ---DAML-----VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVNAMLKVY 476 (857)
Q Consensus 407 ~~~g~~~---~A~~-----l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~--~~~~~li~~~ 476 (857)
-+.|+.. +++- -|+.+.+ ..+-|-.+|.-.+..-...|+.+...++|+....+++|-. ..|.-.|-..
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 4456543 3332 2334443 3345666777777777888999999999999998877743 2343333222
Q ss_pred --------HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHh----cCCHHHHHHHHHHHHHc
Q 003016 477 --------SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASAT----AHQWEYFEYVYKGMALS 543 (857)
Q Consensus 477 --------~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~----~g~~~~a~~l~~~m~~~ 543 (857)
....+.+.+.++|....+ +.| ...||.-+--.|++ +.++..|.+++...+
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~---------------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLD---------------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh---------------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 246788999999998887 445 55777766655554 478999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-ccCHHHH
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPF-HITERQW 622 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~-~p~~~~~ 622 (857)
|..|-..+|-..|..=.+.+.+|.+..+++...+-+ +-|..+|......-...|+.+.|..+|+-....|. ..-...|
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 788999999999999899999999999999998853 22556777666555667999999999999877664 3334678
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 623 TELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 623 ~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.+.+.--...|..+.++.+.+.+.+..-.
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 88888778889999999999999977543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-08 Score=109.05 Aligned_cols=291 Identities=11% Similarity=0.034 Sum_probs=193.3
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH--HHHHHHHHHHhcC
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA--AYHSVAVTLGQVG 278 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~--t~~~li~~~~~~g 278 (857)
..|+++.|.+.+....+.. |+ ...+-....++.+.|+++.|...|.+..+. .|+.. ..-.....+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCC
Confidence 3589999999998775532 22 333444456677889999999999998763 25542 3334577788899
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES 358 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 358 (857)
+++.|...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.++.+.......-.
T Consensus 168 ~~~~Al~~l~~l~~~~----------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-- 229 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA----------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-- 229 (409)
T ss_pred CHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH--
Confidence 9999999999998863 3466778889999999999999999999999987543332210000
Q ss_pred HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-
Q 003016 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV---VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT- 434 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t- 434 (857)
..+..++ ..+..+.+...+..+.+... ..+...+..+...+...|+.++|..++++..+. .||...
T Consensus 230 ---~a~~~~l----~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~ 299 (409)
T TIGR00540 230 ---KAEIGLL----DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAI 299 (409)
T ss_pred ---HHHHHHH----HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccc
Confidence 0011112 22222222234443333221 126667888889999999999999999988762 233331
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 435 --FTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 435 --~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.....-.....++.+.+.+.++...+..+-|. ....++-..|.+.|++++|.+.|+...... .
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-------------~ 366 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-------------E 366 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-------------c
Confidence 11111222345677777777777666444444 566778888888888888888888422222 4
Q ss_pred CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 511 ~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.||...+..+...+...|+.++|.+++++..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888878888888888888888888887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-06 Score=91.65 Aligned_cols=362 Identities=12% Similarity=0.045 Sum_probs=260.5
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHcCCChhhhhhhhhcCCCCCCC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER----MRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
+|++..-++.|..+++..++ .++.+...|.+-...=-++|+.+...++..+ +...| +..
T Consensus 415 AlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng---------------v~i 477 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG---------------VEI 477 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc---------------eee
Confidence 44555556666666666665 3555566665555555556666555555443 23333 555
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
|...|-.=-..|-..|..--+..+....+.-|+.-... ..+|+.-...|.+.+.++-|+.+|....+-.
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~----------~~tw~~da~~~~k~~~~~carAVya~alqvf- 546 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR----------KSTWLDDAQSCEKRPAIECARAVYAHALQVF- 546 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh----------HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-
Confidence 56666555555555565555555555555555443222 3457888889999999999999998877654
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
..+...|...+..--.+|..+.-..+|.+... .++.....|......+-..|++..|+.++....+-.+.+...|-+-
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 33566788888888889999999999999886 5566666777777778889999999999999988555688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TK 551 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t 551 (857)
+..-..+..++.|..+|.+....+ |+...|.--+.----.++.++|.+++++.++ .-|+- ..
T Consensus 625 vKle~en~e~eraR~llakar~~s---------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl 687 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSIS---------------GTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL 687 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccC---------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence 999999999999999999988754 8888887666666667899999999988876 34554 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 552 ~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
|..+-..+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..++++-... ..-+...|-..+..-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHH
Confidence 666666678888888888888765442 2223456776666666778999999999886433 23356788888998889
Q ss_pred ccCHHHHHHHHHHHHh
Q 003016 632 RISRDKLEKLLNALCN 647 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~~ 647 (857)
.|+.+.|+.++....+
T Consensus 766 ~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQ 781 (913)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999888766654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-07 Score=96.62 Aligned_cols=322 Identities=13% Similarity=0.063 Sum_probs=224.9
Q ss_pred hhhcccccccccCCCcHHHHHHHHHHHhc------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003016 139 FAKNVEWHPEKRWRSEAEAIRVLVDRLSE------REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSV 212 (857)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l 212 (857)
+.+.|+.....+...-.+.++.+-+.|.+ .+..++|+++|-+|.+.. +-+..+-.+|-+.|-+.|.++.|+++
T Consensus 13 aa~GWymgrrsaqq~~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRi 91 (389)
T COG2956 13 AAYGWYMGRRSAQQDKQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRI 91 (389)
T ss_pred HHHHHHHhhhHHHhhHHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHH
Confidence 33444444333444444445544444332 466789999999999843 22333556677888899999999999
Q ss_pred HHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 213 LDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
|..+.++..-....-..+.-.|-.=|...|-++.|..+|..+.+. | .--......|+..|-...++++|.++-++..+
T Consensus 92 HQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 92 HQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999876522211112345566777889999999999999999873 1 12245677899999999999999999999888
Q ss_pred CCChhhhhhhhhcCCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHH
Q 003016 293 KPSKRIKNMHRKNWDPVLEPDL----VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLV 368 (857)
Q Consensus 293 ~g~~~l~~m~~k~f~~~~~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li 368 (857)
.+ ..+.. ..|.-+-..+....+.+.|..++.+..+...+--..+ -.+-
T Consensus 170 ~~---------------~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs-------------i~lG 221 (389)
T COG2956 170 LG---------------GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS-------------IILG 221 (389)
T ss_pred cC---------------CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh-------------hhhh
Confidence 76 33332 2355555666678899999999999987643322222 3567
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCH
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 448 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 448 (857)
+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+ ....++. -..+-.--....-.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~--~l~l~~lie~~~G~ 298 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TNTGADA--ELMLADLIELQEGI 298 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-ccCCccH--HHHHHHHHHHhhCh
Confidence 78889999999999999999998776667788899999999999999999998876 3333332 22232222333334
Q ss_pred HHHHHHH-HHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 003016 449 DDCISIF-QHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 449 ~~A~~if-~~m~~~~~p~~~~~~~li~~~~~---~g~~~~A~~lf~~M~~~g 496 (857)
+.|.... +.+.++ |+...+..+|+.-.. -|...+.+.+++.|....
T Consensus 299 ~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 299 DAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 4454444 444444 999999999987654 355777788888887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-06 Score=89.81 Aligned_cols=361 Identities=12% Similarity=0.065 Sum_probs=230.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
+..-|.+.+-..-..+-..|....|...|-.++.. -+..|.+-+...--.-+.+.+..+-...+.+ +.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~-----~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-------YPWFWSAWLELSELITDIEILSILVVGLPSD-----MH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-------CCcchHHHHHHHHhhchHHHHHHHHhcCccc-----ch
Confidence 33344443333333455667778888887766542 1234555444433334444433332222110 11
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 265 AA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 265 ~t-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.. =--+..++-.....+++++-.+.....| +.-+...-+-.-.+.-...++++|..+|+++++.
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g---------------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn 291 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVG---------------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN 291 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 11 1123345555567777777777777665 4444433333333445678899999999999887
Q ss_pred CC--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003016 344 GL--KPSAATYGLAMESYRRCLLKVLVRAFWEEGKI---NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 418 (857)
Q Consensus 344 g~--~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~---~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l 418 (857)
.. --|..+|+.+| |.+..+- --|..+++- ....| .|...+.+-|+-.++.++|...
T Consensus 292 DPYRl~dmdlySN~L--------------Yv~~~~skLs~LA~~v~~i---dKyR~--ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 292 DPYRLDDMDLYSNVL--------------YVKNDKSKLSYLAQNVSNI---DKYRP--ETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred CCCcchhHHHHhHHH--------------HHHhhhHHHHHHHHHHHHh---ccCCc--cceeeehhHHHHHHhHHHHHHH
Confidence 32 12566664322 2222211 122222221 11122 2456666777888889999999
Q ss_pred HHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 419 VEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 419 ~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
|+...+ +.|. ...|+.+-.-|....+...|.+-++...+-++.|-..|-.|-.+|.-.++..-|+-.|++...
T Consensus 353 FkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--- 426 (559)
T KOG1155|consen 353 FKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--- 426 (559)
T ss_pred HHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---
Confidence 988876 2333 456777778888889999999999988887788889999999999999999999999998887
Q ss_pred CCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 498 SGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 498 ~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
++| |...|.+|-.+|.+.++.++|+..|......| ..+...+..|...|-+.++.++|..+|..-.
T Consensus 427 ------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 427 ------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred ------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 557 77889999999999999999999999888765 3366788888888999999999998887665
Q ss_pred HC----CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHh
Q 003016 577 EA----GEIPHPLFFTE--MLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 577 ~~----gi~p~~~~~~~--li~~~~~~g~~~~A~~l~~~M 610 (857)
+. |..-+.....+ |-.-+.+.+++++|.......
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 42 44333222221 334455668888876655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-08 Score=110.50 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh-hHHHH
Q 003016 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP-HEALR 249 (857)
Q Consensus 171 ~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~-~~A~~ 249 (857)
..+|...|..... .+.-+......+-++|-..++.++|.++|+.+.+..+. ...+..+|.+.+--+-+.-.+ -.|..
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 3689999998443 33445578888999999999999999999999776443 234778888887655433221 12344
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSH 328 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g 328 (857)
+.+.++ -.+.||.++-++|.-.++.+.|++.|++..+. .| ...+|+.+-.-+....
T Consensus 413 Li~~~~------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----------------dp~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 413 LIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----------------DPRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHhhCC------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----------------CCccchhhhhcCChhhhhH
Confidence 444443 35789999999999999999999999999884 45 7889998888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003016 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408 (857)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~ 408 (857)
.++.|...|+..+ ..|...|+. |--|.-.|.|.++++.|+-.|+...+-+.. +.+....+...+-+
T Consensus 470 e~d~a~~~fr~Al----~~~~rhYnA---------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 470 EFDKAMKSFRKAL----GVDPRHYNA---------WYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQ 535 (638)
T ss_pred HHHhHHHHHHhhh----cCCchhhHH---------HHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHH
Confidence 9999999998876 346666643 677888999999999999999998877644 33445556667788
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 488 (857)
.|+.++|+.+|++..... ..|..+-......+...++.++|.+.++++++-.+.+..++..+...|.+.|+.+.|+.-
T Consensus 536 ~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999987622 234444444555667789999999999999987777788999999999999999999999
Q ss_pred HHHHHHcC
Q 003016 489 FEETTRAN 496 (857)
Q Consensus 489 f~~M~~~g 496 (857)
|.-+.+..
T Consensus 614 f~~A~~ld 621 (638)
T KOG1126|consen 614 FSWALDLD 621 (638)
T ss_pred hHHHhcCC
Confidence 99887744
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=87.86 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~ 526 (857)
||+.+||++|++|++.|++++|.++|++|.+.| +.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-------------~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-------------IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 99999999999999975
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-10 Score=86.54 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh
Q 003016 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326 (857)
Q Consensus 262 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~ 326 (857)
||+++||++|.+|++.|++++|.++|++|.+.| +.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g---------------~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG---------------IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 99999999999999985
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-05 Score=84.15 Aligned_cols=509 Identities=12% Similarity=0.137 Sum_probs=274.9
Q ss_pred cCChhHHHHHhhhhhcccccccccccccchhchHHHHHHHHhhhhhcccccccchhhhhhhcccccccccCCCcHHHHHH
Q 003016 81 VGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRV 160 (857)
Q Consensus 81 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
+.+-|...-+.....+..-+.+.+ +...+..+|+..+.. +.+-|.+....... .-+++++...+.
T Consensus 59 sykiW~~YL~~R~~~vk~~~~T~~-------~~~~vn~c~er~lv~-mHkmpRIwl~Ylq~-------l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 59 SYKIWYDYLKARRAQVKHLCPTDP-------AYESVNNCFERCLVF-MHKMPRIWLDYLQF-------LIKQGLITRTRR 123 (835)
T ss_pred chHHHHHHHHHHHHHhhccCCCCh-------HHHHHHHHHHHHHHH-HhcCCHHHHHHHHH-------HHhcchHHHHHH
Confidence 445566555555555555555655 555566666664421 11112222211111 224455555555
Q ss_pred HHHHHh--------------------cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc
Q 003016 161 LVDRLS--------------------EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220 (857)
Q Consensus 161 l~~~l~--------------------~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~ 220 (857)
.|++-. +.+..+-++.++++-.+ .++..-.-.|.-++..+++++|.+.+..++...
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCch
Confidence 555433 33333444444444432 233345667788889999999999998876442
Q ss_pred C---CCCCCCHHHHHHHHHHHHHcCChhHHHH---HHHHhHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 221 D---KRDLKSRFVYTKLLAILGKAGRPHEALR---IFNLMLEDCNLYPD--IAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 221 ~---~~~~~~~~~~n~Li~~y~k~g~~~~A~~---vf~~m~~~~gi~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
. +....+...|+-+-+..++.-+.-..+. +++.+.. ..+| ...|++|..-|.+.|.++.|..+|++..+
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 1122356778888887777655544433 3444432 3456 35799999999999999999999988765
Q ss_pred CCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----------------cC------ChHHHHHHHHHHHHcCC-----
Q 003016 293 KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----------------SH------QWKGVFWVFKQLRKSGL----- 345 (857)
Q Consensus 293 ~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----------------~g------~~~~A~~l~~~m~~~g~----- 345 (857)
.- ..+.-|+.+.++|++ .+ +++..+.-|+.+...+.
T Consensus 277 ~v-----------------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 277 TV-----------------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hh-----------------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 42 111122222222221 11 11222222333322210
Q ss_pred -----CC-CHHH------------------HHHHHHHHH--------HhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 003016 346 -----KP-SAAT------------------YGLAMESYR--------RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV 393 (857)
Q Consensus 346 -----~p-d~~t------------------~~~ll~~~~--------~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~ 393 (857)
.| ++.+ |+-++.... ...|..+.+.|-..|+++.|+.+|++...-...
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 01 1111 111111111 556788889999999999999999887664433
Q ss_pred CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCC-cH------HHHHHHHHHHHcCCCHHHHHHH
Q 003016 394 GT---ASVYYELACCLCNNGRWQDAMLVVEKIKSLR---------HSKP-LE------ITFTGLIISSMDGGHIDDCISI 454 (857)
Q Consensus 394 ~d---~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---------g~~p-d~------~t~~~ll~a~~~~g~~~~A~~i 454 (857)
-- ..+|..-...=.++.+++.|+.+.+...... +..| .. ..|+..++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 21 3345555555566778888888776654310 1111 11 1233344444457888888888
Q ss_pred HHHHhh-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhc---C
Q 003016 455 FQHMKD-H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATA---H 528 (857)
Q Consensus 455 f~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~---g 528 (857)
++.+.+ . ..|-++.--+| .+-.+..++++.+++++-...- --|++. .|+.-|.-+.+. .
T Consensus 500 YdriidLriaTPqii~NyAm--fLEeh~yfeesFk~YErgI~LF-------------k~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAM--FLEEHKYFEESFKAYERGISLF-------------KWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhHHHHHHHHHHHcCCccC-------------CCccHHHHHHHHHHHHHHHhcCC
Confidence 888877 3 44444332222 2345667888888887654433 235553 566666555443 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H-HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 003016 529 QWEYFEYVYKGMALSGCQLDQTKHAWLLVE-A-SRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 529 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~-~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~ 604 (857)
.++.|..+|++..+ |++|...-+--|+.+ + -+.|....|+.++++... ++++. ...||..|.-....=-+....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 68999999999888 777776544444433 2 355888888999888654 34442 346666665433321122223
Q ss_pred HHHHHhhhCCCccCHHHHHHHHH---HhhhccCHHHHHHHHHHHHh
Q 003016 605 ALINAMAYAPFHITERQWTELFE---SNEDRISRDKLEKLLNALCN 647 (857)
Q Consensus 605 ~l~~~M~~~~~~p~~~~~~~Ll~---a~~~~g~~e~~~~l~~~m~~ 647 (857)
.++++..+. -|+...-...+. --.+.|..+.|+.+...-.+
T Consensus 643 ~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 643 EIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 334443322 344332222222 22455677777777655543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-05 Score=80.84 Aligned_cols=405 Identities=10% Similarity=0.067 Sum_probs=281.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
++..+..|..+++.-... .|-.. .|-..+-.=-..|++..|+++|+.-.. -.|+...|++.|+.=.+-..++
T Consensus 119 knk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred hhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHH
Confidence 344444455555444322 23222 233334444556899999999987653 4689999999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHH
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~ 325 (857)
.|+.++++..- ++|++.+|---..-=-++|....|..+|+.....-++ -.-+...|++...--.
T Consensus 192 raR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-------------d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 192 RARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-------------DEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHH
Confidence 99999999875 5699999999999999999999999999988764200 1112233444433334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHH---HHHHH-----HHHHhhcCCCCCHH
Q 003016 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKIN---EAVAA-----VRNMEQRGVVGTAS 397 (857)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~---~A~~l-----f~~m~~~~~~~d~~ 397 (857)
++..++.|.-+|+..+..= |...+- ..|..+...=-+-|+.. ++.-- ++.+...+ ..|-.
T Consensus 256 ~qkE~ERar~iykyAld~~--pk~rae---------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYD 323 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI--PKGRAE---------ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc--CcccHH---------HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCch
Confidence 5778899999999888753 322211 00233333334445543 33322 23333333 33556
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHH---HcCCCHHHHHHHHHHHhhCCCCCHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-------TFTGLIISS---MDGGHIDDCISIFQHMKDHCEPNIG 467 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~A~~if~~m~~~~~p~~~ 467 (857)
+|-..+..-...|+.+...++|+.... +++|-.. .|.-+=-+| ....+++.+.++|+...+-++....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 677788888888999999999999876 6677321 222221122 3578999999999998886666778
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 468 TVNAMLKVYS----RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 468 ~~~~li~~~~----~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
|+.-+--+|+ ++.++..|.+++..... .-|-..+|..-|.-=.+.+.++.+..+++..+..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---------------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG---------------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---------------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8887777776 56889999999988765 4588899988888888889999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHH
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQW 622 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~ 622 (857)
+ +-|..++......=...|+.+.|..+|....+.+ +......|-+.|+--...|.++.|..+++++++.. +...+|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvW 543 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVW 543 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHH
Confidence 3 2244566655555567799999999999888763 33446788888888888999999999999987543 222355
Q ss_pred HHHH
Q 003016 623 TELF 626 (857)
Q Consensus 623 ~~Ll 626 (857)
.++-
T Consensus 544 isFA 547 (677)
T KOG1915|consen 544 ISFA 547 (677)
T ss_pred HhHH
Confidence 4443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-06 Score=89.93 Aligned_cols=289 Identities=13% Similarity=0.143 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH------HHHHHHHHHHHhc
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI------AAYHSVAVTLGQV 277 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~------~t~~~li~~~~~~ 277 (857)
...++|..+|-.|.+. +..+..+--+|-+.|-+.|..+.|+++-..+.++ ||. ...-.|..-|...
T Consensus 49 ~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 49 NQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred cCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHh
Confidence 4567888888888663 2234556667777888888888888888888775 552 2344556667778
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (857)
|-+|.|.++|..+...| .--....-.|+..|-+..+|++|+++-+++.+.|-.+..+-.
T Consensus 121 Gl~DRAE~~f~~L~de~----------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI----- 179 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG----------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI----- 179 (389)
T ss_pred hhhhHHHHHHHHHhcch----------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----
Confidence 88888888888887654 233445667888888888888888888888777655443321
Q ss_pred HHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 003016 358 SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 437 (857)
Q Consensus 358 ~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 437 (857)
+..|.-|...+....+++.|..++.+..+.+...... --.+-..+...|+++.|++.++...+ .+..--..+...
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-si~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~ 254 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-SIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEM 254 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-hhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 1124556666666777888888887776655332111 22345566777888888888887776 332223345667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh
Q 003016 438 LIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517 (857)
Q Consensus 438 ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~ 517 (857)
|..+|.+.|+.+++...+..+.+. .++...-..|-..-....-.+.|.....+-... +|+...+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---------------~Pt~~gf 318 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---------------KPTMRGF 318 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---------------CCcHHHH
Confidence 777777777777777777776651 123333333333333334445555555555443 3777777
Q ss_pred hhhHHHHHhc---CCHHHHHHHHHHHHH
Q 003016 518 SSMLEASATA---HQWEYFEYVYKGMAL 542 (857)
Q Consensus 518 ~~ll~a~~~~---g~~~~a~~l~~~m~~ 542 (857)
..+|..-..- |...+-+.+++.|+.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHH
Confidence 7766643332 345555555555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-06 Score=90.36 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=228.7
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++..|.++..+-.+.+ .. -...|..-..+.-+.|+.+.+-.++.+..+.--.++...+
T Consensus 97 eG~~~qAEkl~~rnae~~---------------e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~---- 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---------------EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE---- 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---------------cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH----
Confidence 599999999999977765 23 3445666667777899999999999999876445555554
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE---- 432 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---- 432 (857)
-+........|+.+.|..-.++..+.+..+ .........+|.+.|++.....+...|.+ .+.--|.
T Consensus 157 --------ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~ 226 (400)
T COG3071 157 --------LTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAAR 226 (400)
T ss_pred --------HHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHH
Confidence 667778889999999999999988877554 44588899999999999999999999998 6765553
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 433 ---ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 433 ---~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
.+|..+++-+...+..+.-...++..+.....++..-.+++.-+.++|+.++|.++..+..+.+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------------- 293 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------------- 293 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------------
Confidence 4689999999999988888899999988777788888899999999999999999999998877
Q ss_pred CCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 510 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
..|+. ..+-.+.+.++.+.-++..++-.+. .+-++-.+.+|-..|.+.+.+.+|..+|+...+ ..|+..+|+-
T Consensus 294 ~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~ 366 (400)
T COG3071 294 WDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAE 366 (400)
T ss_pred cChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHH
Confidence 44542 2234556667777766666655542 223346778888889999999999999996665 5789999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+-.++.+.|+.++|.+..++-.
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999988743
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-05 Score=84.21 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=224.7
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~ 282 (857)
.|+|.+|.++...--+. +.. ....|..-..+--+.|+.+.|-+.+.+..+. .-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~---~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH---GEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhc---Ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchh
Confidence 48999999998775433 211 3445555556667789999999999999874 123556677777888899999999
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
|..-+++....+ +.+.........+|.+.|++.....++..|.+.|+-.|...- -+-..
T Consensus 172 A~~~v~~ll~~~----------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----~le~~ 230 (400)
T COG3071 172 ARENVDQLLEMT----------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----RLEQQ 230 (400)
T ss_pred HHHHHHHHHHhC----------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----HHHHH
Confidence 999999988764 557778899999999999999999999999999976665432 11123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
+|+.+++-....+..+.-...++..+++ ..-+...-.+++.-+.+.|+.++|.++..+..+ .+..|. -..+-.+
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~----L~~~~~~ 304 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR----LCRLIPR 304 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh----HHHHHhh
Confidence 3567776666666666655666666543 222334466778889999999999999998888 666666 2223345
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~ 522 (857)
.+.++.+.-.+..+.-.+..+-+...+.+|-..|.+++.|.+|...|+...+ ..|+..+|+-+-.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---------------~~~s~~~~~~la~ 369 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK---------------LRPSASDYAELAD 369 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---------------cCCChhhHHHHHH
Confidence 6677777777766666664555668899999999999999999999998877 4599999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003016 523 ASATAHQWEYFEYVYKGMALSGCQLD 548 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~g~~pd 548 (857)
++...|+.++|.+++++....-.+|+
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999999999988765444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-05 Score=83.46 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=238.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.|.+.+-..--.+-+.|....|...|...... -+.-|.+-+....-..+.+.+..+. ..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-----~P~~W~AWleL~~lit~~e~~~~l~----~~------------ 220 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-----YPWFWSAWLELSELITDIEILSILV----VG------------ 220 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-----CCcchHHHHHHHHhhchHHHHHHHH----hc------------
Confidence 35544444444555677888888888777652 2233333332222222222222211 11
Q ss_pred CCCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 306 WDPVLEPDLVVYN--AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 306 f~~~~~pd~~t~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
...|...+. -+..++....+.+++.+=...+...|+.-+...- +-...++-...++++|+.+
T Consensus 221 ----l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~------------~~~A~~~y~~rDfD~a~s~ 284 (559)
T KOG1155|consen 221 ----LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIK------------TQIAAASYNQRDFDQAESV 284 (559)
T ss_pred ----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHH------------HHHHHHHhhhhhHHHHHHH
Confidence 122211111 2344555666788888888888877765554432 3333344567899999999
Q ss_pred HHHHhhcCC--CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003016 384 VRNMEQRGV--VGTASVYYELACCLCNNGRWQD---AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 458 (857)
Q Consensus 384 f~~m~~~~~--~~d~~t~~~lI~~~~~~g~~~~---A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m 458 (857)
|+++.+.+. .-|..+|+-++ |.++.+-.- |..++.- ...+| .|...+-+-|+-.++.++|...|+..
T Consensus 285 Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~~i----dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 285 FEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVSNI----DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred HHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHHHh----ccCCc--cceeeehhHHHHHHhHHHHHHHHHHH
Confidence 999988753 23566777665 344433222 2222211 23344 46777778888899999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 459 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 459 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+--+.....|+.|-+-|....+...|.+-++...+-+ +.|-..|-.+-++|...+...-|+-.|+
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------------p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------------PRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------------chhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 88555667899999999999999999999999998854 2388899999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----hC
Q 003016 539 GMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA----YA 613 (857)
Q Consensus 539 ~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~----~~ 613 (857)
+... ++| |+..+.+|-.+|.+.++.++|++.|......|-. +...+..|-..+-+.++..+|...|.+-. ..
T Consensus 423 kA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 423 KALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred HHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 9886 555 5779999999999999999999999998886532 55788889999999999999999887743 34
Q ss_pred CCccCHHHHHHHH--HHhhhccCHHHHHHHH
Q 003016 614 PFHITERQWTELF--ESNEDRISRDKLEKLL 642 (857)
Q Consensus 614 ~~~p~~~~~~~Ll--~a~~~~g~~e~~~~l~ 642 (857)
|..-+......++ .-..+.+++++|....
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 5444433333322 3344556666655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-07 Score=93.71 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...+..+...|...|++++|...|++.... .+.+...+..+...|...|++++|.+.+++.....
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 456666777777777777777777777652 12345666777777777777777777777776542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.+...+..+...+...|++++|.+.+....+....|..... +..+...|...|++++|...|++.
T Consensus 96 ---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 96 ---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS-----------LENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred ---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH-----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334556666666777777777777777777654222222111 244555666667777777777666
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
.+.... +...|..+...+...|++++|...+++.... ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 162 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 162 LQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554322 2344556666666666666666666666552 22233344444455555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-07 Score=103.73 Aligned_cols=281 Identities=12% Similarity=0.086 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL-VVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPSAATYGLA 355 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~l 355 (857)
+..+|..+|..... ..+|. ....-+-.+|...+++++|..+|+.+++.. ..-+..+|+++
T Consensus 334 ~~~~A~~~~~klp~-----------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-----------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHhhHH-----------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 34677788877444 33443 444557788999999999999999998753 12255566433
Q ss_pred HHHHHHhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHH
Q 003016 356 MESYRRCLLKVLVRAFWEEG-KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEI 433 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g-~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~ 433 (857)
|-..- +.- ----|..+.+.++ -...+|-++..+|.-+++.+.|++.|++..+ +.| ..+
T Consensus 397 LWHLq------------~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faY 456 (638)
T KOG1126|consen 397 LWHLQ------------DEVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAY 456 (638)
T ss_pred HHHHH------------hhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccch
Confidence 32111 100 0011222222222 2345799999999999999999999988765 455 677
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
+|+.+-.-+.....+|.|...|+....-.+.+-..|.-|...|.+.++++.|+-.|++...-+ |
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---------------P~ 521 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---------------PS 521 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---------------cc
Confidence 888888888888999999999998887222333444456778899999999999999988744 6
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEML 591 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li 591 (857)
+.+....+...+-+.|+.++|++++++.....-. |+..-......+...+++++|...++++++ +.|+ ...|..+.
T Consensus 522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llg 598 (638)
T KOG1126|consen 522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLG 598 (638)
T ss_pred chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 5556666677778889999999999998864322 333333344445667899999999999987 4565 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC
Q 003016 592 IQAIVQSNYEKAVALINAMAYAP 614 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~ 614 (857)
..|.+.|+.+.|+.-|--|....
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHccchHHHHhhHHHhcCC
Confidence 78888899999998888776443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-07 Score=91.75 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...|...|++++|...+++.... .+.+...+..+...|...|++++|...++...+..+.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 445667777788888888888888877652 223345666677777777888888888777766444556677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|...|++++|.+.|.+..... ..| ....+..+...+...|++++|...+.+..... +.+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 174 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLE 174 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHH
Confidence 778888888888887776532 112 23445556666677777777777777766532 223445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+...+...|++++|..+++...+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666677777777777777776665 23345555566666666777777777766653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=102.58 Aligned_cols=266 Identities=10% Similarity=-0.018 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHH
Q 003016 188 FTEGQMLKLLKGLGD-----KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---------AGRPHEALRIFNL 253 (857)
Q Consensus 188 p~~~t~~~ll~a~~~-----~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k---------~g~~~~A~~vf~~ 253 (857)
.+...|...+.+-.. .++++.|...|+..++..+ .+...|..+..+|.. .+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555566555322 2457899999999987532 256667666655542 2447899999999
Q ss_pred hHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003016 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGV 333 (857)
Q Consensus 254 m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A 333 (857)
..+. -+-+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 330 Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 330 ATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS----------------PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8873 23367888888889999999999999999998753 33567788888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
...+++..+.. |+...+ +..+...+...|++++|...+++.......-+...+..+..+|...|+.+
T Consensus 392 i~~~~~Al~l~--P~~~~~-----------~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 392 LQTINECLKLD--PTRAAA-----------GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHhcC--CCChhh-----------HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 99999998864 442211 02334456668999999999999876543324445777888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFE 490 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~~~~~~~li~~~~~~g~~~~A~~lf~ 490 (857)
+|...+.++.. ..|+..+ .+.+...|+..| +.|...++.+.+. ..+.-..+ +-..|+-.|+-+.+..+ +
T Consensus 459 eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 459 LARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred HHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-H
Confidence 99999988765 2444443 455556667777 5888888877662 23333333 33445566776666666 8
Q ss_pred HHHHcC
Q 003016 491 ETTRAN 496 (857)
Q Consensus 491 ~M~~~g 496 (857)
++.+.+
T Consensus 531 ~~~~~~ 536 (553)
T PRK12370 531 KFKNED 536 (553)
T ss_pred Hhhccc
Confidence 887766
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-05 Score=83.56 Aligned_cols=407 Identities=10% Similarity=0.011 Sum_probs=235.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
+.+-+++.+++|+++|.+-... .|| +.-|.....+|...|+|+...+--...++..++ -+-+++.=.+++-..
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~----Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD----YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH----HHHHHHHHHHHHHhh
Confidence 3455788999999999998875 588 777888888899999999999888877664221 234455555566666
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HH-HHcCC-----ChhhhhhhhhcCC
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI--------ER-MRQKP-----SKRIKNMHRKNWD 307 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~--------~~-m~~~g-----~~~l~~m~~k~f~ 307 (857)
|++++|+.=. |-.+++.++....-.--+.+++ .+ |...+ +...+.-|...|.
T Consensus 197 g~~~eal~D~--------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 197 GKFDEALFDV--------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred ccHHHHHHhh--------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 7766664322 2233333333322222222222 11 21111 1222333333333
Q ss_pred CCCCCC-----HHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 308 PVLEPD-----LVVYNAVLNACVP--SH---QWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 308 ~~~~pd-----~~t~~~li~~~~~--~g---~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
..+.|. ..+...+..++.. .+ .+..|...+.+-.... ..++.-+...-+.-+ +.+...--..+.-+|+
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~-A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM-AEALLLRGTFHFLKGD 341 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH-HHHHHHhhhhhhhcCC
Confidence 222211 0111122222111 11 2222222222211100 011110000000000 0000111223445688
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
.-.|..-|+.....+..++.. |--+...|.+..+.++....|....+...- |..+|-.--+++.-.+++++|..=|+
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred chhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766554432 666777888888888888888888763333 33455555555566678888888888
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHH
Q 003016 457 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 457 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l 536 (857)
....--+-++..|--+--+.-|.+.+++++..|++..+.- .--...|+.....+...++++.|.+.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------------P~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------------PNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 8877444456666666666678888999999998888764 22345677777788888889999988
Q ss_pred HHHHHHc-----CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 537 YKGMALS-----GCQ--LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 537 ~~~m~~~-----g~~--pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
|+..++. ++. +.+.+.-+++..-.+ ++++.|..+++...+. .| ....|-+|-..-.+.|+.++|+++|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8887753 111 112333344433333 7888888888887764 23 34677888888888899999999888
Q ss_pred Hh
Q 003016 609 AM 610 (857)
Q Consensus 609 ~M 610 (857)
+-
T Consensus 562 ks 563 (606)
T KOG0547|consen 562 KS 563 (606)
T ss_pred HH
Confidence 75
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-06 Score=100.59 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHH-----cCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHH
Q 003016 226 KSRFVYTKLLAILGK-----AGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLG---------QVGLLKELVKLIERM 290 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k-----~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~---------~~g~~~~A~~l~~~m 290 (857)
.+...|...+.+-.. .+..+.|...|++..+. .|+ ...|..+..+|. ..+++++|...+++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 355556565555322 13467899999998873 464 455655555443 224478999999998
Q ss_pred HcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 003016 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370 (857)
Q Consensus 291 ~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~ 370 (857)
.+.. +-+...|..+-..+...|++++|...|++..+.. |+.... +..+...
T Consensus 331 l~ld----------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a-----------~~~lg~~ 381 (553)
T PRK12370 331 TELD----------------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADI-----------KYYYGWN 381 (553)
T ss_pred HhcC----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH-----------HHHHHHH
Confidence 8753 3467778888778888999999999999988763 554332 3667788
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHH
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHID 449 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~ 449 (857)
|...|+.++|...+++..+.+.... ..+..+...+...|++++|...+++... . ..|+ ...+..+-.++...|+.+
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~-~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRA-AAGITKLWITYYHTGIDDAIRLGDELRS-Q-HLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhccCHHHHHHHHHHHHH-h-ccccCHHHHHHHHHHHHhCCCHH
Confidence 8888999999999998877664422 2233344456667888888888888765 2 2243 334555666677888888
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
+|...+..+....+.+...++.+...|++.| ++|...++.+.+.
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8888887776543344555666666677777 4777767666553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-05 Score=89.88 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAY-HSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+...|++++|++.+..-... .+|..+| ......+.+.|+.++|..+|..+...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR 67 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777777766654432 2444333 33445566667777777777776664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-05 Score=88.18 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=200.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY-NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
...+...|++++|++.+..-.. ..+|..+| ......+.+.|+.++|..++..+++.+ |+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-----------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn 71 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-----------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDN 71 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-----------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc
Confidence 3456788999999999987654 34565554 455666889999999999999999874 788
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEE-----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-DAMLVVEKIK 423 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~-----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~-~A~~l~~~m~ 423 (857)
..| |..|..+..-. ...+....+++++...-...+..-.-.| .+.....+. .+...+..+.
T Consensus 72 ~~Y-----------y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 72 YDY-----------YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHH-----------HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHH
Confidence 887 56666665322 3577888889988766533332222211 122212232 3344455555
Q ss_pred hcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---------------CCCCHHHH--HHHHHHHHhcCCHHHHH
Q 003016 424 SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---------------CEPNIGTV--NAMLKVYSRNDMFSKAK 486 (857)
Q Consensus 424 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---------------~~p~~~~~--~~li~~~~~~g~~~~A~ 486 (857)
. .|+++ +|+.|-..|......+-..+++...... -.|....| .-+-..|...|++++|+
T Consensus 139 ~-KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 139 R-KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred h-cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5 56553 5666666677666666666666665431 13444444 56677888999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~ 565 (857)
+++++..... |+. ..|..-...+-+.|++++|.+..+....... -|...-+-....+.++|++
T Consensus 215 ~~Id~aI~ht---------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 215 EYIDKAIEHT---------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhcC---------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCH
Confidence 9999998854 753 4666677788899999999999999887542 3666777777788999999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHH--HHHHHHHHcCCHHHHHHHHHHhh
Q 003016 566 HLLEHAFDSLLEAGEIPHP------LFFT--EMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 566 ~~A~~~~~~m~~~gi~p~~------~~~~--~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
++|.+++......+..|-. ..|- ..-.+|.+.|++..|+..|....
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999998877654421 1332 33557888999999988877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0013 Score=73.96 Aligned_cols=435 Identities=12% Similarity=0.092 Sum_probs=236.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.+.+...+++.+.... +.+-...|+...--.+...|+-++|......-++ ++..+.+.|..+--.+-...++++|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHHHH
Confidence 4555566666666555 2222222333222234556777777776655433 4445667777776666666777777
Q ss_pred HHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh
Q 003016 248 LRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326 (857)
Q Consensus 248 ~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~ 326 (857)
++.|..... +.| |...|--+--.-++.|+++.......+..+. .......|..+..++.-
T Consensus 95 iKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 95 IKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------RPSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------hhhhHHHHHHHHHHHHH
Confidence 777777665 234 3455555555556667777666666666553 23355667777777777
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003016 327 SHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~ 405 (857)
.|+...|..+.++..+.. -.|+...|.-.... ---.....+.|..+.|.+.+..-... ++-....--+....
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~------Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELL------LYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH------HHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHH
Confidence 777777777777776654 24555554211100 01112234556666666655443322 11111112233445
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-cC-CCHHHHHHHHHHHhhCC----CC---------------
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM-DG-GHIDDCISIFQHMKDHC----EP--------------- 464 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~-~~-g~~~~A~~if~~m~~~~----~p--------------- 464 (857)
+.+.+++++|..++..+.. ..||..-|.-.+..+. +. +..+....+|....+.. .|
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~---rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLE---RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHhhHHhHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 5666777777777766655 1355554443333222 22 22222224443333210 00
Q ss_pred -------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC--CCCCCCCCCHhHhh--hhHHHHHhc
Q 003016 465 -------------NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS--GDGAPLKPDEYTYS--SMLEASATA 527 (857)
Q Consensus 465 -------------~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~--~~~~~~~pd~~t~~--~ll~a~~~~ 527 (857)
-+.++..+...|-.-...+--.++.-.+.. +.++-..+. ..+..-.|....|+ .+...+-+.
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~-~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH-SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh-hcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 011222233333222211111111112211 100000111 11112356666555 466778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
|+++.|+...+..+. ..|+.+ .|..=...+.+.|.+++|..++++..+.+ .||...-+--..-..++++.++|.++
T Consensus 385 g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 999999999998874 567754 55555577899999999999999988764 35555544555667788999999999
Q ss_pred HHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHH
Q 003016 607 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNA 644 (857)
Q Consensus 607 ~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~ 644 (857)
....-..|. ...+.|-..-+.|-.++.++...++
T Consensus 462 ~skFTr~~~----~~~~~L~~mqcmWf~~E~g~ay~r~ 495 (700)
T KOG1156|consen 462 LSKFTREGF----GAVNNLAEMQCMWFQLEDGEAYLRQ 495 (700)
T ss_pred HHHhhhccc----chhhhHHHhhhHHHhHhhhHHHHHH
Confidence 988877775 3444455555566666666555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=90.89 Aligned_cols=252 Identities=14% Similarity=0.132 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCC---CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCC
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR---DLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLY 261 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~ 261 (857)
.++..+...|...|+++.|..++++.++.-.+. ..|.+ ...+.+-..|...+++++|..+|.++..- +...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 366778899999999999999999987652111 12222 23444667888999999999999988652 1122
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHH
Q 003016 262 PD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV-YNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 262 pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t-~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
|. ..+++.|..+|.+.|++++|..++++... .+.++. ....|.+.+ ++.+...|+..+.+++|..++..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 32 45788888899999999999888877643 222211 113444443 55677778999999999999987
Q ss_pred HHHc---CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHC
Q 003016 340 LRKS---GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-------VVGTASVYYELACCLCNN 409 (857)
Q Consensus 340 m~~~---g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-------~~~d~~t~~~lI~~~~~~ 409 (857)
..+. -+.++.+.. ..+++.|-..|-+.|++++|+++|++...+. ..-....++.|...|.+.
T Consensus 351 al~i~~~~~g~~~~~~--------a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNL--------AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHhhccccchHH--------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 7542 233343221 2335889999999999999999998765431 112234466777777888
Q ss_pred CCHHHHHHHHHHHHhc---CC-CCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 410 GRWQDAMLVVEKIKSL---RH-SKPL-EITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~---~g-~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
++.++|..+|.+-... .| ..|+ ..+|..|...|...|+++.|.++.+...
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888777777654320 11 1122 2345555555555555555555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-06 Score=92.60 Aligned_cols=246 Identities=16% Similarity=0.134 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHc----CC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhh
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLED----CN-LYPDIAAY-HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~g-i~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~ 302 (857)
.+...|..+|...|+++.|..+|....+. .| ..|.+.+- +.+...|...+++++|..+|+++... +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------~ 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------R 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------H
Confidence 55556999999999999999999887652 12 13444433 34667888999999999999998753 3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
..+|....+.-..+++.|-..|.+.|++++|...++...+- | ..|.+.+. .+.+...|+..+.
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-----------l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-----------LSELAAILQSMNE 340 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-----------HHHHHHHHHHhcc
Confidence 55555555556677888888999999999999888877532 2 22333333 4788889999999
Q ss_pred HHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCCc-HHHHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQR-------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKPL-EITFTGLIISSM 443 (857)
Q Consensus 377 ~~~A~~lf~~m~~~-------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~pd-~~t~~~ll~a~~ 443 (857)
+++|..+++...+. ..+.-..+++.|...|.+.|++++|.++|++..... +..+. ...++.|-..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 99999998865321 112235679999999999999999999999876521 11222 345788889999
Q ss_pred cCCCHHHHHHHHHHHhh-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKD-----H-CEPN-IGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
+.+..++|.++|.+... | ..|+ ..+|..|...|.+.|+++.|.++-+...
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999887543 2 3334 5789999999999999999999988765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0013 Score=73.71 Aligned_cols=274 Identities=12% Similarity=0.088 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..|...+..+...|++..-+..|+..+..-+. .....+|.-.+......|-++-+.+++++-.+ -++..-+--
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv--tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPV--TQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEY 175 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch--HhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHH
Confidence 35666677778889999999999988764321 12346899999999999999999999999987 456667888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG---VFWVFKQLRKSGLKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p 347 (857)
|.-++..+++++|.+.+........+ .....+.+...|+-+-...++.-+.-. +..+++.+.. .-+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f---------~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rft 244 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEF---------VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFT 244 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhh---------hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCc
Confidence 99999999999999999887654300 001134456667766665555443332 2233333332 345
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH--------------
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-------------- 413 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~-------------- 413 (857)
|..-+ .|++|.+-|.+.|.++.|..+|++-.+.- .+..-++.+.++|++-....
T Consensus 245 Dq~g~----------Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 245 DQLGF----------LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHH----------HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 65544 58999999999999999999998866542 22223555555555432211
Q ss_pred --------HHHHHHHHHHhcCCCC----------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC------HHHH
Q 003016 414 --------DAMLVVEKIKSLRHSK----------PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN------IGTV 469 (857)
Q Consensus 414 --------~A~~l~~~m~~~~g~~----------pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~------~~~~ 469 (857)
-.+.-|+.+.....+- -++.+|..-+. ...|+..+-...+.+..+.+.|- ...|
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHH
Confidence 1122222222211000 01111111111 12456666677777766643332 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+.+.|-.+|+++.|..+|++....+
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 888888888888888888888876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00011 Score=76.26 Aligned_cols=418 Identities=10% Similarity=0.083 Sum_probs=196.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG-LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a-~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
+.+..+.++..|..+++--...+- -.....+..|.- +-..|++++|..++..+... ..++..++-.|.-.+.-.
T Consensus 30 edfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHH
Confidence 444555666666666665443331 122234444433 34568888888888776542 223444555555555555
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---------------hhhhhhhhhcC
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS---------------KRIKNMHRKNW 306 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------~~l~~m~~k~f 306 (857)
|.+.+|..+-...++ ++..-..|+..-.+.++-++...+.+.+...-. ...++.|.++.
T Consensus 105 g~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665444322 122222222222233333333332222221100 00122222222
Q ss_pred CCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------HhHHHH-------------
Q 003016 307 DPVLEPDLVVYNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYR------RCLLKV------------- 366 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~------~~~~~~------------- 366 (857)
. -.|+-...|.-+.. |.+..-++-+.++++--.+. -||... ..=+.+|. ..+-..
T Consensus 179 ~--dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSti-A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 179 Q--DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTI-AKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred h--cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHH-HHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 1 24555566654444 56677777777777766654 344322 22222332 000000
Q ss_pred -HHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-----HHH
Q 003016 367 -LVRAFWEE-----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-----ITF 435 (857)
Q Consensus 367 -Li~~y~k~-----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~ 435 (857)
.+.-.++. .+-+.|++++-.+.+ +.|.+ --.+|--|.+.++.++|..+.+++ ....|-. +++
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA--RLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVF 326 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh--hhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHH
Confidence 11111111 111233333322211 12222 222444566777777777766554 3344543 345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKD-HCEPN-IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 513 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd 513 (857)
.++-+-......+.-|.+.|+-.-. +..-| +.--.+|.+.+.-.-++++.+-.++.+..-- ..-|
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-------------~NdD 393 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-------------TNDD 393 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCcc
Confidence 5555555555566666666665544 22222 2223445555555556667666666665543 2233
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL-VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM-L 591 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll-~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~l-i 591 (857)
...| .+..|.+..|++.+|+++|-.+....+ -|..+|-+++ .+|.++++.+.|+.++-.+.. ..+..+.-.+ .
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIA 468 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIA 468 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHH
Confidence 3333 345666667777777777755443222 2344554433 445677777777666544422 1222222222 3
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCccCHHHHH
Q 003016 592 IQAIVQSNYEKAVALINAMAYAPFHITERQWT 623 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~ 623 (857)
.-|.+.+.+=-|-+.|+.+. -..|++.-|.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE--~lDP~pEnWe 498 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELE--ILDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHH--ccCCCccccC
Confidence 35666666666666666554 2345555553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-05 Score=83.60 Aligned_cols=290 Identities=16% Similarity=0.082 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 260 i~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+....-.-..-+-..+++.+..++++...+. .+++...+..-|.++...|+..+-..+=..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------------DPFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------------CCCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 3455666666667777889999999999998776 456666777778888888988887777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003016 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419 (857)
Q Consensus 340 m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~ 419 (857)
|++. -|+... +|-++.--|.-.|+..+|++.|.+...-+..- ...|-.....|+-.|..++|+.-|
T Consensus 304 LV~~--yP~~a~-----------sW~aVg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 304 LVDL--YPSKAL-----------SWFAVGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HHHh--CCCCCc-----------chhhHHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHH
Confidence 8765 344322 24677777778899999999999876544332 235999999999999999999888
Q ss_pred HHHHhc-CCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 420 EKIKSL-RHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 420 ~~m~~~-~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
...-+. .|. .| .-| +-.-|.+.++++.|.++|.+...-++.|+...+-+--.....+.+.+|..+|......-
T Consensus 370 ~tAarl~~G~hlP--~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i- 444 (611)
T KOG1173|consen 370 FTAARLMPGCHLP--SLY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI- 444 (611)
T ss_pred HHHHHhccCCcch--HHH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh-
Confidence 765541 121 22 222 33357888999999999999988788889999988888888999999999999876321
Q ss_pred CCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 498 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 498 ~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
........-...+++.|-.+|.+.+.+++|+..|++.+.. .+-|..+|.++--.|...|+++.|.+.|+...-
T Consensus 445 ------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 445 ------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 0000001124557888888899999999999999988764 345677888888888899999999999987654
Q ss_pred CCCCCCHHHHHHHHHH
Q 003016 578 AGEIPHPLFFTEMLIQ 593 (857)
Q Consensus 578 ~gi~p~~~~~~~li~~ 593 (857)
+.|+..+-..++..
T Consensus 518 --l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 518 --LKPDNIFISELLKL 531 (611)
T ss_pred --cCCccHHHHHHHHH
Confidence 67776666666553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0033 Score=70.77 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHH
Q 003016 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (857)
Q Consensus 194 ~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~ 273 (857)
-.+++.| ..+.+..+++..+.+++..+ ..++ +....---+...|+-++|....+.-.. +-..+.+.|+.+.-.
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~~--eHge--slAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKFP--EHGE--SLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhCC--ccch--hHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHH
Confidence 3344444 34667777888777776321 1222 322222234556899999988877765 345678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
+-...++++|++.|......+ +-|...|.-+--.-++.++++.....-..+.+. .|....+
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~----------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~- 145 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE----------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRAS- 145 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHH-
Confidence 999999999999999998753 445666665555556788888888877777764 5666555
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHH------HHHHHCCCHHHHHHHHHHHHhcC
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELA------CCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~~d~~t~~~lI------~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
|..+..++.-.|+...|..+.++..... -.|+...|.-.. ....+.|..++|++.+..-+.
T Consensus 146 ----------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-- 213 (700)
T KOG1156|consen 146 ----------WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-- 213 (700)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--
Confidence 7888888999999999999999887654 356655555443 345667888888887765543
Q ss_pred CCCCcHHHH-HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 003016 427 HSKPLEITF-TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETTRA 495 (857)
Q Consensus 427 g~~pd~~t~-~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~~~ 495 (857)
...|...| -.-..-+.+.+++++|..++..+....+-+...|--+..++.+--+.-++. .+|....+.
T Consensus 214 -~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 214 -QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred -HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 22333332 334456788999999999999998855445555555566665444444444 666666543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-05 Score=82.35 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-+......-..-|-..+++++..++.+.+... ++++...+..=|..+...|+..+-..+=.+|.+. .+-...||
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcch
Confidence 34444455555566778899999999888763 4445566777777888888888777777777774 34457899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
-++.--|--.|...+|.+.|.+..... ..=...|-.....|+-.|..+.|...+...-+.=...
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD----------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLD----------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcC----------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 999888888899999999998876543 2234578888888888999999888877765532111
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-- 425 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-- 425 (857)
...++ -+---|.+.+++.-|.+.|.+..... +.|....+-+....-+.+.+.+|..+|......
T Consensus 380 hlP~L-------------Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 380 HLPSL-------------YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred cchHH-------------HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 11111 13335777899999999998876543 235667787777777788999999999877631
Q ss_pred --CCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 003016 426 --RHSK-PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 502 (857)
Q Consensus 426 --~g~~-pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~ 502 (857)
..-. --..+++.|-.+|.+++.+++|...|+....-.+.+..++.++.-.|...|+++.|.+.|.+...
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-------- 517 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-------- 517 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--------
Confidence 0111 13456888999999999999999999999988889999999999999999999999999999887
Q ss_pred cCCCCCCCCCCHhHhhhhHHHH
Q 003016 503 LSGDGAPLKPDEYTYSSMLEAS 524 (857)
Q Consensus 503 ~~~~~~~~~pd~~t~~~ll~a~ 524 (857)
+.||..+-..++..+
T Consensus 518 -------l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 518 -------LKPDNIFISELLKLA 532 (611)
T ss_pred -------cCCccHHHHHHHHHH
Confidence 669988887777743
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00025 Score=76.84 Aligned_cols=391 Identities=14% Similarity=0.049 Sum_probs=235.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHH
Q 003016 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLG 275 (857)
Q Consensus 198 ~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~ 275 (857)
.-|-+.|.+++|++.+.+.+... || .+-|...-.+|...|+++...+.-....+ +.|+ +-.+..-.+++-
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~-----p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC-----PDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC-----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHH
Confidence 45667899999999999998643 34 67788888999999999998887777765 3465 446666677888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH--------HHHHHH-c--C
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV--------FKQLRK-S--G 344 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l--------~~~m~~-~--g 344 (857)
..|++++|+.=..-. +++.++....-.-.+.++ .++-.+ . -
T Consensus 195 ~lg~~~eal~D~tv~----------------------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL----------------------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP 246 (606)
T ss_pred hhccHHHHHHhhhHH----------------------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 888888775432211 111111111111111111 111111 1 1
Q ss_pred CCCCHHHHHHHHHHHH-----------HhHHHHHHHHH----HHc-CCHHHHHHHHHHHhh---cCCCC---CHHHHHHH
Q 003016 345 LKPSAATYGLAMESYR-----------RCLLKVLVRAF----WEE-GKINEAVAAVRNMEQ---RGVVG---TASVYYEL 402 (857)
Q Consensus 345 ~~pd~~t~~~ll~~~~-----------~~~~~~Li~~y----~k~-g~~~~A~~lf~~m~~---~~~~~---d~~t~~~l 402 (857)
+-|......+.+..|. .-+...+..++ ... ..+..|...+.+-.. ..... |... --|
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~ 325 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYM 325 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHH
Confidence 2233332222222222 00111111111 110 112222222222110 00000 1111 111
Q ss_pred HH-------HHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 403 AC-------CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 403 I~-------~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
.. -+.-.|+.-.|...|+..... .-.++. .|--+-.+|....+-++....|+...+--+-|..+|..--.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc-Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 11 233457888888888888762 222222 266666788999999999999999887444566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
+.-.+++++|..=|++.+. +.| +...|..+--+..+.+.+++++..|++.++. ++--+.+|+.
T Consensus 404 ~flL~q~e~A~aDF~Kai~---------------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAIS---------------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhh---------------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 7778889999999999887 446 4566777766777788999999999998873 5555678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHH
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEA-----GEIPHPLF--FTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELF 626 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~-----gi~p~~~~--~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll 626 (857)
....+...++++.|.+.|+...+. ++..++.. --.++-.- =.+++..|++++++..+ +.|-. ..+.+|-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tla 544 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLA 544 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 888899999999999999987653 22222221 12222221 23888999999988753 33433 4677777
Q ss_pred HHhhhccCHHHHHHHHHHHH
Q 003016 627 ESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 627 ~a~~~~g~~e~~~~l~~~m~ 646 (857)
.--...|+.++|.++++.-.
T Consensus 545 q~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 77778888888888886554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9e-06 Score=83.29 Aligned_cols=231 Identities=11% Similarity=0.127 Sum_probs=183.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
-+-+-..|.+.|.+.+|.+.|..-.++ .|-+.||-.|-..|.+..+...|+.+|.+-...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------- 285 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------- 285 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------------
Confidence 366788899999999999999988775 488889999999999999999999999988763
Q ss_pred CCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 311 EPDLVVYN-AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 311 ~pd~~t~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
.|-.+||- -+-+.+-..++.++|.++++...+.. ..++... ..+...|.-.++.+-|++.+.++.+
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai------------Acia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI------------ACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee------------eeeeeccccCCChHHHHHHHHHHHH
Confidence 45555554 45566778899999999999988753 1122222 4556677788999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHH
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI--TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG 467 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~ 467 (857)
.|+. +...|+.+.-+|...+++|-++.-|.+... .-..|+.. +|-.+-......|++..|.+.|+-...+-..+..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 9976 445577777788888999999999988877 33445543 4555555666789999999999998886667788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|.|.-.-.+.|++++|..++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.6e-06 Score=83.43 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF-TGLIISSM 443 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~ 443 (857)
+-+-.+|.+.|...+|.+.|+.-...-. -..||-.|-.+|.+..++..|+.+|.+-.+ ..|-.+|| ..+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHH
Confidence 4455555566666666666555444322 223455555556666666666666555443 12333332 33444444
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
..++.++|.++++...+..+.++....++..+|.-.++++-|+..++++...| + -+...|+.+--+
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------------~-~speLf~NigLC 367 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------------A-QSPELFCNIGLC 367 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------------C-CChHHHhhHHHH
Confidence 45555555555555555334455555555555555555555555555555554 1 233445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
|.-.++++.++.-|.+....--.|+.. +|..+-......|++..|.+.|+.....+ .-+...++.|--.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 555555555555555554433333322 33333333344455555555555544432 113344555544445555555
Q ss_pred HHHHHHHHh
Q 003016 602 KAVALINAM 610 (857)
Q Consensus 602 ~A~~l~~~M 610 (857)
+|..+++..
T Consensus 447 ~Arsll~~A 455 (478)
T KOG1129|consen 447 GARSLLNAA 455 (478)
T ss_pred HHHHHHHHh
Confidence 555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00062 Score=70.83 Aligned_cols=378 Identities=11% Similarity=0.074 Sum_probs=216.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
+.-+...+++..|+.+++.-...+.. ...++.. .+...|.+.|++++|..++.-+.++ -.|+...|..|.-++.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~l--Wia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQL--WIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHH--HHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHH
Confidence 45566678999999999876533221 1112233 3556778899999999999988763 35788888888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|.+.+|..+-... ..++..-..|+...-+.++-++-..++..+...- -|.
T Consensus 104 Lg~Y~eA~~~~~ka--------------------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--Edq------- 154 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKA--------------------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--EDQ------- 154 (557)
T ss_pred HHHHHHHHHHHhhC--------------------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HHH-------
Confidence 89999998876543 3344445556666667788888777777775431 122
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY-ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~-~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
-+|..+.-..-.+++|..++.+....+.. -...| -|.-+|.+..-++-+.++++-..+ .++-+.+..
T Consensus 155 --------LSLAsvhYmR~HYQeAIdvYkrvL~dn~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~ 222 (557)
T KOG3785|consen 155 --------LSLASVHYMRMHYQEAIDVYKRVLQDNPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAK 222 (557)
T ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHhcChh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHH
Confidence 23444444445778888888887755422 11122 244567788888888888877765 222223333
Q ss_pred HHHHHHHHc--CCCH---------------------------------HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 436 TGLIISSMD--GGHI---------------------------------DDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 436 ~~ll~a~~~--~g~~---------------------------------~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
|....-..+ .|+. +.|.+++-.+.+. -...--.|+--|.+.+
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccc
Confidence 322221111 1111 1222222222211 1122234555678889
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHH-H----hcCCHHHHHHHHHHHHHcCCCCCHHHH-HH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS-A----TAHQWEYFEYVYKGMALSGCQLDQTKH-AW 554 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~-~----~~g~~~~a~~l~~~m~~~g~~pd~~t~-~~ 554 (857)
++.+|..+.+++.- ..|-.+....+..+- . ....+.-|.+.|+..-.++..-|...- -+
T Consensus 300 dVqeA~~L~Kdl~P---------------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 300 DVQEAISLCKDLDP---------------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred cHHHHHHHHhhcCC---------------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 99999988887642 345444444433321 1 112356677777665555555443322 22
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh-hhcc
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESN-EDRI 633 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~-~~~g 633 (857)
+...+.-.-++++..-+++.+..--..-|...|| +..+.+..|++.+|.++|-+.....+ -|..+|.+++..| .+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence 3333344456777777777776543333334443 55667777777777777766543222 3445665555544 4445
Q ss_pred CHHHHHH
Q 003016 634 SRDKLEK 640 (857)
Q Consensus 634 ~~e~~~~ 640 (857)
..+.|-.
T Consensus 443 kP~lAW~ 449 (557)
T KOG3785|consen 443 KPQLAWD 449 (557)
T ss_pred CchHHHH
Confidence 5555433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00015 Score=78.15 Aligned_cols=95 Identities=12% Similarity=-0.041 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.|..+-..|.+.|+.+.|...|++..+. -+.+...|+.+...+...|++++|...|++..+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------------- 128 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--------------- 128 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 3444444555555555555555555441 11234455555555555555555555555554421
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+-+..+|..+..++...|++++|.+.|+...+
T Consensus 129 -P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 129 -PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11334444444445555555555555555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0014 Score=72.67 Aligned_cols=203 Identities=15% Similarity=0.100 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
....|..+...|...|+++.|.+.+........-.++.. ........+...|++++|..++++.....
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------- 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----------- 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------
Confidence 345566666667777777777666666554211112221 12222345567788888888888876642
Q ss_pred CCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
+.|...++. ...+.. .+....+.+.+.. .....|+.... ...+...+...|++++|.
T Consensus 74 -----P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~-----------~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 74 -----PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYL-----------LGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred -----CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHH-----------HHHHHHHHHHcCCHHHHH
Confidence 334444442 222222 3444444444443 12233443322 245556777888888888
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
..+++..+.... +...+..+...|...|++++|...+.+........|+. ..|..+...+...|+.++|..+++...
T Consensus 135 ~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 135 EAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 888888776532 34557777888888888888888888776522112332 235567777888888888888888875
Q ss_pred h
Q 003016 460 D 460 (857)
Q Consensus 460 ~ 460 (857)
.
T Consensus 214 ~ 214 (355)
T cd05804 214 A 214 (355)
T ss_pred c
Confidence 4
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00027 Score=76.16 Aligned_cols=215 Identities=16% Similarity=0.020 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 169 EMTAKNWKFVRIMNQSG-LMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 169 ~~~~~A~~l~~~M~~~g-~~p~--~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
+..+.++.-+.++.... ..|+ ...|..+-..+...|+.+.|...|...++.. +.+..+|+.+-..|...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence 44556666666666432 2232 2346666777889999999999999998753 337889999999999999999
Q ss_pred HHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 003016 246 EALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~ 324 (857)
.|...|+...+. .| +..+|..+..++...|++++|.+.|+...+.. |+..........+
T Consensus 116 ~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----------------P~~~~~~~~~~l~ 175 (296)
T PRK11189 116 AAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----------------PNDPYRALWLYLA 175 (296)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHH
Confidence 999999999872 35 47788889999999999999999999988743 4332222222234
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh---cCCC--C-CHHH
Q 003016 325 VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ---RGVV--G-TASV 398 (857)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~--~-d~~t 398 (857)
...++.++|...|....... .|+... ..+... ..|+...+ ..|..+.+ ..+. | ....
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~-~~~~~~-------------~~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKL-DKEQWG-------------WNIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred HccCCHHHHHHHHHHHHhhC-CccccH-------------HHHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 55778999999997765432 333221 122222 34454443 24444432 1111 1 2346
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
|..+...+.+.|++++|...|++...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888888888888888888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.9e-07 Score=62.31 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 259 gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
|+.||.+|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0013 Score=69.97 Aligned_cols=291 Identities=12% Similarity=0.042 Sum_probs=170.8
Q ss_pred HHHHHHc--CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 235 LAILGKA--GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 235 i~~y~k~--g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
|.+|+.+ ++-..|...|-......-++-|+.....+...+...|+.++|...|+..+. ..|
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----------------~dp 263 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----------------ANP 263 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----------------CCh
Confidence 4444443 333333333333333223444666677777777777777777777777654 334
Q ss_pred CHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 313 DLVV----YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 313 d~~t----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.++ |..| +.+.|+++....+...+....-. .... |-.-........++..|+.+-++-.
T Consensus 264 y~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~------------wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 264 DNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASH------------WFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred hhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhh------------hhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 3322 2222 34566666666666665433100 0000 1112222334566777777666655
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHH
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~ 468 (857)
+.+... ...|-.=...+.+.|+.++|.--|+..+.. -+-+..+|..|+..|...|.+.+|.-.-....+-+..+..+
T Consensus 328 ~~~~r~-~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 328 DSEPRN-HEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred ccCccc-chHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 433221 112333334566778888888888776541 12355678888888888888888776655554433345555
Q ss_pred HHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 469 VNAML-KVYSR-NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 469 ~~~li-~~~~~-~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
.+.+- ..+.- ...-++|.++++.-.+ +.|+-. ..+.+..-|...|..+.+..+++.... .
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~---------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~ 467 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLK---------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--I 467 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhc---------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--h
Confidence 44442 22221 2234788888888776 447653 344455567777888888888887765 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 546 ~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
.||...++.|-+.+.....+.+|++.|......
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888888888888888888888888877663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0024 Score=70.79 Aligned_cols=308 Identities=12% Similarity=0.024 Sum_probs=163.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
+..+...+...|+.+.+.+.+....+..... .+. .........+...|+++.|..++++..+. .+.|...++. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAAR--ATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 3333344444566666555555544332221 121 22222233456678888888888887663 2234444442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 272 VTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD-LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 272 ~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
..+.. .+....+.+.+.. ..+ ..|+ ......+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~---------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAP---------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCc---------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 22222 3444444444443 111 2333 3344455566778888888888888887753
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTA--SVYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d~--~t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
|+.... +..+...|...|++++|...+++...... .++. ..|..+...+...|++++|..+|++..
T Consensus 145 p~~~~~-----------~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 145 PDDAWA-----------VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 333221 26777788888888888888887665432 1222 345567778888888888888888875
Q ss_pred hcCCCCCcHHHH-H--HHHHHHHcCCCHHHHHHH---HHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 424 SLRHSKPLEITF-T--GLIISSMDGGHIDDCISI---FQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 424 ~~~g~~pd~~t~-~--~ll~a~~~~g~~~~A~~i---f~~m~~~~~p~--~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
......+..... + .++.-+...|....+.++ ...-....... .........++...|+.+.|..++..+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 214 APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 421111222211 1 333334444544444333 22211111111 122235666778889999999999998764
Q ss_pred CCCCccccCCCCCCCCCCHhHhhhhHH--HHHhcCCHHHHHHHHHHHHH
Q 003016 496 NSSGYTFLSGDGAPLKPDEYTYSSMLE--ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 496 g~~~~~~~~~~~~~~~pd~~t~~~ll~--a~~~~g~~~~a~~l~~~m~~ 542 (857)
... + ...+... ..+-..++. ++...|+.+.|.+.+.....
T Consensus 294 ~~~----~--~~~~~~~-~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 294 ASS----A--DDNKQPA-RDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred Hhc----c--CchhhhH-HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 300 0 0000100 111122222 34456888888887776554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.01 Score=69.53 Aligned_cols=427 Identities=15% Similarity=0.170 Sum_probs=248.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH--------HHHHHHH-hCcCC-------
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS-WRQAM--------SVLDWVY-GLKDK------- 222 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~-~~~A~--------~l~~~~~-~~~~~------- 222 (857)
.|+....++++..--+-+++.....|. -+..+++++.+.|....+ ++.-+ .+.+... ++.+.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 344445566666666677788888885 588999988887765532 22211 1111111 11000
Q ss_pred CCCCC---------HHHHHHHHHHHHHcCChh-----------HHHHHHHHhHHcCCC--CCCHHHHHHHHHHHHhcCCH
Q 003016 223 RDLKS---------RFVYTKLLAILGKAGRPH-----------EALRIFNLMLEDCNL--YPDIAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 223 ~~~~~---------~~~~n~Li~~y~k~g~~~-----------~A~~vf~~m~~~~gi--~pd~~t~~~li~~~~~~g~~ 280 (857)
.+.-| ...|-.+..-+.+..+++ .-+.+.++.... ++ ..|+..-...+.++...+..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCc
Confidence 00001 112222333333333322 234566766552 32 24677777888999999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHH---------------------------HHhcCChHHH
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA---------------------------CVPSHQWKGV 333 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~---------------------------~~~~g~~~~A 333 (857)
.+..++++++.-.++. +.-+...-|.+|-. +...+-+++|
T Consensus 1001 ~eLIELLEKIvL~~S~-------------Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSV-------------FSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEA 1067 (1666)
T ss_pred HHHHHHHHHHhcCCcc-------------cccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHH
Confidence 9999999999765411 11122222223222 2233334444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
+.+|+..-. +.... +.||. .-+.++.|.+.-++.. ...+|+.+..+-.+.|...
T Consensus 1068 F~ifkkf~~-----n~~A~------------~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1068 FAIFKKFDM-----NVSAI------------QVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHHhcc-----cHHHH------------HHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 444443211 11111 23332 2344555555444432 2345888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
+|++-|-+. -|...|.-+++.+.+.|.+++-.+.+....+ .-.|.+ =+.||-+|++.+++.+-.++.
T Consensus 1122 dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---
Confidence 888766432 4566788899999999999998888876665 333444 367888999999888776665
Q ss_pred HHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 493 TRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 493 ~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
.-||......+-.-|...|.++.|.-+|.. ...|..|...+.+.|.+..|...-
T Consensus 1190 -----------------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1190 -----------------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -----------------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 338888888888888888888888877763 345666666677777776666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCC
Q 003016 573 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAAS 652 (857)
Q Consensus 573 ~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p 652 (857)
+.. .+..+|-.+-.+|...+.+.-| +|--..+.....-+.-|+.-|...|-+++...+++.-. |+..
T Consensus 1244 RKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLER 1310 (1666)
T KOG0985|consen 1244 RKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLER 1310 (1666)
T ss_pred hhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhH
Confidence 433 2456677766676665544433 22222334445556666677777777666665554433 4443
Q ss_pred ChhhHHHHHHHHHHHhccCchhhhHh
Q 003016 653 SEITVSNLSRALHALCRSEKERDLSS 678 (857)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 678 (857)
...++-+-+..+|+....++..+..+
T Consensus 1311 AHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444444666666666655555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.6e-07 Score=60.85 Aligned_cols=34 Identities=26% Similarity=0.626 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.|+.||..|| |+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty------------~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTY------------NTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHH------------HHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999998 999999999999999999999994
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.014 Score=65.18 Aligned_cols=421 Identities=14% Similarity=0.097 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL- 234 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L- 234 (857)
..+-+=++.....+.+++|+.....+...+ +-+...+..=+-++.+.+.++.|+.+.+.-. -..++|..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~ 82 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFF 82 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhh
Confidence 334444566778889999999999998876 4455567777778888999999997765321 11223333
Q ss_pred -HHHHH--HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 235 -LAILG--KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 235 -i~~y~--k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
=.+|| +.+..++|+..++.... -|..+...-...+-+.|++++|+.+|+.+.+.+. ..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~--------------dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS--------------DD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------ch
Confidence 44555 67899999999984433 2444555666778899999999999999977651 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 003016 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ-- 389 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~-- 389 (857)
-|...-..++.+-... .+ ..|......| ..+|..+ || ....+...|++.+|+++++...+
T Consensus 144 ~d~~~r~nl~a~~a~l----~~----~~~q~v~~v~-e~syel~--------yN-~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 144 QDEERRANLLAVAAAL----QV----QLLQSVPEVP-EDSYELL--------YN-TACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHHHHHHHHHHhh----hH----HHHHhccCCC-cchHHHH--------HH-HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1222222222221110 11 1222222333 2233221 12 22345567788888877776611
Q ss_pred ------cCCC-----CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHc---------
Q 003016 390 ------RGVV-----GTA-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMD--------- 444 (857)
Q Consensus 390 ------~~~~-----~d~-~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~~~--------- 444 (857)
.+.. ... .+--.|.-++-..|+-++|..+|..... ...+|.. .-|.|+..-..
T Consensus 206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHH
Confidence 1111 000 1122344556677888888888777766 2233321 12222221111
Q ss_pred ------------------------------------CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--cCCHHHHH
Q 003016 445 ------------------------------------GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--NDMFSKAK 486 (857)
Q Consensus 445 ------------------------------------~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~--~g~~~~A~ 486 (857)
.+..+.+.++-..... ..|.. .+.+++....+ .....+|.
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~-~~p~~-~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG-MSPES-LFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc-cCchH-HHHHHHHHHHHHHHHHHhhhH
Confidence 1111222222111111 11222 22333333222 22456666
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhhhHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSSMLEASATAHQWEYFEYVYK--------GMALSGCQLDQTKHAWLL 556 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~l~~--------~m~~~g~~pd~~t~~~Ll 556 (857)
+++...-... |+. ...-.++.-....|+++.|.+++. ...+.+..|.. ..+++
T Consensus 362 e~L~~~~~~~---------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv 424 (652)
T KOG2376|consen 362 ELLLQFADGH---------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIV 424 (652)
T ss_pred HHHHHHhccC---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHH
Confidence 6666655433 433 344455566677899999999998 55555555544 45677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhh
Q 003016 557 VEASRAGKCHLLEHAFDSLLEA--GEIPHP----LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 630 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~m~~~--gi~p~~----~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~ 630 (857)
..+.+.++-+-|..++++.... .-.+.. .+|.-+..--.++|+-++|..+++++... ..+|..+...++.+++
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 7788888888888888766542 111222 23333344445679999999999998753 3567778888888887
Q ss_pred hccCHHHHHHHHHHHH
Q 003016 631 DRISRDKLEKLLNALC 646 (857)
Q Consensus 631 ~~g~~e~~~~l~~~m~ 646 (857)
. -+++.+..+-+.+.
T Consensus 504 ~-~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 504 R-LDPEKAESLSKKLP 518 (652)
T ss_pred h-cCHHHHHHHhhcCC
Confidence 6 46777777665443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.02 Score=65.93 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.|..+|..|.-+..++|+++.+-+.|++... +..-....|+.+-..|...|.-..|..+++.-....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~----------- 387 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS----------- 387 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-----------
Confidence 4788899999999999999999999998765 455677889999999999999889999888765542
Q ss_pred CCCCCCCC-HHHHHHHHHHHH-hcCChHHHHHHHHHHHHc--C----CCCCHHHHHHHHHHHH-----------------
Q 003016 306 WDPVLEPD-LVVYNAVLNACV-PSHQWKGVFWVFKQLRKS--G----LKPSAATYGLAMESYR----------------- 360 (857)
Q Consensus 306 f~~~~~pd-~~t~~~li~~~~-~~g~~~~A~~l~~~m~~~--g----~~pd~~t~~~ll~~~~----------------- 360 (857)
..|+ ...+-..-..|. +.+..+++..+-.+.... | +.|-...+-.+-..+.
T Consensus 388 ----~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 388 ----EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred ----cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 2243 333322222233 245555555555554441 1 1111111100000000
Q ss_pred ---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 361 ---------------RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 361 ---------------~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.+. --|---|+..++++.|.....+...-+-..+...|..+.-.+...+++.+|+.+.+.....
T Consensus 464 lqale~av~~d~~dp~~i-f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVI-FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCCCchHH-HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0122234445556666665555555544445555555555555566666666555544431
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh----------------------C-------CCCCHHHHHHHHHHH
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD----------------------H-------CEPNIGTVNAMLKVY 476 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~----------------------~-------~~p~~~~~~~li~~~ 476 (857)
.|.. ..-...-+..-...++.+++......+.. + ..-.+.++..+....
T Consensus 543 ~~~N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 543 FGDN--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhh--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1110 00000000000001111111111111000 0 000011111111111
Q ss_pred HhcC---CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC------HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003016 477 SRND---MFSKAKELFEETTRANSSGYTFLSGDGAPLKPD------EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547 (857)
Q Consensus 477 ~~~g---~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd------~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p 547 (857)
...+ ..+.. |.. . ...-.|+ ...|......+...++.++|...+.+..+ +.|
T Consensus 621 a~~~~~~~se~~------Lp~-----s------~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 621 ASQLKSAGSELK------LPS-----S------TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred Hhhhhhcccccc------cCc-----c------cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 0000 00000 000 0 0012343 34566666778888888888877776654 333
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHhhhCCCccCHHHHH
Q 003016 548 D-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVA--LINAMAYAPFHITERQWT 623 (857)
Q Consensus 548 d-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~--l~~~M~~~~~~p~~~~~~ 623 (857)
- ...|.-.-..+...|..++|.+.|...... .| ++.+.+++-..+.+.|+..-|.. ++..+.+-+ .-+...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHH
Confidence 3 345555555677889999999999877653 44 34567777778888888777777 888876432 23457888
Q ss_pred HHHHHhhhccCHHHHHHHHHHHHhCCC
Q 003016 624 ELFESNEDRISRDKLEKLLNALCNCNA 650 (857)
Q Consensus 624 ~Ll~a~~~~g~~e~~~~l~~~m~~~g~ 650 (857)
.|-......|+.+.|...+....+..-
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 888888899999999888887776543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0006 Score=67.47 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD- 513 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd- 513 (857)
...|--+|...|+...|..-+++..+.-+.+..+|..+...|-+.|..+.|.+-|++.... .|+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------------~p~~ 102 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------------APNN 102 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------CCCc
Confidence 4445566777777777777777777765566677777777777777777777777777663 353
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI 592 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~ 592 (857)
....|.--.-+|..|.+++|.+.|++....=.-+ -..+|..+.-+..+.|+.+.|.++|+...+.. +-.....-.+..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~ 181 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELAR 181 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHH
Confidence 3445555555677777777777777776542222 23466666666677788888888887776652 112345556667
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 593 QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
.....|++-.|..+++.....+. ++...+--.+.-....|+.+.+.+.-..+...
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777888888777777766554 77766666666667777777776666655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0022 Score=72.25 Aligned_cols=77 Identities=13% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
.+-.....|.+|+.+++.++. .. .-.--|..+.+.|+..|+++.|.++|-+.- .++--|.+|.++|+|+
T Consensus 740 eaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 333444555566665555544 11 111224444555556666666666554332 2444555666666666
Q ss_pred HHHHHHHH
Q 003016 484 KAKELFEE 491 (857)
Q Consensus 484 ~A~~lf~~ 491 (857)
.|.++-.+
T Consensus 809 da~kla~e 816 (1636)
T KOG3616|consen 809 DAFKLAEE 816 (1636)
T ss_pred HHHHHHHH
Confidence 66555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00068 Score=81.73 Aligned_cols=217 Identities=14% Similarity=0.092 Sum_probs=173.7
Q ss_pred ChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC-----HHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD-----LVV 316 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd-----~~t 316 (857)
.++.|.++-+.++.. || ...|-..|.-..+.++.++|.+++++.... +.+. ...
T Consensus 1440 ~pesaeDferlvrss----PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t----------------IN~REeeEKLNi 1499 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS----PNSSILWIRYMAFHLELSEIEKARKIAERALKT----------------INFREEEEKLNI 1499 (1710)
T ss_pred CCcCHHHHHHHHhcC----CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----------------CCcchhHHHHHH
Confidence 344555555555543 55 678999999999999999999999998765 2221 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
|.++++.-..-|.-+...++|+++.+.- |..+. |..|...|.+.+..++|-++|+.|.++-- -..
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V-----------~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~ 1564 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC---DAYTV-----------HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR 1564 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHH-----------HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh
Confidence 8888888788888888999999998753 44443 58999999999999999999999987632 344
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP--LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
.+|...+..+.++.+-+.|..++.+... . ++- ......-.+..-.+.|+.+.++.+|+......+.-...|+..|+
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~-~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALK-S-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHh-h-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 5699999999999999999999998876 2 222 22334555666678999999999999998877778899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 003016 475 VYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+=.++|+.+.+..+|++....+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999877
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.011 Score=65.41 Aligned_cols=422 Identities=10% Similarity=0.076 Sum_probs=221.9
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 230 (857)
...|+++|..|++.+..+ ..+++..++++|... ++-....|..-|+.-....+++...++|.+.+.. ..+...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-----vLnlDL 88 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-----VLNLDL 88 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhhHhH
Confidence 467899999999988777 999999999999854 2345557888899999999999999999988653 236778
Q ss_pred HHHHHHHHHHc-CChhH----HHHHHHHhHHcCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHcCCC
Q 003016 231 YTKLLAILGKA-GRPHE----ALRIFNLMLEDCNLYPDI-AAYHSVAVT---------LGQVGLLKELVKLIERMRQKPS 295 (857)
Q Consensus 231 ~n~Li~~y~k~-g~~~~----A~~vf~~m~~~~gi~pd~-~t~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~ 295 (857)
|..-|+---+. |.... -.+.|+-..+..|+.+-. ..|+.-+.- |..+.+.+...++|.++...+.
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 88777644332 33332 233455555544544432 235554432 4445566778888998887652
Q ss_pred hhhhhhhhhcCCCCCCCCHHHHHHHHHHH-------HhcCChHHHHHHHHHHHH--cCCCCCHHH------HHHHHHHHH
Q 003016 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNAC-------VPSHQWKGVFWVFKQLRK--SGLKPSAAT------YGLAMESYR 360 (857)
Q Consensus 296 ~~l~~m~~k~f~~~~~pd~~t~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~t------~~~ll~~~~ 360 (857)
..+-.|. .|-..|-.=|+.. -+...+..|+++++++.. .|+.-+..+ -..+..
T Consensus 169 ~nlEkLW---------~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q--- 236 (656)
T KOG1914|consen 169 HNLEKLW---------KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ--- 236 (656)
T ss_pred ccHHHHH---------HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH---
Confidence 2222221 0111121111111 123445566666666532 233221111 100000
Q ss_pred HhHHHHHHHHHHHcCCH------H--HHHHHHHH-HhhcCCCCCHHHHHHHHHH-------HHHCC-------CHHHHHH
Q 003016 361 RCLLKVLVRAFWEEGKI------N--EAVAAVRN-MEQRGVVGTASVYYELACC-------LCNNG-------RWQDAML 417 (857)
Q Consensus 361 ~~~~~~Li~~y~k~g~~------~--~A~~lf~~-m~~~~~~~d~~t~~~lI~~-------~~~~g-------~~~~A~~ 417 (857)
...|-.+|.-=-..+-. - ...-++++ |.--+..|+. |----.- +...| .-+++..
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pei--Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEI--WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 11122222111111000 0 00001111 1111222211 1110000 11111 1345555
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHH---cCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 418 VVEKIKSLRHSKPLEITFTGLIISSM---DGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 418 l~~~m~~~~g~~pd~~t~~~ll~a~~---~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
+++.... .-..-+..+|..+.+--- +....+....++++... ...|+ .+|...|..--+..-+..|..+|.+.
T Consensus 315 ~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 315 IYERAIE-GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555443 222223344443332211 11134555555555554 23333 34666666666666677777777777
Q ss_pred HHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 493 TRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 571 (857)
Q Consensus 493 ~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~ 571 (857)
.+.+ ..+ ++..++++|.-+|. ++.+-|.++|+--.+. +.-++.--...++-+++.++=+.+..+
T Consensus 393 R~~~-------------r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~L 457 (656)
T KOG1914|consen 393 REDK-------------RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARAL 457 (656)
T ss_pred hhcc-------------CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHH
Confidence 7766 555 56666666666555 6667777777654432 222233334555566677777777777
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 572 FDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 572 ~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
|+.....++.|+ ...|..+|.-=..-|++.-++++-+++
T Consensus 458 FEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 458 FERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777777655554 357777777777777777777776665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.011 Score=67.80 Aligned_cols=388 Identities=14% Similarity=0.143 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCC-----
Q 003016 188 FTEGQMLKLLKG--LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL----- 260 (857)
Q Consensus 188 p~~~t~~~ll~a--~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi----- 260 (857)
-|..|--.++.- |...|+.+.|.+-...+ .+..+|..|.+++.+..+++-|.-.+..|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 456666666543 66779999999887765 26689999999999999999888777777652121
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003016 261 ---YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (857)
Q Consensus 261 ---~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~ 337 (857)
.|+ .+=.-+.....+.|.+++|+.+|++-++.. .|=..|...|.|++|+++-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D------------------------LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD------------------------LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------------------------HHHHHHHhcccHHHHHHHH
Confidence 122 222223333457788999999999887642 3334466778888888876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH-----------hhc--------CCCCCHHH
Q 003016 338 KQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM-----------EQR--------GVVGTASV 398 (857)
Q Consensus 338 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m-----------~~~--------~~~~d~~t 398 (857)
+.=-+-.++.+-+-| ..-+-..++++.|++.|++- .+. .-..|...
T Consensus 850 E~~DRiHLr~Tyy~y---------------A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 850 ETKDRIHLRNTYYNY---------------AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred hhccceehhhhHHHH---------------HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 543332233222222 12222334455555444432 111 00123333
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
|.--..-+-..|+.+.|+.+|...+. |.+++...|-.|++++|-++-++- -|......+...|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhh
Confidence 44444444567888888888776654 566777777889999998887664 366777788899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC---------------CHHHHHHHHHHHHHc
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH---------------QWEYFEYVYKGMALS 543 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g---------------~~~~a~~l~~~m~~~ 543 (857)
.|++.+|..+|.+.+. |...|.-|-.++ +.-.|-+.|++ .
T Consensus 980 ~g~v~~Av~FfTrAqa----------------------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~ 1034 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQA----------------------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---L 1034 (1416)
T ss_pred hHHHHHHHHHHHHHHH----------------------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---c
Confidence 9999999999987653 333333332222 22233333433 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAF---------DSLLEA-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~---------~~m~~~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
|... ..-+..|-++|.+..|.++- +.+.+. .-..|+...+.--+-++.+.++++|..++-...
T Consensus 1035 g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar-- 1107 (1416)
T KOG3617|consen 1035 GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR-- 1107 (1416)
T ss_pred chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Confidence 2221 12234578888888887762 222221 223466666666666777788888888765542
Q ss_pred CCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHhcc-CchhhhHhh
Q 003016 614 PFHITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRALHALCRS-EKERDLSSS 679 (857)
Q Consensus 614 ~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 679 (857)
-|..-++-|.. .++...+++.+.|. ..+-.|++.+-..++..+-.+|-. |..|.+.+.
T Consensus 1108 -------~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1108 -------EFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred -------HHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 23334444433 33344444444444 222344555556666666666643 445665553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.16 E-value=6e-05 Score=80.34 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH----c
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM----D 444 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~----~ 444 (857)
.+|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ . ..| .+...+..++. -
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCc-HHHHHHHHHHHHHHhC
Confidence 3455677777777776542 2334455667777888888888888888765 1 223 33333333332 2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS 524 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~ 524 (857)
...+.+|..+|+++...+.+++.+.|.+..++...|++++|.+++.+..... .-|..|+..++.++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------------~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------------PNDPDTLANLIVCS 245 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------------CCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------------cCCHHHHHHHHHHH
Confidence 3467888888888777667778888888888888888888888888765533 12445666677766
Q ss_pred HhcCCH-HHHHHHHHHHHH
Q 003016 525 ATAHQW-EYFEYVYKGMAL 542 (857)
Q Consensus 525 ~~~g~~-~~a~~l~~~m~~ 542 (857)
...|+. +.+.+.+.++..
T Consensus 246 ~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCChhHHHHHHHHHHH
Confidence 777766 556667776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.019 Score=72.30 Aligned_cols=347 Identities=12% Similarity=-0.012 Sum_probs=208.8
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH-
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV- 315 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~- 315 (857)
.+...|+++.+...+..++.. ....+..........+...|++++|..++......-... +....+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~---------~~~~~~~~~~ 452 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDR---------NIELDGTLQA 452 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc---------CcccchhHHH
Confidence 344567788777777776431 111122222334445567899999999988775431000 000011111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 003016 316 -VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR---- 390 (857)
Q Consensus 316 -t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~---- 390 (857)
....+-..+...|+++.|...++.....-...+.... ....+.+...+...|++++|...+.+....
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR--------IVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 1222223456789999999999998764212222111 011256677788899999999999887642
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC--C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--
Q 003016 391 GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSK--P-LEITFTGLIISSMDGGHIDDCISIFQHMKDH-- 461 (857)
Q Consensus 391 ~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~---~g~~--p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-- 461 (857)
|. .....+++.+...+...|+++.|...+.+.... .+.. + ....+..+...+...|++++|...+......
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 11 111234555667788999999999998876541 1211 1 2233444555667789999999999887551
Q ss_pred -CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh-----hhHHHHHhcCCHHHH
Q 003016 462 -CEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS-----SMLEASATAHQWEYF 533 (857)
Q Consensus 462 -~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~-----~ll~a~~~~g~~~~a 533 (857)
..+ ....+..+...+...|+.++|.+.+.+...... .......+. ..+..+...|+.+.|
T Consensus 605 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 672 (903)
T PRK04841 605 NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG------------NGRYHSDWIANADKVRLIYWQMTGDKEAA 672 (903)
T ss_pred ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh------------cccccHhHhhHHHHHHHHHHHHCCCHHHH
Confidence 222 233445566677889999999999988865320 001111111 122344557899999
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 003016 534 EYVYKGMALSGCQLDQ---TKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIPH-PLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 534 ~~l~~~m~~~g~~pd~---~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p~-~~~~~~li~~~~~~g~~~~A~~ 605 (857)
...+............ ..+..+..++...|+.++|...++..... |..++ ..+...+-.++.+.|+.++|..
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 673 ANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9887765432111111 11344556678899999999999877653 33332 2355556667788899999999
Q ss_pred HHHHhhhC
Q 003016 606 LINAMAYA 613 (857)
Q Consensus 606 l~~~M~~~ 613 (857)
.+.+....
T Consensus 753 ~L~~Al~l 760 (903)
T PRK04841 753 VLLEALKL 760 (903)
T ss_pred HHHHHHHH
Confidence 99987653
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-08 Score=88.12 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=70.9
Q ss_pred HHHhccCchhhhHhhhhccccccccCcchhhhhhhhhhhccCcccccccccccccccc--------CCCCCC---cCCCc
Q 003016 665 HALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLG--------ADPLPQ---KTDVA 733 (857)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k--------~~~l~~---klaia 733 (857)
|.|..++.+||..+.++ ++...||+|+++.+.|+++++++ +..+.+ |||||
T Consensus 9 h~F~sgd~shp~~~~~~------------------~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAia 70 (116)
T PF14432_consen 9 HSFVSGDRSHPQSELIN------------------KMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIA 70 (116)
T ss_pred EEEEeCCCcCccHHHHH------------------HHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHH
Confidence 88999999999885333 44578999999999999888766 445555 99999
Q ss_pred cccccccCCCCcccc--C-cccccccccccccccCCCCCccccccc
Q 003016 734 VDIDSINHSSLSRQA--D-ADTEMFSKALSYIHSNDRPSNLCIDME 776 (857)
Q Consensus 734 ~~~i~~~~~~~iri~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (857)
||++++ ||. + ..|.|||...+||+--.|+.-++-|..
T Consensus 71 fgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~ 110 (116)
T PF14432_consen 71 FGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSN 110 (116)
T ss_pred hcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCC
Confidence 999999 442 3 579999999999998777777777754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0016 Score=64.50 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
+...|.-+|.+.|+...|..-+++..+.. +.+..+|..+-..|.+.|+.+.|.+-|+...+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-- 98 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----------------PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-- 98 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--
Confidence 45567778999999999999999988863 446778888888899999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.|+.... .|..-..+|..|.+++|...|++....-..+ -..||.-+.-|..+.|+.+.|...|++-..
T Consensus 99 ~p~~GdV-----------LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 APNNGDV-----------LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred CCCccch-----------hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4444332 2777778889999999999998876543222 234577778888889999999999998876
Q ss_pred cCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 425 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 425 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+-...+.-.+.....+.|++-.|...++....+..++..+.-.-|..-.+.|+.+.|-+.=..+.+.-
T Consensus 168 --~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 168 --LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred --hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2233345677788888889999999999999888666888888888888888999888888877777754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.022 Score=65.62 Aligned_cols=402 Identities=12% Similarity=0.016 Sum_probs=245.8
Q ss_pred HhcCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH
Q 003016 165 LSEREMTAKNWK----FVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240 (857)
Q Consensus 165 l~~~~~~~~A~~----l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k 240 (857)
+.-++..+++.- .+++++...++-+...|-.+.-++...|.++.+.+.|+..... .......|+.+-..|+-
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSA 369 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHH
Confidence 444555556543 3455555556678889999999999999999999999987543 22356789999999999
Q ss_pred cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHcCCC-----------------------
Q 003016 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV-TL-GQVGLLKELVKLIERMRQKPS----------------------- 295 (857)
Q Consensus 241 ~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~-~~-~~~g~~~~A~~l~~~m~~~g~----------------------- 295 (857)
+|.-..|..+.+.-... .-.|+..+--.|+. .| -+.+.+++++..-.+.....+
T Consensus 370 ag~~s~Av~ll~~~~~~-~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKK-SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred hccchHHHHHHHhhccc-ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh
Confidence 99999999998876542 11143333333332 23 344666777666655554210
Q ss_pred ----hhhhh--------hh-hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 296 ----KRIKN--------MH-RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 296 ----~~l~~--------m~-~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
.+..+ .+ +-+--.+..|++.-|-++ -|+..++++.|.+..++..+.+-.-+...
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~----------- 515 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKA----------- 515 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHH-----------
Confidence 00000 01 112222345555555444 35667778888888888877654555554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHhc-------------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQ-RGVVGTASVYYEL---ACCLCNNGRWQDAMLVVEKIKSL------------- 425 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~~d~~t~~~l---I~~~~~~g~~~~A~~l~~~m~~~------------- 425 (857)
|.-|.-.+...+++.+|+.+.+...+ .|.- |+.| |..-...++.++|+.....+...
T Consensus 516 -whLLALvlSa~kr~~~Al~vvd~al~E~~~N-----~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~ 589 (799)
T KOG4162|consen 516 -WHLLALVLSAQKRLKEALDVVDAALEEFGDN-----HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE 589 (799)
T ss_pred -HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 47777788888999999999876543 2220 0000 11112234555554444333320
Q ss_pred -------CCC-----CC-c-HHHHHHHHHHHH-c--CCCHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCH
Q 003016 426 -------RHS-----KP-L-EITFTGLIISSM-D--GGHIDDCISIFQHMKDHCEPN------IGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 426 -------~g~-----~p-d-~~t~~~ll~a~~-~--~g~~~~A~~if~~m~~~~~p~------~~~~~~li~~~~~~g~~ 482 (857)
.|. .| + ..|+..+..-.. + .-..+.....+... -.|+ ...|....+.+.+.+..
T Consensus 590 g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 590 GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 010 01 1 112222211111 1 11111111111111 1122 35677788889999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEAS 560 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~ 560 (857)
++|.-.+.+.... .| ....|.-.-..+-..|..++|.+.|..... +.|+.+ ...++-.++.
T Consensus 667 ~~a~~CL~Ea~~~---------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 667 DEARSCLLEASKI---------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred hHHHHHHHHHHhc---------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 9998777776552 24 444555555666777999999999988775 677754 7778888899
Q ss_pred HcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 561 RAGKCHLLEH--AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 561 ~~G~~~~A~~--~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
..|+-.-|.. ++..+.+.+ +.+...|..+-..+-+.|+.+.|.+.|....
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9998877777 888887754 3477899999999999999999999998853
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.016 Score=73.05 Aligned_cols=373 Identities=10% Similarity=0.001 Sum_probs=223.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKL----LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~l----l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...|.+.+|..... ..+ +......+ .......|.+..+...+..+..... .. +.......
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~---~a~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~-~~--~~~l~~~~ 415 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHAL---AAG---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL-LE--NPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHH---HCC---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH-hc--CcchHHHH
Confidence 344445556777776665333 222 22222222 2234445777776666655421100 11 22223344
Q ss_pred HHHHHHcCChhHHHHHHHHhHHcCCC-----CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 235 LAILGKAGRPHEALRIFNLMLEDCNL-----YPDIA--AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 235 i~~y~k~g~~~~A~~vf~~m~~~~gi-----~pd~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...+...|++++|...+........- .+... ....+-..+...|++++|...+++....-
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------- 482 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------------- 482 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Confidence 55566789999999999877542110 11111 12222344567899999999999876531
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHH
Q 003016 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK---PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEA 380 (857)
Q Consensus 308 ~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A 380 (857)
...+ ...++.+...+...|+++.|...+.+.....-. +....+ ++..+...+...|++++|
T Consensus 483 --~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~----------~~~~la~~~~~~G~~~~A 550 (903)
T PRK04841 483 --PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW----------SLLQQSEILFAQGFLQAA 550 (903)
T ss_pred --CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH----------HHHHHHHHHHHCCCHHHH
Confidence 1122 234555666677899999999999888653211 111111 125667788899999999
Q ss_pred HHHHHHHhh----cCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCc--HHHHHHHHHHHHcCCCHHH
Q 003016 381 VAAVRNMEQ----RGVV--G-TASVYYELACCLCNNGRWQDAMLVVEKIKSLR-HSKPL--EITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 381 ~~lf~~m~~----~~~~--~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t~~~ll~a~~~~g~~~~ 450 (857)
...+++... .+.. + ....+..+...+...|++++|...+.+..... ...+. ..++..+...+...|+.+.
T Consensus 551 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 551 YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 999887543 2211 1 23345555666777899999999988765411 11122 2334455667778999999
Q ss_pred HHHHHHHHhh--CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---HhHhhhh
Q 003016 451 CISIFQHMKD--HCEPNIGTV-----NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---EYTYSSM 520 (857)
Q Consensus 451 A~~if~~m~~--~~~p~~~~~-----~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~~t~~~l 520 (857)
|.+.+..... ........+ ...+..+...|+.+.|.+.+....... .... ...+..+
T Consensus 631 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-------------~~~~~~~~~~~~~~ 697 (903)
T PRK04841 631 ARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-------------FANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-------------CccchhHHHHHHHH
Confidence 9999988754 111111111 112344566899999999987754321 1111 1123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 521 LEASATAHQWEYFEYVYKGMALS----GCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~~~----g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
..++...|+.++|...+.+.... |..++. .+...+-.++.+.|+.++|...+.+..+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66778889999999999887753 433332 35556666688999999999999988765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.036 Score=62.12 Aligned_cols=401 Identities=13% Similarity=0.131 Sum_probs=218.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH--
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-- 270 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-- 270 (857)
+-+=++.+...|++++|.+....++..+ +.+...+-.=+-++.+.+++++|+.+.+.-. -..+++..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~----pdd~~a~~cKvValIq~~ky~~ALk~ikk~~-------~~~~~~~~~f 83 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV----PDDEDAIRCKVVALIQLDKYEDALKLIKKNG-------ALLVINSFFF 83 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC----CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-------hhhhcchhhH
Confidence 3344566777899999999999987653 2356666666667888999999996654432 22233333
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 271 AVTLG--QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 271 i~~~~--~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
=.+|| +.+..++|+..+. | ..+ |..+...--..|.+.|++++|+.+|+.+.+.+..-
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~---------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----G---------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----c---------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 44554 6789999999988 2 333 33355555566889999999999999998876432
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---ASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d---~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
-..-. + ..|+.+-. +..+ +.|.....+|+ ...||. .+.+...|++.+|++++....+
T Consensus 144 ~d~~~----r-------~nl~a~~a-------~l~~-~~~q~v~~v~e~syel~yN~-Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 144 QDEER----R-------ANLLAVAA-------ALQV-QLLQSVPEVPEDSYELLYNT-ACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHH----H-------HHHHHHHH-------hhhH-HHHHhccCCCcchHHHHHHH-HHHHHhcccHHHHHHHHHHHHH
Confidence 21111 0 12221111 1111 12333334443 123443 4667889999999999988732
Q ss_pred c------CCCCCc--HH-----HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHH-HHH
Q 003016 425 L------RHSKPL--EI-----TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI----GTVNAMLKVYSRNDMFS-KAK 486 (857)
Q Consensus 425 ~------~g~~pd--~~-----t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~----~~~~~li~~~~~~g~~~-~A~ 486 (857)
. .+-.-+ .. .-..+.-.+-..|+.++|..++....+...+|. +.-|.|+.+-....-++ .++
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHH
Confidence 0 011111 11 112333345578999999999999887544444 22344443322211111 111
Q ss_pred HHHHHHHHcCCCC---------cccc----------CC----------CCCCCCCCHhHhhhhHHHHHhc--CCHHHHHH
Q 003016 487 ELFEETTRANSSG---------YTFL----------SG----------DGAPLKPDEYTYSSMLEASATA--HQWEYFEY 535 (857)
Q Consensus 487 ~lf~~M~~~g~~~---------~~~~----------~~----------~~~~~~pd~~t~~~ll~a~~~~--g~~~~a~~ 535 (857)
..|+......... |..+ .+ .-.+..| ...+.+++..+... .....+..
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e 362 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIE 362 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1111110000000 0000 00 0011223 23445555554443 23455555
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003016 536 VYKGMALSGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFD--------SLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 536 l~~~m~~~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~--------~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~ 605 (857)
++....+ + .|.. .+.-..+......|+++.|.+++. .+.+.+..| .+-.+++..+.+.++-+-|-.
T Consensus 363 ~L~~~~~-~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 363 LLLQFAD-G-HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHHhc-c-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHH
Confidence 5555443 2 3333 344444455678999999999998 666655555 444556677777766544544
Q ss_pred HHHHhhhC--CCccCH----HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 606 LINAMAYA--PFHITE----RQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 606 l~~~M~~~--~~~p~~----~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
++.+.... ...+.. .+|.-+..---++|+.+++..+++++.+..
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 44443210 111111 233333333446699999999999998753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0015 Score=78.88 Aligned_cols=242 Identities=8% Similarity=0.017 Sum_probs=181.9
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003016 178 VRIMNQSGLMFTE-GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK-RDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (857)
Q Consensus 178 ~~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~-~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 255 (857)
|.++.++. ||. ..|...+.-....++++.|+++++++++.--. ...--.-+|.++++.-.--|.-+...++|++..
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444433 555 47888999999999999999999998765311 111124689999998888898889999999998
Q ss_pred HcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003016 256 EDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (857)
Q Consensus 256 ~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~ 334 (857)
+- -| -..|..|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+..+-+.|.
T Consensus 1525 qy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1525 QY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred Hh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHH
Confidence 73 34 446888999999999999999999999987 4567788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHH
Q 003016 335 WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 414 (857)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~ 414 (857)
.++.+.++.=.+-...-+ ..-.+.+-.++|+.+.++.+|+........ -...|+..|..-.++|+.+.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~-----------IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEF-----------ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHHHHHHhhcchhhhHHH-----------HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHH
Confidence 999999876333223322 145666677899999999999988765433 23459999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcH--HHHHHHHHHHHcCCCHHHHHHH
Q 003016 415 AMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISI 454 (857)
Q Consensus 415 A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~i 454 (857)
+..+|++... .++.|-. +.|.--|..=-..|+-..+..+
T Consensus 1653 vR~lfeRvi~-l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1653 VRDLFERVIE-LKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHh-cCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999988 5666543 3455555544444554444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.05 Score=62.83 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhhhCCCccCH----HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 599 NYEKAVALINAMAYAPFHITE----RQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 599 ~~~~A~~l~~~M~~~~~~p~~----~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
+..+.+.-...|..+++-|+. ..|..|+..+....++..|-+.++.|..+.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 555566666778888877765 478889999999999999999999998664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=76.82 Aligned_cols=127 Identities=15% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
...+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .+.+.+|..+|+++.. ...++..+.+.+..
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHH
Confidence 345566666666666666666666543 222 22233333222 2356677777777654 34456666666666
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF-SKAKELFEETTRAN 496 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~lf~~M~~~g 496 (857)
++...|++++|.+++.+....-+.+..+...+|.+....|+. +.+.+++.++....
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 677777777777776666554444555666666666666665 55666666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.036 Score=61.47 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--Cc----HHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK--PL----EITFTGL 438 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~--pd----~~t~~~l 438 (857)
..|.++.-+..+++.|.+-+....+.. .+..-++..-.+|...|++.+....-..-.+ .|.. -+ ...+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHHHHHHHHHHHHHHHHh
Confidence 445555556666666666666655544 3333344555556666655554444333222 1100 00 1112222
Q ss_pred HHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-H
Q 003016 439 IISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-T 516 (857)
Q Consensus 439 l~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t 516 (857)
-.+|.+.++++.|...|..... +..|+. ..+....++++...+...-. .|+.. -
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~---------------~pe~A~e 360 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI---------------NPEKAEE 360 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh---------------ChhHHHH
Confidence 2345555666666666666544 222222 22333344555544444332 24331 1
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 003016 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAI 595 (857)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~ 595 (857)
...--..+.+.|++..|...|.++++.. +-|...|..---+|.+.|.+..|..=-+...+. .|+ ...|.-=..++.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 1122455777899999999999998865 445668888888889999998888876666554 232 223333233333
Q ss_pred HcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 596 VQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
...+++.|++.|.+-+. ..|+..-+..-+.-|..
T Consensus 438 ~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 34678888888887653 34666655555555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.047 Score=64.41 Aligned_cols=259 Identities=13% Similarity=0.137 Sum_probs=142.5
Q ss_pred ccCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH----------------------------
Q 003016 149 KRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTE-GQMLKLLKG---------------------------- 199 (857)
Q Consensus 149 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a---------------------------- 199 (857)
..-..|++.....+.++-..+...+-+++++...-..-..+. ..+..|+-.
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHH
Confidence 344567777777778888888888888888877633211111 111111111
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~ 279 (857)
+...+-.++|..+|+.. ..+....+.||. .-+.++.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1058 ai~~~LyEEAF~ifkkf--------~~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF--------DMNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HhhhhHHHHHHHHHHHh--------cccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCc
Confidence 11112223333333321 112223333332 1233444444333332 34567777777777777
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 359 (857)
..+|.+-|-+. -|+..|.-++..+.+.|.|++-...+...++..-.|...
T Consensus 1120 v~dAieSyika---------------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--------- 1169 (1666)
T KOG0985|consen 1120 VKDAIESYIKA---------------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--------- 1169 (1666)
T ss_pred hHHHHHHHHhc---------------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch---------
Confidence 77777665432 356678888888888888888888777777777777766
Q ss_pred HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003016 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 439 (857)
Q Consensus 360 ~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 439 (857)
+.||-+|++.+++.+.+++.. -|+..-...+..-|...|.++.|.-+|.... -|..|.
T Consensus 1170 -----~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La 1227 (1666)
T KOG0985|consen 1170 -----SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLA 1227 (1666)
T ss_pred -----HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHH
Confidence 568888888888777665542 2344344455555666666666655554332 244444
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~ 482 (857)
..+...|.+..|...-+.. .++.||--+-.+|...+.+
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhh
Confidence 4444555555444433322 3455555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.065 Score=59.49 Aligned_cols=376 Identities=11% Similarity=0.093 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
-|+.+|+.||.-+... .+++++..++++.. -++-....|..-|.+-.+..+++....+|.+....-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv----------- 83 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV----------- 83 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------
Confidence 4888999999877655 88999999999876 233356788888999889999999999998887642
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCChHHHH----HHHHHH-HHcCCCCCHHHHHHHHHHHHHhHHHHHHH---------H
Q 003016 306 WDPVLEPDLVVYNAVLNACVP-SHQWKGVF----WVFKQL-RKSGLKPSAATYGLAMESYRRCLLKVLVR---------A 370 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~-~g~~~~A~----~l~~~m-~~~g~~pd~~t~~~ll~~~~~~~~~~Li~---------~ 370 (857)
-+...|..-|+---+ .|+...+. +.|+.. .+.|+.+-...+ |+.-|+ -
T Consensus 84 ------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~si-----------W~eYi~FL~~vea~gk 146 (656)
T KOG1914|consen 84 ------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSI-----------WDEYINFLEGVEAVGK 146 (656)
T ss_pred ------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchh-----------HHHHHHHHHccccccc
Confidence 346667766654322 33333322 233332 344544443332 444443 3
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH------HHH-------HHCCCHHHHHHHHHHHHhc-CCCCCcHHH--
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELA------CCL-------CNNGRWQDAMLVVEKIKSL-RHSKPLEIT-- 434 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI------~~~-------~~~g~~~~A~~l~~~m~~~-~g~~pd~~t-- 434 (857)
|....+++..+++++++...-+..=...|+-.. +-. -+...+..|..++++.+.. .|..-+..+
T Consensus 147 ~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 147 YEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 444556777788888776543322122233221 100 0112344455554444320 111111000
Q ss_pred -------------HHHHHH----------------------------H---------------------HHcCCC-----
Q 003016 435 -------------FTGLII----------------------------S---------------------SMDGGH----- 447 (857)
Q Consensus 435 -------------~~~ll~----------------------------a---------------------~~~~g~----- 447 (857)
|-.+|. . +...|+
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 111111 0 111222
Q ss_pred --HHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhH
Q 003016 448 --IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRN---DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521 (857)
Q Consensus 448 --~~~A~~if~~m~~~-~~p~~~~~~~li~~~~~~---g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll 521 (857)
-+++..+++....+ ...+..+|..+.+-=-.. ...+.....+++..... ...|+ .+|...+
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~------------~~~~t-Lv~~~~m 373 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE------------DIDLT-LVYCQYM 373 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh------------ccCCc-eehhHHH
Confidence 23333344333331 111222222222110000 12333444444444322 13333 4577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q 003016 522 EASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 522 ~a~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~ 599 (857)
+.-.+...++.|..+|.+..+.+..+ +..++++++.-|| .++..-|.++|+.=..+ |- ++.--...++-+.+-++
T Consensus 374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCc
Confidence 88888889999999999999988888 6678888887665 46778899999875543 43 23444566777778899
Q ss_pred HHHHHHHHHHhhhCCCccCH--HHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 600 YEKAVALINAMAYAPFHITE--RQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 600 ~~~A~~l~~~M~~~~~~p~~--~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
-..|..+|++....++.|+. .+|...|.-=..-|+...+.++-+.+...
T Consensus 451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999998887666666 68999999889999999999988877744
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0048 Score=69.66 Aligned_cols=329 Identities=13% Similarity=0.160 Sum_probs=158.2
Q ss_pred cCCChHHHHHHHHHHHH----------CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 167 EREMTAKNWKFVRIMNQ----------SGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~----------~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.++.+++|+.+|.++.+ .|. |-.. .-.+.++++...|.-+.|-++-.. .+ | --+.|
T Consensus 556 eqn~te~aigmy~~lhkwde~i~lae~~~~-p~~eklk~sy~q~l~dt~qd~ka~elk~s------dg---d---~laai 622 (1636)
T KOG3616|consen 556 EQNATEEAIGMYQELHKWDEAIALAEAKGH-PALEKLKRSYLQALMDTGQDEKAAELKES------DG---D---GLAAI 622 (1636)
T ss_pred hcccHHHHHHHHHHHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHHHhcCchhhhhhhccc------cC---c---cHHHH
Confidence 45566777777766542 232 3222 335567777777877777665321 11 2 12457
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--------Chh---hhhhhhh
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP--------SKR---IKNMHRK 304 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~---l~~m~~k 304 (857)
..|.+.|.+..|.+.-..=.+ +..|......+..++.+...++.|-.+|+++..-. +++ .+.+.|-
T Consensus 623 qlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 788888888877665432211 12454444444445444444444444444432211 000 0111111
Q ss_pred cCCCCCCCCHHHH--------------H------H---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 305 NWDPVLEPDLVVY--------------N------A---VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRR 361 (857)
Q Consensus 305 ~f~~~~~pd~~t~--------------~------~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 361 (857)
.|...+..=...| | . .|.+.....+|.+|+.+++.+........ |
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~---y--------- 767 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASG---Y--------- 767 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccc---c---------
Confidence 1111000000001 0 1 11222334455555555554444322111 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
|.-+.+.|+..|+++.|.++|-+-.. ++-.|..|.++|+|++|.++-.+. .|.......|.+-..-
T Consensus 768 --y~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 768 --YGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAED 833 (1636)
T ss_pred --chHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHh
Confidence 24555666666666666666654321 445566666666666666654443 2222233334444444
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhh
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSS 519 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ 519 (857)
.-+.|++.+|.+++-.+.. |+. -|.+|-+.|..+..+++..+- .||. .|-..
T Consensus 834 ldehgkf~eaeqlyiti~~---p~~-----aiqmydk~~~~ddmirlv~k~------------------h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGE---PDK-----AIQMYDKHGLDDDMIRLVEKH------------------HGDHLHDTHKH 887 (1636)
T ss_pred HHhhcchhhhhheeEEccC---chH-----HHHHHHhhCcchHHHHHHHHh------------------ChhhhhHHHHH
Confidence 4556666666666544443 433 355666666666666665542 1322 23334
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 520 MLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 520 ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
+..-+-..|++..|+.-|-+.. -|.+-+++|-.++.+++|.++-
T Consensus 888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 4444555566666665554432 2445556666666666665554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.055 Score=64.00 Aligned_cols=398 Identities=10% Similarity=0.020 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003016 171 TAKNWKFVRIMNQSGLMFTE-GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (857)
Q Consensus 171 ~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~ 249 (857)
...|+..|-+-.+. .|+- ..|..|-..|+..-+...|.+.|...... +..+...+.+..+.|++...++.|..
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHH
Confidence 44444444433332 2332 36667777777777788888888887654 33477788888888888888888888
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~ 329 (857)
+.-...+......-...|...--.|...++...|..-|+...+. -+.|...|..+..+|...|.
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCc
Confidence 84444332111111223334334456677777777777777664 24577888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH---------------------HhHHHHHHHHHHHc-------CCH--
Q 003016 330 WKGVFWVFKQLRKSGLKPSAA--TYGLAMESYR---------------------RCLLKVLVRAFWEE-------GKI-- 377 (857)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~---------------------~~~~~~Li~~y~k~-------g~~-- 377 (857)
+..|.++|.+.... .|+.. .|-.++--|. ....+.|...+.++ |-.
T Consensus 612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 88888888776543 34322 1111111111 11112222222111 222
Q ss_pred -----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHH---HCC--CHH-HHHHHHH-HHHhcCCCCCc--------------
Q 003016 378 -----NEAVAAVRNMEQRGVVGTASVYYELACCLC---NNG--RWQ-DAMLVVE-KIKSLRHSKPL-------------- 431 (857)
Q Consensus 378 -----~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~---~~g--~~~-~A~~l~~-~m~~~~g~~pd-------------- 431 (857)
+.+.+.|.-........+...|-.+-.+|. +-. .+. ..+.+|. +... .+.-|+
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~-~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK-TGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCcchhHHHHHHHHhhHH
Confidence 222222222222222223333333322221 111 000 0011111 1111 111111
Q ss_pred ------HHHHHHHHHHHHc----C---C-CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 432 ------EITFTGLIISSMD----G---G-HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 432 ------~~t~~~ll~a~~~----~---g-~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
..+|..+...|.+ + + +...|...+....+-+..+..+||+|--. ...|.+.-|..-|-+-....
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 1122222211111 1 1 22345555555555455677777776554 55566776766666554432
Q ss_pred CCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH--
Q 003016 498 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDS-- 574 (857)
Q Consensus 498 ~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~-- 574 (857)
+....+|..+-.-|....+++.|...|...+. +.|+ ...+-..-...-..|+.-++..+|..
T Consensus 847 -------------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 847 -------------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred -------------ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 23566777777777777888888888876654 3443 33333332223455666777777765
Q ss_pred HHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 575 LLE--AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 575 m~~--~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
... .|--|+..-|-+........|+.++-+...+..
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 221 244566666666666666667766655544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0024 Score=71.09 Aligned_cols=259 Identities=13% Similarity=0.124 Sum_probs=142.4
Q ss_pred HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
+.+.|++.+|.-.|+...+.. +-+...|--|-...+..++-..|+..+.+..+. .|+....
T Consensus 295 lm~nG~L~~A~LafEAAVkqd----------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~Nlea- 355 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD----------------PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEA- 355 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC----------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHH-
Confidence 457788888888888887763 447788888888888888888888888877764 5665443
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 433 (857)
.-+|.-.|...|.-.+|...++.-...... |..+..+ ...++.. .+
T Consensus 356 ----------LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~---------------~~--- 401 (579)
T KOG1125|consen 356 ----------LMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFE---------------NT--- 401 (579)
T ss_pred ----------HHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhcccc-Ccccccc---------------CC---
Confidence 256667788888888888888765443221 1111100 0000000 00
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~ 511 (857)
....+...+....++|-.+.. +..+|..+++.|--.|--.|.+++|.+.|+.... ++
T Consensus 402 ------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---------------v~ 460 (579)
T KOG1125|consen 402 ------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---------------VK 460 (579)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---------------cC
Confidence 011111122223333433333 2234555555555556666666666666665554 33
Q ss_pred C-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---C------CC
Q 003016 512 P-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLE---A------GE 580 (857)
Q Consensus 512 p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~---~------gi 580 (857)
| |...||-|-..++...+.++|...|.+.++ ++|+-+ +...|-..|...|.+++|.+.|-.... . +-
T Consensus 461 Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 461 PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 5 444566666666666666666666666554 445422 333344445556666666655543322 1 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.++...|.+|=.++...++.+-+.+...
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 1234566666656666666665544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0006 Score=77.49 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=171.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...+.+.|....|..+|++... |.-.|-+|+..|+..+|..+..+-.+ -+||..-|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 5678889999999999999998753 88899999999999999988877654 47899999999999888
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEA 523 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a 523 (857)
...++.|.++++....+ .-..+-....+.++++++.+.|+.-.+.+ | -..||-..-.+
T Consensus 470 ~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---------------plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN---------------PLQLGTWFGLGCA 528 (777)
T ss_pred hHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC---------------ccchhHHHhccHH
Confidence 88899999999887652 11122222234789999999999876644 4 44678777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 602 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~ 602 (857)
.-+.++++.|.+.|..-.. ..||. ..||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+-....-|.+++
T Consensus 529 ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 7788999999999987775 57775 489999999999999999999999998876 4455667777777888899999
Q ss_pred HHHHHHHhhhC
Q 003016 603 AVALINAMAYA 613 (857)
Q Consensus 603 A~~l~~~M~~~ 613 (857)
|++.+.+|...
T Consensus 606 a~~A~~rll~~ 616 (777)
T KOG1128|consen 606 AIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0074 Score=61.71 Aligned_cols=358 Identities=14% Similarity=0.082 Sum_probs=166.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
|+.....-+.+++..+.+...++.|.+++..-.+.. +.+....+.|-..|-...++..|-..++++... .|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~ 77 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPEL 77 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHH
Confidence 333333344555555555566666666665544321 125555566666666666666666666666542 3444
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 003016 265 AAYHSV-AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC--VPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 265 ~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~--~~~g~~~~A~~l~~~m~ 341 (857)
.-|... ...+-+.+.+..|+.+...|... |+...-..-+.+. -..+++..+..+.++..
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 333321 23444556666666666666431 2221111112221 23556666666665554
Q ss_pred HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003016 342 KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-GVVGTASVYYELACCLCNNGRWQDAMLVVE 420 (857)
Q Consensus 342 ~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~ 420 (857)
..| +..+. +..--...+.|+.++|.+-|+...+- |..| ...||.-+.- .+.|+++.|++...
T Consensus 140 ~en---~Ad~~------------in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 140 SEN---EADGQ------------INLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred CCC---ccchh------------ccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 322 11111 22222334666677777666665543 3333 3335544433 34466666666666
Q ss_pred HHHhcCCCCCcHHHH----HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 421 KIKSLRHSKPLEITF----TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 421 ~m~~~~g~~pd~~t~----~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++.+ +|++-.+..- +-.++ ...+..-..++.. --+..+|.-...+.+.|+++.|.+-+-.|.-..
T Consensus 203 EIie-RG~r~HPElgIGm~tegiD----vrsvgNt~~lh~S------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIE-RGIRQHPELGIGMTTEGID----VRSVGNTLVLHQS------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHH-hhhhcCCccCccceeccCc----hhcccchHHHHHH------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 6665 4443211000 00000 0000000000000 011223333334456777777777777775443
Q ss_pred CCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 497 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 497 ~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
.-..|.+|...+.-.=. .+++..+.+-+.-+.... +....||..++-.||+..-++.|-.++-+=.
T Consensus 272 ------------E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 272 ------------EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ------------cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 13346666655432211 133444444344444321 2234577777777888777777777765432
Q ss_pred HCCC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Q 003016 577 EAGE-IPHPLFFTEMLIQAIVQ-SNYEKAVALINAM 610 (857)
Q Consensus 577 ~~gi-~p~~~~~~~li~~~~~~-g~~~~A~~l~~~M 610 (857)
..-. -.+...|+ |++++... -..++|++=++.+
T Consensus 338 ~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 338 HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 2111 11333333 34444443 4556665544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0022 Score=66.50 Aligned_cols=96 Identities=9% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN---IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
..+..+...+...|+++.|...|+.+....+.+ ...+..+..+|.+.|++++|...++++.+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------------- 100 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------------- 100 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------------
Confidence 344555555666666666666666665522222 2456667777888888888888888887754
Q ss_pred CCCCHh----HhhhhHHHHHhc--------CCHHHHHHHHHHHHHc
Q 003016 510 LKPDEY----TYSSMLEASATA--------HQWEYFEYVYKGMALS 543 (857)
Q Consensus 510 ~~pd~~----t~~~ll~a~~~~--------g~~~~a~~l~~~m~~~ 543 (857)
|+.. ++..+-.++... |+.+.|.+.|+.+.+.
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4222 333333344433 6788888888888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.14 Score=60.73 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=163.4
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~---~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
++...+....+.+.+....+.|..+ .+......|- ...|...--.|...++...|+.-|+..++. .+.|..
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I--~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n 597 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEI--CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYN 597 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHH--HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHH
Confidence 4556666777777777777777666 2221111111 112222333355567777777777777653 445889
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHcCC------Chhh---
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA--VTLGQVGLLKELVKLIERMRQKP------SKRI--- 298 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li--~~~~~~g~~~~A~~l~~~m~~~g------~~~l--- 298 (857)
.|..|..+|..+|++..|.++|++...- .|+ .+|...- ..-+..|.+.+|+..+......- .+.+
T Consensus 598 ~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 598 LWLGLGEAYPESGRYSHALKVFTKASLL---RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHHhcCceehHHHhhhhhHhc---CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999988762 243 2333322 23456788999988887765542 0111
Q ss_pred -hhh----hhhcCCC-------------------CCCCCHHHHHHHHHHHHhcCChH------HHHH-HHHHHHHcCCCC
Q 003016 299 -KNM----HRKNWDP-------------------VLEPDLVVYNAVLNACVPSHQWK------GVFW-VFKQLRKSGLKP 347 (857)
Q Consensus 299 -~~m----~~k~f~~-------------------~~~pd~~t~~~li~~~~~~g~~~------~A~~-l~~~m~~~g~~p 347 (857)
+.+ +-.-|.. ...-|...|-.+-.+|.-.-+.+ .... ++.+....+..|
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~ 753 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALK 753 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCc
Confidence 100 0000000 00122222322222221100000 0000 111122233332
Q ss_pred CHHHHHHHHHHHH--------HhHHHHHHHHHHH----c----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC
Q 003016 348 SAATYGLAMESYR--------RCLLKVLVRAFWE----E----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 411 (857)
Q Consensus 348 d~~t~~~ll~~~~--------~~~~~~Li~~y~k----~----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~ 411 (857)
+....-.....+. ...|..|...|.+ + .+...|...+..-.+.. .-+..+||.|--. ...|.
T Consensus 754 ~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 754 KNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred chhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccch
Confidence 2221000000000 2333333333333 1 12234555555443322 1234456655333 33344
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 412 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 412 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
+.-|..-|-+-.. -.+....+|..+-..|....+++.|...|.....-.+.|...|--+-...-..|+.-++..+|..
T Consensus 832 va~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4444443333222 22334556666666677788888888888877765555667776666666667777777777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0032 Score=65.36 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH---HHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI---GTVN 470 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~---~~~~ 470 (857)
....+..+...+.+.|++++|...|++......-.|. ..++..+..++...|++++|...++.+.+..+.+. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456777888899999999999999998762211121 23567778888999999999999999987322222 2455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 471 AMLKVYSRN--------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 471 ~li~~~~~~--------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.+..++.+. |+.++|.+.|+.+.... |+.. .+..+.... . .... ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------p~~~~~~~a~~~~~-~---~~~~------~~ 166 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---------------PNSEYAPDAKKRMD-Y---LRNR------LA 166 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---------------CCChhHHHHHHHHH-H---HHHH------HH
Confidence 555555554 78999999999998855 6542 222221111 1 0100 00
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-G-EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-g-i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
.....+...|.+.|++++|...++...+. . -+.....|..+..++...|++++|...++.+...
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01124445688999999999999998875 2 2224578889999999999999999999888543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0021 Score=73.18 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=181.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+-...+|-...=..+...+...|-...|..+|+++.. |.-.|.+|+..|+...|..+..
T Consensus 390 ya~~lpp~Wq~q~~laell~slGitksAl~I~Erlem---------------------w~~vi~CY~~lg~~~kaeei~~ 448 (777)
T KOG1128|consen 390 YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------------------WDPVILCYLLLGQHGKAEEINR 448 (777)
T ss_pred ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------------------HHHHHHHHHHhcccchHHHHHH
Confidence 3334455444445566677888999999999988753 5788889999999999999998
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
+-.++ .||...|..+.+......-+++|.++++...... ...++.+ ....++++++.+.|+.-.+--+--
T Consensus 449 q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-----~r~~~~~---~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 449 QELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-----QRSLALL---ILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred HHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-----HHhhccc---cccchhHHHHHHHHHHHhhcCccc
Confidence 87774 5777788888888888888999999998765510 0111111 123689999999998877644456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
..+|-.+-.+..+.+++..|.+.|..-.. ..||. ..||.+-.+|.+.++-.+|...+.+..+.+
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvt---------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVT---------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhh---------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 78899999999999999999999998876 55865 589999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHPLFFTEMLIQAI 595 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-i~p~~~~~~~li~~~~ 595 (857)
.. +...+-..+....+.|.+++|++.+.++.+.. ...|..+-..++....
T Consensus 584 ~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 584 YQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred CC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 43 33344444555578899999999999887652 1224455555544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.12 Score=55.62 Aligned_cols=305 Identities=8% Similarity=-0.006 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 311 EPDLVVYNAVLNACVP--SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.|+..+....|.++++ .++...+...+-.+.....-|+.+.. ..++.+.|...|+..+|...|+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-----------l~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-----------MMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-----------HHHHhhhhhhhcCchHHHHHHHHHh
Confidence 3333344444555444 45555666666666555555555544 3889999999999999999999876
Q ss_pred hcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH
Q 003016 389 QRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 389 ~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~ 466 (857)
-.+.- -....|.. .+.+.|+.++...+...+... ..-...-|..-........+++.|..+-++..+--+.++
T Consensus 260 ~~dpy~i~~MD~Ya~---LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAV---LLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred hCChhhhhhHHHHHH---HHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 54321 11112322 246778888888887777651 111122222223333456677777777776665333445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
..|-.--.++...|+.++|.--|+..+. +.| +...|..++.+|.-.|...+|.-+-+...+. +
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~---------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM---------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh---------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 5554445567788999999999998877 445 7789999999999999999998877766542 2
Q ss_pred CCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHH
Q 003016 546 QLDQTKHAWLL-VEA-SRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQW 622 (857)
Q Consensus 546 ~pd~~t~~~Ll-~~~-~~~G~~~~A~~~~~~m~~~gi~p~~-~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~ 622 (857)
.-+..+.+.+- ..| -....-++|..+++.-.. +.|+. ..-+.+...|...|..++++.++++-. ...||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHH
Confidence 22333332221 111 122233677777776554 44543 345556667778899999999999865 567888877
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 623 TELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 623 ~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..|-.-......++++..-+......+..
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77777777777777777766666544433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.027 Score=57.72 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=193.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
-+++++..+.+..++..|.+++..-.+.. +.+....+.+-.+|-...++..|-..++++-..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~----------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-- 73 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS----------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-- 73 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 46677777788889999999988776652 447777888888889999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.|...-|.. --....-+.+.+.+|+++...|.+..-.-+ .+...-....-+.+++-.+..++++...
T Consensus 74 ~P~~~qYrl-----------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~-~~lqLqaAIkYse~Dl~g~rsLveQlp~- 140 (459)
T KOG4340|consen 74 HPELEQYRL-----------YQAQSLYKACIYADALRVAFLLLDNPALHS-RVLQLQAAIKYSEGDLPGSRSLVEQLPS- 140 (459)
T ss_pred ChHHHHHHH-----------HHHHHHHHhcccHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcccccCcchHHHHHhccC-
Confidence 565555521 122344567888999999998876421100 0010001112345677777777766542
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~ 504 (857)
. -+..+.+..-....+.|+.+.|.+-|+...+ +--.....||.-+.. .+.|+...|++...++.+.|....+-+.
T Consensus 141 e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 141 E---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred C---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 1 1222333332334578999999999999987 333345567766554 4668899999999999999855444332
Q ss_pred CCCCCCCCCHhH--------hhhhHHH-------HHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003016 505 GDGAPLKPDEYT--------YSSMLEA-------SATAHQWEYFEYVYKGMAL-SGCQLDQTKHAWLLVEASRAGKCHLL 568 (857)
Q Consensus 505 ~~~~~~~pd~~t--------~~~ll~a-------~~~~g~~~~a~~l~~~m~~-~g~~pd~~t~~~Ll~~~~~~G~~~~A 568 (857)
-+-..-.||+.+ -+.++.+ +.+.|+.+.|.+-+..|-- .....|++|...+.-. -..|++.+.
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 111111223221 2233333 3455888888888877742 2344566655443221 123445555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 569 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 569 ~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+-+.-+...+- -...||..++-.||+...++.|-+++-+=
T Consensus 296 ~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 296 FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 555555555422 23589999999999999999998887664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.1e-05 Score=52.45 Aligned_cols=35 Identities=20% Similarity=0.493 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0038 Score=63.25 Aligned_cols=167 Identities=14% Similarity=0.021 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
.|.......+-..+-..|+-+.+..+...... ....|..+.+.++....+.|++..|...|++... .-++|...
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~ 136 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI----AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEA 136 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc----cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhh
Confidence 34333334455556666776666666554322 2233666777778888888888888888888776 45677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.+--+|.+.|++++|..-|.+..+. ..-+...+|.|.-.+.-.|+.+.|..++......+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L----------------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL----------------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh----------------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 888888888888888888888887764 2335566777777777788888888888877766543
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
...+- ..|.......|++++|..+-..-.
T Consensus 201 d~~v~-------------~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVR-------------QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHH-------------HHHHHHHhhcCChHHHHhhccccc
Confidence 33332 567777777888888877765443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.7e-05 Score=51.24 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+||+||.+|++.|++++|.++|.+|.+.|
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 379999999999999999999999999999
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.8e-05 Score=51.03 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.054 Score=58.66 Aligned_cols=214 Identities=9% Similarity=-0.035 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG-KINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g-~~~~A~~lf~~m~~~~~~~ 394 (857)
++..+-..+...+..++|+.+..++++. .|+..|. |+..-.++.+.| .+++++..++++.+.+..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yta-----------W~~R~~iL~~L~~~l~eeL~~~~~~i~~npk- 104 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTV-----------WHFRRLCLEALDADLEEELDFAEDVAEDNPK- 104 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-
Confidence 3444555566678889999999998864 5776664 565555666667 679999999999887654
Q ss_pred CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRW--QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~--~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
+..+|+.--..+.+.|+. ++++.+++.+.+ .-.-|..+|+..--.+.+.|.++++.+.++.+.+.-..|...|+..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 334577665556666763 678888888876 2345667788888888888999999999999988656778888877
Q ss_pred HHHHHhc---CC----HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc----CCHHHHHHHHHHH
Q 003016 473 LKVYSRN---DM----FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA----HQWEYFEYVYKGM 540 (857)
Q Consensus 473 i~~~~~~---g~----~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~----g~~~~a~~l~~~m 540 (857)
...+.+. |. .+++++...++.... | |...|+.+...+... +...+|...+.+.
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~---------------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN---------------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhC---------------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 7666554 22 246777777777643 6 667888888877773 3445677777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHH
Q 003016 541 ALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 541 ~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
.+.+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6532 2234566677777764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.056 Score=58.56 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~ 274 (857)
+-..+...+..++|+.+.+.++...+. +..+|+.--.++.+.| .+++++..++.+.+. -+.+..+|+.--..+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 333344455566666666666553221 4445555444455555 356666666665542 223444555444444
Q ss_pred HhcCCH--HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 275 GQVGLL--KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 275 ~~~g~~--~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
.+.|.. ++++.+++.+.... ..|..+|+...-++...|+++++++.+.++++.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d----------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD----------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 444432 44555555555432 3455566665555555666666666666665554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0074 Score=67.31 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=172.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHH
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHID 449 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~ 449 (857)
+.+.|++.+|.-.|+.....+.. +...|--|-..-..+++-..|+..+.+..+ +.|+ ....-+|--.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHH
Confidence 34667777777777776666532 556677777777788887778777777765 3343 455667777777777777
Q ss_pred HHHHHHHHHhh-C-----CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhh
Q 003016 450 DCISIFQHMKD-H-----CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 520 (857)
Q Consensus 450 ~A~~if~~m~~-~-----~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~l 520 (857)
.|...++.-.. + .. ++...-+. ..+.....+....++|-++.... +.++|......|
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~------------~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL------------PTKIDPDVQSGL 436 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC------------CCCCChhHHhhh
Confidence 77777766533 1 00 01110000 22333445667777888777654 134666677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 003016 521 LEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQS 598 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~-~~~~~li~~~~~~g 598 (857)
---|-..|.+++|...|+..+. +.|+. .+||-|-..++...+.++|...|++..+ +.|+- .++..|-..|...|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhh
Confidence 7778888999999999999886 66764 5999999999999999999999999987 45653 45666788899999
Q ss_pred CHHHHHHHHHH---hhhCC------CccCHHHHHHHHHHhhhccCHHHHHHH
Q 003016 599 NYEKAVALINA---MAYAP------FHITERQWTELFESNEDRISRDKLEKL 641 (857)
Q Consensus 599 ~~~~A~~l~~~---M~~~~------~~p~~~~~~~Ll~a~~~~g~~e~~~~l 641 (857)
.+++|...|-. |...+ -.++..+|.+|=.+..-.+..+.+.+.
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99999988766 43331 223456888888777777776655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.086 Score=58.11 Aligned_cols=209 Identities=10% Similarity=0.031 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 003016 375 GKINEAVAAVRNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~--~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 452 (857)
.++.++...-+.|+..+ -.|+...+...+.+.........+-.++ .+..+. .-...-|..-+ .+...|.+++|+
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~ 326 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSKR--GGLAAQYGRAL-QTYLAGQYDEAL 326 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhCc--cchHHHHHHHH-HHHHhcccchHH
Confidence 44556666666666433 2344444555555444333333332222 222211 11112233322 344568888888
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHH
Q 003016 453 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWE 531 (857)
Q Consensus 453 ~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~ 531 (857)
..++.+....+.|...+....+.+.+.|+..+|.+.++++... .|+ ...+-.+-.++...|+..
T Consensus 327 ~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------------~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---------------DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHhcCChH
Confidence 8888887777777888888888888888888888888888874 376 344556667788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+|..+++..... .+-|+..|..|-.+|...|+..++.....+ ++...|+++.|+.++....
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 888888877653 355677888888888888887777665543 3445678888887777764
Q ss_pred hCCCccCHHHH
Q 003016 612 YAPFHITERQW 622 (857)
Q Consensus 612 ~~~~~p~~~~~ 622 (857)
+. ++++..+|
T Consensus 453 ~~-~~~~~~~~ 462 (484)
T COG4783 453 QQ-VKLGFPDW 462 (484)
T ss_pred Hh-ccCCcHHH
Confidence 43 33444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.039 Score=65.90 Aligned_cols=193 Identities=14% Similarity=0.036 Sum_probs=127.6
Q ss_pred HHHHHhcCCHHH-HHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003016 197 LKGLGDKGSWRQ-AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (857)
Q Consensus 197 l~a~~~~g~~~~-A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~ 275 (857)
=.+++..|.-++ +.+++.+.. -++...++...+.+++--...... .+..++..+-.|.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 35 EAALAEPGESEEAGRELLQQAR---------------QVLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALE 97 (694)
T ss_pred HHHhcCcccchhHHHHHHHHHH---------------HHHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 334555565544 356665542 133334444444444443333333 23455778888888888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 354 (857)
+.|.+++|..+++...+ ..| +...+..+..++.+.+.+++|+...++.... .|+..+.
T Consensus 98 ~~g~~~ea~~~l~~~~~-----------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~-- 156 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ-----------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE-- 156 (694)
T ss_pred HcCCcHHHHHHHHHHHh-----------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH--
Confidence 88888888888888876 345 4555667777788888888888888888765 4666554
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH
Q 003016 355 AMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434 (857)
Q Consensus 355 ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 434 (857)
.+.+-.++.+.|+.++|..+|++....+. -+..+|..+..++-..|+.++|...|+.... ...|....
T Consensus 157 ---------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~ 224 (694)
T PRK15179 157 ---------ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARK 224 (694)
T ss_pred ---------HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHH
Confidence 36677777788888888888888887432 2356677788888888888888888888776 23344455
Q ss_pred HHHHH
Q 003016 435 FTGLI 439 (857)
Q Consensus 435 ~~~ll 439 (857)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 55444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.034 Score=67.17 Aligned_cols=220 Identities=10% Similarity=0.073 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..+..|+..+-..+++++|.++.+..++..+. ....|-.+...|.+.++.++|..+ .+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~----~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK----SISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----ceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 36667777777777777777777765543211 122222222255566665555444 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
+.......++.-+..+...|...+ -+...+-.+..+|-+.|+.+++..+++++++.. |+..
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~-----------------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~ 150 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG-----------------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNP 150 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccH
Confidence 222223333333333333444322 234467778888899999999999999999876 4433
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
.. .|.+...|+.. ++++|.+++.+...+ |....++..+.+++.++... .|
T Consensus 151 ~a-----------LNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~ 200 (906)
T PRK14720 151 EI-----------VKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NS 200 (906)
T ss_pred HH-----------HHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---Cc
Confidence 32 28888888888 999999888766443 56666777788888777651 23
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.+ +.-.++.+.+.. +...-+.++-.+-..|-...+++++..+++...+..
T Consensus 201 ~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 201 DDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred ccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 222 122222222222 122344555566666667777777777777776643
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=49.22 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+||++|.+|++.|+++.|.++|++|.+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999988
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.048 Score=65.93 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK-GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~-a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
.......+..|+..+...+.+++|..+.+.-.+. .|+...+-.+.. .+.+.+..+.+..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3566788999999999999999999999966554 466654433222 44455554444443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.+++......++.-...+...|..- .-+...+-.+..+|-+.|+.++|..+|+++.+..
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------- 146 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------------- 146 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------
Confidence 3344444444554444444555542 2355688889999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.-|+.+.|.+-..|+.. ++++|.+++...+..
T Consensus 147 -~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 147 -RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred -cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 55788899999999998 999999988877653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.045 Score=65.35 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 225 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
..++..+-.|.....+.|+.++|..+++...+. .|| ...+..+..++.+.+++++|+..+++.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 346888889999999999999999999999873 465 5677888899999999999999999998753
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHH
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~ 382 (857)
+-+....+.+-.++.+.|++++|..+|+++...+ |+ ..++ ..+-..+-+.|+.++|..
T Consensus 151 -------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~------------~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 151 -------SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGY------------VGWAQSLTRRGALWRARD 209 (694)
T ss_pred -------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHH------------HHHHHHHHHcCCHHHHHH
Confidence 3355666677777889999999999999999843 33 3333 678888899999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
.|+...+.-- +....|+..+. +...-..+++.+.
T Consensus 210 ~~~~a~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 210 VLQAGLDAIG-DGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHhhC-cchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9998875432 22234554432 3333444555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.17 Score=55.95 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
...+.+.|.+++|+..++.+.+. .+-|+..+......+...++.++|.+.++.++.. .|+..
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~ 374 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSP 374 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcc
Confidence 33445778889999999988775 3445666666677788899999999999998875 56643
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
.. +-.+-.+|.+.|+..+|..+++.-...+ .-|...|..|..+|...|+..+|..-..++
T Consensus 375 ~l-----------~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------- 434 (484)
T COG4783 375 LL-----------QLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-------- 434 (484)
T ss_pred HH-----------HHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH--------
Confidence 32 3567788888999999999998877655 346777999999999999888887665554
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
|...|.++.|...+....+...++..+|
T Consensus 435 -----------~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 435 -----------YALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred -----------HHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 4457888888888888877554555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.1 Score=53.15 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 515 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~ 515 (857)
..-...|++.|++++|.+..... -+......=+..+.+..+++-|.+.+++|+.- -+..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----------------ded~ 170 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI----------------DEDA 170 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------chHH
Confidence 33334466666666666666552 23333333344455556666666666666542 2445
Q ss_pred HhhhhHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 516 TYSSMLEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 516 t~~~ll~a~~~~----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
|.+.|..++.+. +.+..|.-+|++|-+ ...|+..+.+....++...|++++|..+++....+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 555555555443 345555555555543 24555555555555555556666666665555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.041 Score=55.95 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
|..+ ..+-..|--.|+-+.+..+...... ....|....+..+....+.|++.+|...|++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-------------
Confidence 5555 6677778888999998888887665 33456667777999999999999999999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
-++|...||.+--+|.+.|+.++|..-|.+..+. .|+..+. .|.|.-.|.-.|+.+.|..++..
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~-----------~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSI-----------ANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchh-----------hhhHHHHHHHcCCHHHHHHHHHH
Confidence 4789999999999999999999999999998875 3333332 27777778888999999999988
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 387 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 387 m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
....+. -|..+-..+.-.....|++++|..+-..-
T Consensus 194 a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 194 AYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 766543 35555677788888899999998876543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00032 Score=47.01 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
||+||++|++.|++++|.++|++|.+.|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 4666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.11 Score=52.95 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD---- 444 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~---- 444 (857)
..|++.|++++|++....... + +. ...=+..+.+..+.+-|...+++|.+ .-+..|.+.|.+++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~--~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EA--AALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HH--HHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 346666777777666654211 1 11 22223445566667777777777765 2345555555555543
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.+.+|.-+|++|.++..|+..+.|-+..++...|++++|..++++.....
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4556677777777766666777777777777777777777777777666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00027 Score=47.33 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0079 Score=66.50 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
-..-.+|+..+...++++.|..+|+++.+. .|+ .+..|+..+...++..+|.+++++..+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------- 229 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-------------- 229 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------------
Confidence 344556667777789999999999999984 255 4455888888899999999999998865
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+.|....+.-...|.+.++++.|+.+.+++.+. .|+.+.. |..|..+|.+.|+++.|+..++.+
T Consensus 230 --~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~-----------W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 230 --NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFET-----------WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHH-----------HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3456677776677788999999999999999875 6877754 799999999999999999999988
Q ss_pred hh
Q 003016 388 EQ 389 (857)
Q Consensus 388 ~~ 389 (857)
+-
T Consensus 295 Pm 296 (395)
T PF09295_consen 295 PM 296 (395)
T ss_pred cC
Confidence 63
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=59.16 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHcCCC--HHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGH--IDD 450 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~--~~~ 450 (857)
.++.+++...++...+.+ ..|...|..+...|...|++++|...|++..... +-+...+..+-.+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777766655 3467789999999999999999999999988732 2345566666665 466677 599
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+++++..+..+.+..++..+...+.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999998767788999999999999999999999999998864
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.17 Score=51.21 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=131.1
Q ss_pred cCChHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH-HHHHH
Q 003016 327 SHQWKGVFWVFKQLRK---SG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA-SVYYE 401 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~---~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~-~t~~~ 401 (857)
..+.++..+++.+|.. .| ..++..+. +.-++-+...+|+.+.|..+++.+..+-..+.. .-..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l-----------~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk- 92 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTL-----------YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK- 92 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHH-----------HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH-
Confidence 4567788888887753 35 67777765 466666777889999999999998766422211 1111
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
..-+-..|.+++|+++|+.+.+ . -+.|.+++--=+...-..|+--+|++-+....+.+..|...|--+-..|...|+
T Consensus 93 -am~lEa~~~~~~A~e~y~~lL~-d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 93 -AMLLEATGNYKEAIEYYESLLE-D-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred -HHHHHHhhchhhHHHHHHHHhc-c-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 1224567999999999999987 2 355666776666666667777788888888777788899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh-hhhHHHHHhc---CCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY-SSMLEASATA---HQWEYFEYVYKGMAL 542 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~-~~ll~a~~~~---g~~~~a~~l~~~m~~ 542 (857)
+++|.-.+++|.- +.|-...| ..+-..+.-. .+.+.+...|.+..+
T Consensus 170 f~kA~fClEE~ll---------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 170 FEKAAFCLEELLL---------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHH---------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 44744443 3333333333 356667777777665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0042 Score=68.96 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003016 177 FVRIMNQ---SGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253 (857)
Q Consensus 177 l~~~M~~---~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 253 (857)
++..|.+ .+...+...+..++..+....+++.+..++-........... -..+..++|..|.+.|..+.|+.++..
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-LPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-cCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 4444443 345677888888999999888999999988777654322211 124556999999999999999999988
Q ss_pred hHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 254 m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
=.. +|+-||.+|+|.||..+.+.|++..|.++..+|...+ ...+..|+...+.+|.+-
T Consensus 129 ~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe---------------~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE---------------EFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh---------------ccCCchHHHHHHHHHHHh
Confidence 776 6999999999999999999999999999999987776 566778887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0084 Score=57.00 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=83.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+......+.+.|++++|...|+.... --+.+...+..+-.++...|++++|...|+....-.+.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 55567788999999999999999876 2344667788899999999999999999999998666788999999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 003016 479 NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g 496 (857)
.|+.++|...|.......
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998844
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=58.23 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH-HHHcCC--h
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI-LGKAGR--P 244 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~-y~k~g~--~ 244 (857)
.+..++++..++...+.. +.|...|..+...|...|+++.|...++..++..+ .+..++..+..+ |...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG----ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCc
Confidence 455577777777776665 56778899999999999999999999999987543 378888888886 477787 5
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
++|.++|++..+. -+-+..++..+...+.+.|++++|...|+++.+..
T Consensus 127 ~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999884 23467889999999999999999999999998863
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.42 Score=50.33 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=55.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH--HH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL--LA 236 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L--i~ 236 (857)
.+-..+.-+|.+.+|+.-|..-.+-. |+.+ ++-.-...|...|.-..|+.=+..++..+ ||- +-..+ -.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF-~~ARiQRg~ 114 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDF-MAARIQRGV 114 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccH-HHHHHHhch
Confidence 44455667788888888777665432 3333 33334455777788788888787777643 231 11111 22
Q ss_pred HHHHcCChhHHHHHHHHhHHc
Q 003016 237 ILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.+.+.|.++.|..-|+.....
T Consensus 115 vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc
Confidence 456788888888888888763
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0032 Score=69.85 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
...+.+....++..+....+++.+..++...+... ...-..|. .++|+.|.+.|..+.++.+++.=
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~------------ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTH------------HALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccH------------HHHHHHHHhcCCHHHHHHHHhCh
Confidence 56677888888998888889999999888887652 22222333 68999999999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 445 (857)
...|+.||..++|.||..+.+.|++..|.++...|.. .....+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999888 56667777877777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.014 Score=55.38 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+.....++...|+++.|...|..++.. .+.+..+|..+..++.+.|++++|...|+..... -+.+...|..+.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 3555677788899999999999998764 3347889999999999999999999999999872 345788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcC
Q 003016 272 VTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.++.+.|++++|...|+.....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.92 Score=53.73 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=68.9
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.+.|..++|..+++.....+.. |..|+..+-..|...+..++|..++++.... .|+......+..+|.|.+.+.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----CCcHHHHHHHHHHHHHHHHHH
Confidence 3678888888888777766644 7778888888888888888888888887642 245666677777888887776
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
.-.++=-+|-+ .++.+.+.+=++++.+.+.
T Consensus 128 ~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 128 KQQKAALQLYK--NFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHH--hCCcccchHHHHHHHHHHh
Confidence 54444444433 1223445544555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0096 Score=65.84 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
.+|+..+...++++.|..+|+++.+.+ |+. +..|+..+...++-.+|+.++++... ..+-+......-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 677788888899999999999999887 443 45578888889999999999999886 233455555666667889
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.++.+.|..+.+++..-.+-+..+|..|..+|.+.|+++.|+..++.+..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999986666778999999999999999999999998864
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.54 Score=49.57 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=185.2
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV---AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
|-..+.-.|++.+|+.-|....+ -|+..|.++ ...|...|+...|+.=+.+..+ .
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----------------l 101 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----------------L 101 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----------------c
Confidence 33445556788888888887776 355555554 3467777877777777777765 5
Q ss_pred CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 311 EPDLVVYNA-VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 311 ~pd~~t~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
+||-..-.. --..+.+.|.++.|..=|+..++.. |+..+ ...++.+.-..++-..
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---------------~~eaqskl~~~~e~~~------- 157 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---------------VLEAQSKLALIQEHWV------- 157 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---------------hHHHHHHHHhHHHHHH-------
Confidence 676432111 1223567888888888888887763 33221 1222222222222111
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
.-.++..+.-+|+...|+.....+.+ -.+-|...+..-..+|...|.+..|+.-++...+-..-++.+.
T Consensus 158 ---------l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ 226 (504)
T KOG0624|consen 158 ---------LVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGH 226 (504)
T ss_pred ---------HHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHH
Confidence 12234445556777777777777765 2334555566666777777887777776666655344566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH----hhhh---H------HHHHhcCCHHHHHHH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT----YSSM---L------EASATAHQWEYFEYV 536 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t----~~~l---l------~a~~~~g~~~~a~~l 536 (857)
--+-..+...|+.+.++...++-.+.+ ||... |-.+ . ......++|-++.+-
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLKld---------------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ 291 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLKLD---------------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEA 291 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHccC---------------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 667777778888888888888777643 66542 1111 1 112233566666666
Q ss_pred HHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 537 YKGMALSGCQLDQTK---HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t---~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
.+...+..-....+. +..+-.+|...|++.+|++.-.+..+ +.|+ +.++.-=..+|.--..+++|+.=|+...+
T Consensus 292 ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 292 GEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666655332212233 33444556778889999988888776 4454 66777667777777888888888887753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.021 Score=53.39 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.....+...+...|+.+.|...++.+.... +.+...|..+...|.+.|++++|..+|+..... .+.+..+|..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 455666777888899999999999887643 337788999999999999999999999988762 34567888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
...|...|++++|...|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999988874
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.019 Score=53.59 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
.....+...+.+.|++++|...|+.... . .+.+...+..+...+.+.|++++|..+++...+..+.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455667778889999999999988876 2 2345667778888888899999999999988775566788888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|...|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999988854
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0096 Score=52.46 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d 395 (857)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.+|.+.... -++...-.+++-..+.+++.|...++.|+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R----~lD~~~ie~kl~~LLtvYqDiL~~~lKP~ 103 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR----ELDSEDIENKLTNLLTVYQDILSNKLKPN 103 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc----cccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence 34567778888999999999999999999 99999995554433210 00111112234456667777777777777
Q ss_pred HHHHHHHHHHHHH
Q 003016 396 ASVYYELACCLCN 408 (857)
Q Consensus 396 ~~t~~~lI~~~~~ 408 (857)
..||+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=51.71 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC-CCCHhHhhhhHHHHHhcC--------CHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL-KPDEYTYSSMLEASATAH--------QWEYFEYVYK 538 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~-~pd~~t~~~ll~a~~~~g--------~~~~a~~l~~ 538 (857)
+-...|.-+...+++.....+|..+++.| + .|...+|+.++.+.++.. .+-..+.+|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~-------------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYq 93 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG-------------ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQ 93 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC-------------CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 34556667777799999999999999999 8 899999999999887752 3445667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Q 003016 539 GMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 539 ~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
.|+..+++|+..||+.++..+.+
T Consensus 94 DiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 94 DILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHhccCCcHHHHHHHHHHHHH
Confidence 77777788888888777776543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.017 Score=48.74 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
|..+...+...|++++|...|.+.... .+.+...+..+...+...|++++|.+.|+......+.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 444555566666666666666666541 122234455555666666677777777666655334444566777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTR 494 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~ 494 (857)
.|+.++|...|.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.024 Score=60.45 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.+|..+++.+-+.+.++.|+.+|..+.+.+ ....++++..+++. |...++.+.|.+||+...+. +..+..-|..-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467888888888888999999999987532 12234555555543 23346677799999998884 55678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD---LVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+.-+...++.+.|..+|++.... +.++ ...|...+.-=.+.|+++.+..+.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~----------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS----------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT----------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh----------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764 3333 358999999989999999999999998875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.06 Score=51.17 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
..|..++..+ ..++...+...++.+.... |+. ...-.+-..+...|++++|...|+....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---------------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---------------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---------------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455555555 4788888888888888765 433 2222344567777999999999998887
Q ss_pred cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 543 SGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 543 ~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 609 (857)
..-.|+. .....|...+...|++++|...++....... ....+...-+.+.+.|+.++|...|+.
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6522222 2344456667788899999888876433332 345566667778888999998888875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=1.2 Score=48.23 Aligned_cols=107 Identities=12% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
+.-|.-+...|+...|.++..+.. +||..-|-..|.+|+..++|++-..+-.. +-.++.|-.++.+|.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 455666667788777777766653 46777788888888888888766554221 2234778888888888
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
.|+..+|..+...+. +..-+.+|.++|++.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887776632 25667778888888888766433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.2 Score=48.09 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p 547 (857)
+.+..|.-+...|+...|.++-.+. -.||..-|-..|.+++..++|++-.++... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-----------------kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kK 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-----------------KVPDKRFWWLKIKALAENKDWDELEKFAKS------KK 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-----------------CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CC
Confidence 3445566666777777777776665 347777777788888888887776654321 12
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 003016 548 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 627 (857)
Q Consensus 548 d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~ 627 (857)
.+.-|-.++.+|.+.|...+|..+...+ + +..-+..|.+.|.+.+|.+..-+.. |...+..+..
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~ 299 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK 299 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH
Confidence 3456677777777778777777776652 1 2445677777788777776654442 3344555555
Q ss_pred Hhhhcc
Q 003016 628 SNEDRI 633 (857)
Q Consensus 628 a~~~~g 633 (857)
.|....
T Consensus 300 ~~~~~~ 305 (319)
T PF04840_consen 300 RCPGNN 305 (319)
T ss_pred HCCCCC
Confidence 554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.053 Score=51.53 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------------ 78 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------------ 78 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------------
Confidence 344444444 3566666666666666631 122 1222233455666677777777777766543
Q ss_pred CCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 307 DPVLEPD--LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 307 ~~~~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
..|+ ....-.+...+...|++++|+..+.........|. . +..+-+.|.+.|+.++|...|
T Consensus 79 ---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~--~------------~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 79 ---PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKAL--A------------AELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHH--H------------HHHHHHHHHHCCCHHHHHHHH
Confidence 2222 12233345556667777777776654222111111 1 255666667777777777666
Q ss_pred HH
Q 003016 385 RN 386 (857)
Q Consensus 385 ~~ 386 (857)
+.
T Consensus 142 ~~ 143 (145)
T PF09976_consen 142 QK 143 (145)
T ss_pred HH
Confidence 54
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.03 Score=59.77 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
+|..++...-+.+..+.|..+|.+......+..+.+...+++.. ...++.+.|..||+...+.+..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666666666666666666666665422233344333333322 22355555777777777666667777777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 478 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+.|+.+.|..+|++.... .|.. ..|...+.-=...|+++.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~---------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS---------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT---------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776542 1322 2566666655566666666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=47.77 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 232 n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.|....... +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~ 65 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------P 65 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------C
Confidence 34444555556666666666655442 11233455555555556666666666666555432 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
.+..++..+...+...|+++.|...+....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 2334555555555566666666665555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.035 Score=55.12 Aligned_cols=88 Identities=22% Similarity=0.328 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----------
Q 003016 262 PDIAAYHSVAVTLGQV-----GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP---------- 326 (857)
Q Consensus 262 pd~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~---------- 326 (857)
.|-.+|..++..|.+. |..+-....+..|.+.| +..|..+|+.||+.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg---------------v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG---------------VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC---------------CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 4444555555444432 44444444455555554 55555555555554432
Q ss_pred ------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 327 ------SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 327 ------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
-.+-+-|++++++|...|+-||..|+ ..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~------------~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETE------------QMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH------------HHHHHHhccccH
Confidence 12346789999999999999999998 778888776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1 Score=45.73 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHhc--CC-CCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003016 410 GRWQDAMLVVEKIKSL--RH-SKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~--~g-~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 485 (857)
.+.++.++++.+|... .| ..++..+ |-.++-+...+|+.+.|...++.+...++.+..+-..-.-.+--.|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3455556665555431 12 3455443 455566666777888888888777765522222221111223446778888
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~ 564 (857)
+++++...+.. | |.+++--=+...-..|+--+|++-+.+..+ .+..|...|.-+-..|...|.
T Consensus 106 ~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 106 IEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhH
Confidence 88888877655 4 455555544444445655566666655554 256677778778788888888
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHhh
Q 003016 565 CHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQS---NYEKAVALINAMA 611 (857)
Q Consensus 565 ~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g---~~~~A~~l~~~M~ 611 (857)
++.|.-.++++.-. .| ++..+..+-..+...| +++-|.+.+.+-.
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888887777653 33 3445555555555443 3455666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.9 Score=48.39 Aligned_cols=379 Identities=13% Similarity=0.071 Sum_probs=217.1
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 165 LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 165 l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
....|.++.|+.+|.+-.... ++|...|+.-..+|+..|+++.|.+=-...++..+.. .--|+-+-.++.-.|++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSRKGAALFGLGDY 86 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHHhHHHHHhcccH
Confidence 446788889999888877665 3477788888889999999988888777666543321 24577777777778899
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc---CCH---------------------HHH-HHHHHHHHcCCChhhh
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV---GLL---------------------KEL-VKLIERMRQKPSKRIK 299 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~---g~~---------------------~~A-~~l~~~m~~~g~~~l~ 299 (857)
++|+.-|.+-.+. -+-|...++-+..++... ++. +.+ ..++...++.. .++.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p-~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP-TSLK 163 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc-Hhhh
Confidence 9999988887663 122345555555555111 000 000 11111111111 1100
Q ss_pred ---------------------hhh---hhcCCCCCCC------------CH----------HHHHHHHHHHHhcCChHHH
Q 003016 300 ---------------------NMH---RKNWDPVLEP------------DL----------VVYNAVLNACVPSHQWKGV 333 (857)
Q Consensus 300 ---------------------~m~---~k~f~~~~~p------------d~----------~t~~~li~~~~~~g~~~~A 333 (857)
.++ ...-..+..| |. .-...+.++.-+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000 0000001111 11 1234466666777788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH-------HHHHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE-------LACCL 406 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~-------lI~~~ 406 (857)
.+-+....+.. ...+| ++..-.+|...|........-+.-.+.|-..- .-|+. +-.+|
T Consensus 244 ~q~y~~a~el~---~~it~-----------~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 244 IQHYAKALELA---TDITY-----------LNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHHhHh---hhhHH-----------HHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhh
Confidence 88777777654 45555 47788888888888887777766655553211 11333 33456
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003016 407 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 407 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A 485 (857)
.+.++++.|+..|.+... ....|+..+ +....+++........- +.|.. .-.-.--..+.+.|++..|
T Consensus 309 ~k~~~~~~ai~~~~kaLt-e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALT-EHRTPDLLS---------KLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhHHhHHHHHHHHHHHhh-hhcCHHHHH---------HHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhccCHHHH
Confidence 667889999999998776 555555332 22233333333333222 11222 1111224556677888888
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAG 563 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G 563 (857)
.+.+.+++... | |...|...-.+|.+.|.+..|+.=-+..++. .|+- ..|.-=..++-...
T Consensus 378 v~~YteAIkr~---------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 378 VKHYTEAIKRD---------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHhcC---------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Confidence 88888877754 5 5567777777777778777777665555543 3432 23333333444556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003016 564 KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 596 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~ 596 (857)
+++.|.+.|.+..+.+ |+..-+..-+.-|..
T Consensus 441 ~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 7778888887776653 444433333333333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.029 Score=55.68 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
-..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+| +.|++.+=+ |.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y------------~~LLDvFPK-g~f------- 102 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVY------------KALLDVFPK-GKF------- 102 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHH------------HHHHHhCCC-CCc-------
Confidence 46788899999999875 58888888999999999999999999 666655443 211
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHh
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH-IDDCISIFQHMK 459 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~A~~if~~m~ 459 (857)
+|... +.++..- ...+-+-|++++++|.. .|+.||..|+..|++.+++.+. +.+..++.-.|.
T Consensus 103 --------vp~n~-fQ~~F~h--yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 103 --------VPRNF-FQAEFMH--YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred --------ccccH-HHHHhcc--CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 12111 1111111 11234456666666666 6666666666666666655443 233333333343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.6 Score=50.72 Aligned_cols=348 Identities=13% Similarity=0.058 Sum_probs=194.6
Q ss_pred HHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003016 181 MNQSGLMFTEGQMLK-----LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (857)
Q Consensus 181 M~~~g~~p~~~t~~~-----ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 255 (857)
+.+.|++.+...|.. +|..+...+.+..|.++-.++-.. ....-.+|.....-+.+..+..+ ..+++.+.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p----~~~~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~ 497 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP----ESQGDRVLLEWARRKIKQSDKMD-EEVLDKID 497 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc----cccccHHHHHHHHHHHhccCccc-hHHHHHHH
Confidence 446688888877755 577788889999999999887321 11124677777777777643221 23334443
Q ss_pred HcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003016 256 EDCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (857)
Q Consensus 256 ~~~gi-~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~ 334 (857)
++.+. ..+.++|..+.+-.-+.|+.+-|..+++.=...+..- .+--+..-+...+.-+.+.|+.+...
T Consensus 498 ~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV-----------~lLL~m~~~~~AL~kaies~d~~Li~ 566 (829)
T KOG2280|consen 498 EKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQV-----------PLLLKMKDSSLALKKAIESGDTDLII 566 (829)
T ss_pred HHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchh-----------HHHhccchHHHHHHHHHhcCCchhHH
Confidence 32222 2356788888888889999999999887543332000 00112234566777888889998888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 335 WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ-RGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
.++-.|.+.- +...| +....+...|..+|.+..+ .+-. .+-+.| +.++-.
T Consensus 567 ~Vllhlk~~~---~~s~l------------------~~~l~~~p~a~~lY~~~~r~~~~~-------~l~d~y-~q~dn~ 617 (829)
T KOG2280|consen 567 QVLLHLKNKL---NRSSL------------------FMTLRNQPLALSLYRQFMRHQDRA-------TLYDFY-NQDDNH 617 (829)
T ss_pred HHHHHHHHHH---HHHHH------------------HHHHHhchhhhHHHHHHHHhhchh-------hhhhhh-hcccch
Confidence 8888876541 11111 1111234455566655433 2211 111112 222222
Q ss_pred HHHHHHHHH--Hh---cCCCCCcHHHHHHHHHHHHcCCC----------HHHHHHHHHHHhh--CCCCCHHHHHHHHHHH
Q 003016 414 DAMLVVEKI--KS---LRHSKPLEITFTGLIISSMDGGH----------IDDCISIFQHMKD--HCEPNIGTVNAMLKVY 476 (857)
Q Consensus 414 ~A~~l~~~m--~~---~~g~~pd~~t~~~ll~a~~~~g~----------~~~A~~if~~m~~--~~~p~~~~~~~li~~~ 476 (857)
.+..-|..- .. ..+..|+.. ..-++|++... ...-.++++.+.. +..-.--+.+--+.-+
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~l 694 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTL 694 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHH
Confidence 222222110 00 012233322 22333443332 1122223333333 1222233344455556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 556 (857)
...|+-.+|.++-.+. -.||-..|--=+.+++..+++++-+++-+.+. .+.-|.-.+
T Consensus 695 i~~g~~k~a~ql~~~F-----------------kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 695 ILIGQNKRAEQLKSDF-----------------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred HHccchHHHHHHHHhc-----------------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 6778888888777765 34777777777888888888887766555432 134455567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 557 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.+|.+.|+.++|.+++.+... +...+.+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 778888888888888765422 1156677888888888776643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.13 Score=46.47 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCC-CCHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY-PDIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~-pd~~t~~~l 270 (857)
++..+...+.+.|+++.|...+..+....+.. ......+..+...|.+.|+++.|...|+.+.....-. ....++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45566667777888888888888887543221 1124456667888888888888888888877632111 124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
..++.+.|+.++|...++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888888888888888887753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=46.10 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a 441 (857)
-.+...+.+.|++++|...|+.+.+.... .....+..+..++.+.|+++.|...|+.......- ......+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 46667778888888898888888765321 12345666788888888888888888887762211 1123456666677
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
+.+.|+.++|...++.+....+.+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 788888888888888887754444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.2 Score=47.69 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=77.0
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-----CC
Q 003016 323 ACVPS-HQWKGVFWVFKQLRKSGLKP-SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-----GT 395 (857)
Q Consensus 323 ~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-----~d 395 (857)
.|-.. |+++.|.+.|.+..+.--.- .....+ ..+..+...+.+.|++++|..+|+++...-.. .+
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~--------~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA--------ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH--------HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 34444 67778887777765431111 111111 12367788899999999999999998754322 11
Q ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCc--HHHHHHHHHHHHc--CCCHHHHHHHHHHHhh
Q 003016 396 AS-VYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPL--EITFTGLIISSMD--GGHIDDCISIFQHMKD 460 (857)
Q Consensus 396 ~~-t~~~lI~~~~~~g~~~~A~~l~~~m~~~-~g~~pd--~~t~~~ll~a~~~--~g~~~~A~~if~~m~~ 460 (857)
.. .|-..+-++...|++..|...|++.... .++..+ ......||.+|-. ...+..+..-|+.+.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 21 2333444667789999999999998752 123222 3456777888754 4567777777777765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.4 Score=55.60 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhc--------
Q 003016 462 CEPNIGTVNAMLKVYSRN-----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATA-------- 527 (857)
Q Consensus 462 ~~p~~~~~~~li~~~~~~-----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~-------- 527 (857)
.+.|...|...+.+.... +....|..+|++..+.. ||- ..|..+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---------------P~~a~a~A~la~~~~~~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---------------PDFTYAQAEKALADIVRHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHHHhcCCccH
Confidence 456778888888876542 23678999999988844 764 3344333333221
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
.++..+.+........ ....+...|.++-......|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1123334444433332 233455677777666667899999999999988864 6888899888899999999999999
Q ss_pred HHHhh-hCCCccCHHH
Q 003016 607 INAMA-YAPFHITERQ 621 (857)
Q Consensus 607 ~~~M~-~~~~~p~~~~ 621 (857)
+++.. ..|..|+...
T Consensus 476 ~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 476 YSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHhcCCCCchHHH
Confidence 98853 3455554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.023 Score=48.33 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 375 GKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
|+++.|..+|+++.+.... ++...|-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555444331 1233333345555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.14 Score=56.75 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=70.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
..+...|++++|+..|.+... -.+-+...|..+..+|.+.|++++|...++......+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 445567888888888888776 222345567777778888888888888888887754557788888889999999999
Q ss_pred HHHHHHHHHHHcC
Q 003016 484 KAKELFEETTRAN 496 (857)
Q Consensus 484 ~A~~lf~~M~~~g 496 (857)
+|+..|++.....
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988854
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=4.4 Score=47.39 Aligned_cols=332 Identities=9% Similarity=0.062 Sum_probs=200.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG---SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+++++..++.+..|+.+-..|...-.+- ...|.....-+.+.. +-+.+..+-+.+ .. . .....+|....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~---~-~~~~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SA---K-LTPGISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cc---c-CCCceeHHHHH
Confidence 567899999999999999988886443222 566777776666653 333444444433 11 1 12446777787
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLY---PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~---pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.---.+|+++.|..+++.=+....-. -+..-+...+.-+.+.|+.+-...++-.|...-
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------------------ 576 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------------------ 576 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------------------
Confidence 77778999999999987644321101 133345666777778888888777777765431
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH-HHH----
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV-RNM---- 387 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf-~~m---- 387 (857)
+...|...| .+...|..+|.+..+.. |. ..|-+.|-...+..++-.+. +..
T Consensus 577 ~~s~l~~~l------~~~p~a~~lY~~~~r~~---~~---------------~~l~d~y~q~dn~~~~a~~~~q~~~~~~ 632 (829)
T KOG2280|consen 577 NRSSLFMTL------RNQPLALSLYRQFMRHQ---DR---------------ATLYDFYNQDDNHQALASFHLQASYAAE 632 (829)
T ss_pred HHHHHHHHH------HhchhhhHHHHHHHHhh---ch---------------hhhhhhhhcccchhhhhhhhhhhhhhhh
Confidence 122222222 22344555555554421 11 11222222222222211111 110
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003016 388 EQRGVVGTASVYYELACCLCNNGR----------WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 457 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~----------~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~ 457 (857)
...+..|+.. .....|++... ..+-+.+.+.+..+.+..-...|.+-.+.-+...|+..+|.++-.+
T Consensus 633 ~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~ 709 (829)
T KOG2280|consen 633 TIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD 709 (829)
T ss_pred hhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh
Confidence 0112233222 22333333322 1222334444444444444555677777888889999999999888
Q ss_pred HhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHH
Q 003016 458 MKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 537 (857)
Q Consensus 458 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 537 (857)
.+- ||-..|--=+.+++..++|++-+++-..+. ...-|.-...+|.+.|+.++|...+
T Consensus 710 Fki---pdKr~~wLk~~aLa~~~kweeLekfAkskk-------------------sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 710 FKI---PDKRLWWLKLTALADIKKWEELEKFAKSKK-------------------SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cCC---cchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------------CCCCchhHHHHHHhcccHHHHhhhh
Confidence 876 899999999999999999998877766542 2566777889999999999999887
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 538 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 538 ~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
.+. .+.. -.+.+|.++|++.+|.+.-
T Consensus 768 prv-----~~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 768 PRV-----GGLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcc-----CChH----HHHHHHHHhccHHHHHHHH
Confidence 753 2222 5678899999988887763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.42 Score=46.77 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
..|..+...|...|++++|...|++......-.++ ...+..+...+.+.|++++|...+.......+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666677778888888877777652111121 34566777777778888888887777766434456666666666
Q ss_pred HHhcCC--------------HHHHHHHHHHHHH
Q 003016 476 YSRNDM--------------FSKAKELFEETTR 494 (857)
Q Consensus 476 ~~~~g~--------------~~~A~~lf~~M~~ 494 (857)
|...|+ +++|.+++.+...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 766665 4666777776655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.22 Score=55.17 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 198 ~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
..+...|+++.|...|..+++..+ .+...|..+..+|.+.|++++|+..+++.... -+.+...|..+..+|...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 445567889999999988887532 36778888888899999999999999988763 123577888888889999
Q ss_pred CCHHHHHHHHHHHHcC
Q 003016 278 GLLKELVKLIERMRQK 293 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~ 293 (857)
|++++|...|++....
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988774
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=46.81 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK------------RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~------------~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
|..++..+|-++++.|+++....+.+.+...... ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5678899999999999999999998877544321 2347899999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 003016 257 DCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 257 ~~gi~pd~~t~~~li~~~~~ 276 (857)
.++++-+...|..|+.=...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 99998899999999975443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.037 Score=46.98 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCC-CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPL-KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLL 556 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~-~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll 556 (857)
.|+++.|+.+|+++.... . .|+...+-.+..++.+.|++++|..+++. . ...|+. .....+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHH
Confidence 456666666666666543 1 11233333455566666666666666655 1 122222 2222333
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 003016 557 VEASRAGKCHLLEHAFDS 574 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~ 574 (857)
.+|...|++++|.++|++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 445566666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.038 Score=44.55 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|.++|+.+....+-+...+..+..+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45777777777777766555577777778888888888888888888777744
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.85 Score=52.93 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=103.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC--------ChhHHHHH
Q 003016 184 SGLMFTEGQMLKLLKGLGDK-----GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG--------RPHEALRI 250 (857)
Q Consensus 184 ~g~~p~~~t~~~ll~a~~~~-----g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g--------~~~~A~~v 250 (857)
.+.+.|...|...+++.... ++...|..+|+++++..+ .....|..+..+|.... +...+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----DFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45567888999998886543 237799999999987532 25566666555443321 12334444
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh
Q 003016 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (857)
Q Consensus 251 f~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~ 330 (857)
............+...|.++...+...|++++|...+++... ..|+...|..+...+...|+.
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-----------------L~ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-----------------LEMSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHHcCCH
Confidence 444332112334567888887777778999999999999987 457889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 003016 331 KGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
++|.+.+.+..+. .|...||
T Consensus 470 ~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 470 RLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHHHHHHHhc--CCCCchH
Confidence 9999999998875 4554455
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.4 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 627 ESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 627 ~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.|+-+.|+..+|.++++++....+.
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhhhhh
Confidence 3455667777777777777755443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.63 Score=45.53 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLII 440 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~ 440 (857)
+..+...|...|++++|...|++..+.+..+. ...|..+...|.+.|++++|...+.+.... .| +...+..+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 47788889999999999999999876543332 357888999999999999999999998772 23 3445566666
Q ss_pred HHHcCCC
Q 003016 441 SSMDGGH 447 (857)
Q Consensus 441 a~~~~g~ 447 (857)
.+...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 6666665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=4 Score=42.45 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=111.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.....+.+.|++++|.+.|+.+...-..+..... ..-.+..+|.+.+++++|...|++..+........-
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~----------a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ----------VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3444566789999999999999875433322211 013567788899999999999998877654332333
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
|...+.|.+..... ...|...........| ..++..+|.-|-.+.-..+|...+..+... -...--.
T Consensus 107 ~a~Y~~g~~~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~~ 180 (243)
T PRK10866 107 YVLYMRGLTNMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYELS 180 (243)
T ss_pred HHHHHHHHhhhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHHH
Confidence 54445554421110 0011110000000011 123455666666666677777666666541 1112224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGM 540 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m 540 (857)
+...|.+.|.+..|..=|+.+.+.-+ +..........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYP-----------DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCC-----------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55668888888888888888887651 02223445566777888888888887766544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.39 Score=54.40 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
...-+++|++.| -.||.+.. ...|+-.|.+.+|-++|.+- |..
T Consensus 619 li~EL~~~k~rg---------------e~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e---------------- 661 (1081)
T KOG1538|consen 619 LISELEERKKRG---------------ETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE---------------- 661 (1081)
T ss_pred HHHHHHHHHhcC---------------CCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch----------------
Confidence 334456677776 66776543 23356677788887777643 322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------Hh--h-----cCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRN-------ME--Q-----RGV-VGTASVYYELACCLCNNGRWQDAMLVVEK------ 421 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~-------m~--~-----~~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~------ 421 (857)
|--+.+|.....++.|.++... |. + +++ .|- +....+...|+.++|..+.-+
T Consensus 662 --nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~ 734 (1081)
T KOG1538|consen 662 --NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDM 734 (1081)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHH
Confidence 4444555555555555554431 11 1 011 121 123345556777776655321
Q ss_pred ---HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 422 ---IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 422 ---m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+-. .--..+..+.-.+-..+.+...+..|-++|..|-. ..+++++....++|.+|..+-+...+
T Consensus 735 lidI~r-kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 735 LIDIAR-KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHh-hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 111 11123334555555556677888899999999865 35678889999999999999888765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.22 E-value=5.2 Score=42.64 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~ 341 (857)
|.-.-..|-..+++++|.+.|....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4444555666777777777776654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.39 Score=46.77 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
...|..+...+...|++++|+..|++......-.+ ...++..+-..+...|+.++|...++......+....+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44577777788888999999999998876221111 23467888888889999999999998887744445566777777
Q ss_pred HHH-------hcCCHHHHHHHHHH
Q 003016 475 VYS-------RNDMFSKAKELFEE 491 (857)
Q Consensus 475 ~~~-------~~g~~~~A~~lf~~ 491 (857)
.|. +.|+++.|...+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 777 77787755555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.4 Score=50.09 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
-|...|-.|-..|.+.|+.+.|..-|..-.+..|-.|+... |...+..-+......++..+|+++...-+-|+.+-.-|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 46667999999999999999999999999887777777654 44444444455567789999999998666788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
-..+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l---------------p~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL---------------PADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---------------CCCCchHHHHHH
Confidence 899999999999999999999865 666677776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.94 Score=41.32 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHh
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCISIFQHMKDHCEP---NIGTVNAMLKVYSR 478 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p---~~~~~~~li~~~~~ 478 (857)
.++-..|+.++|+.+|++... .|.... ...+..+-+.+...|++++|..+|+......+. +......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344455666666666665555 444333 123444555555666666666666655542211 12222222334455
Q ss_pred cCCHHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEET 492 (857)
Q Consensus 479 ~g~~~~A~~lf~~M 492 (857)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666666666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=41.79 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=48.9
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
...|++++|.++|+.++...+ .+..++-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHHH
Confidence 356888999999998877532 37778888999999999999999999998874 47755565554
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.44 Score=43.88 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~--~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
|..++.++|.++++.|+.+....+.+..-.-....-..- ...+++..|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888888765532210000000 111233444444444444444444444444444444332
Q ss_pred c-CCCCCHHHHHHHHH
Q 003016 543 S-GCQLDQTKHAWLLV 557 (857)
Q Consensus 543 ~-g~~pd~~t~~~Ll~ 557 (857)
. +++.+..++..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.7 Score=43.75 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~ 279 (857)
....|+.+.+...+..++..-.....++... ..-......-++.+.- .....++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~--------~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL--------DALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH--------HHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccC
Confidence 3456777888887777765432222222111 1112222333333322 356667778888999
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR-----KSGLKPSAATY 352 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t~ 352 (857)
+++|..+...+... -+-|...|..+|.+|...|+...|.++|+.+. +.|+.|+..|-
T Consensus 78 ~~~a~~~~~~~l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 78 YEEALRLLQRALAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999999998875 35578899999999999999999999998874 35899988773
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.94 Score=46.15 Aligned_cols=136 Identities=14% Similarity=0.022 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
.-++++..+.-.|.+.-...++.+..+.. .+-++.....+.+.-.+.|+.+.|...|+...+..-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~ 243 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ 243 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 45667777777788888888888888765 677888888999999999999999999998876655
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
..|..+++.++. .+.-..|.-.+++..|...|++....+.. |...-|.=.-+..-.|+..+|++..+.|..
T Consensus 244 kL~~~q~~~~V~-------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 244 KLDGLQGKIMVL-------MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhccchhHHHH-------hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556555532221 33444566678888999999888877643 333344444455567889999999998876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.83 Score=44.45 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~--d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
|..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..++..... .+....++..+...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i 115 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 4777888889999999999999987553222 2357888999999999999999999998762 22223445555555
Q ss_pred HH-------cCCCHHHHHHHHHHH
Q 003016 442 SM-------DGGHIDDCISIFQHM 458 (857)
Q Consensus 442 ~~-------~~g~~~~A~~if~~m 458 (857)
+. ..|+++.|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 65 778887666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.1 Score=42.70 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
....-.+-..+...|++++|..+|+-..... |... -|-.|-.+|-..|++++|+..|.......
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4445556666788999999999999988743 7554 45566666666799999999999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+-|+..+-.+-.++...|+.+.|.+.|+.....
T Consensus 100 -~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 100 -IDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 245677888888899999999999999987665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.42 Score=49.03 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+.|..+|-+++..+.. .+.++-....++.|.+.|+.-|..+| +.||+.+-|-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vY------------k~LlnvfPKg----------- 120 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVY------------KGLLNVFPKG----------- 120 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHH------------HHHHHhCccc-----------
Confidence 6788889888888764 46788888889999999999999999 6666544332
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHHhh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI-DDCISIFQHMKD 460 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~-~~A~~if~~m~~ 460 (857)
...|... +....--|-+ +-+-++.++++|.. .|+.||..+-..|++++.+.+.. .+..++.-.|.+
T Consensus 121 -----kfiP~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 121 -----KFIPQNV-FQKVFLHYPQ--QQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred -----ccccHHH-HHHHHhhCch--hhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2233111 1111111211 22346667777777 67777777777777777665542 344444445544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.4 Score=46.10 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~ 553 (857)
+.+.+++.+|+..|.+.+. +.| |.+-|..--.+|++.|.++.|.+-.+..+. +.|.. .+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~ 153 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYG 153 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHH
Confidence 3455666666666666665 334 444455555666666666666655544443 33432 3666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 588 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~ 588 (857)
.|-.+|...|++++|.+.|+...+ +.|+-.+|-
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHH
Confidence 666666666666666666666554 455555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=6.7 Score=40.77 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=98.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-AAY---HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~-~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
.....+.+.|+++.|.+.|+.+... .|+. ..- -.+..+|-+.+++++|...|++..+.-.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P------------- 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP------------- 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-------------
Confidence 3444556688999999999998874 2432 222 3455677888999999999988877541
Q ss_pred CCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHH
Q 003016 309 VLEPDLVVYNAVLNACVP--S---------------HQ---WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLV 368 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~--~---------------g~---~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li 368 (857)
-.|+ .-|...+.+.+. . .+ ...|+..|+. +|
T Consensus 101 -~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------------------li 151 (243)
T PRK10866 101 -THPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------------------LV 151 (243)
T ss_pred -CCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------------------HH
Confidence 1222 233333333321 1 01 1233333444 44
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHcCCC
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-HSKPLEITFTGLIISSMDGGH 447 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-g~~pd~~t~~~ll~a~~~~g~ 447 (857)
+-|=...-..+|...+..+.++=-. .--.+..-|.+.|.+.-|..-|+.+.+.. +.+........++.+|.+.|.
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~----~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAK----YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 4444444444554444333221000 01123455777777777777777776522 223334456677777878888
Q ss_pred HHHHHHHHHHHh
Q 003016 448 IDDCISIFQHMK 459 (857)
Q Consensus 448 ~~~A~~if~~m~ 459 (857)
.++|..+...+.
T Consensus 228 ~~~a~~~~~~l~ 239 (243)
T PRK10866 228 NAQADKVAKIIA 239 (243)
T ss_pred hHHHHHHHHHHh
Confidence 887777666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.44 Score=49.61 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHc
Q 003016 484 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRA 562 (857)
Q Consensus 484 ~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~ 562 (857)
+...+-++++..| .-....+++++|+..|.+.++ +.|+.. -|..=-.+|++.
T Consensus 76 e~~~~AE~LK~eG-------------------------N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~L 128 (304)
T KOG0553|consen 76 EDKALAESLKNEG-------------------------NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKL 128 (304)
T ss_pred hHHHHHHHHHHHH-------------------------HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHh
Confidence 5666667777777 456778999999999999997 566554 455556669999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhc
Q 003016 563 GKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR 632 (857)
Q Consensus 563 G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~ 632 (857)
|.++.|++-.+.... +.|+ ..+|..|-.+|...|++++|++.|++-+ .+.|+..+|..=|......
T Consensus 129 g~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 129 GEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHHHHHH
Confidence 999999998888776 4454 4689999999999999999999999866 6788888887776655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=7.8 Score=41.20 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=130.4
Q ss_pred HHcCCHHHHHHHHHHHhhcC--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCCcH----
Q 003016 372 WEEGKINEAVAAVRNMEQRG--VVGT------ASVYYELACCLCNNGRWQDAMLVVEKIKSL-------RHSKPLE---- 432 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~--~~~d------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-------~g~~pd~---- 432 (857)
.+.|+++.|..++.+..... ..|+ ...||.-...+.+..+++.|...+++..+. ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999998876543 2232 223554444444443888887776654431 1233333
Q ss_pred -HHHHHHHHHHHcCCCHH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 433 -ITFTGLIISSMDGGHID---DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 433 -~t~~~ll~a~~~~g~~~---~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
.++..++.+|...+..+ +|.++++.+.........++-.-+..+.+.++.+++.+++.+|...-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------------ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV------------ 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc------------
Confidence 35677788888777655 45566666655433345566566777777899999999999998753
Q ss_pred CCCCCHhHhhhhHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH---HHHc------CCHHHHHHHHHHH
Q 003016 509 PLKPDEYTYSSMLEASATA--HQWEYFEYVYKGMALSGCQLDQT--KHAWLLVE---ASRA------GKCHLLEHAFDSL 575 (857)
Q Consensus 509 ~~~pd~~t~~~ll~a~~~~--g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~~---~~~~------G~~~~A~~~~~~m 575 (857)
.-....|..++..+... .....+...+..++...+.|... .-..++.. .... ++++....+++.+
T Consensus 152 --~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 152 --DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred --ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 21345566666655222 33456667777777666666553 11122222 1121 1255555566644
Q ss_pred HHC-CCCCCHHHHH---HH----HHHHHHcCCHHHHHHHHHH
Q 003016 576 LEA-GEIPHPLFFT---EM----LIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 576 ~~~-gi~p~~~~~~---~l----i~~~~~~g~~~~A~~l~~~ 609 (857)
.+. +.+.+..+-. ++ ...+.+++++++|.++|+-
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 333 2222322211 22 3456677999999998874
|
It is also involved in sporulation []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.18 Score=40.23 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+...|++++|...|+.+.+..+-+...|..+..++.+.|++++|...|++..+..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667777777777777776555567777777777778888888888888776643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.9 Score=44.10 Aligned_cols=129 Identities=9% Similarity=-0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH---
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS--- 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a--- 441 (857)
+.+++...-.|.+.-...++.+..+++..-+......+...-.+.|+.+.|...|++..+ ..-+.|..+++.++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHhhhh
Confidence 445555555555555666666666655555555555555556666666666666665554 3333344444333321
Q ss_pred --HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 442 --SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 442 --~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
|.-..++-.|.+.|.++...-..|+..-|.-.-+..-.|+..+|++..+.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22234455555555555543333444444333333334555666666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.8 Score=39.54 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=72.9
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
.+-..|..++|+.+|++-...|.... ...+..+-+.+...|++++|..+++......+... -+..+...+..++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHHC
Confidence 34456888899999999888886644 23566677778888999999999988876432211 1222333344467778
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
|+.++|...+-.... ++...|.--|..|++
T Consensus 89 gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 89 GRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 999999888876655 455567666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.99 E-value=7.6 Score=39.09 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=109.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
....+...|++.+|...|+.+...-.......- ..-.++.+|.+.|+++.|...|++..+.-......-+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~----------A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQ----------AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHH----------HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 344567889999999999999876322111110 1246788899999999999999998765433222224
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
...+.|.+........+ . ....+. ..+|..+|.-|-.+....+|......+... =...--.+..
T Consensus 81 A~Y~~g~~~~~~~~~~~------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~ia~ 149 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGIL------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccch------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44444443322221111 0 000111 234677788888888888888877777651 1222334677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFE 534 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~ 534 (857)
.|.+.|.+..|..-|+.+.+.- |+. .....++.++.+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y---------------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY---------------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS---------------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC---------------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999876 543 35567778888888777443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.84 E-value=19 Score=43.19 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=143.1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~--~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
..+++..|+.....+.+.. ||. .|..+++++ .+.|..++|..+++.....+. .|..+...+-..|-..++.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhh
Confidence 5677888988888877653 443 455566664 567999999999887654322 2888999999999999999
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~ 324 (857)
++|..+|++.... .|+..-...+..+|++.+.+.+-.+.=-+|.+. .+.+...|=++++..
T Consensus 94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----------------~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----------------FPKRAYYFWSVISLI 154 (932)
T ss_pred hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCcccchHHHHHHHH
Confidence 9999999999864 588888888889999998886644444444332 344555555566655
Q ss_pred HhcC----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH-HHhhcCCC
Q 003016 325 VPSH----------QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR-NMEQRGVV 393 (857)
Q Consensus 325 ~~~g----------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~-~m~~~~~~ 393 (857)
.+.. -..-|...++.+.+.+-.-.... - .-.-....-..|+.++|..++. ...++-..
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a--E---------~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA--E---------IILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHH--H---------HHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 4421 12334555555555431111110 0 0111223345678888888883 44444444
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.+...-+--+..+...++|.+..++-.++..
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444445556667777888887777777766
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.4 Score=48.24 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-HHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLI 439 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll 439 (857)
.+|..+|+.-.+..-++.|+.+|-+..+.+ +.++..+++++|.-++. |+...|..+|+-=.. . -||... ..-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~-f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--K-FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--h-CCCchHHHHHHH
Confidence 357889999899999999999999999988 66788899999987765 677789999886443 2 244433 35566
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~--~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~ 517 (857)
.-+...++-+.|+.+|+.....+..+ -..|..||+-=..-|+...|..+=+.|.. +.|...+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---------------~~pQen~~ 538 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---------------LVPQENLI 538 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---------------HcCcHhHH
Confidence 77788899999999999766644445 67899999999999999999999888887 44776666
Q ss_pred hhhHHHHHhc
Q 003016 518 SSMLEASATA 527 (857)
Q Consensus 518 ~~ll~a~~~~ 527 (857)
....+-|+-.
T Consensus 539 evF~Sry~ik 548 (660)
T COG5107 539 EVFTSRYAIK 548 (660)
T ss_pred HHHHHHHhhh
Confidence 6666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.9 Score=38.08 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 261 YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 261 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
-|++..--.|..+..+.|+..+|...|++..... ..-|....-.+-++....+++..|...++.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4777777788889999999999999999887654 6667777777888888889999999998888
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003016 341 RKSG---LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 417 (857)
Q Consensus 341 ~~~g---~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~ 417 (857)
.+.. -.||.. -.+.+.|...|...+|+.-|+.....-.-|....|. -..+.+.|+.++|..
T Consensus 151 ~e~~pa~r~pd~~--------------Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~a 214 (251)
T COG4700 151 MEYNPAFRSPDGH--------------LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANA 214 (251)
T ss_pred hhcCCccCCCCch--------------HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHH
Confidence 7753 455554 346677788888888888888776543333332222 223456666555544
Q ss_pred HH
Q 003016 418 VV 419 (857)
Q Consensus 418 l~ 419 (857)
-+
T Consensus 215 q~ 216 (251)
T COG4700 215 QY 216 (251)
T ss_pred HH
Confidence 33
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.27 Score=39.17 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..+.+.|++++|...|+...+. .+-+...|..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555542 112344555555555555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.41 Score=45.36 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH---
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL--- 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~--- 542 (857)
.+...++..+...|++++|..+...+.... | |...|..+|.++...|+...|.++|+.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 355677778888999999999999988854 5 778889999999999999999998887753
Q ss_pred --cCCCCCHHH
Q 003016 543 --SGCQLDQTK 551 (857)
Q Consensus 543 --~g~~pd~~t 551 (857)
.|+.|+..+
T Consensus 128 ~elg~~Ps~~~ 138 (146)
T PF03704_consen 128 EELGIEPSPET 138 (146)
T ss_dssp HHHS----HHH
T ss_pred HHhCcCcCHHH
Confidence 378787664
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.36 E-value=16 Score=40.62 Aligned_cols=389 Identities=11% Similarity=0.044 Sum_probs=206.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH--H
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDL--KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL--G 275 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~--~ 275 (857)
+-+.+++.+|..+|..+.+....... ...+..+.+|++|... +.+..........+.. | ...|-.+..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence 34568889999999888765433210 1245567788888754 4555555566666543 2 33455555443 3
Q ss_pred hcCCHHHHHHHHHHHHcC--CC-hhhhhh-hhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC
Q 003016 276 QVGLLKELVKLIERMRQK--PS-KRIKNM-HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL----KP 347 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~--g~-~~l~~m-~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p 347 (857)
+.+.+++|++.+..-... +. .++++. ..+ .-+|-.-=+..+.+....|.+.+++.++++|...=+ .-
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 668888888877665443 21 111110 011 123333445566777889999999999988876433 36
Q ss_pred CHHHHHHHHHHHH---------------HhHHHHHHHHHHHcCCHHH---------HHHHHHH-----------------
Q 003016 348 SAATYGLAMESYR---------------RCLLKVLVRAFWEEGKINE---------AVAAVRN----------------- 386 (857)
Q Consensus 348 d~~t~~~ll~~~~---------------~~~~~~Li~~y~k~g~~~~---------A~~lf~~----------------- 386 (857)
+..+|+.++-.++ ..-|--+|-.|-+.=+.-+ +.+++..
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 7788876443333 1122233333333211111 1122211
Q ss_pred -----HhhcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----CcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 387 -----MEQRGVVGTAS-VYYELACCLCNNGRWQDAMLVVEKIKSLRHSK----PLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 387 -----m~~~~~~~d~~-t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~----pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
-.+.-+.|+-. +...|+..+.+ +.+++..+-+.+-. ..+. --..+|..++..+.+.++...|.+.+.
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~-~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS-SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12222334311 12233333333 44444444443333 1111 123467788888888777777777665
Q ss_pred HHhh---C------C-----------CCCHHHHHHH--------------------HHH-------HHhcCC-HHHHHHH
Q 003016 457 HMKD---H------C-----------EPNIGTVNAM--------------------LKV-------YSRNDM-FSKAKEL 488 (857)
Q Consensus 457 ~m~~---~------~-----------~p~~~~~~~l--------------------i~~-------~~~~g~-~~~A~~l 488 (857)
-+.. + + .-|-..++.+ ++- +-+.|. -++|+++
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 5432 0 0 0122222111 111 112333 5677777
Q ss_pred HHHHHHcCCCCccccCCCCCCCCC-CHhHhh----hhHHHHHhc---CCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 003016 489 FEETTRANSSGYTFLSGDGAPLKP-DEYTYS----SMLEASATA---HQWEYFEYVYKGMALSGCQLDQ----TKHAWLL 556 (857)
Q Consensus 489 f~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~----~ll~a~~~~---g~~~~a~~l~~~m~~~g~~pd~----~t~~~Ll 556 (857)
++.... +.| |...-| .+=.+|... ..+..-..+-+-+.+.|+.|-. ..-|.|-
T Consensus 403 Lk~il~---------------ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 403 LKLILQ---------------FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHHHH---------------hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 777765 334 222222 222333333 2333333444444556777643 3667777
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHH
Q 003016 557 VE--ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWT 623 (857)
Q Consensus 557 ~~--~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~ 623 (857)
+| +...|++.++.-+-.-+.+ +.|++.+|..+--.+....++++|.+.+..+ .|+..++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 77 4567888888776655554 6788888887666667778999999999877 34555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=20 Score=41.69 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc-CC-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCC
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK-DK-----RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY 261 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~-~~-----~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~ 261 (857)
|.+..|..+.......-.++.|...|-..-... .+ +...+...-.+=|.+| -|++++|.++|-+|-+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~dr----- 762 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADR----- 762 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccch-----
Confidence 666666666655555555555555553321000 00 0000111222223333 3788888888888766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003016 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 262 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~ 341 (857)
+|. .|..+.+.|++-.+.++++. .|+.. .-..-...|+.+-..++....|++|.+.+..-.
T Consensus 763 rDL-----Aielr~klgDwfrV~qL~r~---g~~d~-----------dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 763 RDL-----AIELRKKLGDWFRVYQLIRN---GGSDD-----------DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhh-----hHHHHHhhhhHHHHHHHHHc---cCCCc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 332 34555566666665555432 11000 001113456666666666666766666665432
Q ss_pred HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 342 KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 342 ~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
.. ...+.+|.+...+++-+.+-..+++.. ...-.|..++...|.-++|.+.|-+
T Consensus 824 ~~---------------------e~~~ecly~le~f~~LE~la~~Lpe~s-----~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 824 DT---------------------ENQIECLYRLELFGELEVLARTLPEDS-----ELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ch---------------------HhHHHHHHHHHhhhhHHHHHHhcCccc-----chHHHHHHHHHhhchHHHHHHHHHh
Confidence 11 234444444444444444444443322 1233445555555555555554433
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH--------------HHHHHHHHhcCCHHHHHH
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV--------------NAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~ 487 (857)
-.. | -+.+..|....++.+|.++-+...- |.+.+. ---|..+-+.|+.-.|-+
T Consensus 878 ~s~-----p-----kaAv~tCv~LnQW~~avelaq~~~l---~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daar 944 (1189)
T KOG2041|consen 878 RSL-----P-----KAAVHTCVELNQWGEAVELAQRFQL---PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAAR 944 (1189)
T ss_pred ccC-----c-----HHHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHH
Confidence 211 1 1223344444445444444333221 222111 112455667777777777
Q ss_pred HHHHHHHcC
Q 003016 488 LFEETTRAN 496 (857)
Q Consensus 488 lf~~M~~~g 496 (857)
++.+|.+..
T Consensus 945 ll~qmae~e 953 (1189)
T KOG2041|consen 945 LLSQMAERE 953 (1189)
T ss_pred HHHHHhHHH
Confidence 777776543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.4 Score=38.66 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH-QWKGVFWVFKQLR 341 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g-~~~~A~~l~~~m~ 341 (857)
+..+|..+...+.+.|++++|+..|.+..+.. +-+...|..+-.+|...| ++++|++.++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788899999999999999999999988753 446778888888899999 7999999988876
Q ss_pred Hc
Q 003016 342 KS 343 (857)
Q Consensus 342 ~~ 343 (857)
+.
T Consensus 66 ~l 67 (69)
T PF13414_consen 66 KL 67 (69)
T ss_dssp HH
T ss_pred Hc
Confidence 53
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.6 Score=39.23 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=60.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.+-..+...|++++|..+|+.+... .|....| |-.|--+|-..|++++|...|......++ -|...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y-----------~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~ 105 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDY-----------WFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQA 105 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchH
Confidence 3444456677777777777777653 5666655 56677777777777777777777665553 34444
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+-.+-.++...|+.+.|..-|+....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666777777777777777766555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=25 Score=40.97 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~ 282 (857)
.|.+++|.+++-.+-+ +| ..|.++.+.|++-...++++.=.....-.--...|+.+...++....+++
T Consensus 747 ~g~feeaek~yld~dr-------rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADR-------RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccch-------hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888765522 23 34567777788776666654321110000114577777777777777777
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
|.+.|..-... ...+.++.+..++++-..+-..+ +-|....
T Consensus 815 A~~yY~~~~~~------------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~ll---------- 855 (1189)
T KOG2041|consen 815 AAKYYSYCGDT------------------------ENQIECLYRLELFGELEVLARTL-----PEDSELL---------- 855 (1189)
T ss_pred HHHHHHhccch------------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchH----------
Confidence 77777654211 12344444444444433333222 1222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH-------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF------- 435 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~------- 435 (857)
-.+.+++...|.-++|.+.|-+-.. | -+.+..|....+|.+|.++-+..+- |...|.
T Consensus 856 --p~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tliak~aaq 919 (1189)
T KOG2041|consen 856 --PVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTLIAKQAAQ 919 (1189)
T ss_pred --HHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHH
Confidence 5666777777777777776654321 1 1234556666777777776544322 222221
Q ss_pred -------HHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 436 -------TGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 436 -------~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.--|..+.+.|..-+|-+++.+|.+
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1123445667777777777777754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.56 Score=37.75 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND-MFSKAKELFEETTR 494 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~lf~~M~~ 494 (857)
|..+-..+...|++++|...|....+-.+.+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3344444444444444444444444422334455555555555555 45555555555443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.9 Score=45.26 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
...|..-+..+.+.|++++|...|+.+.... |+. ..+-.+..+|...|+++.|...|..+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666677788999999999888755 543 244556667777788888888888877
Q ss_pred HcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 542 LSGCQLD----QTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 542 ~~g~~pd----~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+. .|+ ...+..+...|...|+.++|..+|+.+.+.
T Consensus 208 ~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 208 KN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 122 223333444566777777777777776653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.21 E-value=19 Score=39.51 Aligned_cols=151 Identities=13% Similarity=0.029 Sum_probs=93.7
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhh
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK--VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 519 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~--~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ 519 (857)
+.-.|+.++|.++--.+.+--..+ .+...+. ++--.++.+.|...|.+-...+ ||...--+
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---------------pdh~~sk~ 241 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD---------------PDHQKSKS 241 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccC---------------hhhhhHHh
Confidence 345677777776666655521112 2222222 2334567788888888777654 65543222
Q ss_pred hH-------------HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 520 ML-------------EASATAHQWEYFEYVYKGMALS---GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 520 ll-------------~a~~~~g~~~~a~~l~~~m~~~---g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
+- +-..+.|++..|.+.|.+.+.. ...|+...|...-....+.|+..+|..--+...+.. +
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~ 318 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---S 318 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---H
Confidence 21 2245679999999999998852 344445566666666789999999998887776532 2
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHhhh
Q 003016 584 PLFFTEMLIQAIV--QSNYEKAVALINAMAY 612 (857)
Q Consensus 584 ~~~~~~li~~~~~--~g~~~~A~~l~~~M~~ 612 (857)
..++..+.++-|. .+.+++|++-+++..+
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344445554444 3889999998888543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.8 Score=45.54 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
...|+..+..+.+.|++++|...|+.+... .|+. ..+-.+..+|...|++++|...|..+.....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-------- 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-------- 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------
Confidence 456777777667778999999999998875 3543 4677788888999999999999999876420
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
........+-.+...+...|+.+.|..+|+.+.+.-
T Consensus 212 -----~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 -----KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred -----CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 011224445555666778899999999999888763
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.12 E-value=18 Score=39.77 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH----CEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~----~~p~~~~~~~li~~~~~---~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
.++-+|....+++...++.+.+..- .......--...-++-+ .|+.++|++++..+....
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------------- 212 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------------- 212 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-------------
Confidence 4444577777777777777777662 11112222233334445 678888888887754443
Q ss_pred CCCCHhHhhhhHHHHHhc---------CCHHHHHHHHHHHH
Q 003016 510 LKPDEYTYSSMLEASATA---------HQWEYFEYVYKGMA 541 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~---------g~~~~a~~l~~~m~ 541 (857)
-.++..||..+...|-.. ...+.|...|.+.-
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 345555665544443321 23556666665544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.10 E-value=5.6 Score=37.22 Aligned_cols=126 Identities=10% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+|..+.+.+.......+++.+...+. .+....|.+|..|++... .+.+..+.. ..+.+....++..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 5678888888999999999999888774 677789999999998753 444444442 1334555668888999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
.+.++++.-++..+.. |...+..+... ++.+.|.+++.+- -+...|..++..
T Consensus 82 ~~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~-------------------~~~~lw~~~~~~ 134 (140)
T smart00299 82 AKLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ-------------------NNPELWAEVLKA 134 (140)
T ss_pred cCcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC-------------------CCHHHHHHHHHH
Confidence 9999999988888754 33344444445 7888888887752 245577777766
Q ss_pred HHh
Q 003016 524 SAT 526 (857)
Q Consensus 524 ~~~ 526 (857)
|..
T Consensus 135 ~l~ 137 (140)
T smart00299 135 LLD 137 (140)
T ss_pred HHc
Confidence 543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.08 E-value=1 Score=46.34 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-NEAVAAVRNME 388 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-~~A~~lf~~m~ 388 (857)
+-++.++++|...|+.||..+- ..|++++.+.+.. .+..++.-.|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e------------~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIE------------DILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHH------------HHHHHHhccccccHHHHHHHHHhhh
Confidence 4478899999999999999987 7788888877653 33444444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.07 E-value=35 Score=42.47 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCCHhHhhhhHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003016 510 LKPDEYTYSSMLEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~ 585 (857)
.+||...+..+..+|+.+ +.+++|.-+|+..-+ ..--+.+|-.+|+|.+|+.+-..+... -+..
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~ 998 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDEL 998 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHH
Confidence 457777777776666554 566666655553211 122356677778888887777766432 1221
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 586 --FFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 586 --~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+-..|+.-+...+++-+|-++..+..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22567777888888888888877763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.6 Score=44.64 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFK-QLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~-~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
...-.++++.+.++.+ .-.-..++++. .+.++..+-+.|..+.|+++-..-..+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~--------------~~~i~~fL~~~G~~e~AL~~~~D~~~r----------- 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQ--------------GQSIARFLEKKGYPELALQFVTDPDHR----------- 324 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHH--------------HHHHHHHHHHTT-HHHHHHHSS-HHHH-----------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhH--------------HHHHHHHHHHCCCHHHHHhhcCChHHH-----------
Confidence 3455788888766664 11111122121 278899999999999999886543322
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
.....+.|+++.|.++- .-..+...|..|-....+.|+++.|.+.|..... |..|+-.|.-.|+
T Consensus 325 -FeLAl~lg~L~~A~~~a-------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 325 -FELALQLGNLDIALEIA-------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD 388 (443)
T ss_dssp -HHHHHHCT-HHHHHHHC-------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred -hHHHHhcCCHHHHHHHH-------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence 33456889999998873 3445778999999999999999999999998876 7888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
.+.-.++-+.....| -++....++.-.|+.++..+++.+
T Consensus 389 ~~~L~kl~~~a~~~~-------------------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 389 REKLSKLAKIAEERG-------------------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHHTT--------------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-------------------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877776655 356666677777888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.98 Score=36.75 Aligned_cols=57 Identities=5% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..|.+.++++.|.++++.+..-.+.+...|...-.+|.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456677777777777777777555567777778888888888888888888887755
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.17 E-value=11 Score=35.29 Aligned_cols=125 Identities=11% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
..+|..+.+.+....+..+++.+...+ . .+....+.++..|++... ......+.. .++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-------------~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~ 69 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-------------S-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNH 69 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-------------c-cchhHHHHHHHHHHHHCH-HHHHHHHHh------cccc
Confidence 456666667777777777777776654 2 345566677777776532 333333331 1223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ-SNYEKAVALINAMAYAPFHITERQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~-g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a 628 (857)
.....++..|.+.+.++++..++..+.. |...+..+... ++++.|.+++.+- -+...|..++..
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 3334466667777777777777766532 33344444444 6777777766652 144466666655
Q ss_pred hh
Q 003016 629 NE 630 (857)
Q Consensus 629 ~~ 630 (857)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=91.08 E-value=18 Score=36.30 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+...|++.+|...|+.+.....-.| -....-.++.++-+.|+++.|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677777777777665421111 1334445566666777777777777776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.91 E-value=5.5 Score=45.25 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 157 AIRVLVDRLSEREMTAKNWKFVR-IMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 157 ~~~~l~~~l~~~~~~~~A~~l~~-~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.....|....-+++++++....+ .-.-.. ......+.+++-+.+.|..+.|+++.. |. ..=.
T Consensus 263 ~~~~~fk~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~------------D~---~~rF 325 (443)
T PF04053_consen 263 LSELEFKTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVT------------DP---DHRF 325 (443)
T ss_dssp HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-------------H---HHHH
T ss_pred HHHHHHHHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcC------------Ch---HHHh
Confidence 33444444445555555544443 111111 113334555555555555555555532 11 1112
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
....++|+++.|.++-.+. .+...|..|.....+.|+++-|.+.|.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2334455555555443222 34445555555555555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.83 E-value=9.9 Score=43.75 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH------HHHHHHHHHHHH----cCChhHHHHHHHHhHHcCCCC
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR------FVYTKLLAILGK----AGRPHEALRIFNLMLEDCNLY 261 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~------~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~~gi~ 261 (857)
.+..+++..+-.||=+.|++.+....+. .....+ -.|...+..++- ....+.|.+++..+..+ .
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~---~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---y 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS---ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---Y 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---C
Confidence 4556677777778888888888876542 111122 234444444433 45678899999999986 4
Q ss_pred CCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 262 PDIAAYHSVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 262 pd~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
|+..-|...-. .+...|++++|.+.|+...... .. ..+.....+--+.-.+.-..+|++|.+.|..+
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~-----------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SE-----------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hh-----------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 88888766654 5567799999999999865422 00 12233444445666678889999999999999
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH-------HHHHHHHHHHh
Q 003016 341 RKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-------NEAVAAVRNME 388 (857)
Q Consensus 341 ~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-------~~A~~lf~~m~ 388 (857)
.+.. ..+-.++| ....+|...|+. ++|.++|.+.+
T Consensus 332 ~~~s~WSka~Y~Y-------------~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 332 LKESKWSKAFYAY-------------LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhccccHHHHHHH-------------HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8753 22223333 233344455666 77777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=44 Score=40.07 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL----GQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
...-|+++.+...++.|..+-..-. -|..+-..+...| -+.|++++|...|-+-...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------------- 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------------- 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-------------
Confidence 4456777777788888877755432 3444444444444 3678889888888776543
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
+.|. .+|.-|.....+..--.+++.+.+.|+.-...| +.|+++|.+.++.+.-.++.+.
T Consensus 398 ---le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-------------tlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 398 ---LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-------------TLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred ---CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-------------HHHHHHHHHhcchHHHHHHHhc
Confidence 4443 256666666667777778888888888776666 6788899998888888777776
Q ss_pred HhhcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 387 MEQRGV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 387 m~~~~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
-. .|. ..|. ...+..+-+.+-.++|..+-..... +......++ -..+++++|.+.+..++
T Consensus 457 ~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 457 CD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKK------HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred CC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66 332 2232 2345566666666666554333211 222333332 34566777777776664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.73 E-value=11 Score=34.55 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC----------------CCHHHHH
Q 003016 526 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEI----------------PHPLFFT 588 (857)
Q Consensus 526 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~----------------p~~~~~~ 588 (857)
..|.++++.++..+...+ .+..-||.+|.-....-+-+-..++++.+-.- .+. .+.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 348888899888887764 24455555554444444444444444443221 111 1334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 589 EMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.-++.+..+|+-+.-.++++.+.. .-+|++..+-.+-.|+.+.|+...+..+++...+.|+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 667788888888888888888754 45788889999999999999999999999999999976
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.99 Score=37.35 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLED---CNL-YPD-IAAYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi-~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
.+|+.+-..|...|++++|+..|++...- .|- .|+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777665431 111 122 4567777777777788888877777654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.3 Score=36.07 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=42.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
..|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888776543 455677778888888888888888888776
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.17 E-value=14 Score=35.82 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-- 563 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-- 563 (857)
.+.++.+...+ +.|+...|..++..+.+.|...... .++..++-+|.......+-.+....
T Consensus 14 lEYirSl~~~~-------------i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~ 76 (167)
T PF07035_consen 14 LEYIRSLNQHN-------------IPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPP 76 (167)
T ss_pred HHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChH
Confidence 34555566666 8899999999999999999876544 5555678888776655553332211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHH
Q 003016 564 KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLN 643 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~ 643 (857)
-..-|.+.+.++.. .+..++..+...|++-+|+++.+.... .+...-..++.|....+|......+++
T Consensus 77 ~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 77 AYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 12334444444431 367788899999999999999988632 122233567888888888887777777
Q ss_pred HHHhCCC
Q 003016 644 ALCNCNA 650 (857)
Q Consensus 644 ~m~~~g~ 650 (857)
.+.+.+.
T Consensus 145 ff~~~n~ 151 (167)
T PF07035_consen 145 FFEERNL 151 (167)
T ss_pred HHHHhhH
Confidence 7776553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.15 E-value=9.5 Score=43.87 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-----t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
...++....-.|+-+.+++++.+-.+..++.-... +|..++..++. ...++.|.++++.+.... |+...|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 44455555556666666666665544223322211 13333332222 344555666666655532 333333
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHH
Q 003016 470 NAM-LKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 470 ~~l-i~~~~~~g~~~~A~~lf~~M~ 493 (857)
... -..+...|++++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 222 233344566666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.54 E-value=13 Score=39.81 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc--C----CCHHHHHHHHHHHhh-C---CCCCHHHHHHHHHHHHhcCC-
Q 003016 413 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMD--G----GHIDDCISIFQHMKD-H---CEPNIGTVNAMLKVYSRNDM- 481 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~--~----g~~~~A~~if~~m~~-~---~~p~~~~~~~li~~~~~~g~- 481 (857)
++.+.+++.|.+ .|++-+.++|.+....... . -.+..+..+|+.|++ + ..++-..+.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 344556666766 6777776666553322222 1 234567777777776 2 34555566666554 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc-CC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 482 ---FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA-HQ--WEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 482 ---~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~-g~--~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
.+.+..+|+.+...| +.. |..-+.+-+-+++.. .. ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~-------------f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAG-------------FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhC-------------CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 244566666666655 444 222222222222222 11 3356666666766676666665544
Q ss_pred H
Q 003016 555 L 555 (857)
Q Consensus 555 L 555 (857)
+
T Consensus 223 l 223 (297)
T PF13170_consen 223 L 223 (297)
T ss_pred H
Confidence 4
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.50 E-value=16 Score=33.67 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..+.++.+-+ .-| ...||++.....
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFD----------ISKCGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-----------GGG-S-THHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------chhhcchHHHHH
Confidence 35666666666665543 2333355555555555555555555555433 111 123455555444
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
.+-.+. .+....+.-++.+.+.|.-+.-.++..++.+. -+++......+-.||.+.|+..++
T Consensus 78 C~~~~n----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--------------~~~~p~~L~kia~Ay~klg~~r~~ 139 (161)
T PF09205_consen 78 CYAKRN----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN--------------EEINPEFLVKIANAYKKLGNTREA 139 (161)
T ss_dssp HHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH-------------------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhc----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------------cCCCHHHHHHHHHHHHHhcchhhH
Confidence 444433 34556667777788888888888888877643 246677777778888888888888
Q ss_pred HHHHHHHHHcCC
Q 003016 534 EYVYKGMALSGC 545 (857)
Q Consensus 534 ~~l~~~m~~~g~ 545 (857)
.+++.+.-+.|+
T Consensus 140 ~ell~~ACekG~ 151 (161)
T PF09205_consen 140 NELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhch
Confidence 888888777775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=89.42 E-value=34 Score=37.76 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---cCChhH
Q 003016 173 KNWKFVRIMNQS-G--LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---AGRPHE 246 (857)
Q Consensus 173 ~A~~l~~~M~~~-g--~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k---~g~~~~ 246 (857)
+..+.+..|+.. + -..+..+...++-+|-...+++..+++.+.+..........+..+--...-++.+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 334445555543 1 1234445556666788889999999999988554211111122333334445566 899999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~ 275 (857)
|++++..+... .-.++..+|..+...|-
T Consensus 201 Al~il~~~l~~-~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 201 ALQILLPVLES-DENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHhc-cCCCChHHHHHHHHHHH
Confidence 99999985443 44578888888877664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=4.2 Score=45.41 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 225 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+.+...|+.+-.+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999776 34764 46999999999999999999999998764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.7 Score=35.84 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
+|+.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=5.2 Score=44.65 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...|+.++|+..+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---------------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666777777777777777777777776663 3653 3467777777777777777777777
Q ss_pred HHHc
Q 003016 540 MALS 543 (857)
Q Consensus 540 m~~~ 543 (857)
.++.
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 7653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.34 E-value=27 Score=34.21 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
.+.|+...-..|..++...|+..+|...|++...- .+..|..+.-.+..+....+++..|...++.+.+-..-..++
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 34688888888999999999999999999988653 233477788888888888999999999999987732111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
.+.-.+...|...|.+..|..-|+.....-
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 456667788999999999999999987743
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.94 E-value=27 Score=33.81 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=89.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHh
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG--GHIDDCISIFQHMK 459 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~--g~~~~A~~if~~m~ 459 (857)
+.+..+.+.++.|+...|..+|..+.+.|++..... +.. .++-+|.......+-.+... .-..-|.+.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQ-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHh-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 455566678899999999999999999998765444 444 57777776665555443321 12344455555444
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 460 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 460 ~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
. .+..++..+...|++-+|+++.+.... .+...-..++.|....++...-..+|+-
T Consensus 90 ~-------~~~~iievLL~~g~vl~ALr~ar~~~~-----------------~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 90 T-------AYEEIIEVLLSKGQVLEALRYARQYHK-----------------VDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred h-------hHHHHHHHHHhCCCHHHHHHHHHHcCC-----------------cccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 467778889999999999999887532 2223335567777777777777777766
Q ss_pred HHHc
Q 003016 540 MALS 543 (857)
Q Consensus 540 m~~~ 543 (857)
....
T Consensus 146 f~~~ 149 (167)
T PF07035_consen 146 FEER 149 (167)
T ss_pred HHHh
Confidence 6553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.30 E-value=24 Score=37.15 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG---LLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
|..-|-.|-..|...|+++.|..-|....+-.| ++...+..+..++.... ...++..+|+++....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--------- 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--------- 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---------
Confidence 556666666666666666666666666655322 34444444444433322 2345666666666532
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+-|+.+-..+-..+...|++.+|...|+.|.+.
T Consensus 224 -------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 -------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 223444444444566666666666666666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.99 E-value=52 Score=36.01 Aligned_cols=215 Identities=15% Similarity=0.143 Sum_probs=119.1
Q ss_pred hhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 244 ~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
+..+.+.|..-+.+ .-|.+|-.++.. .|+-..|.++-.+-.+. +..|..-.-.++
T Consensus 69 P~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~l----------------lssDqepLIhlL 125 (531)
T COG3898 69 PYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKL----------------LSSDQEPLIHLL 125 (531)
T ss_pred cHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh----------------hhccchHHHHHH
Confidence 44556666665543 245556555543 46667777766655433 455666566666
Q ss_pred HHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 322 NACV--PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 322 ~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
.+-. -.|+++.|.+-|+.|... |.....+ ...|.-.--+.|..+.|.+.-+..-..-... ...+
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG----------LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~ 191 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLDD---PETRLLG----------LRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAA 191 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh----------HHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHH
Confidence 6543 468899999999988752 3332221 1233333346688888887777665543221 2346
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHc---CCCHHHHHHHHHHHhhCCCCCHHHHH-HHH
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMD---GGHIDDCISIFQHMKDHCEPNIGTVN-AML 473 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~---~g~~~~A~~if~~m~~~~~p~~~~~~-~li 473 (857)
.+.+...|..|+|+.|+++++.-+....+.++..- -..|+.+-+. ..+...|...-.+.. ++.||.+--. .--
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-KL~pdlvPaav~AA 270 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN-KLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCccchHHHHHH
Confidence 77888999999999999999887774455555432 2223322211 112222322222222 1334432221 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|.+.|+..++-.+++.+-+..
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC
Confidence 45566666666666666666544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.70 E-value=13 Score=40.47 Aligned_cols=287 Identities=12% Similarity=0.034 Sum_probs=139.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--H--cCCCC
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR--K--SGLKP 347 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~--~--~g~~p 347 (857)
.-+++.|+......+|+...+.|... +..=..+|.-|-.+|.-.+++++|++++..=+ . .|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeD------------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTED------------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchH------------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 34789999999999999999887211 11112346667777777888999988765421 0 01000
Q ss_pred C-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH----hhcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 348 S-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM----EQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 348 d-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m----~~~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
. ..+. ..|-+.+--.|.+++|.-.-.+- .+.| -+.....+..+...|...|+.-.-..
T Consensus 93 GEAKss------------gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~---- 156 (639)
T KOG1130|consen 93 GEAKSS------------GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA---- 156 (639)
T ss_pred cccccc------------ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----
Confidence 0 0000 12223333345555554332211 1111 11122234445555655554210000
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-----H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT-- 493 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~-- 493 (857)
-++ .|-.++.++ ..++.|.++|.+-.+ + -..--..|..|-..|.-.|+++.|+..-+.=.
T Consensus 157 pee-~g~f~~ev~-----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i 224 (639)
T KOG1130|consen 157 PEE-KGAFNAEVT-----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI 224 (639)
T ss_pred hhh-cccccHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH
Confidence 000 122222222 011222222222111 0 00011234444555555667777765544321
Q ss_pred --HcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHH
Q 003016 494 --RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GC-QLDQTKHAWLLVEASRAGKCH 566 (857)
Q Consensus 494 --~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~-~pd~~t~~~Ll~~~~~~G~~~ 566 (857)
+-| .-......+..+-+++.-.|+++.|.+.|+.-... |- ........+|-+.|.-...++
T Consensus 225 a~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~ 292 (639)
T KOG1130|consen 225 AQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ 292 (639)
T ss_pred HHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence 111 00112235666667777777777777777654432 21 112234556666676667777
Q ss_pred HHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 567 LLEHAFDSLLE----A-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 567 ~A~~~~~~m~~----~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.|+.++..=.. . ...-....+++|-.++-..|..++|+.+.+.-
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777753221 1 12224567777888888888888888777664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.17 E-value=52 Score=35.27 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHH--cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh--cCCH----HHHHHHHHHHHcCCChhhh
Q 003016 228 RFVYTKLLAILGK--AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VGLL----KELVKLIERMRQKPSKRIK 299 (857)
Q Consensus 228 ~~~~n~Li~~y~k--~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~--~g~~----~~A~~l~~~m~~~g~~~l~ 299 (857)
..++.+++..... ...+++...+++.|.+. |+..+..+|-+....... ..++ ..|..+|+.|++.-..
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f--- 135 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF--- 135 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc---
Confidence 3455555444332 11234556778888884 899998888774433333 3333 5689999999987411
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 003016 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQW----KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375 (857)
Q Consensus 300 ~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g 375 (857)
.-.++-..+..++.. ...+. +.+..+|+.+.+.|+..+...... +.++.......
T Consensus 136 ---------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~L----------S~iLaL~~~~~ 194 (297)
T PF13170_consen 136 ---------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFL----------SHILALSEGDD 194 (297)
T ss_pred ---------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHH----------HHHHHhccccc
Confidence 135667778777765 33333 567788889999898776654310 22222221111
Q ss_pred C--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhcCCC
Q 003016 376 K--INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW-----QDAMLVVEKIKSLRHS 428 (857)
Q Consensus 376 ~--~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~-----~~A~~l~~~m~~~~g~ 428 (857)
. +..+.++++.+.+.|+.+....|.. +..++-.+.. +...++.+.+.+..+.
T Consensus 195 ~~~v~r~~~l~~~l~~~~~kik~~~yp~-lGlLall~~~~~~~~~~i~ev~~~L~~~k~~ 253 (297)
T PF13170_consen 195 QEKVARVIELYNALKKNGVKIKYMHYPT-LGLLALLEDPEEKIVEEIKEVIDELKEQKGF 253 (297)
T ss_pred hHHHHHHHHHHHHHHHcCCccccccccH-HHHHHhcCCchHHHHHHHHHHHHHHhhCccc
Confidence 1 4578888999999998877665554 3444433333 3334444445444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.80 E-value=28 Score=38.10 Aligned_cols=132 Identities=11% Similarity=-0.088 Sum_probs=85.7
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCH
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYKGMAL----SGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLE----AG-EIPHP 584 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~~m~~----~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~----~g-i~p~~ 584 (857)
..|..|-+.|.-.|+++.|+..++.-.. .|-.. ....+..|-+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666777777999999988765432 23222 234777888888889999999999886443 22 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh----hCC-CccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 585 LFFTEMLIQAIVQSNYEKAVALINAMA----YAP-FHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~l~~~M~----~~~-~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
.+..+|-..|.--..+++|+..+.+-+ +.+ ..-....+-+|-.++...|..+.|..+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555667777777788899988877632 112 11223456667777777777777766655444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.66 E-value=66 Score=35.97 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=198.2
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPD------IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
+-+.+++.+|.++|.++-.+ +..+ .+.-+.+|++|... +.+.....+....+..
T Consensus 16 Lqkq~~~~esEkifskI~~e--~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~----------------- 75 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE--KESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF----------------- 75 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH--hhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-----------------
Confidence 35678999999999998774 2233 23356778888654 4555555555555432
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHc--CCCCCHHHHH--HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 312 PDLVVYNAVLNA--CVPSHQWKGVFWVFKQLRKS--GLKPSAATYG--LAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 312 pd~~t~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~--~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
| ...|-.+..+ +-+.+.+..|.+.+..-... +-.|.----+ -++..+ ..-+..++...+.|.+.+++.+++
T Consensus 76 ~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df--~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 76 G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF--FLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH--HHHHHHHHHHHhcCCcchHHHHHH
Confidence 2 2234444444 45788999999988887655 3332211100 011111 112778888889999999999999
Q ss_pred HHhhcCCC----CCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHhcC-----CCCCcHHHHHHHH--
Q 003016 386 NMEQRGVV----GTASVYYELACCLCNNG---------------RWQDAMLVVEKIKSLR-----HSKPLEITFTGLI-- 439 (857)
Q Consensus 386 ~m~~~~~~----~d~~t~~~lI~~~~~~g---------------~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll-- 439 (857)
+|..+=.. -+..+||.++-.+++.= .++.++-..++|.... .+.|-..-+..++
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 98765333 56777877554444321 1222333333333210 1122222111111
Q ss_pred ------------------------------------HHHHcCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHh
Q 003016 440 ------------------------------------ISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 440 ------------------------------------~a~~~~g~~~~A~~if~~m~~-----~~~p~~~~~~~li~~~~~ 478 (857)
..... +.+++..+-+.+.. -...-+.++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 23333332222221 112335667788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH-----------------------------------H
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE-----------------------------------A 523 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~-----------------------------------a 523 (857)
.++..+|.+.+.-+....+..|- . ..+-....+...++. +
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~sv--s---~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISV--S---EKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchh--h---hhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 89888888888776654421110 0 000001111111111 1
Q ss_pred ---HHhcCC-HHHHHHHHHHHHHcCCCCC-HHHHH----HHHHHHH---HcCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 003016 524 ---SATAHQ-WEYFEYVYKGMALSGCQLD-QTKHA----WLLVEAS---RAGKCHLLEHAFDSLLEAGEIP----HPLFF 587 (857)
Q Consensus 524 ---~~~~g~-~~~a~~l~~~m~~~g~~pd-~~t~~----~Ll~~~~---~~G~~~~A~~~~~~m~~~gi~p----~~~~~ 587 (857)
+-+.|. -+.|+++++...+ +.+. ...-| .+=.+|. ....+.+-..+-+-+.+.|++| +...-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 112233 5566666666654 2222 22222 2222332 2233444455555566668776 34455
Q ss_pred HHHHHH--HHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 588 TEMLIQ--AIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 588 ~~li~~--~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
|.|-+| +..+|++.++...-.-+. .+.|++.+|.-+--......+.++|-..+..+.
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 666554 445688888765544443 578888888877667777778888877775543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=84.96 E-value=57 Score=34.62 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=131.9
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CCCC
Q 003016 325 VPSHQWKGVFWVFKQLRKSG--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR--------GVVG 394 (857)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~--------~~~~ 394 (857)
.+.|+.+.|..++.+....- ..|+..-. ++...||.-...+.+..++++|...+++..+- ...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 46799999999998886543 33333322 12233566666666655877777666553221 1222
Q ss_pred C-----HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH
Q 003016 395 T-----ASVYYELACCLCNNGRW---QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 395 d-----~~t~~~lI~~~~~~g~~---~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~ 466 (857)
+ ..+...++.+|...+.. ++|..+++.+....+-+| .++..-+..+.+.++.+.+.+++..|.....-..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 2 34567788888887764 456777777766333333 3444556666669999999999999998644334
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh--hhHH---HHHhc------CCHHH
Q 003016 467 GTVNAMLKVY---SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS--SMLE---ASATA------HQWEY 532 (857)
Q Consensus 467 ~~~~~li~~~---~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~--~ll~---a~~~~------g~~~~ 532 (857)
..+..++..+ .... ...|...+..+.... +.|....|. .++. ..... ..++.
T Consensus 156 ~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r-------------~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~ 221 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKS-PELAAFCLDYLLLNR-------------FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIES 221 (278)
T ss_pred chHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHH-------------hCCChhHHHHHHHHHHHHHHcCCccccchhHHHH
Confidence 4455555544 4444 356666666666554 444332111 1111 11221 12555
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHH
Q 003016 533 FEYVYKGMAL-SGCQLDQTKHAWLLVE-------ASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 533 a~~l~~~m~~-~g~~pd~~t~~~Ll~~-------~~~~G~~~~A~~~~~~m 575 (857)
..+++....+ .+.+.+..+-.++... +.+.+++++|.+.|+-.
T Consensus 222 l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 222 LEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 5555654433 2344444443333322 45778999999988754
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.34 E-value=98 Score=38.78 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVY----SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 463 ~p~~~~~~~li~~~----~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.|+...+..+..+| .+.+++++|.-.|+..-+ ..-.+.+|-..|+|.+|+.+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------------------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------------------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------------------HHHHHHHHHHhccHHHHHHHHH
Confidence 36666655555444 456788888877765422 1235678888899999998888
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 539 GMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 539 ~m~~~g~~pd~~--t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
+|.. .-|.. +-..|+.-+...++.-+|-++..+.... ....+..+++...+++|+.+...-
T Consensus 990 ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 990 QLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 7642 22322 2355666677888888888777665442 334456677777788887776544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.13 E-value=13 Score=40.68 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+++.+.-+|.+.+.+..|++.-......-++|+...----.+|...|+++.|+..|.++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555443344555544445555556666666666666655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.49 E-value=34 Score=36.53 Aligned_cols=84 Identities=6% Similarity=0.039 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH----HHHHHhcCCHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM----LKVYSRNDMFSK 484 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l----i~~~~~~g~~~~ 484 (857)
+|++.+|-..++++.+ ..+.|...+.-.=.+|.-.|+.+.-...++.+.....+|...|.-+ --++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4555555555555554 3444555555555566666666665555555554333444333222 222334566666
Q ss_pred HHHHHHHHHH
Q 003016 485 AKELFEETTR 494 (857)
Q Consensus 485 A~~lf~~M~~ 494 (857)
|.+.-++..+
T Consensus 194 AEk~A~ralq 203 (491)
T KOG2610|consen 194 AEKQADRALQ 203 (491)
T ss_pred HHHHHHhhcc
Confidence 6665555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.21 E-value=46 Score=39.82 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHcC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL-------KELVKLIERMRQK 293 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~-------~~A~~l~~~m~~~ 293 (857)
.+| ++|--+.|||++++|.++...... .+......+...+..|+...+- +....-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 355 466677899999999999866665 3445566777788888775332 4555666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=24 Score=33.94 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~ 553 (857)
-+-..|++++|..+|.-+...+ |... -|..|-.+|-..++++.|...|......+. -|+..+-
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d---------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f 109 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD---------------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVF 109 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccc
Confidence 3456777888888877766543 3222 233444444445777777777776655432 2333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
..-.+|...|+.+.|+..|....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455566677777777777777665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.63 E-value=87 Score=34.96 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
-..+|.+.|..-.+..-++.|..+|-+..+.+. +.++++.++++|.-++. |+..-|..+|+.-..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------------~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-- 460 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------------VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-- 460 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------------CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--
Confidence 345667777777777777888888888777661 45677788887776655 666777777765433
Q ss_pred CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHH
Q 003016 545 CQLDQTKH-AWLLVEASRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQ 621 (857)
Q Consensus 545 ~~pd~~t~-~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~ 621 (857)
.-||...| +-.+.-+.+.++-+.|..+|+...++ +..+ ...|..||.--..-|++..|..+=++|. ...|...+
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~--e~~pQen~ 537 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR--ELVPQENL 537 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH--HHcCcHhH
Confidence 23444333 33444556677777788888754433 1111 3567777777777777777777766664 23455555
Q ss_pred HHHHHHHhhh
Q 003016 622 WTELFESNED 631 (857)
Q Consensus 622 ~~~Ll~a~~~ 631 (857)
...+.+.++.
T Consensus 538 ~evF~Sry~i 547 (660)
T COG5107 538 IEVFTSRYAI 547 (660)
T ss_pred HHHHHHHHhh
Confidence 5555444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.62 E-value=12 Score=39.36 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH----cCCCCCCHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIA 265 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~gi~pd~~ 265 (857)
..++..++.++...|+.+.+...++..+.. ++-+...|-.||.+|.+.|+...|++.|+.+.. ..|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 346778899999999999999999998774 334889999999999999999999999998765 468999988
Q ss_pred HHHHHHHH
Q 003016 266 AYHSVAVT 273 (857)
Q Consensus 266 t~~~li~~ 273 (857)
++......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 88776666
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.64 E-value=88 Score=34.33 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCcCCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC
Q 003016 187 MFTEGQMLKLLKGLGD--KGSWRQAMSVLDWVYGLKDKRDLKSRFV--YTKLLAILGKAGRPHEALRIFNLMLEDCNLYP 262 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~--~g~~~~A~~l~~~~~~~~~~~~~~~~~~--~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p 262 (857)
.-|...+..++.+-.. .|+.+.|++-|+.|... |.... .-.|.-.--+.|..+.|+..-+..-+. -|
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~---Ap 185 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK---AP 185 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh---cc
Confidence 3455555555555433 36666666666666421 11111 111222223446666666655555442 23
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH--HHHHHHHHHh---cCChHHHHHH
Q 003016 263 D-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV--YNAVLNACVP---SHQWKGVFWV 336 (857)
Q Consensus 263 d-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t--~~~li~~~~~---~g~~~~A~~l 336 (857)
. ...|.+.+...+..|+++.|+++++.-+... .+.+|+.- -..|+.+-+. .-+...|...
T Consensus 186 ~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--------------vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 186 QLPWAARATLEARCAAGDWDGALKLVDAQRAAK--------------VIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 2 4556666666677777777777666554432 14444432 2233333221 2233344443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003016 337 FKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 416 (857)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~ 416 (857)
-.+..+ +.||.+-- --.-...+.+.|++.++-.+++.+-+....|+.. ..|....-.+.++
T Consensus 252 A~~a~K--L~pdlvPa-----------av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~ 312 (531)
T COG3898 252 ALEANK--LAPDLVPA-----------AVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTAL 312 (531)
T ss_pred HHHHhh--cCCccchH-----------HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHH
Confidence 333332 33443321 0233467889999999999999998877766542 2344444445555
Q ss_pred HHHHHHHhcCCCCCcH-HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 003016 417 LVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR-NDMFSKAKELFEETTR 494 (857)
Q Consensus 417 ~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~-~g~~~~A~~lf~~M~~ 494 (857)
.-++.......++||. .+...+..+-...|++..|..--+.... ..|....|-.|-+.-.- .|+-.++...+.+-.+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5566655555667765 4566677777888888877765444432 44777777777765544 4999999998888775
Q ss_pred cC
Q 003016 495 AN 496 (857)
Q Consensus 495 ~g 496 (857)
..
T Consensus 392 AP 393 (531)
T COG3898 392 AP 393 (531)
T ss_pred CC
Confidence 43
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=81.48 E-value=23 Score=34.77 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCcHH----HH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLR--HSKPLEI----TF 435 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~--g~~pd~~----t~ 435 (857)
+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+..... +-.++.. +|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 58899999999999999999999998765554 3356778888999999999988888776521 1112222 12
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
..+ ++...+++..|-+.|-....
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccCc
Confidence 222 22347899999988877765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.24 E-value=41 Score=30.98 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (857)
-+++..|+++.|++.|.+.... .+.+...||.--.++--.|+.++|+.-+++..+..-.- ..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trt 113 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRT 113 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chH
Confidence 3577899999999999998874 45688899999999999999999999998887653221 222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 352 ~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
- | ..|----..|-..|+.+.|..=|+...+.|.
T Consensus 114 a------c--qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 114 A------C--QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred H------H--HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 1 0 0112223357778999999999988776663
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.42 E-value=1.1e+02 Score=36.76 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh-------HHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW-------KGVFW 335 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~-------~~A~~ 335 (857)
+...| ++|--|.|+|++++|.++..+.... .......+-..+..|+...+- +....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~----------------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ 173 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ----------------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKL 173 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG----------------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh----------------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 33455 4667788999999999999666544 445555677778888765332 34555
Q ss_pred HHHHHHHcCCCCCHHH
Q 003016 336 VFKQLRKSGLKPSAAT 351 (857)
Q Consensus 336 l~~~m~~~g~~pd~~t 351 (857)
-|+...+.....|.+=
T Consensus 174 ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 174 EYNQRIRNSTDGDPYK 189 (613)
T ss_dssp HHHHHTTT-TTS-HHH
T ss_pred HHHHHhcCCCCCChHH
Confidence 5666555544336554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.29 E-value=74 Score=32.66 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|---..+|-...+++.|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~----------------yEnnrslfhA-------AKayEqaamLake~~kl--- 87 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG----------------YENNRSLFHA-------AKAYEQAAMLAKELSKL--- 87 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH----------------HHhcccHHHH-------HHHHHHHHHHHHHHHHh---
Confidence 444456677777787777766665432 2223322322 23345555566666543
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ--RGVVGTAS--VYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~~d~~--t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
|.++.| ++--..+|..+|..+.|-..+++.-+ .++.|+.. .|.--+..+-..++...|.+++
T Consensus 88 sEvvdl-----------~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~--- 153 (308)
T KOG1585|consen 88 SEVVDL-----------YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY--- 153 (308)
T ss_pred HHHHHH-----------HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---
Confidence 344444 47777888899988888777776432 12333321 1222222222233333333332
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---C--CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---H--CEPNI-GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~--~~p~~-~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+-..+.+...+++|-..|..-.. . ..++. ..|-+.|-.|.-..++..|.+.|+.--..+
T Consensus 154 -------------gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 154 -------------GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred -------------HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2333345556666666555544322 1 12222 345666667777888999999998743322
Q ss_pred CCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 497 SSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 497 ~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
. -..| |..+...||.+|- .|+.+++..+..
T Consensus 221 -----~------f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 221 -----A------FLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred -----c------ccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 0 0222 5678888888874 477777765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 4e-07
Identities = 44/355 (12%), Positives = 86/355 (24%), Gaps = 30/355 (8%)
Query: 146 HPEKRWRSEAEAIRVLVDRLSE---REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGD 202
H K +A V R ++ ++ + + R+ + + F G+ L + L
Sbjct: 7 HHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQV 66
Query: 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP 262
+ + + +LL + L
Sbjct: 67 EPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA-QLSG 125
Query: 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322
+ L L+ + KR L +YNAV+
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------------KLLTLDMYNAVML 173
Query: 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382
+K + +V ++ +GL P +Y A++ R + + +
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR------------QDQDAGTIE 221
Query: 383 AV-RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441
M Q G+ A L + V P T L+
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK-LLRD 280
Query: 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496
+ +K ++ L K +E A
Sbjct: 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR 335
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 5e-07
Identities = 35/262 (13%), Positives = 71/262 (27%), Gaps = 20/262 (7%)
Query: 418 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH----CEPNIGTVNAML 473
S + + + + + NA++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ-WEY 532
++R F + + A L PD +Y++ L+ Q
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAG-------------LTPDLLSYAAALQCMGRQDQDAGT 219
Query: 533 FEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI 592
E + M+ G +L A LL E RA + + ++P P+ +++L
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
Query: 593 QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAAS 652
+ L + ++ EL +S +K + +
Sbjct: 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCV-VSVEKPTLPSKEVKHARKTL 338
Query: 653 SEITVSNLSRALHALCRSEKER 674
+ +AL R K R
Sbjct: 339 KTL-RDQWEKALCRALRETKNR 359
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-05
Identities = 77/585 (13%), Positives = 149/585 (25%), Gaps = 211/585 (36%)
Query: 207 RQAMS--VLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264
+ +S +D + KD + ++ LL+ + E ++ F + N Y +
Sbjct: 43 KSILSKEEIDHIIMSKD-AVSGTLRLFWTLLS------KQEEMVQKFVEEVLRIN-YKFL 94
Query: 265 A-AYHSVAVTLGQVGLLKELVKLIERM-------------RQKPSKRIKNMHRKNWDPVL 310
+ + ++ +R+ R +P +++ P
Sbjct: 95 MSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRP-- 149
Query: 311 EPDLVVY------------NAVLNACVPSHQWKGVFWV------------------FKQL 340
++++ + L+ V +FW+ Q+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 341 RKSGLKPSAATYG---------------LAMESYRRCLLKVL--------VRAFWEEGKI 377
+ S + L + Y CLL VL AF KI
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKI 268
Query: 378 -----NEAVAAVRNMEQRG---VVGTASVYYE---------------------------L 402
+ V + + +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 403 ACCLC------NNGRWQ-----DAMLVVEKIK-SLRHSKPLEI--TFTGLIISSMDGGHI 448
+ W + + I+ SL +P E F L + HI
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
Query: 449 -DDCISIF-QHMKDHCEPNIGTVNAMLK-----------VYSRNDMFSKAKELFEETTRA 495
+S+ + + VN + K S ++ + K E
Sbjct: 388 PTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 496 NSS---GY----TFLSGDGAPLKPDEYTYSSM---LEASATAHQWEYFEYVYKGMALSGC 545
+ S Y TF S D P D+Y YS + L+ + F V+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-------- 497
Query: 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVA 605
LD +L K + H + +G I + L Y+
Sbjct: 498 -LD---FRFL------EQK---IRHDSTAWNASGSILNTL---------QQLKFYKP--- 532
Query: 606 LINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNA 650
+I + N+ + R + +L+ L
Sbjct: 533 ----------YICD---------NDPKYER-LVNAILDFLPKIEE 557
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 857 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.83 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.66 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.61 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.61 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.58 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.55 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.54 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.51 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.49 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.45 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.41 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.33 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.33 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.33 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.31 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.31 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.29 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.23 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.23 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.22 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.22 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.2 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.18 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.18 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.17 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.16 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.16 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.15 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.14 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.14 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.13 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.13 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.11 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.1 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.08 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.08 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.07 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.05 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.04 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.04 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.98 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.93 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.87 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.75 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.7 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.63 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.59 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.55 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.5 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.45 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.43 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.37 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.32 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.3 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.16 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.1 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.04 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.98 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.9 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.75 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.42 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.38 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.15 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.77 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.75 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.75 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.7 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 95.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.65 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 95.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 95.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.74 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.48 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.01 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.93 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 93.13 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.95 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 91.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 90.36 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.48 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 89.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 87.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 87.05 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 84.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 84.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 80.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 80.72 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=341.88 Aligned_cols=464 Identities=9% Similarity=-0.039 Sum_probs=393.1
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
.++..++.++..+.+.|.+++|+.+|++|.. ..|+..++..++.+|...|+++.|..+|+.+... .++..+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-----NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----ccchhHHH
Confidence 5678889999999999999999999999985 4589999999999999999999999999987532 35889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhh
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDC--------------NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRI 298 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~--------------gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l 298 (857)
.++.+|.++|++++|+++|+++.... |..++..+|+.++.+|.+.|++++|.++|++|.+.+....
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999543321 2344689999999999999999999999999987652210
Q ss_pred h---hh-------------------hhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 299 K---NM-------------------HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 299 ~---~m-------------------~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
. .+ +.+.......++..+|+.++..|.+.|++++|.++|++|.+. .++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~---- 308 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL---- 308 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH----
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH----
Confidence 0 00 111111112223345666677888999999999999999876 4677776
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
+.++.+|.+.|++++|..+|++|.+.+.. +..+|+.++.+|.+.|++++|..+|+++.. ..+.+..+++
T Consensus 309 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~ 377 (597)
T 2xpi_A 309 --------LCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWL 377 (597)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHH
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHH
Confidence 89999999999999999999999876633 556799999999999999999999999986 3456788999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t 516 (857)
.+..+|.+.|++++|.++|+.+.+..+.+..+|+.++.+|.+.|++++|+++|++|...+ ..+..+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~ 443 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------------QGTHLP 443 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------TTCSHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------ccchHH
Confidence 999999999999999999999987555678999999999999999999999999998855 237789
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 003016 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIPH--PLFFTEM 590 (857)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p~--~~~~~~l 590 (857)
|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+.+.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999998753 447889999999999999999999999999876 67887 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 591 LIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 591 i~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
..+|.+.|++++|+++++++...+ ..+..+|..+...+...|++++|.+.++.+.+.. |+.+...
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 587 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMAS 587 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHH
Confidence 999999999999999999987543 2367899999999999999999999999999764 4444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=316.35 Aligned_cols=457 Identities=12% Similarity=0.022 Sum_probs=377.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
.++...|+.++..|.+.|+++.|..+|+.+... .|+..+++.++.+|.+.|++++|..+|+.+.. ..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 152 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-----TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSAC 152 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhH
Confidence 367889999999999999999999999999753 25778999999999999999999999999864 2589999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.++.+|.+.|++++|.++|+++...........-...++.+..++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 230 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-- 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999999999999999999999953221100000000011222345579999999999999999999999999999864
Q ss_pred CCHH-HHHHHHHH--------------------------HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 347 PSAA-TYGLAMES--------------------------YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 347 pd~~-t~~~ll~~--------------------------~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
|+.. .+..+... ....+|+.++.+|.+.|++++|.++|++|.+. .++..+|
T Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 4322 22211110 01334566788999999999999999999876 5789999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 479 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~ 479 (857)
+.++.+|.+.|++++|+.+|++|... + +.+..+++.++.+|.+.|++++|..+|+.+.+..+.+..+|+.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999872 2 346778999999999999999999999999886677899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 480 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558 (857)
Q Consensus 480 g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 558 (857)
|++++|.++|+++.... | +..+|+.++.+|...|++++|.++|++|.+.+ +.+..+|+.+..+
T Consensus 387 g~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD---------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp TCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 99999999999998854 5 57799999999999999999999999999753 4477899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCccC--HHHHHHHHHHhhhc
Q 003016 559 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA----PFHIT--ERQWTELFESNEDR 632 (857)
Q Consensus 559 ~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~----~~~p~--~~~~~~Ll~a~~~~ 632 (857)
|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|+++|++|... +..|+ ..+|..+..+|...
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999998753 347899999999999999999999999999765 77888 78999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHhccCchhhhHh
Q 003016 633 ISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSS 678 (857)
Q Consensus 633 g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 678 (857)
|+++.|.++++.+.+.+ |+.+...... ...+...++.+++.+
T Consensus 530 g~~~~A~~~~~~~~~~~--p~~~~~~~~l--~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS--TNDANVHTAI--ALVYLHKKIPGLAIT 571 (597)
T ss_dssp TCHHHHHHHHHHHHHHS--SCCHHHHHHH--HHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHH--HHHHHHhCCHHHHHH
Confidence 99999999999999775 4444333333 334445666777766
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=279.84 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 410 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g 410 (857)
..+..+.+.+.+.++.+..... ++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~-----------l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~ 75 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEAL-----------LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE 75 (501)
T ss_dssp -----------------CHHHH-----------HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHhcccCCCHHH-----------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC
Confidence 3455667788888776655432 38899999999999999999999999999999999999999999876
Q ss_pred C---------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcC
Q 003016 411 R---------WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 411 ~---------~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g 480 (857)
. .++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|
T Consensus 76 ~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 76 AATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred chhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 5 6889999999999 89999999999999999999999999999999998 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 560 (857)
++++|.++|++|.+.| +.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 155 ~~~~A~~l~~~M~~~G-------------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 155 DADKAYEVDAHMVESE-------------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CHHHHHHHHHHHHHTT-------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-------------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred Hc
Q 003016 561 RA 562 (857)
Q Consensus 561 ~~ 562 (857)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 53
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=278.37 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC---------
Q 003016 378 NEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH--------- 447 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~--------- 447 (857)
..+..+.+++.+++.... ..+++.+|.+|++.|++++|+++|++|.+ .|+.||.+|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 455667778888876654 34688999999999999999999999999 8999999999999999987665
Q ss_pred HHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh
Q 003016 448 IDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526 (857)
Q Consensus 448 ~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~ 526 (857)
++.|.++|++|.. |+.||..|||+||.+|++.|++++|.++|++|...| +.||..||+++|.+|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-------------~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-------------IQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCccceehHHHHHHHH
Confidence 7889999999988 899999999999999999999999999999999999 99999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003016 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 597 (857)
Q Consensus 527 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~ 597 (857)
.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-21 Score=216.85 Aligned_cols=373 Identities=13% Similarity=0.070 Sum_probs=292.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHH
Confidence 345667788888888888887642 236677778888888889999998888887763 34577888889999999
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++++|...|+++.... +.+..+|..+..++.+.|++++|...|.++.+. .|+....
T Consensus 80 ~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---- 137 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCV---- 137 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHH----
T ss_pred CCCHHHHHHHHHHHHHcC----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH----
Confidence 999999999998887642 335667888888888999999999999888875 4555443
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
+..+...|...|++++|..+|+++.+... .+..+|+.+..+|.+.|++++|...|+++... .+.+...+.
T Consensus 138 -------~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 207 (388)
T 1w3b_A 138 -------RSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYI 207 (388)
T ss_dssp -------HHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred -------HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 46777888888999999999988877643 34667888888899999999999999888772 223456778
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHh
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEY 515 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~ 515 (857)
.+...+...|++++|...|.......+.+..+|..+...|.+.|++++|.+.|+++.... | +..
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~ 272 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---------------PHFPD 272 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---------------SSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------CCCHH
Confidence 888888889999999998888877445568888889999999999999999999888754 5 456
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 595 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~ 595 (857)
+|..+..++...|++++|...|+++.+. .+.+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7888888888889999999999888875 24567788888888889999999999998887642 335778888888888
Q ss_pred HcCCHHHHHHHHHHhhhCCCccCH-HHHHHHH
Q 003016 596 VQSNYEKAVALINAMAYAPFHITE-RQWTELF 626 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll 626 (857)
+.|++++|+..++++.. ..|+. ..|..+-
T Consensus 351 ~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp TTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 88999999999988764 34543 3444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-20 Score=209.65 Aligned_cols=379 Identities=13% Similarity=0.053 Sum_probs=317.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
..+.+.|.+++|...+..+.+.. +.+...+..+...+...|+++.|...++..++. .+.+..+|+.+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCC
Confidence 34567899999999999988764 334556666777788899999999999998874 3348899999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
++++|...|+++.+. .| +..+|..+..++.+.|++++|.+.|+++.... +.+...+..+.
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~ 142 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------PDLYCVRSDLG 142 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------TTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCcHHHHHHHH
Confidence 999999999999873 35 46789999999999999999999999998743 33456677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
..+...|++++|.++|+++.+. .|+.... |+.+...|.+.|++++|...|+++.+.+. .+...|..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 208 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIET--QPNFAVA-----------WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYIN 208 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 8899999999999999999876 3543322 48899999999999999999999988764 35677999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+...+...|++++|+..|.+.... .+.+..++..+...|.+.|++++|...|+.+.+..+.+..+|+.+...|.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998772 233577899999999999999999999999988555678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
+++|.+.|+++.+.. ..+..+|..+...+...|++++|...++++.+. .+.+..++..+...|.+
T Consensus 287 ~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC--------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 999999999998864 246788999999999999999999999999864 23357789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 003016 562 AGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQS 598 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g 598 (857)
.|++++|...|+.+.+. .| +...|..+-..+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999874 44 4566666655554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-18 Score=194.99 Aligned_cols=425 Identities=9% Similarity=-0.043 Sum_probs=318.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+...-..+.+.|.+++|+..|.++.+.. |+..++..+..++...|+++.|...++.+++.. +.+..+|..+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~ 80 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHH
Confidence 344555677888999999999999999876 799999999999999999999999999998753 33778999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----------------------
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---------------------- 293 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---------------------- 293 (857)
.+|.+.|++++|...|+++.... +++......++..+........+.+.+..+...
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999999998742 234444555555444433333333333211111
Q ss_pred CChhhhhhhhhcCCCCC-------CCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHH
Q 003016 294 PSKRIKNMHRKNWDPVL-------EPDLVVYNAVLNACVP---SHQWKGVFWVFKQLRK-----SGLKPSAATYGLAMES 358 (857)
Q Consensus 294 g~~~l~~m~~k~f~~~~-------~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ll~~ 358 (857)
+....+..+...+.... +.+...+......+.. .|++++|..+|+++.+ ..-.|+..... -
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~ 234 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK----E 234 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----H
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----h
Confidence 00001111111111111 1224444444444444 8999999999999988 42233321000 0
Q ss_pred HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 003016 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL 438 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 438 (857)
....++..+...|...|++++|...|+++.+.+.. ..+|..+..+|...|++++|...|+++.. ..+.+..++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 310 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHH
Confidence 00123578899999999999999999999877644 77899999999999999999999999987 234456788889
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHh
Q 003016 439 IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTY 517 (857)
Q Consensus 439 l~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~ 517 (857)
...|...|++++|...|+......+.+...|..+...|.+.|++++|..+|+++.... | +..+|
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~ 375 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---------------PEAPEVP 375 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---------------TTCSHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---------------ccCHHHH
Confidence 9999999999999999999988655678899999999999999999999999998754 4 45678
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 518 SSMLEASATAHQWEYFEYVYKGMALSGC-QLD----QTKHAWLLVEASR---AGKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~l~~~m~~~g~-~pd----~~t~~~Ll~~~~~---~G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
..+...+...|++++|...++++.+..- .++ ...+..+...|.. .|++++|...|+.+.+.. +.+..+|..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 454 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 8888999999999999999999876421 111 3378888888999 999999999999988753 335778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+...+.+.|++++|...+++...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-18 Score=190.18 Aligned_cols=325 Identities=12% Similarity=0.012 Sum_probs=262.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+..++..+...|.+.|++++|+.+|+.+.+. .+.+..+|..+..+|...|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 36778888888888999999999999888773 33468888888888999999999999998887753
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA----ATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
+.+..+|..+..+|.+.|++++|...|+.+.+. .|+. ..+..+...+....+..+...|.+.|++++|.
T Consensus 91 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 91 -----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 446778888888888899999999999888865 4544 33433333333333455667799999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
..|+++.+... .+..+|..+..+|.+.|++++|+..|+++... .+.+..++..+...|...|++++|...|+.+...
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 164 AFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999987653 36778999999999999999999999999872 3456788999999999999999999999999875
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----HhHhhhhHHHH
Q 003016 462 CEPNIGTVNAM------------LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-----EYTYSSMLEAS 524 (857)
Q Consensus 462 ~~p~~~~~~~l------------i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-----~~t~~~ll~a~ 524 (857)
.+.+...+..+ ...|.+.|++++|...|+++.... |+ ...|..+...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---------------PSIAEYTVRSKERICHCF 305 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------CSSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CcchHHHHHHHHHHHHHH
Confidence 55566666665 889999999999999999998854 55 34788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003016 525 ATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEML 591 (857)
Q Consensus 525 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li 591 (857)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+.+.+. .|+ ...+..+-
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99999999999999988742 335788999999999999999999999999874 453 45555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-17 Score=187.03 Aligned_cols=313 Identities=13% Similarity=0.119 Sum_probs=256.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|+++.|..+|+.+++. .+.+..+|..+..+|.+.|++++|...|+++.+. -+.+..+|
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 97 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 45567888889999999999999999998864 2347889999999999999999999999999874 23458899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH---HHHHHHHH------------HHHhcCChHH
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL---VVYNAVLN------------ACVPSHQWKG 332 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~---~t~~~li~------------~~~~~g~~~~ 332 (857)
..+..+|.+.|++++|...|+++.... +.+. .+|..+.. .+...|++++
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN----------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC----------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999998753 2334 56666544 4889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCH
Q 003016 333 VFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 412 (857)
Q Consensus 333 A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~ 412 (857)
|..+|+.+.+.. +.+..++ ..+..+|.+.|++++|..+|+++.+.+. .+..+|..+..+|...|++
T Consensus 162 A~~~~~~~~~~~-~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELR------------ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHH------------HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC-CCChHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 999999998763 2244444 8899999999999999999999987642 3577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-HHHHHHH------------HHHHHcCCCHHHHHHHHHHHhhCCCCC----HHHHHHHHHH
Q 003016 413 QDAMLVVEKIKSLRHSKPL-EITFTGL------------IISSMDGGHIDDCISIFQHMKDHCEPN----IGTVNAMLKV 475 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd-~~t~~~l------------l~a~~~~g~~~~A~~if~~m~~~~~p~----~~~~~~li~~ 475 (857)
++|+..|+++... .|+ ...+..+ ...|.+.|++++|...|+.+.+..+.+ ..+|..+..+
T Consensus 228 ~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999873 233 3334333 788999999999999999998732223 4588999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~ 553 (857)
|.+.|++++|+..++++.... | +..+|..+..+|...|++++|...++++.+ +.|+ ...+.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~---------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 367 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME---------------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIRE 367 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHH
Confidence 999999999999999998754 5 678999999999999999999999999987 5565 44444
Q ss_pred HHH
Q 003016 554 WLL 556 (857)
Q Consensus 554 ~Ll 556 (857)
.+-
T Consensus 368 ~l~ 370 (450)
T 2y4t_A 368 GLE 370 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-17 Score=185.53 Aligned_cols=426 Identities=9% Similarity=0.019 Sum_probs=319.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+......+...|+++.|...|+.+++. .|+..+|..+..+|.+.|++++|...|+++.+. -+.+..+|..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHH
Confidence 345667778888999999999999999863 268899999999999999999999999998874 2345788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG----- 344 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 344 (857)
+..+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNG----------------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS----------------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC----------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998764 3444445555555444333333333332221111
Q ss_pred --------------CCCCHHHHHHHHHHHH-------------HhHHHHHHHHHH---HcCCHHHHHHHHHHHhh-----
Q 003016 345 --------------LKPSAATYGLAMESYR-------------RCLLKVLVRAFW---EEGKINEAVAAVRNMEQ----- 389 (857)
Q Consensus 345 --------------~~pd~~t~~~ll~~~~-------------~~~~~~Li~~y~---k~g~~~~A~~lf~~m~~----- 389 (857)
..|+.......+..+. ...+..+...+. +.|++++|..+|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 1111111100000000 001233333344 38999999999999887
Q ss_pred cCC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 390 RGV--------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 390 ~~~--------~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
..- ..+..+|..+...+...|++++|...|+++... . |+..++..+...|...|++++|...|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 311 223567888999999999999999999999873 2 33778899999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHH
Q 003016 462 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGM 540 (857)
Q Consensus 462 ~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m 540 (857)
.+.+..+|..+...|...|++++|...|++..... | +..++..+...+...|++++|...++.+
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---------------PENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66778899999999999999999999999998855 4 4568888889999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHhhh
Q 003016 541 ALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPH----PLFFTEMLIQAIV---QSNYEKAVALINAMAY 612 (857)
Q Consensus 541 ~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~M~~ 612 (857)
.+.. +.+..++..+...|...|++++|...|+.+.+. .-.++ ...|..+...+.. .|++++|...+++...
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 8753 335678888899999999999999999988764 11222 4488889999999 9999999999999765
Q ss_pred CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 613 APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 613 ~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
.. ..+..++..+...+...|+.+.|...++...+.+ |+.+.....
T Consensus 444 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~ 488 (514)
T 2gw1_A 444 LD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQA 488 (514)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHH
Confidence 32 2245678888889999999999999999998764 444444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-16 Score=180.73 Aligned_cols=419 Identities=10% Similarity=-0.015 Sum_probs=306.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+..+-..+.+.|.+++|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+++.. +.+..++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHH
Confidence 445666677888999999999999999875 4577889999999999999999999999998753 33788999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---------hhhhhhhh---
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS---------KRIKNMHR--- 303 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~~l~~m~~--- 303 (857)
..|.+.|++++|...|+.+.. .|+ ..+..+..+...+...+|...++++..... ...+..|.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHhc----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999975433 233 233345566666777889999998866410 00000010
Q ss_pred ------hcCCCCC--CCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhHHH
Q 003016 304 ------KNWDPVL--EPDLV-VYNAVLNACVP--------SHQWKGVFWVFKQLRKSGLKPSA-ATYGLAMESYRRCLLK 365 (857)
Q Consensus 304 ------k~f~~~~--~pd~~-t~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~ 365 (857)
..+.... .+... .+..+...+.. .|++++|..+++.+.+.. |+. ..+... ..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~-----~~~~~ 247 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENA-----ALALC 247 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH-----HHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHH-----HHHHH
Confidence 0111111 11111 22222222222 247899999999998753 432 211111 11236
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC
Q 003016 366 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445 (857)
Q Consensus 366 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 445 (857)
.+...|...|++++|...|++..+.+ |+..+|..+...|...|++++|...|.+.... .+.+..++..+...+...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhc
Confidence 77788999999999999999998865 44778889999999999999999999998873 234567889999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHH
Q 003016 446 GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEAS 524 (857)
Q Consensus 446 g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~ 524 (857)
|++++|...|+...+..+.+...|..+...|.+.|++++|.+.|+++.... | +...|..+...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---------------PTLPEVPTFFAEIL 388 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHH
Confidence 999999999999988555567889999999999999999999999998865 4 456888888999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 525 ATAHQWEYFEYVYKGMALSG-----CQLDQTKHAWLLVEASRA----------GKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 525 ~~~g~~~~a~~l~~~m~~~g-----~~pd~~t~~~Ll~~~~~~----------G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
...|++++|...|+++.+.. .......+..+...|.+. |++++|..+|+...+.. +.+...|..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999999987642 111122344445567777 99999999999988752 235788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+...+...|++++|...|++...
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=176.86 Aligned_cols=416 Identities=13% Similarity=0.074 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+.+.|+++.|...|+.+++.. +.+..+|..+...|.+.|++++|...|+++.+. -+.+..+|..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHH
Confidence 3466777888999999999999999998753 347899999999999999999999999999874 2346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS------ 343 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------ 343 (857)
+..++...|++++|...|+.+.. .|+.. +..+..+...+....|...++.+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLSL------------------NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc------------------CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999974422 22221 22234455555667788888887543
Q ss_pred CCCCCHHHHHHHHHHHH------------------HhHHHHHHHHHHH--------cCCHHHHHHHHHHHhhcCCCCC--
Q 003016 344 GLKPSAATYGLAMESYR------------------RCLLKVLVRAFWE--------EGKINEAVAAVRNMEQRGVVGT-- 395 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~------------------~~~~~~Li~~y~k--------~g~~~~A~~lf~~m~~~~~~~d-- 395 (857)
...|+.......+..+. ...+..+...|.. .|++++|..+|+++.+......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 23344443322221110 0012333333322 2588999999999987653311
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 396 ----ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 396 ----~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
..+|..+...+...|++++|...|.+.... .|+..++..+...|...|++++|...|+.+.+..+.+..+|..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Confidence 235777778889999999999999999873 4567788889999999999999999999998866678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~ 550 (857)
+...|...|++++|.+.|++..... | +..+|..+...+...|++++|...++++.+.. +.+..
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN---------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999998865 4 45688889999999999999999999998753 33466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhhCCC
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAG-----EIPHPLFFTEMLIQAIVQ----------SNYEKAVALINAMAYAPF 615 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-----i~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~M~~~~~ 615 (857)
.+..+...|...|++++|...|+.+.+.. .......+..+...+.+. |++++|+..+++.....
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 88888999999999999999999887641 112233344555677777 99999999999976531
Q ss_pred ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 616 HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 616 ~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+..+|..+-..+...|+.+.|...++...+....
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 234578888999999999999999999999876543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-14 Score=151.37 Aligned_cols=324 Identities=10% Similarity=-0.010 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..+..+...|.+.|++++|...|+++... .+.+..+|..+...+...|++++|...|+++....
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 34445555555555555555555555542 12235555555555555566666666655555431
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP---SAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+.+...|..+...+...|++++|...|+.+.+. .| +.. .+..+........+..+...|...|++++|..+|
T Consensus 68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 224455555555555566666666666555543 23 111 1111100001111244577889999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP 464 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p 464 (857)
+++.+... .+..+|..+..+|...|++++|...|++... ..+.+..++..+...|...|++++|...|+...+..+.
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 144 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 99987653 3567899999999999999999999999987 33456778899999999999999999999999875445
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-----HhhhhHHHHHhc
Q 003016 465 NIGTVNAM------------LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-----TYSSMLEASATA 527 (857)
Q Consensus 465 ~~~~~~~l------------i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-----t~~~ll~a~~~~ 527 (857)
+...+..+ ...+.+.|++++|...|+++.... |+.. .+..+...+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---------------PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------CSSHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CCchHHHHHHHHHHHHHHHHc
Confidence 55544432 556788888888888888887754 4432 234455677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQ 593 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~ 593 (857)
|++++|...+++..+.. +.+..++..+...|...|++++|...|+...+. .|+ ...+..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 88888888888777642 225667777777777777888887777777664 233 4444444333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-13 Score=149.87 Aligned_cols=305 Identities=14% Similarity=0.088 Sum_probs=250.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~ 233 (857)
+++.+..+-..+...|.+++|+..|....+.. +.+..++..+...+...|+++.|...++.+++.. +.+..+|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 34566777788889999999999999998865 3467789999999999999999999999998753 236789999
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHcCCChh
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYP----DIAAYHSV------------AVTLGQVGLLKELVKLIERMRQKPSKR 297 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~p----d~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~ 297 (857)
+...|.+.|++++|...|++.... .| +...|..+ ...+...|++++|..+|+++....
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 150 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--- 150 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 999999999999999999999873 45 44455554 578899999999999999998753
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH
Q 003016 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI 377 (857)
Q Consensus 298 l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~ 377 (857)
+.+...+..+...+...|++++|...++.+.+.. +.+..++ ..+...|...|++
T Consensus 151 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~------------~~la~~~~~~~~~ 204 (359)
T 3ieg_A 151 -------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF------------YKISTLYYQLGDH 204 (359)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH------------HHHHHHHHHHTCH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH------------HHHHHHHHHcCCH
Confidence 4578889999999999999999999999998763 2234443 8899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHH
Q 003016 378 NEAVAAVRNMEQRGVVGTASVYY------------ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSM 443 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d~~t~~------------~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~ 443 (857)
++|...|+...+.... +...|. .+...+.+.|++++|...|++........+.. ..+..+...+.
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999998876533 233333 23667899999999999999998733221211 23556778899
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|...|+...+..+.+..+|..+...|.+.|++++|.+.|++..+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999988656689999999999999999999999999998844
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-13 Score=153.63 Aligned_cols=413 Identities=9% Similarity=0.029 Sum_probs=299.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-+...|..++. +...|+++.|+.+|+.+++. .+.+...|..++..+.+.|+++.|..+|++.... .|++..|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHH
Confidence 36678888888 47789999999999999874 3347889999999999999999999999999873 4888888
Q ss_pred HHHHHH-HHhcCCHHHHHH----HHHHHHcC-CChhhhhhhhhcCCCCCC-CCHHHHHHHHHHHHh---------cCChH
Q 003016 268 HSVAVT-LGQVGLLKELVK----LIERMRQK-PSKRIKNMHRKNWDPVLE-PDLVVYNAVLNACVP---------SHQWK 331 (857)
Q Consensus 268 ~~li~~-~~~~g~~~~A~~----l~~~m~~~-g~~~l~~m~~k~f~~~~~-pd~~t~~~li~~~~~---------~g~~~ 331 (857)
...+.- ....|+.++|.+ +|+..... | .. ++...|...+....+ .|+++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g---------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG---------------MEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT---------------TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC---------------CCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 888753 345677766655 77766543 3 33 457788887776554 68899
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH---HHHhHHHHHHHHHHHcCCHHHHHHHHHHHh------hcC---CCCC-
Q 003016 332 GVFWVFKQLRKSGLKPSA---ATYGLAMES---YRRCLLKVLVRAFWEEGKINEAVAAVRNME------QRG---VVGT- 395 (857)
Q Consensus 332 ~A~~l~~~m~~~g~~pd~---~t~~~ll~~---~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~------~~~---~~~d- 395 (857)
.|..+|++.++. |+. ..|...... ....+...++. .+.+++..|..++.++. ++. +.|+
T Consensus 148 ~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 148 AVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 999999999883 332 222111000 00000011111 13456778888777632 221 2333
Q ss_pred -------HHHHHHHHHHHHHC----CCH----HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc-------CCCHH----
Q 003016 396 -------ASVYYELACCLCNN----GRW----QDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-------GGHID---- 449 (857)
Q Consensus 396 -------~~t~~~lI~~~~~~----g~~----~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-------~g~~~---- 449 (857)
...|...+.....+ ++. .+|..+|++.... .+-+...|......+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 24676666544332 222 4778889888772 23355667777776664 79987
Q ss_pred ---HHHHHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhhhHHH
Q 003016 450 ---DCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSSMLEA 523 (857)
Q Consensus 450 ---~A~~if~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ll~a 523 (857)
+|..+|+...+. .+.+...|..++..+.+.|++++|..+|+++.... |+. ..|......
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---------------DIDPTLVYIQYMKF 365 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---------------SSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---------------ccCchHHHHHHHHH
Confidence 899999999874 55578999999999999999999999999999844 653 478888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE-ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~-~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
+.+.|+++.|..+|++..+. .|+ ...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.+
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHh
Confidence 88999999999999999874 333 3333332222 346899999999999887752 235789999999999999999
Q ss_pred HHHHHHHHhhhC-CCccC--HHHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 602 KAVALINAMAYA-PFHIT--ERQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 602 ~A~~l~~~M~~~-~~~p~--~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
+|..+|++.... +..|+ ...|...+......|+.+.+..+.+.+.+.
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998765 34443 568888888888899999999998888754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-17 Score=194.01 Aligned_cols=164 Identities=12% Similarity=0.143 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLR---KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.--..|||++|++||+.|++++|.++|.+|. ..|+.||.+|| |+||++||+.|++++|.++|++|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY------------NtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY------------NAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH------------HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH------------HHHHHHHHhCCCHHHHHHHHHHH
Confidence 3346799999999999999999999998876 45899999998 99999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC-
Q 003016 388 EQRGVVGTASVYYELACCLCNNGR-WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN- 465 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~- 465 (857)
.+.|+.||..|||+||.++|+.|+ .++|.++|++|.. .|+.||.+||++++.++.+.+-++.+.+ +..++.|+
T Consensus 192 ~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrk----v~P~f~p~~ 266 (1134)
T 3spa_A 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHK----VKPTFSLPP 266 (1134)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGG----GCCCCCCCC
T ss_pred HHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHH----hCcccCCCC
Confidence 999999999999999999999998 4789999999999 8999999999999987766544443333 33333333
Q ss_pred -----HHHHHHHHHHHHhcC---------CHHHHHHHHHH
Q 003016 466 -----IGTVNAMLKVYSRND---------MFSKAKELFEE 491 (857)
Q Consensus 466 -----~~~~~~li~~~~~~g---------~~~~A~~lf~~ 491 (857)
+.+...|.+.|.+.+ ..++-.++|++
T Consensus 267 ~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred CCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 556677888888766 24566666664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=192.87 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc---CCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQ---KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
..|||+||.+|++.|++++|.++|.+|.. .| +.||++|||+||.+||+.|++++|.++|++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------KLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56888888888888888888888877764 35 8999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003016 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK-INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419 (857)
Q Consensus 341 ~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~-~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~ 419 (857)
.+.|+.||.+|| |+||+++|+.|+ .++|.++|++|.++|+.||..||++++.++.+.+ +++..
T Consensus 192 ~~~G~~PDvvTY------------ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~V 255 (1134)
T 3spa_A 192 KDAGLTPDLLSY------------AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAV 255 (1134)
T ss_dssp HHTTCCCCHHHH------------HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHH
T ss_pred HHcCCCCcHHHH------------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHH
Confidence 999999999999 999999999998 5789999999999999999999999998776643 44444
Q ss_pred HHHHhcCCCCCc------HHHHHHHHHHHHcCC
Q 003016 420 EKIKSLRHSKPL------EITFTGLIISSMDGG 446 (857)
Q Consensus 420 ~~m~~~~g~~pd------~~t~~~ll~a~~~~g 446 (857)
+++. .+..|+ ..|...|.+.|++.+
T Consensus 256 rkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 HKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence 4452 455554 556677777787655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-15 Score=160.51 Aligned_cols=311 Identities=10% Similarity=0.026 Sum_probs=220.2
Q ss_pred hcCCHHHHHH-HHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 003016 202 DKGSWRQAMS-VLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 202 ~~g~~~~A~~-l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~ 280 (857)
..|+++.|.. .+...+.........+...+..+...|.+.|++++|...|+++.+. .+.+..+|..+..+|...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCH
Confidence 3467788887 7776554433222223456778888888999999999999998873 234678888888899999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM---E 357 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~ 357 (857)
++|...|+++.... +.+..+|..+...+...|++++|...++.+.+.. |+.......+ .
T Consensus 115 ~~A~~~~~~al~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 115 LLAISALRRCLELK----------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------
T ss_pred HHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHh
Confidence 99999999887753 4477888888888999999999999999888754 3222110000 0
Q ss_pred -HH-HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH
Q 003016 358 -SY-RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434 (857)
Q Consensus 358 -~~-~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 434 (857)
.. ....+. .+..+...|++++|...|+++.+.+... +..+|..+...|.+.|++++|+..|++.... .+.+..+
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 177 GGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhhcccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 00 000001 2333448899999999999998765432 5788999999999999999999999998873 2345678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE 514 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~ 514 (857)
+..+...|...|++++|...|+.+.+..+.+..+|..+...|.+.|++++|...|+++.......... .........
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP---RGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc---cccccchhh
Confidence 99999999999999999999999988556678999999999999999999999999988754000000 000000014
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+|..+..+|...|+.++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 677777777888888777777665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-13 Score=148.35 Aligned_cols=294 Identities=9% Similarity=-0.007 Sum_probs=235.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
..+...+..+...+...|+++.|..+++.+++..+ .+..++..++..+.+.|++++|..+|+++.+. .+.+...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP----FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHH
Confidence 45566777888888888999999999999987533 24556777888889999999999999999874 2346788
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 267 YHSVAVTLGQVG-LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 267 ~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
|..+...+...| ++++|...|++..... +.+...|..+...+...|++++|...++.+.+...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE----------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC----------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC----------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 999999999999 9999999999998753 44677899999999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
. +...+ ..+...|...|++++|...|++..+... .+..+|..+...|...|++++|...|++....
T Consensus 157 ~-~~~~~------------~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 157 G-CHLPM------------LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp T-CSHHH------------HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-cHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 22333 5688899999999999999999887653 35678999999999999999999999988762
Q ss_pred CC-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 426 RH-------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSS 498 (857)
Q Consensus 426 ~g-------~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~ 498 (857)
.. ...+..++..+...|...|++++|...|+...+..+.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT---
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc---
Confidence 10 13345688899999999999999999999998755567889999999999999999999999998764
Q ss_pred CccccCCCCCCCCC-CHhHhhhhHHHHH-hcCCHH
Q 003016 499 GYTFLSGDGAPLKP-DEYTYSSMLEASA-TAHQWE 531 (857)
Q Consensus 499 ~~~~~~~~~~~~~p-d~~t~~~ll~a~~-~~g~~~ 531 (857)
.| +...+..+..++. ..|+.+
T Consensus 300 ------------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 300 ------------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ------------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred ------------CCCchHHHHHHHHHHHHHhCchh
Confidence 36 4556666666663 345443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-11 Score=135.64 Aligned_cols=364 Identities=10% Similarity=-0.019 Sum_probs=283.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCChhH
Q 003016 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGD----KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRPHE 246 (857)
Q Consensus 175 ~~l~~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~~~ 246 (857)
+..+....+.| +...+..+-..|.. .++++.|...|....+. .+...+..|-..|.. .+++++
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34444444444 56666666666766 78999999999888764 266788888888888 889999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
|...|++..+. -+...+..|-..|.. .+++++|...|++....| +...+..+-.
T Consensus 98 A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~Lg~ 155 (490)
T 2xm6_A 98 AVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------------------RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------CHHHHHHHHH
Confidence 99999998874 477888888888887 789999999999887654 4566777777
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCC
Q 003016 323 ACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 323 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~ 394 (857)
.|.. .+++++|.+.|+...+.| +...+ ..|..+|.. .++.++|...|++..+.+
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~------------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 217 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC------------NQLGYMYSRGLGVERNDAISAQWYRKSATSG--- 217 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH------------HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---
Confidence 7776 788999999999988875 44444 677778887 899999999999888765
Q ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCH
Q 003016 395 TASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 395 d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~ 466 (857)
+...+..+...|.. .+++++|...|++... .+ +...+..+-..|.. .++.++|...|+...+. -+.
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 45567777777776 7889999999998876 32 34555666666666 78999999999988763 356
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC---CHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRN-----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH---QWEYFEYVYK 538 (857)
Q Consensus 467 ~~~~~li~~~~~~-----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g---~~~~a~~l~~ 538 (857)
..+..+-..|... ++.++|...|++..+.+ +...+..+-..|...| +.++|.+.|+
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----------------DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 7778888888887 89999999999988765 3345666666666655 7889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q 003016 539 GMALSGCQLDQTKHAWLLVEASR----AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAM 610 (857)
Q Consensus 539 ~m~~~g~~pd~~t~~~Ll~~~~~----~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M 610 (857)
+..+.| +...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..|.. .+++++|...|++.
T Consensus 356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 988864 56777788888887 789999999999988875 56777888888887 79999999999997
Q ss_pred hhCCC
Q 003016 611 AYAPF 615 (857)
Q Consensus 611 ~~~~~ 615 (857)
...+.
T Consensus 430 ~~~~~ 434 (490)
T 2xm6_A 430 STNDM 434 (490)
T ss_dssp HHHHC
T ss_pred HHCCC
Confidence 76553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-11 Score=143.86 Aligned_cols=415 Identities=9% Similarity=-0.002 Sum_probs=296.9
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 231 (857)
..+...|..++. +.+.|.+++|..+|+.+.+.- +-+...|..++..+.+.|+++.|..+|+.++.. .|++..|
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-----~p~~~lw 82 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-----VLHIDLW 82 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-----CCCHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCChHHH
Confidence 346677777777 467899999999999998763 446668999999999999999999999999763 2577788
Q ss_pred HHHHHH-HHHcCChhHHHH----HHHHhHHcCCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHcCCCh
Q 003016 232 TKLLAI-LGKAGRPHEALR----IFNLMLEDCNLYP-DIAAYHSVAVTLGQ---------VGLLKELVKLIERMRQKPSK 296 (857)
Q Consensus 232 n~Li~~-y~k~g~~~~A~~----vf~~m~~~~gi~p-d~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~ 296 (857)
..++.. +...|+++.|++ +|+......|..| +...|...+....+ .|+++.|..+|++..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-- 160 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-- 160 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch--
Confidence 887753 345688887765 7777766556554 56788888876654 688999999999998743
Q ss_pred hhhhhhhhcCCCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCCHH-HHH
Q 003016 297 RIKNMHRKNWDPVLEPDLVVYNAVLNAC-------------VPSHQWKGVFWVFKQLR------KSG---LKPSAA-TYG 353 (857)
Q Consensus 297 ~l~~m~~k~f~~~~~pd~~t~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd~~-t~~ 353 (857)
..+....|....... .+.+++..|..++.++. +.. +.|+.. .+.
T Consensus 161 -------------~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 161 -------------MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred -------------hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222233443322211 13456777777777632 221 244421 000
Q ss_pred HHHHHHHHhHHHHHHHHHHHc----CCH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-------CCCHH-----
Q 003016 354 LAMESYRRCLLKVLVRAFWEE----GKI----NEAVAAVRNMEQRGVVGTASVYYELACCLCN-------NGRWQ----- 413 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~----g~~----~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~-------~g~~~----- 413 (857)
.. ...|...+...... ++. ..|..+|++..... .-+...|..++..+.+ .|+++
T Consensus 228 ~~-----~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 228 QQ-----VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp HH-----HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HH-----HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 00 01234444433322 222 47778888887653 2356778888888876 79987
Q ss_pred --HHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 003016 414 --DAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRNDMFSKAKELF 489 (857)
Q Consensus 414 --~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~lf 489 (857)
+|..+|++... ...| +...+..+...+.+.|++++|..+|+.+.+..+.+. ..|..++..+.+.|++++|.++|
T Consensus 302 ~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999865 2345 477889999999999999999999999988433343 58999999999999999999999
Q ss_pred HHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003016 490 EETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLE-ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 567 (857)
Q Consensus 490 ~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~-a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~ 567 (857)
++..... |+ ...|..... .+...|+.+.|..+|+..++.. +-+...+..++..+.+.|+.++
T Consensus 380 ~~Al~~~---------------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 380 KKAREDA---------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHTCT---------------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcc---------------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 9998744 32 222222222 2345899999999999988742 2357788899999999999999
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 568 LEHAFDSLLEAG-EIP--HPLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 568 A~~~~~~m~~~g-i~p--~~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
|..+|+.....+ ..| ....|...+......|+.+.+..+.+++..
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998863 334 255888888888889999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=168.09 Aligned_cols=349 Identities=13% Similarity=0.120 Sum_probs=127.7
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK 281 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~ 281 (857)
+.|++++|.+.++.+ ++..+|+.|..++.+.|++++|.+.|.+. +|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHH
Confidence 556677777776655 12347777777777777777777777442 45557777777777777777
Q ss_pred HHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 282 ELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRR 361 (857)
Q Consensus 282 ~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 361 (857)
+|...++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..++
T Consensus 79 eAi~yl~~ark~-----------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~--------- 125 (449)
T 1b89_A 79 ELVKYLQMARKK-----------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHI--------- 125 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-------CC--------------
T ss_pred HHHHHHHHHHHh-----------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHH---------
Confidence 777755554442 3445666677777777777777666663 2555444
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
+.+.+.|...|++++|...|..+. .|..++.++.+.|++++|++.+.++ .+..+|..++.+
T Consensus 126 ---~~IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~a 186 (449)
T 1b89_A 126 ---QQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA 186 (449)
T ss_dssp --------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHH
Confidence 667777777777777777777662 2777777777777777777777665 245677777777
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll 521 (857)
|...|+++.|......+. .+......++..|.+.|++++|..+++...... .-....|+-+-
T Consensus 187 Cv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--------------~ah~~~ftel~ 248 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLE--------------RAHMGMFTELA 248 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--------------TCCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--------------HHHHHHHHHHH
Confidence 777777777744443322 333334456677777777777777777665321 11233454444
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 003016 522 EASATA--HQWEYFEYVYKGMALSGCQL------DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLI 592 (857)
Q Consensus 522 ~a~~~~--g~~~~a~~l~~~m~~~g~~p------d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~ 592 (857)
-+|++- +++.+.+++|.. +.+++| +...|.-++..|.+.+.++.|.. .|.++ ...-+...|- .
T Consensus 249 il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~---~ 320 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFK---D 320 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHH---H
T ss_pred HHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHH---H
Confidence 444443 344444444431 112332 23355556666666666665554 34444 2222333333 3
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 593 QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
...+-.+.+--.+.+.-.. +..|. .++.|+.++...-|...+-++ +.+.|..
T Consensus 321 ~~~kv~n~elyYkai~fyl--~~~p~--~l~~ll~~l~~~ld~~r~v~~---~~~~~~l 372 (449)
T 1b89_A 321 IITKVANVELYYRAIQFYL--EFKPL--LLNDLLMVLSPRLDHTRAVNY---FSKVKQL 372 (449)
T ss_dssp HHHHCSSTHHHHHHHHHHH--HHCGG--GHHHHHHHHGGGCCHHHHHHH---HHHTTCT
T ss_pred HHhchhHHHHHHHHHHHHH--hcCHH--HHHHHHHHHHhccCcHHHHHH---HHHcCCc
Confidence 3334444443333333222 22232 467777777666665544444 4555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-14 Score=155.55 Aligned_cols=287 Identities=8% Similarity=-0.023 Sum_probs=210.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
+...|..+...|.+.|++++|...|+++... .+.+..+|..+...|...|++++|...|+++....
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------ 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 4456888888899999999999999998874 23468889999999999999999999999987752
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
+.+..+|..+...|...|++++|...|+++.+.. |+.......+. .....+..+...|.+.|++++|..+|++
T Consensus 130 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 130 ----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-GSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------CCHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-cchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4468889999999999999999999999988753 33221100000 0001125568899999999999999999
Q ss_pred HhhcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 387 MEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 387 m~~~~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
+.+.+.. .+..+|..+...|.+.|++++|+..|++.... .+.+..++..+..+|.+.|++++|...|+.+.+..+.+
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9887543 26788999999999999999999999999873 34467889999999999999999999999998855667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
..+|..+...|.+.|++++|...|+++.......... ........+...|..+..++...|+.+.+..+..
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ--QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC--cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999999999999999988754000000 0000000124567777777777777777666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-13 Score=145.30 Aligned_cols=290 Identities=8% Similarity=-0.042 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...+...|.+++|..+|+.+.+.. +.+...+..++..+...|+++.|..+++.+++..+ .+..+|..+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l 96 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----SNPVSWFAV 96 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TSTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHH
Confidence 3445566677778899999999999998765 34455666778888999999999999999987532 367889999
Q ss_pred HHHHHHcC-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 235 LAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 235 i~~y~k~g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
...|...| ++++|...|++.... .+.+...|..+...+...|++++|...|+++.... +.+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~ 158 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----------------KGC 158 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------TTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------ccc
Confidence 99999999 999999999999873 23457889999999999999999999999998753 335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-- 391 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-- 391 (857)
...+..+...|...|++++|...+++..+.. +.+... +..+...|.+.|++++|...|++..+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFV------------MHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHH------------HHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 6677789999999999999999999998764 223344 3889999999999999999999887542
Q ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 392 ------VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 392 ------~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
...+..+|..+..+|.+.|++++|...|++.... .+.+..++..+...|.+.|++++|...|+...+-.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1334567999999999999999999999999873 23356788899999999999999999999998755667
Q ss_pred HHHHHHHHHHH-HhcCCH
Q 003016 466 IGTVNAMLKVY-SRNDMF 482 (857)
Q Consensus 466 ~~~~~~li~~~-~~~g~~ 482 (857)
...+..+..++ ...|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 88888888887 455554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-14 Score=152.55 Aligned_cols=302 Identities=10% Similarity=-0.008 Sum_probs=167.7
Q ss_pred cCChhHHHH-HHHHhHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 241 AGRPHEALR-IFNLMLEDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 241 ~g~~~~A~~-vf~~m~~~~gi~p--d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
.|+++.|.. .|++......-.| +...|..+...+.+.|++++|...|+++.+.. +.+..+|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~ 101 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----------------PKHMEAW 101 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------TTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHH
Confidence 356666666 6654433111111 23456666677777777777777777776642 3456666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..+..++...|++++|...|+.+.+... .+..++ ..+...|...|++++|...|+++........ .
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 167 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELKP-DNQTAL------------MALAVSFTNESLQRQACEILRDWLRYTPAYA-H 167 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-G
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-H
Confidence 6677777777777777777777666531 133332 5666666677777777777766665432211 0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC--CHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP--NIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p--~~~~~~~li~~ 475 (857)
.+..+ +... ....+. ..+. .+..+...|++++|...|+.+.+..+. +..+|..+...
T Consensus 168 ~~~~~-------~~~~------------~~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 168 LVTPA-------EEGA------------GGAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp GCC-----------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred HHHHH-------HHHh------------hhhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 11100 0000 000000 0000 122222566666666666666652222 46667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|.+.|++++|...|+++.... | +..+|..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 290 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR---------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 290 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 777777777777777766643 3 34566666667777777777777777766532 234556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAG--E--------IPHPLFFTEMLIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~g--i--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 609 (857)
+...|.+.|++++|...|+.+.+.. . .....+|..+..++...|++++|..++++
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777777777777665531 0 01256777777777777777777776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-14 Score=154.50 Aligned_cols=354 Identities=15% Similarity=0.201 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 003016 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (857)
Q Consensus 157 ~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~ 236 (857)
..+.|++ +.|..++|.++++++ +++.+|..+..++.+.|++++|...|... +|...|..++.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~ 69 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHH
Confidence 3344443 456689999999988 33459999999999999999999999542 47779999999
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t 316 (857)
.+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------~pn~~a 124 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----------------------GPNNAH 124 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT----------------------CC----
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------CCcHHH
Confidence 999999999999977777663 4678899999999999999999887763 366779
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
|+.+...|...|.+++|..+|..+. . |..|++++.+.|++++|.+.+.++ .++
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a~---------n------------~~~LA~~L~~Lg~yq~AVea~~KA------~~~ 177 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNVS---------N------------FGRLASTLVHLGEYQAAVDGARKA------NST 177 (449)
T ss_dssp ------------CTTTHHHHHHHTT---------C------------HHHHHHHHHTTTCHHHHHHHHHHH------TCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh---------h------------HHHHHHHHHHhccHHHHHHHHHHc------CCc
Confidence 9999999999999999999999771 2 489999999999999999999998 367
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
.+|..++.+|...|+++.|......+ ...|+. ...++..|.+.|.+++|..+++.....-+.....|+-|--+|
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHI----VVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999999999996544332 234444 457899999999999999999998874456788899888888
Q ss_pred Hhc--CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC------CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003016 477 SRN--DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP------DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548 (857)
Q Consensus 477 ~~~--g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p------d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd 548 (857)
++- ++..+.+++|..-. + +.| +...|.-+.--|.+.+.++.|.. .|.+ ..|+
T Consensus 252 ~ky~p~k~~ehl~~~~~~i--n-------------i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~--h~~~ 311 (449)
T 1b89_A 252 SKFKPQKMREHLELFWSRV--N-------------IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMN--HPTD 311 (449)
T ss_dssp HTTCHHHHHHHHHHHSTTS--C-------------HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHH--STTT
T ss_pred HhcCHHHHHHHHHHHHHHh--c-------------CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHh--CChh
Confidence 875 45666666665321 1 333 45678888888999999998875 3433 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 549 ~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
..-.........+..+.+--.+...-..+ ..| ...+-|+.++...=+..+++.+|+..
T Consensus 312 a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 312 AWKEGQFKDIITKVANVELYYRAIQFYLE--FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 33333444445566665544444433332 223 34666777776666777777777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-10 Score=132.60 Aligned_cols=354 Identities=11% Similarity=-0.047 Sum_probs=291.9
Q ss_pred CHHHHHHHHHHHHH----cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhh
Q 003016 227 SRFVYTKLLAILGK----AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRI 298 (857)
Q Consensus 227 ~~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l 298 (857)
+...+..|-..|.. .++++.|...|.+..+. -+...+..|-..|.. .+++++|...|++....|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 67788888888888 89999999999999884 578889999999998 899999999999997654
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH-
Q 003016 299 KNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE- 373 (857)
Q Consensus 299 ~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k- 373 (857)
+...+..+-..|.. .+++++|...|+...+.| +...+ ..|-.+|..
T Consensus 110 --------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~------------~~Lg~~y~~g 160 (490)
T 2xm6_A 110 --------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ------------QSMGDAYFEG 160 (490)
T ss_dssp --------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH------------HHHHHHHHcC
Confidence 56677778888887 789999999999998876 33433 667778887
Q ss_pred ---cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc--
Q 003016 374 ---EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-- 444 (857)
Q Consensus 374 ---~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-- 444 (857)
.++.++|...|++..+.+ +...+..+...|.. .++.++|+..|++... .+ +...+..+-..|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCC
Confidence 889999999999998875 56678888888888 8999999999999887 33 55677777777775
Q ss_pred --CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh
Q 003016 445 --GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518 (857)
Q Consensus 445 --~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~ 518 (857)
.++.++|..+|+...+. .+...+..+-..|.. .++.++|.+.|++..+.| +...+.
T Consensus 234 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------~~~a~~ 295 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------NSDGQY 295 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----------------CHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Confidence 88999999999998773 456777788888887 899999999999987655 344666
Q ss_pred hhHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003016 519 SMLEASATA-----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG---KCHLLEHAFDSLLEAGEIPHPLFFTEM 590 (857)
Q Consensus 519 ~ll~a~~~~-----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G---~~~~A~~~~~~m~~~gi~p~~~~~~~l 590 (857)
.+-..|... ++.++|...|++..+.| +...+..+-..|...| +.++|.++|+...+.| ++..+..|
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 369 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNL 369 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 677777776 89999999999999875 4566777777777766 7899999999998874 67888888
Q ss_pred HHHHHH----cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh----ccCHHHHHHHHHHHHhCCCC
Q 003016 591 LIQAIV----QSNYEKAVALINAMAYAPFHITERQWTELFESNED----RISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 591 i~~~~~----~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~----~g~~e~~~~l~~~m~~~g~~ 651 (857)
-..|.. .+++++|+.+|++....+ +...+..|-..+.. .++.+.|...++...+.|..
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 888888 799999999999988765 35566666555555 89999999999999988744
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=149.68 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+.+.|++++|..+|+++.... +.+..+|..+...|...|++++|...|+++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----------------PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45568999999999999999999999998753 45788999999999999999999999999988
Q ss_pred cCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC---------CCHHHHHHHHHHHHHCCCH
Q 003016 343 SGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV---------GTASVYYELACCLCNNGRW 412 (857)
Q Consensus 343 ~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---------~d~~t~~~lI~~~~~~g~~ 412 (857)
.. |+ ..++ ..+...|.+.|++++|...|+++.+.+.. ....++..+...|...|++
T Consensus 128 ~~--p~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 128 LQ--PNNLKAL------------MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HC--TTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred cC--CCCHHHH------------HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 64 43 4444 88999999999999999999998764311 0011223345555556666
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 413 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
++|...|+++.......++..++..+...|...|++++|...|+...+..+.+..+|+.+..+|.+.|++++|+..|+++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655522111134444555555555555555555555544433334445555555555555555555555554
Q ss_pred HH
Q 003016 493 TR 494 (857)
Q Consensus 493 ~~ 494 (857)
..
T Consensus 274 l~ 275 (365)
T 4eqf_A 274 LE 275 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=138.72 Aligned_cols=253 Identities=11% Similarity=0.075 Sum_probs=182.1
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~ 315 (857)
....|++..|+..++.... ..|+. .....+..+|...|++++|+..++. . -.|+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~----------------~~~~~~ 66 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S----------------SAPELQ 66 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T----------------SCHHHH
T ss_pred HHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c----------------CChhHH
Confidence 3456888888888776543 22432 3455667888888888888875543 1 356777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d 395 (857)
++..+...+...++.++|.+.++++...+..|+...+ +..+...|.+.|++++|.+.|++ ..+
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~-----------~~~la~~~~~~g~~~~Al~~l~~------~~~ 129 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF-----------LLMAASIYFYDQNPDAALRTLHQ------GDS 129 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHH-----------HHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence 8888888888888888888888888877766765554 36667788888888888888876 345
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH---HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
...+..++..|.+.|++++|...|+++... .|+... ..+.+..+...|++++|..+|+++.+..+.+...|+.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 667888888888888888888888888773 244321 12233444556888888888888877666778888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHH-HHHHHHHHHHcCCCCCH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEY-FEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~-a~~l~~~m~~~g~~pd~ 549 (857)
..+|.+.|++++|.+.|++..... | +..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~---------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKD---------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 888888888888888888877754 5 55677777777777887754 5677777765 34543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=139.79 Aligned_cols=272 Identities=11% Similarity=0.041 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.+..+...+...|++++|..+|+++.+. .+.+..+|..+..++...|++++|...|+++....
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 3455566666777777777777776653 22356666677777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH-HhHHHHH-HH-HHHHcCCHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT-YGLAMESYR-RCLLKVL-VR-AFWEEGKINEAVAAVR 385 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~-~~~~~~L-i~-~y~k~g~~~~A~~lf~ 385 (857)
+.+..+|..+...+...|++++|...++.+.+.. |+... +..+...+. ......+ .. .|...|++++|...++
T Consensus 86 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 86 -PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 3356666667777777777777777777776543 22211 100000000 0000111 22 3778899999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
++.+.... +..+|..+...|...|++++|...|++.... .+.+..++..+...+...|++++|...|+.+.+..+.+
T Consensus 163 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99876533 6778999999999999999999999999873 23457789999999999999999999999998855667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-------------HhHhhhhHHHHHhcCCHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-------------EYTYSSMLEASATAHQWEY 532 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-------------~~t~~~ll~a~~~~g~~~~ 532 (857)
..+|..+...|.+.|++++|.+.|++..... |+ ..+|..+..++...|+.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ---------------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------CccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 8999999999999999999999999988754 43 5677788888888888888
Q ss_pred HHHHHHH
Q 003016 533 FEYVYKG 539 (857)
Q Consensus 533 a~~l~~~ 539 (857)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 8877764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=138.22 Aligned_cols=277 Identities=10% Similarity=-0.005 Sum_probs=206.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+......+...|++++|..+++.+++.. +.+..+|..+...|.+.|++++|...|+++.+. .+.+..+|..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 45556667778888888888888887642 236778888888888888888898888888773 234677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHH-HH-HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV-LN-ACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~l-i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
..|...|++++|...|+++........ ..+.... ...|+......+ .. .+...|++++|...++++.+.... +.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYE-QLGSVNL--QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTT-TC----------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHh--HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CH
Confidence 888888999999998888876531000 0000000 000111111111 22 377889999999999999876422 44
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
..+ ..+...|.+.|++++|...|+++.+... .+..+|..+...|...|++++|...|++.... .+
T Consensus 173 ~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~ 237 (327)
T 3cv0_A 173 QLH------------ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NP 237 (327)
T ss_dssp HHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 444 8899999999999999999999887653 35678999999999999999999999998872 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP------------NIGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
.+..++..+...|...|++++|...|+......+. +..+|..+..+|.+.|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45778899999999999999999999998763222 57889999999999999999999987544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-10 Score=139.57 Aligned_cols=265 Identities=13% Similarity=0.097 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
+..+|..+-.++...|++++|...|.+. -|...| ..++..|.+.|++++|.+.+....+..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say------------~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSY------------MEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 3567888888888888888888887553 233343 668888888888888888887765544
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
++....+.++.+|++.+++++.. -| .. .++...|..+-..|...|++++|..+|... ..|..+
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele-~f---I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL 1227 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELE-EF---IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 1227 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHH-HH---Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH
Confidence 22222334788888888877533 33 12 245556667888888888888888888875 368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~ 552 (857)
..+|++.|++++|.+.+++. -+..+|..+-.+|...|.+..|...... +..++..+
T Consensus 1228 A~tLvkLge~q~AIEaarKA-------------------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA-------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh-------------------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 88888888888888888765 3457888888888888888887765543 44466667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhCCCcc------CHHHHHH
Q 003016 553 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ--SNYEKAVALINAMAYAPFHI------TERQWTE 624 (857)
Q Consensus 553 ~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~--g~~~~A~~l~~~M~~~~~~p------~~~~~~~ 624 (857)
..++..|.+.|.+++|..+++...... .-+...|+.|...+.+. +++.+++++|..-. .+.| +...|..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHH
Confidence 788888888888888888887665433 23455676666666664 66667777666431 2222 2356777
Q ss_pred HHHHhhhccCHHHHHH
Q 003016 625 LFESNEDRISRDKLEK 640 (857)
Q Consensus 625 Ll~a~~~~g~~e~~~~ 640 (857)
+.--+.+.++++.|..
T Consensus 1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccHHHHHH
Confidence 7777777788777663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-09 Score=130.26 Aligned_cols=389 Identities=11% Similarity=0.096 Sum_probs=283.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-++.-....+++|...|.+.+|.++++.++.. ...+..+....|.|+....+. +.....+...+... -+ .
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 45556677889999999999999999998743 222334667788888777777 55555555555543 22 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++..+..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~--------------------~~~A~~VLie---~i~nldrAiE~Aervn------ 1103 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV--------------------NTSAVQVLIE---HIGNLDRAYEFAERCN------ 1103 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC--------------------HHHHHHHHHH---HHhhHHHHHHHHHhcC------
Confidence 4477888899999999999998631 1222333433 6788999999888552
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 427 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g 427 (857)
+..+ |..+..++.+.|++++|...|.+- -|...|..++.+|.+.|++++|.+.|....+ ..
T Consensus 1104 ~p~v------------WsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~ 1164 (1630)
T 1xi4_A 1104 EPAV------------WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA 1164 (1630)
T ss_pred CHHH------------HHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc
Confidence 2333 488999999999999999999664 3555688899999999999999999987665 22
Q ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 003016 428 SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507 (857)
Q Consensus 428 ~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~ 507 (857)
++....+.+..+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~fI---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------- 1221 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEFI---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------- 1221 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHHH---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------
Confidence 44444456999999999988644442 2 267778888999999999999999999874
Q ss_pred CCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003016 508 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587 (857)
Q Consensus 508 ~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~ 587 (857)
..|..+..++.+.|+++.|.+.+++. .+..+|..+-.+|...|.+..|...... +..++..+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 27889999999999999999999875 4668888888899999999999887654 34466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH----HHHH
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITER-QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS----NLSR 662 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~-~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~----~~~~ 662 (857)
..++..|.+.|.+++|+.+++.-. +..+... .|+-|-..+.+ -..+...+.++...+++-.|+..... -+..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaK-y~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHh-CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 899999999999999999998765 4444443 44444444443 45666666666666666655422111 1234
Q ss_pred HHHHHhccCchhhhHh
Q 003016 663 ALHALCRSEKERDLSS 678 (857)
Q Consensus 663 ~l~~~~~~~~~~~~~~ 678 (857)
.+.-++..|..+.|..
T Consensus 1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccHHHHHH
Confidence 4555566677666664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=131.65 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
-.-..|++..|+...+.... ..|+ ....-.+..+|...|+++.|+..++.. -.|+..++..+...+..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 34445666666666654321 1122 123344566777777777777655432 13556666677777777
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
.|+.++|++.++++...+ ..| +...+..+...+.+.|++++|.+.++. ..+...+
T Consensus 78 ~~~~~~A~~~l~~ll~~~---------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~--- 133 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRS---------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECM--- 133 (291)
T ss_dssp STTHHHHHHHHHHHHHSC---------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHH---
T ss_pred CCcHHHHHHHHHHHHhcc---------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHH---
Confidence 777777777777766543 334 344445555666777777777777665 2333333
Q ss_pred HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH
Q 003016 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY---YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~---~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 432 (857)
..+...|.+.|+.++|.+.|+++.+.+ |+.... ...+..+...|++++|..+|+++... .+.+.
T Consensus 134 ---------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~ 200 (291)
T 3mkr_A 134 ---------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTL 200 (291)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCH
T ss_pred ---------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcH
Confidence 566677777777777777777776654 332111 11223333457777777777777762 34556
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK-AKELFEETTRAN 496 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~lf~~M~~~g 496 (857)
..++.+..++.+.|++++|...|++.....+.+..+++.++..+...|+.++ +.++++++.+..
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6677777777777777777777777766445567777777777777777765 567777777644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-10 Score=130.59 Aligned_cols=374 Identities=9% Similarity=-0.022 Sum_probs=208.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----cCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---C-
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL-----KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED---C- 258 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~- 258 (857)
.....|+.+-..+...|+.++|++.|+..++. +.........+|+.+..+|...|++++|...|++..+- .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34457888888888899999999998877543 11122335678999999999999999999888876541 0
Q ss_pred C-CCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHH---HHhcCCh
Q 003016 259 N-LYP-DIAAYHSVAVTLGQV--GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNA---CVPSHQW 330 (857)
Q Consensus 259 g-i~p-d~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~---~~~~g~~ 330 (857)
+ ..+ ...+|+.+..++... +++++|...|++.... .| +...+..+..+ +...++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----------------~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----------------KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----------------CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1 112 355666666566554 4689999999998764 34 44455544444 3456777
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHH----HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003016 331 KGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVR----AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~----~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~ 405 (857)
++|++.+++..+.. |+ ...+ ..+.. .+...|+.++|.+++++....+. .+..+|..+...
T Consensus 192 ~~al~~~~~al~l~--p~~~~~~------------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~ 256 (472)
T 4g1t_A 192 QNAIDPLRQAIRLN--PDNQYLK------------VLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKF 256 (472)
T ss_dssp CCTHHHHHHHHHHC--SSCHHHH------------HHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CcchHHH------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHH
Confidence 88888888887653 33 3333 33333 33345677889999988776653 356678888899
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc-------------------CCCHHHHHHHHHHHhhCCCCCH
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-------------------GGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-------------------~g~~~~A~~if~~m~~~~~p~~ 466 (857)
|...|++++|+..|.+.... .+-+..++..+-..|.. .+..+.|...|+...+..+.+.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh
Confidence 99999999999999988762 22234445544444321 1224455555555544333444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH----hhhhHH-HHHhcCCHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT----YSSMLE-ASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t----~~~ll~-a~~~~g~~~~a~~l~~~m~ 541 (857)
.++..+...|.+.|++++|++.|++..... |+... +..+.. .....|+.++|+..|.+..
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKE---------------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcC---------------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666666777777777777777666533 32211 111111 2234566677777666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCccCHH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA-PFHITER 620 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~-~~~p~~~ 620 (857)
+ +.|+....... .+.+.++++...+.+ +.+..+|..+-..+...|++++|++.|++.++. +..|+..
T Consensus 400 ~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 5 33443221111 122333333333321 224456666666666677777777777765442 3344444
Q ss_pred HH
Q 003016 621 QW 622 (857)
Q Consensus 621 ~~ 622 (857)
+|
T Consensus 468 ~~ 469 (472)
T 4g1t_A 468 SW 469 (472)
T ss_dssp --
T ss_pred hc
Confidence 33
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=119.62 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...|..+...|...|++++|...|++..+. . .+...|..+..+|...|++++|...|++.......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE----------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-----------
Confidence 457888889999999999999999999885 3 78899999999999999999999999998764300
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 308 ~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
..++ ..+|..+...+...|++++|...|+...+.. |+.. .+.+.|++++|...
T Consensus 71 --~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------------------~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 71 --MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------------------ILTKLRNAEKELKK 127 (258)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------------------HHHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------------------HHHHHhHHHHHHHH
Confidence 1122 5789999999999999999999999998853 4433 24456889999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 384 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 384 f~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
++.+..... .+...|..+...|...|++++|+..|++.... .+.+..++..+...|...|++++|...|+...+..+
T Consensus 128 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 999887642 24567888999999999999999999999873 234677899999999999999999999999988556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 67899999999999999999999999998763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-10 Score=116.86 Aligned_cols=228 Identities=7% Similarity=0.013 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
...|..+...+...|++++|...|++.... . .+..+|..+..++...|++++|...+....+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 567888999999999999999999999874 3 67889999999999999999999999998764
Q ss_pred C--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 344 G--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 344 g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
. ..|+.... ..+|..+...|.+.|++++|...|++..+.. |+. ..+.+.|++++|...++.
T Consensus 68 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 68 GREMRADYKVI--------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHTTCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred CcccccchHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHH
Confidence 3 22232111 0124788888999999999999999887754 332 345566788888888888
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 501 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~ 501 (857)
+.. ..+.+...+..+...+...|++++|...|+...+..+.+..+|..+...|.+.|++++|...|++.....
T Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 203 (258)
T 3uq3_A 131 EAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----- 203 (258)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----
Confidence 776 1222344566677777777777777777777776445567777777777777777777777777776644
Q ss_pred ccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 502 FLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 502 ~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
| +..+|..+...+...|++++|...+++..+
T Consensus 204 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 ----------PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 345666666677777777777777766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-09 Score=121.96 Aligned_cols=374 Identities=11% Similarity=-0.007 Sum_probs=244.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLED----C---NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~---gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~ 299 (857)
....||.|-..|...|+.++|++.|++..+- . .-....++|+.+...|...|++++|...+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------ 123 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------ 123 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------
Confidence 4578999999999999999999999876431 0 11234789999999999999999999999887642
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHH---HHHHc
Q 003016 300 NMHRKNWDPVLEPDLVVYNAVLNACVP--SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR---AFWEE 374 (857)
Q Consensus 300 ~m~~k~f~~~~~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~---~y~k~ 374 (857)
+++...........+++.+..++.. .+++++|...|++..+. .|+...+ +..+.. .+...
T Consensus 124 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~-----------~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 124 --CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEF-----------TSGLAIASYRLDNW 188 (472)
T ss_dssp --HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHH-----------HHHHHHHHHHHHHS
T ss_pred --hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHhcCc
Confidence 2222222122345666666555554 45799999999999875 4554433 123332 34556
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHH
Q 003016 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 450 (857)
++.++|...|++..+.+. .+..++..+...+.. .|++++|...+++.... .+.+..++..+...|...|++++
T Consensus 189 ~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp CCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHH
Confidence 788889999988776553 245556666555554 46788999999988762 34456778889999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRN-------------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~ 511 (857)
|...|+...+..+.+..++..+...|... +..++|...|++.....
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------- 330 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--------------- 330 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---------------
Confidence 99999999885556777887777666432 33567888888877754
Q ss_pred C-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003016 512 P-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT--KHAWLLV-EASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587 (857)
Q Consensus 512 p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~-~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~ 587 (857)
| +..++..+...+...|++++|...|++.......+... .+..+.. .+...|+.++|...|+...+. .|+...+
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~ 408 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK 408 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH
Confidence 4 44567788888999999999999999988754333221 2333322 235678999999999988774 4543332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
... ...+..+++..... ...+..+|..|-..+...|+.++|.+.++...+.|-.
T Consensus 409 ~~~---------~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHH---------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 222 23334444443321 1223457777877888889999999999888876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-10 Score=113.63 Aligned_cols=201 Identities=14% Similarity=-0.019 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+|..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|.+.|+++....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 345566666666667777777777666652 12356666666666777777777777776665532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.+...|..+...|...|++++|.++++.+.+.+..|+.... +..+...|.+.|++++|...|++.
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV-----------FENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 335566666666666677777777777666653344443322 355666666677777777777666
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.+... .+..+|..+...|...|++++|...|++... ..+.+...+..+...+...|+.++|.+.++.+.+
T Consensus 168 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 168 LRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55432 2345566666667777777777777766654 2233445566666666666777777766666655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-10 Score=114.73 Aligned_cols=202 Identities=10% Similarity=-0.032 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
...|..+...+...|++++|...|+++.... +.+..+|..+...|...|++++|.+.++++.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----------------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888899999999999999999998753 457888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 344 GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
.. .+...+ ..+...|...|++++|..+|+++...+..| +...|..+...|.+.|++++|...|.+.
T Consensus 101 ~~-~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 101 DS-RNARVL------------NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp CT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Cc-CcHHHH------------HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 234443 788999999999999999999998743444 4567888999999999999999999998
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
... .+.+..++..+...|...|++++|...|+.+.+..+.+...+..+...|.+.|+.++|.++++++....
T Consensus 168 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 168 LRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 873 234577889999999999999999999999988666788899999999999999999999999998865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-10 Score=111.31 Aligned_cols=203 Identities=11% Similarity=-0.006 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+...|++++|.+.|+++... .+.+...|..+...|...|++++|...++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4667888888889999999999999988765 244677888888889999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEE-GKINEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVE 420 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~-g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~ 420 (857)
... .+..++ ..+...|... |++++|...|+++.+.+..|+ ...|..+..+|...|++++|...|.
T Consensus 71 ~~~-~~~~~~------------~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 71 IKP-DSAEIN------------NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HCT-TCHHHH------------HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCC-CChHHH------------HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 233343 7788889999 999999999999887333333 5678888899999999999999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 421 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE-PNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 421 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++... .+.+...+..+...+.+.|++++|...++.+.+..+ .+...+..+...+...|+.++|..+++.+....
T Consensus 138 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 138 RSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88772 233467788888899999999999999999887545 678888888888999999999999999988754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=109.90 Aligned_cols=203 Identities=10% Similarity=-0.082 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
+..+|..+...|...|++++|...|+.+.+. .+.+...|..+...|...|++++|...|+++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------ 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------
Confidence 3445555555666666666666666655542 12335555666666666666666666666655431
Q ss_pred CCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+.+..+|..+...+... |++++|...++.+.+.+..|+.... +..+...|.+.|++++|...|+
T Consensus 73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 73 ----PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA-----------NLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Confidence 23455555555666666 6666666666666553233332221 2555556666666666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
++.+... .+...|..+...|.+.|++++|...|++.... ....+...+..+...+...|+.+.+..+++.+..
T Consensus 138 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 138 RSLAAQP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6554432 13445556666666666666666666665541 1113344455555555666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-08 Score=112.92 Aligned_cols=454 Identities=8% Similarity=-0.019 Sum_probs=299.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC---hhHHHHH
Q 003016 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR---PHEALRI 250 (857)
Q Consensus 174 A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~---~~~A~~v 250 (857)
.+..|++-.... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.+...|...+..-.+.|. ++.+..+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344444444444 468889999999999999999999999999875 44478899999999999999 9999999
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHcC-CChhhhhhhhhcCCCCC-CC-CHHHHHH
Q 003016 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLL--------KELVKLIERMRQK-PSKRIKNMHRKNWDPVL-EP-DLVVYNA 319 (857)
Q Consensus 251 f~~m~~~~gi~pd~~t~~~li~~~~~~g~~--------~~A~~l~~~m~~~-g~~~l~~m~~k~f~~~~-~p-d~~t~~~ 319 (857)
|++........|++..|..-+.-..+.++. +.+.++|+..... | . .+ +...|..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG---------------~~d~~s~~iW~~ 190 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA---------------IFEPKSIQFWNE 190 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT---------------TTCSSCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC---------------cccccchHHHHH
Confidence 999987422248999999888766655543 3345777775542 3 3 34 4567887
Q ss_pred HHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 320 VLNACV---------PSHQWKGVFWVFKQLRKSGLKPSAATYGLA---MESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 320 li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+.-.. ..++++.+..+|...+......-..+|... .......+...++.- ....++.|...+.++
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH--hhHHHHHHHHHHHHH
Confidence 776543 234577889999998853221112222110 000000000011111 112344556666553
Q ss_pred hh--cCC---C------------C-----C---HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 388 EQ--RGV---V------------G-----T---ASVYYELACCLCNNG-------RWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 388 ~~--~~~---~------------~-----d---~~t~~~lI~~~~~~g-------~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
.. .++ . | + ...|...|.---.++ ..+.+..+|++.... +.-+...|
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW 346 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIW 346 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHH
Confidence 21 111 0 1 0 245666665443333 123456778887762 33455667
Q ss_pred HHHHHHHHcCCCHHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-
Q 003016 436 TGLIISSMDGGHIDDCI-SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD- 513 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~-~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd- 513 (857)
.....-+...|+.++|. .+|+.....++.+...|-..+...-+.|++++|.++|+.+..........+. .-.|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~----~~~p~~ 422 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM----EDDPTN 422 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH----HHSTTC
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh----hccCcc
Confidence 77777777789999996 9999998878888888999999999999999999999998763100000000 00132
Q ss_pred -----------HhHhhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC
Q 003016 514 -----------EYTYSSMLEASATAHQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRA-GKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 514 -----------~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~-G~~~~A~~~~~~m~~~gi 580 (857)
...|...+....+.|+.+.|..+|....+. +. +....|......-.+. ++.+.|..+|+...+. .
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 236888888888889999999999999875 21 1233343333232344 4589999999988876 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCcc--CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHI--TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p--~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
.-+...|...+......|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.+.+.+.- |+.+.+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHH
Confidence 3466777888888888899999999999987543322 33688888888889999999999999999774 4444444
Q ss_pred H
Q 003016 659 N 659 (857)
Q Consensus 659 ~ 659 (857)
.
T Consensus 579 ~ 579 (679)
T 4e6h_A 579 E 579 (679)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-10 Score=112.25 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
++...|..+...+.+.|++++|+..|++... --+.+...+..+-..+.+.|++++|...|+...+..+.+...|..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3445678888889999999999999998876 23445677888888899999999999999998875566788899999
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 474 KVYSRN-----------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 474 ~~~~~~-----------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
..|.+. |++++|+..|++..+.. | +...|..+-..+...|++++|...|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---------------PRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999 99999999999998855 6 45678888889999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+.. .+...+..+...|...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 877 788889999999999999999999999988752 2357788888888889999999999988763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-10 Score=112.21 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
+++...+..+...+...|++++|...++.+++.. +.+...|..+...|.+.|++++|...|++..+. -+.+...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 4566788888889999999999999999998753 347889999999999999999999999998874 1335788
Q ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003016 267 YHSVAVTLGQV-----------GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (857)
Q Consensus 267 ~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~ 335 (857)
|..+...+... |++++|...|++..+.. +-+...|..+-..+...|++++|..
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----------------PRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999 99999999999887742 3367788888888889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHH
Q 003016 336 VFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A 415 (857)
.|++..+.. .+...+ ..+...|...|++++|...|++..+.+. .+...+..+...+.+.|++++|
T Consensus 140 ~~~~al~~~--~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 140 SLKQALALE--DTPEIR------------SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHC--CCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------
T ss_pred HHHHHHhcc--cchHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHH
Confidence 999988876 555554 7788888888999999888888877653 2456677788888888888888
Q ss_pred HHHHHHHH
Q 003016 416 MLVVEKIK 423 (857)
Q Consensus 416 ~~l~~~m~ 423 (857)
...|++..
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88877654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-10 Score=118.11 Aligned_cols=222 Identities=10% Similarity=-0.068 Sum_probs=173.4
Q ss_pred HcCCHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 373 EEGKINEAVAAVRNMEQRGVV---GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~~~~~---~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
..|++++|...|+++.+.... .+..+|..+..+|...|++++|...|++.... .+.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 457889999999998876421 23567888899999999999999999998873 2345778888999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCC
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 529 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~ 529 (857)
+|...|+...+..+.+..+|..+...|.+.|++++|...|+++.... |+...+...+..+...|+
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---------------PNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHhcC
Confidence 99999999988555678889999999999999999999999998855 666555556666677799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 530 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI--P-HPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~--p-~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
+++|...+....... +++...+ .++..+...+..++|...++...+.... | +...|..+...+...|++++|...
T Consensus 160 ~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998777642 3333333 3666677788888899988887654211 1 156788888889999999999999
Q ss_pred HHHhhhC
Q 003016 607 INAMAYA 613 (857)
Q Consensus 607 ~~~M~~~ 613 (857)
+++....
T Consensus 238 ~~~al~~ 244 (275)
T 1xnf_A 238 FKLAVAN 244 (275)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9998743
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-10 Score=117.28 Aligned_cols=221 Identities=9% Similarity=-0.065 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
.+|..+...|...|++++|...|++..+. .+.+..+|..+...|...|++++|...|++.....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 107 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------- 107 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------
Confidence 34444444444444444444444444432 11234444444444444555555555544444321
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.+..+|..+...+...|++++|...|+.+.+.. |+.... ...+..+...|+.++|...|++..
T Consensus 108 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 108 --PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFR------------SLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp --TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH------------HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHH------------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2233444444444445555555555555444432 222211 122222233345555555554443
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
.... ++...|. ++..+...++.++|+..+..... ..|+ ..++..+...|.+.|++++|...|+......+
T Consensus 172 ~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 3221 1111122 33444444444555555544432 1111 23445555555555666666655555554211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELF 489 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf 489 (857)
.+. .....++...|++++|++-+
T Consensus 247 ~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTC---HHHHHHHHHHHHHHHC----
T ss_pred hhH---HHHHHHHHHHHHHHhhHHHH
Confidence 122 22233444555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-08 Score=104.17 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMH 302 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~ 302 (857)
+..++..+-..|...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 5566667777777777777887777777662 356677777777777 777888888777776542
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----c
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----E 374 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~ 374 (857)
+..++..+-..|.. .+++++|...|++..+.+ +...+ ..|-..|.. .
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------ASLGGIYHDGKVVT 127 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHCSSSC
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------HHHHHHHHcCCCcc
Confidence 56667777777777 778888888887777764 34443 667777777 7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CC
Q 003016 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GG 446 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g 446 (857)
++.++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+ .+ +...+..+-..|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888887777665 44556667777777 7788888888887776 32 34566667777777 78
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~lf~~M~~~g 496 (857)
++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888877663 236677777788887 888888888888888766
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-08 Score=104.04 Aligned_cols=223 Identities=8% Similarity=-0.052 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFK 338 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~ 338 (857)
+..++..+...|...|++++|...|++..+.+ +..++..+...|.. .+++++|...|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 45666677777777777777777777766532 34556666666776 777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CC
Q 003016 339 QLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NG 410 (857)
Q Consensus 339 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g 410 (857)
+..+.+ +...+ ..|...|.. .++.++|...|++..+.+ +...+..+...|.. .+
T Consensus 67 ~a~~~~---~~~a~------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 67 KACDLN---YSNGC------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHTT---CHHHH------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHCC---CHHHH------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 776665 33333 556666666 777777777777766654 45556666666666 67
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCH
Q 003016 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMF 482 (857)
Q Consensus 411 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~ 482 (857)
++++|+..|++..+ .+ +...+..+-..|.. .++.++|...|+...+. .+...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccH
Confidence 77777777776665 32 33444555555555 66666666666665542 234555556666666 6666
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh----cCCHHHHHHHHHHHHHc
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT----AHQWEYFEYVYKGMALS 543 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~m~~~ 543 (857)
++|+..|++..+.+ | ...+..+-..|.. .++.++|...|++..+.
T Consensus 203 ~~A~~~~~~a~~~~---------------~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 203 KEALARYSKACELE---------------N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHTT---------------C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---------------C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66666666665543 2 3344444445555 55555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=110.66 Aligned_cols=202 Identities=11% Similarity=0.106 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
...+|..+...+...|++++|..+|+++.... +.+...|..+...+...|++++|...++.+.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----------------KEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp --------------------CCTTHHHHHTTC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666667777777777777777776642 34566777777777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
... .+...+ ..+...|...|++++|...|+++.+.+. .+...|..+...|.+.|++++|...++++
T Consensus 86 ~~~-~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 86 LDS-SAATAY------------YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HCT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCC-cchHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 531 133333 6677777777777777777777766542 24556777777788888888888888877
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
... .+.+...+..+...+.+.|++++|...|+.+....+.+..+|..+...|.+.|++++|.+.|+++....
T Consensus 152 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 152 VEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 662 233556677777778888888888888888776555667788888888888888888888888887754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=110.95 Aligned_cols=198 Identities=13% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..|..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|...|+++....
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 34444455555555555555555555441 12234555555555555555555555555554431
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.+..+|..+...+...|++++|.+.++++.+... .+...+ ..+...|.+.|++++|...++++.
T Consensus 88 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 88 --SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLF------------YMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHH------------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH------------HHHHHHHHHhccHHHHHHHHHHHH
Confidence 22444555555555555555555555555544321 122222 445555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
+... .+...|..+...|.+.|++++|...|++.... .+.+..++..+...|...|++++|...|+.+.+
T Consensus 153 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 153 ELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4322 23444555555555555555555555555441 122344555555555555666666665555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-09 Score=110.15 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC--HHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYHSV 270 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd--~~t~~~l 270 (857)
+......+...|+++.|...++.+++..+. +..++..+...|...|++++|...|++..+. +-.|+ ..+|..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHH
Confidence 334445556666666666666666654221 3345666666666666666666666666652 21111 2346666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
...|...|++++|...|++..... +.+..+|..+...|...|++++|...|++..+. .|+..
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 142 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD----------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDP 142 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcH
Confidence 666666666666666666665532 234456666666666666666666666666554 23222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR---WQDAMLVVEKIKSLRH 427 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~---~~~A~~l~~~m~~~~g 427 (857)
.. |..+...+...+++++|...|++..+.... +...|..+..++...|+ +++|...|++......
T Consensus 143 ~~-----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 143 KV-----------FYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 21 134441222334666666666666554322 24445555666666665 5666666666554221
Q ss_pred CCCc------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 428 SKPL------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 428 ~~pd------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
-.|+ ..+|..+-..|...|++++|...|+...+-.+.+...+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 2222 1345556666666677777776666666533334444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-09 Score=119.55 Aligned_cols=286 Identities=10% Similarity=-0.014 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhh
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-----IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~ 300 (857)
.....+..+-..+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|...|++.....
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------ 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------
Confidence 35666777778888889999999999888774 233 3578888888999999999999888765421
Q ss_pred hhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC--
Q 003016 301 MHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGK-- 376 (857)
Q Consensus 301 m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~-- 376 (857)
++. ...| ...+|..+...|...|++++|...+.+..+... .++.... ..++..+...|...|+
T Consensus 78 --~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 78 --RTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--------ARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp --HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--------HHHHHHHHHHHHHHHHTC
T ss_pred --Hhc---cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch--------HHHHHHHHHHHHHcCCcc
Confidence 000 0112 255677888889999999999999988765311 0121111 1124788889999999
Q ss_pred ------------------HHHHHHHHHHHhhc----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--
Q 003016 377 ------------------INEAVAAVRNMEQR----GVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-- 431 (857)
Q Consensus 377 ------------------~~~A~~lf~~m~~~----~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-- 431 (857)
+++|...+++.... +.. ....+|..+...|...|++++|...|++......-.++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999888875432 111 12346777888888899999999888877652111122
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 003016 432 --EITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL 503 (857)
Q Consensus 432 --~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~ 503 (857)
..++..+...|...|++++|...++....- -.++ ..++..+...|.+.|++++|...|++.......
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 299 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 299 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----
Confidence 235677777788888888888888776541 1111 456677777778888888888887776553200
Q ss_pred CCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 504 SGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 504 ~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.+..+ ...++..+...|...|++++|...+++..+
T Consensus 300 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 ----LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00001 133455555666666666666666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-09 Score=108.30 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=77.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CCC
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV--VGT 395 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~--~~d 395 (857)
.....+...|++++|...|+...+.. |+.. .+ ..+...|...|++++|...|++..+... ...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIY------------NRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTH------------HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 34444555666666666666655432 2211 22 4455555566666666666655554221 111
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...|...|++++|+..|++..... +.+..++..+...|...|++++|...|+...+..+.+...|..+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 2235555555555555555555555555411 12233455555555555555555555555544333344444444412
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~ 494 (857)
+...+++++|.+.|++..+
T Consensus 152 ~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2222355555555555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-09 Score=118.62 Aligned_cols=282 Identities=13% Similarity=0.013 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 003016 261 YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVPSHQWKGVFWV 336 (857)
Q Consensus 261 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~~g~~~~A~~l 336 (857)
.+....+......+...|++++|...|++..... +.+ ..+|..+...|...|++++|...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4567778888889999999999999999998753 223 35788888899999999999999
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCC----HHHHHHHHHHHHHCC
Q 003016 337 FKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGT----ASVYYELACCLCNNG 410 (857)
Q Consensus 337 ~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d----~~t~~~lI~~~~~~g 410 (857)
+++.....- ..+.... ..++..+...|...|++++|...|++..+... ..+ ..++..+...|...|
T Consensus 70 ~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGE--------AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 998754310 0111111 11247888899999999999999987654311 011 446788888888889
Q ss_pred C--------------------HHHHHHHHHHHHhc---CCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCC
Q 003016 411 R--------------------WQDAMLVVEKIKSL---RHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDH--CEP 464 (857)
Q Consensus 411 ~--------------------~~~A~~l~~~m~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p 464 (857)
+ +++|...+.+.... .+..|. ..++..+...|...|++++|...|+...+. -.+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888765441 111111 234666667777777777777777776541 112
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 465 N----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 465 ~----~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
+ ..+|..+...|...|++++|...|++....... .+..+ ...++..+...|...|++++|...+++
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 2 235666777777777777777777766542200 00000 133455555556666666666666655
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 540 MALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 540 m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m 575 (857)
.... +-.+. ..++..+...|...|++++|..+++..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5432 10111 223444444444555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-09 Score=118.74 Aligned_cols=284 Identities=11% Similarity=-0.012 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-I----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
..+..+...+...|++++|...|++..+. .|+ . ..|..+...|...|++++|...|++..... +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~ 117 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------K 117 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------H
Confidence 34455666788889999999999988874 233 2 478888888999999999999988876431 0
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC------
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGK------ 376 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~------ 376 (857)
..- .......+|..+...|...|++++|...+.+..+..- ..+.... ..++..+...|...|+
T Consensus 118 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 118 SMN--DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE--------GRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred Hcc--CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH--------HHHHHHHHHHHHHcCccccccc
Confidence 000 0122456788888899999999999999998865411 0111111 1224788889999999
Q ss_pred -----------HHHHHHHHHHHhhc----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHH
Q 003016 377 -----------INEAVAAVRNMEQR----GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFT 436 (857)
Q Consensus 377 -----------~~~A~~lf~~m~~~----~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~ 436 (857)
+++|...+++..+. +. .....+|..+...|...|++++|+..|++......-.++ ..++.
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999888875432 11 112346777888888899999998888877652110111 22566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH---CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~---~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.+...|...|++++|...|+..... .. ....++..+...|.+.|++++|...|++....... .+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~ 338 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE---------LGD 338 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------HTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------CCC
Confidence 7777778888888888888776551 10 11456677777777778888887777776543200 000
Q ss_pred CC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 511 KP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 511 ~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.+ ...++..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 122444455555555666666665555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-09 Score=120.75 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL----VVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~----~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+..+...+...|++++|...|+++.... +.+. .+|..+...|...|++++|...+++
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG----------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566778899999999999999998753 2233 4788888899999999999999998
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----C-CCCCHHHHHHHHHHHHHCCC--
Q 003016 340 LRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----G-VVGTASVYYELACCLCNNGR-- 411 (857)
Q Consensus 340 m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~-~~~d~~t~~~lI~~~~~~g~-- 411 (857)
..+..- ..+.... ..++..+...|...|++++|...|++..+. + ......+|..+...|...|+
T Consensus 112 al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 112 DLTLAKSMNDRLGE--------AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 865310 0111111 122578889999999999999999886543 1 11224467888888999999
Q ss_pred ---------------HHHHHHHHHHHHhc---CCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC----H
Q 003016 412 ---------------WQDAMLVVEKIKSL---RHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN----I 466 (857)
Q Consensus 412 ---------------~~~A~~l~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~----~ 466 (857)
+++|+..+.+.... .+..+ ...++..+...|...|++++|...|+...+. -.++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 88888888775441 11111 1235667777778888888888888776551 0112 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.++..+...|...|++++|.+.|++....... .........++..+...+...|++++|...+++..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVE--------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777777788888888877776553200 00000012345555555556666666666665544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=115.10 Aligned_cols=245 Identities=14% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+......+...|++++|...|+++.... +.+ ...|..+...+...|++++|...+++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666778889999999999999988753 223 46788888899999999999999988
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCC----HHHHHHHHHHHHHCCC--
Q 003016 340 LRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGT----ASVYYELACCLCNNGR-- 411 (857)
Q Consensus 340 m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d----~~t~~~lI~~~~~~g~-- 411 (857)
..+... .++.... ..++..+...|...|++++|...|++..+... .++ ..++..+...|...|+
T Consensus 69 al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 69 DLTLARTIGDQLGE--------AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhcccccHHH--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 754310 0111111 11247888899999999999999988654211 112 3467788888888888
Q ss_pred ------------------HHHHHHHHHHHHhc---CCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC--
Q 003016 412 ------------------WQDAMLVVEKIKSL---RHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN-- 465 (857)
Q Consensus 412 ------------------~~~A~~l~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~-- 465 (857)
+++|...+.+.... .+..+ ...++..+...+...|++++|...++...+. -.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 88888888765431 11111 1234666666677777777777777766541 0111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 466 --IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 466 --~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
..++..+...|...|++++|...|++....... .+..+ ...++..+...+...|++++|...+++..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 235666666777777777777777665542100 00000 12344445555555566666555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-09 Score=113.57 Aligned_cols=280 Identities=11% Similarity=-0.013 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR---- 390 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~---- 390 (857)
..+...-..+...|++++|...|+++.+.... +.... ...+..+...|...|++++|...+++..+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTL--------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 34555566788999999999999999886422 22111 112478899999999999999999886532
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCC------------------
Q 003016 391 GVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGGH------------------ 447 (857)
Q Consensus 391 ~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~------------------ 447 (857)
+.. ....+|..+...|...|++++|...|.+......-.++ ..++..+...|...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 211 22456888889999999999999999887652111122 3367778888888888
Q ss_pred --HHHHHHHHHHHhhC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhh
Q 003016 448 --IDDCISIFQHMKDH---C---EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYS 518 (857)
Q Consensus 448 --~~~A~~if~~m~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~ 518 (857)
+++|...++....- . .....++..+...|...|++++|.+.|++....... .+..+ ...++.
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~ 227 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------FGDKAAERRAYS 227 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---------cCChHHHHHHHH
Confidence 88898888876541 1 112356788888889999999999999887653200 00001 123677
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 003016 519 SMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFT 588 (857)
Q Consensus 519 ~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~ 588 (857)
.+...+...|++++|...+++.... +..+. ..++..+...|...|++++|..+++...+. +-.+ ...++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7778888889999999888887643 11111 346667777788888999888888876543 1111 134666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 589 EMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
.+...+...|++++|...+++...
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 777778888888888888887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=112.00 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR-PHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.|..+-..+...|++++|+..++.+++..+ .+..+|+.+-..|.+.|+ +++|+..|++..+. -+.+...|+.+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~ 172 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 444444555555666666666665555322 245555555555555554 56666555555542 12244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
..++...|++++|+..|+++.... +-+...|..+..++.+.|++++|+..|+++++.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld----------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l------- 229 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD----------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------- 229 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC----------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Confidence 555555555555555555555431 234555555555555555555555555555543
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHh
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN-NGRWQDA-----MLVVEKIKS 424 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~-~g~~~~A-----~~l~~~m~~ 424 (857)
+.. +...|+.+..+|.+ .|..++| +..|++...
T Consensus 230 ----------------------------------------~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 230 ----------------------------------------DVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp ----------------------------------------CTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------CCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 321 33344444444544 3333444 355555544
Q ss_pred cCCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-
Q 003016 425 LRHSKPLEITFTGLIISSMDGG--HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND---------MFSKAKELFEET- 492 (857)
Q Consensus 425 ~~g~~pd~~t~~~ll~a~~~~g--~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~lf~~M- 492 (857)
. .+-+...|+.+...+.+.| ++++|...+..+ +..+.+...+..+...|.+.| ..++|+++|+++
T Consensus 269 l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 269 L--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp H--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred H--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 1 1223445666666666666 467777777766 434456778888888888764 358999999998
Q ss_pred HHcC
Q 003016 493 TRAN 496 (857)
Q Consensus 493 ~~~g 496 (857)
.+..
T Consensus 346 ~~~D 349 (382)
T 2h6f_A 346 KEKD 349 (382)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 6633
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-06 Score=103.96 Aligned_cols=433 Identities=10% Similarity=0.039 Sum_probs=294.9
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCcCCCCCCC
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
.+.+...|..+++...+.+.+..+..+|+.+... ++.+...|...+..-.+.++ .+.+..+|+..+.... ..|+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~--~~~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL--GNND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS--CCCC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC--CCCC
Confidence 4578899999999999999999999999999876 35566788888888888888 9999999999876421 1378
Q ss_pred HHHHHHHHHHHHHcCCh--------hHHHHHHHHhHHcCCC-CCC-HHHHHHHHHHHH---------hcCCHHHHHHHHH
Q 003016 228 RFVYTKLLAILGKAGRP--------HEALRIFNLMLEDCNL-YPD-IAAYHSVAVTLG---------QVGLLKELVKLIE 288 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~--------~~A~~vf~~m~~~~gi-~pd-~~t~~~li~~~~---------~~g~~~~A~~l~~ 288 (857)
+..|..-+....+.+.. +...++|+......|. .++ ...|...+.-.. ..++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88999888877766654 3355889887776677 564 578888876543 2345778999999
Q ss_pred HHHcCCChhhhhhhhhcCCCCCCCCHHHHHH---HHHHH----------HhcCChHHHHHHHHHHHHc--CCC-------
Q 003016 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA---VLNAC----------VPSHQWKGVFWVFKQLRKS--GLK------- 346 (857)
Q Consensus 289 ~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~---li~~~----------~~~g~~~~A~~l~~~m~~~--g~~------- 346 (857)
+....+. ..-..+|.. +.... -...+++.|...+.++... ++.
T Consensus 219 raL~iP~---------------~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 219 TLLCQPM---------------DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHTTSCC---------------SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHhCcc---------------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 9886541 111222221 11110 0112334455555554321 221
Q ss_pred --------C-----CHHHHHHHHHHHHHhHHHHHHHHHHHcC-------CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003016 347 --------P-----SAATYGLAMESYRRCLLKVLVRAFWEEG-------KINEAVAAVRNMEQRGVVGTASVYYELACCL 406 (857)
Q Consensus 347 --------p-----d~~t~~~ll~~~~~~~~~~Li~~y~k~g-------~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~ 406 (857)
| +... ...|...+..--..+ ....+..+|++...... -+...|-..+.-+
T Consensus 284 ~~~~~~~~p~~~~~~~~q---------l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQ---------LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQ 353 (679)
T ss_dssp TTCCTTTSCCTTCCCHHH---------HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred ccchhccCCCCchhHHHH---------HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 1 0111 122455555433322 13345677887766532 3667788888888
Q ss_pred HHCCCHHHHH-HHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC----------CCC----------
Q 003016 407 CNNGRWQDAM-LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC----------EPN---------- 465 (857)
Q Consensus 407 ~~~g~~~~A~-~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~----------~p~---------- 465 (857)
...|+.++|. .+|++... .++.+...+...+...-+.|+++.|..+|+.+...+ .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 8999999997 99998876 444566667778888889999999999999987521 132
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccccCCCCCCCCCCHhHhhhhHHHHHhc-CCHHHHHHHHHHHH
Q 003016 466 --IGTVNAMLKVYSRNDMFSKAKELFEETTRA-NSSGYTFLSGDGAPLKPDEYTYSSMLEASATA-HQWEYFEYVYKGMA 541 (857)
Q Consensus 466 --~~~~~~li~~~~~~g~~~~A~~lf~~M~~~-g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~l~~~m~ 541 (857)
..+|...+....+.|..+.|..+|.+.... + ...+......+.+. .+. ++.+.|..+|+..+
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------------~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------------LVTPDIYLENAYIE--YHISKDTKTACKVLELGL 497 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG------------GSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------------CCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHH
Confidence 347888888888999999999999999875 2 01222232222222 233 55899999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE 619 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~ 619 (857)
+. +.-+...+...+......|+.+.|..+|+........+ ....|...+.--...|+.+.+..+.++|... .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 75 44456666777887888999999999999988764322 3468888888888899999999999998754 3443
Q ss_pred HHHHHHHHHhh
Q 003016 620 RQWTELFESNE 630 (857)
Q Consensus 620 ~~~~~Ll~a~~ 630 (857)
.....+..-|+
T Consensus 575 ~~~~~f~~ry~ 585 (679)
T 4e6h_A 575 NKLEEFTNKYK 585 (679)
T ss_dssp CHHHHHHHHTC
T ss_pred cHHHHHHHHhc
Confidence 34444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=112.74 Aligned_cols=231 Identities=11% Similarity=0.050 Sum_probs=176.3
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS-WRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
....+..+-..+...|.+++|+..|+...+.. +-+...|..+-..+...|+ +++|+..++.+++..+ .+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P----~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----KNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC----CCHHHHH
Confidence 45667777778888999999999999999865 3456788889999999996 9999999999988643 3889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.+-.+|.+.|++++|+..|+++.+. -+.+...|..+..++.+.|++++|+..|+++.+.. +-
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~----------------P~ 232 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----------------VR 232 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------TT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------CC
Confidence 9999999999999999999999884 23478999999999999999999999999998853 45
Q ss_pred CHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC--CHHHHHHHH
Q 003016 313 DLVVYNAVLNACVP-SHQWKGV-----FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG--KINEAVAAV 384 (857)
Q Consensus 313 d~~t~~~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g--~~~~A~~lf 384 (857)
+...|+.+..++.. .|..++| +..|+..++ +.|+.... |+.+...|.+.| +.++|...+
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a-----------~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESA-----------WNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHH-----------HHHHHHHHTTTCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHH-----------HHHHHHHHHccCccchHHHHHHH
Confidence 78899999999988 6665777 366666665 46666554 666666666666 466666666
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHH
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNG---------RWQDAMLVVEKI 422 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g---------~~~~A~~l~~~m 422 (857)
.++ +. ...+...+..+..+|.+.| ..++|+.+|+++
T Consensus 300 ~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 300 LDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 665 22 2233445556666665543 135566666555
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.5e-09 Score=116.58 Aligned_cols=343 Identities=10% Similarity=-0.002 Sum_probs=215.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP---HEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~---~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
+...+.+.|++++|.++|....+.+ +...+..|-.+|...|++ ++|...|++..+ .+...+..|..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----TSPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------CCTGGGTCC---------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 5556677889999999998886642 233455666677777888 899999988876 25666667766
Q ss_pred HHHhcC-----CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcC
Q 003016 273 TLGQVG-----LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW---KGVFWVFKQLRKSG 344 (857)
Q Consensus 273 ~~~~~g-----~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g 344 (857)
.+...| ++++|...|++....| .++ .+..|...|...+.. ..+.+.+......|
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g----------------~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANG----------------EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTT----------------CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCC----------------CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 555555 7789999999988765 233 555566666654433 34555555555555
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Q 003016 345 LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----INEAVAAVRNMEQRGVVGTASVYYELACCLCNNG---RWQDAML 417 (857)
Q Consensus 345 ~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g---~~~~A~~ 417 (857)
. |... ..|...|...+. .+.+..++......+. + .+..|...|.+.| +.++|+.
T Consensus 140 ~-~~a~--------------~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--~--a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 140 Y-PEAG--------------LAQVLLYRTQGTYDQHLDDVERICKAALNTTD--I--CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp C-TTHH--------------HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--T--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-HHHH--------------HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--H--HHHHHHHHHHHcCCcccHHHHHH
Confidence 3 2222 567777777774 4555555555444332 2 5788888888899 8999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHcC----CCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHH
Q 003016 418 VVEKIKSLRHSKPLEITFTGLIISSMDG----GHIDDCISIFQHMKDHCEPNIGTVNAMLKV-Y--SRNDMFSKAKELFE 490 (857)
Q Consensus 418 l~~~m~~~~g~~pd~~t~~~ll~a~~~~----g~~~~A~~if~~m~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~lf~ 490 (857)
.|++... .| .++...+..+-..|... ++.++|...|+... +-+...+..|-.. | ...+++++|.+.|+
T Consensus 201 ~~~~aa~-~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVS-RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHH-TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHH-CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9998887 34 44555555666666554 78999999999887 3566777777776 4 46889999999999
Q ss_pred HHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 003016 491 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH-----QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR---- 561 (857)
Q Consensus 491 ~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g-----~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~---- 561 (857)
+..+.| +...+..+-..|. .| +.++|...|++.. . -+...+..|-..|..
T Consensus 276 ~Aa~~g----------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 276 NGRAAD----------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp HHHHTT----------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTS
T ss_pred HHHHCC----------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCC
Confidence 988755 4455656666665 45 8999999998876 3 355666666666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCC
Q 003016 562 AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M~~~~~ 615 (857)
..+.++|...|+...+.|. | .....|-..|.. ..+.++|..+++.....|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3389999999999888764 2 233334344432 3578899999888876664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-08 Score=103.74 Aligned_cols=220 Identities=12% Similarity=0.042 Sum_probs=174.8
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLG-------QVGLL-------KELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+.|..+|++.... .+.+...|..+...+. +.|++ ++|..+|++....- .
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------L 95 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------------T
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------------C
Confidence 6788888888773 2346778888887775 35886 89999999998741 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
+.+...|..+...+.+.|++++|..+|++..+. .|+.... +|..+...+.+.|++++|..+|++..+.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTL----------VYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHH----------HHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccH----------HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 346678999999999999999999999999974 5553321 1488889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCC--C
Q 003016 391 GVVGTASVYYELACCLC-NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEP--N 465 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~-~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p--~ 465 (857)
+.. +...|........ ..|+.++|..+|+..... .+-+...+..++..+.+.|++++|..+|+..... +.| .
T Consensus 164 ~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 532 3444554433322 379999999999998873 2335677899999999999999999999999884 454 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|..++..+.+.|+.+.|..+++++.+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999999999998865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-07 Score=102.04 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCC
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV-------PSHQW-------KGVFWVFKQLRKSGLK 346 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~ 346 (857)
++|..+|++.... .+.+...|..+...+. +.|++ ++|..+|++..+. +.
T Consensus 33 ~~a~~~~~~al~~----------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV----------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LL 95 (308)
T ss_dssp HHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHH----------------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hC
Confidence 6888999998874 3557788888887775 35886 8999999999873 34
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
|+.... |..+...+.+.|++++|..+|++..+....-...+|..+...+.+.|++++|..+|++.....
T Consensus 96 p~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 96 KKNMLL-----------YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp TTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred cccHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 554433 588999999999999999999999875422112379999999999999999999999998722
Q ss_pred CCCCcHHHHHHHHHHH-HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 003016 427 HSKPLEITFTGLIISS-MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505 (857)
Q Consensus 427 g~~pd~~t~~~ll~a~-~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~ 505 (857)
+++...|....... ...|+.++|..+|+...+..+.+...|..++..+.+.|++++|..+|++.....
T Consensus 165 --p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------- 233 (308)
T 2ond_A 165 --RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--------- 233 (308)
T ss_dssp --TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---------
T ss_pred --CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc---------
Confidence 23334444443332 237999999999999987555678999999999999999999999999998852
Q ss_pred CCCCCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 506 DGAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 506 ~~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
.+.| ....|...+......|+.+.|..+++++.+.
T Consensus 234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0345 3567888888888889999999999988864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=116.12 Aligned_cols=350 Identities=10% Similarity=-0.019 Sum_probs=226.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL---KELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+...+.+.|++++|.+.|.+..+. | +...+..|-..|...|+. ++|..+|++... .
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----------------~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----------------T 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----------------C
Confidence 556778889999999999999874 3 445566666777778888 899999988753 2
Q ss_pred CCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHH---HHHH
Q 003016 311 EPDLVVYNAVLNACVPSH-----QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKIN---EAVA 382 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~---~A~~ 382 (857)
+...+..+-..+...+ ++++|...|+...+.|... .+ ..|...|...+..+ ++.+
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~------------~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TL------------IPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CH------------HHHHHHHHHCGGGCTTCCHHH
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HH------------HHHHHHHHhCCCCCCCHHHHH
Confidence 5556666666455544 7889999999999877433 22 56667777665543 3445
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEITFTGLIISSMDGG---HIDDCISIFQHM 458 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~a~~~~g---~~~~A~~if~~m 458 (857)
.+......|.. ..+..+...|...+.++++.......... ....|+ .+..|-..|...| +.++|...|+..
T Consensus 131 ~~~~a~~~g~~---~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 131 QISQWQAAGYP---EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHTCT---THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 55555555542 24667778888888555544443332220 112333 7778888888899 999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH-H--HhcCCHH
Q 003016 459 KDHCEPNIGTVNAMLKVYSRN----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA-S--ATAHQWE 531 (857)
Q Consensus 459 ~~~~~p~~~~~~~li~~~~~~----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a-~--~~~g~~~ 531 (857)
.+.-.++...+..|-.+|... +++++|.+.|++.. .| +...+..+-.. + ...++.+
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----------------~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----------------YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----------------STHHHHHHHHHHHHSGGGCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----------------CHHHHHHHHHHHHhCCCCCCHH
Confidence 886667777777788888655 79999999999986 44 33444444444 2 4579999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 003016 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-----KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEK 602 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-----~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~ 602 (857)
+|...|++..+.| +...+..|-..|. .| ++++|.+.|+... .| ++..+..|-..|.. ..++++
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9999999999877 5666667777776 55 9999999999877 33 55666666555544 239999
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHH-HhhhccCHHHHHHHHHHHHhCCCC
Q 003016 603 AVALINAMAYAPFHITERQWTELFE-SNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 603 A~~l~~~M~~~~~~p~~~~~~~Ll~-a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
|..+|++....|.......+..++. +.+...+.+.+...++...+.|..
T Consensus 341 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 341 ALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999887775433333333332 234467899999999888887743
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=114.76 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+..+|..+...|...|++++|..+|+++.... .+...........++..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL--------EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677777888888888888888888776520 0000000233566788899999999999999999999876
Q ss_pred c------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CC-CCCHHHHHHHHHHHHHC
Q 003016 343 S------GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR------GV-VGTASVYYELACCLCNN 409 (857)
Q Consensus 343 ~------g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~------~~-~~d~~t~~~lI~~~~~~ 409 (857)
. +-.|.... ++..+...|...|++++|...|++..+. +. .....+|..+...|...
T Consensus 98 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 98 IREKTLGKDHPAVAA-----------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHHCTTCHHHHH-----------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCChHHHH-----------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 4 22233222 2588999999999999999999988754 22 22345688888999999
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--------CCCC-------HHH
Q 003016 410 GRWQDAMLVVEKIKSLR-----HSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDH--------CEPN-------IGT 468 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~~-----g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--------~~p~-------~~~ 468 (857)
|++++|+..|++..... +..|+ ..++..+...|...|++++|...|+.+.+. ..+. ...
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999999887620 22333 346788888899999999999999888651 1111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+..+...+...+.+.+|...+....... ..+..+|..+..+|...|++++|...|++..+
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDS--------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC-------CCSCCCC---------C--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCC--------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2223333334445555555555554322 12345666777777777888888777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=107.21 Aligned_cols=240 Identities=12% Similarity=0.122 Sum_probs=167.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCC-
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQR-------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKP- 430 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~-------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~p- 430 (857)
+..+...|...|++++|..+|+++.+. +......+|..+...|...|++++|...|++..... +..|
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 488999999999999999999998763 333445678889999999999999999999887631 2223
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHC--------EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 502 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~ 502 (857)
...++..+...|...|++++|...|+...+.. ......+..+...|...|++++|.++|+++......
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---- 185 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT---- 185 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----
Confidence 35678889999999999999999999887621 224567888999999999999999999998774100
Q ss_pred cCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHHcCCHHH
Q 003016 503 LSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS-------GCQLDQT-------KHAWLLVEASRAGKCHL 567 (857)
Q Consensus 503 ~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-------g~~pd~~-------t~~~Ll~~~~~~G~~~~ 567 (857)
...+..| ...++..+...+...|++++|...++++.+. ...+... .+..+...+...+.+.+
T Consensus 186 ---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 186 ---KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp ---TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred ---HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 0000134 3457888888999999999999999998863 1222211 22222233344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 568 LEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 568 A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+...++...... ..+..+|..+...|.+.|++++|...+++..
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666554421 2245688889999999999999999999865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-08 Score=93.46 Aligned_cols=161 Identities=15% Similarity=0.048 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
|..|-..|.+.|++++|...|++..+.+.. +..+|..+..+|.+.|++++|+..+...... .+.+...+..+...+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 466777777777777777777776665432 4556677777777777777777777766552 2233445555556666
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~ 522 (857)
..++++.+...+.......+.+...+..+...|.+.|++++|++.|++..+.. | +..+|..+..
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~lg~ 149 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------PGFIRAYQSIGL 149 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------chhhhHHHHHHH
Confidence 66777777777666665444556666666667777777777777777666643 4 3455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~ 542 (857)
++...|++++|...|++.++
T Consensus 150 ~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.1e-08 Score=107.02 Aligned_cols=304 Identities=8% Similarity=-0.021 Sum_probs=200.2
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCC-CCCCHHHHHHHHHHHH--HcCChhHHH-----------HHHHHhHHcCCCCCCHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKR-DLKSRFVYTKLLAILG--KAGRPHEAL-----------RIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~n~Li~~y~--k~g~~~~A~-----------~vf~~m~~~~gi~pd~~t 266 (857)
.+.++++.|..+.+.+....... ..++...|-.++..-. -.+.++.+. +.|+.+... ..+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 34577777777777764432211 1123344444443211 123333344 666666542 011111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 267 ------YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 267 ------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
|......+...|++++|...|++....-. +. .-.+ ...+|..+...|...|+++.|...+.+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------~~---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI--------FV---KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG--------GC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh--------hC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22255667889999999999999976420 00 0111 346788888999999999999999999
Q ss_pred HHHcCCC-CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----C-CCCCHHHHHHHHHHHHHCCCH
Q 003016 340 LRKSGLK-PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----G-VVGTASVYYELACCLCNNGRW 412 (857)
Q Consensus 340 m~~~g~~-pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~-~~~d~~t~~~lI~~~~~~g~~ 412 (857)
..+.--. ++ .... ..+++.+...|...|++++|...|++..+. + ......+|+.+..+|...|++
T Consensus 169 al~~~~~~~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRL--------LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHTCSTTHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCccchHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 8754211 11 1111 122488899999999999999999887643 1 111134688899999999999
Q ss_pred HHHHHHHHHHHhc---CCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHhcCC--
Q 003016 413 QDAMLVVEKIKSL---RHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPNIGTVNAMLKVYSRNDM-- 481 (857)
Q Consensus 413 ~~A~~l~~~m~~~---~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-----~~p~~~~~~~li~~~~~~g~-- 481 (857)
++|+..|++.... .+. +....++..+...|.+.|++++|...++....- .+.....++.+-..|...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999987651 133 333567888999999999999999999987651 11122335677788888898
Q ss_pred -HHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 482 -FSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 482 -~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+++|+.++++.. ..|+ ...+..+...|...|++++|...+++..+
T Consensus 321 ~~~~al~~~~~~~----------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESKM----------------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc----------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888887752 2333 34566677788888999999888887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-07 Score=104.99 Aligned_cols=303 Identities=9% Similarity=-0.015 Sum_probs=176.0
Q ss_pred HHHcCChhHHHHHHHHhHHcC-CCCCC--HHHHHHHHHHHH--hcCCHHHHH-----------HHHHHHHcCCChhhhhh
Q 003016 238 LGKAGRPHEALRIFNLMLEDC-NLYPD--IAAYHSVAVTLG--QVGLLKELV-----------KLIERMRQKPSKRIKNM 301 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~-gi~pd--~~t~~~li~~~~--~~g~~~~A~-----------~l~~~m~~~g~~~l~~m 301 (857)
+.+.+++++|..+++++.... .+..| ...|-.++..-. ..+.++.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~------- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ------- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-------
Confidence 456899999999999987632 22233 344444443211 223333333 5555554321
Q ss_pred hhhcCCCCCCCC-HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 302 HRKNWDPVLEPD-LV---VYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 302 ~~k~f~~~~~pd-~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
...+ .. .|......+...|++++|...|++..+.- -.++.... ..++..+...|...|+
T Consensus 95 --------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 95 --------ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEK--------AEFFFKMSESYYYMKQ 158 (383)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHH--------HHHHHHHHHHHHHTTC
T ss_pred --------CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHH--------HHHHHHHHHHHHHcCC
Confidence 0101 11 11224445778999999999999997641 12343322 1224888899999999
Q ss_pred HHHHHHHHHHHhhcC--C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCC
Q 003016 377 INEAVAAVRNMEQRG--V----VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGG 446 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~--~----~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g 446 (857)
.+.|...+++..+.. . .....+++.+...|...|++++|+..|.+......-.++ ..++..+-..|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 999999998865421 1 112356778888889999999999988877652111111 235677777778888
Q ss_pred CHHHHHHHHHHHhh-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhh
Q 003016 447 HIDDCISIFQHMKD-----HC-EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSS 519 (857)
Q Consensus 447 ~~~~A~~if~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ 519 (857)
++++|...|+...+ +. +....++..+...|.+.|++++|...|++....... .-.|. ...+..
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~ 308 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK----------AGDVIYLSEFEF 308 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHH
Confidence 88888888877765 23 233566777777778888888888877776542100 00011 112334
Q ss_pred hHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 520 MLEASATAHQ---WEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 520 ll~a~~~~g~---~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
+-..+...|+ +++|..++++. +..|+. ..+..+...|...|++++|..+|+...
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444555555 44444444432 222222 244445555566666666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=91.99 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
+...|..+-..|.+.|++++|.+.|++..+. .|+.... |..+...|.+.|++++|...+........
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-----------~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVET-----------LLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999886 4544332 48899999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
. +...+..+...+...++++.|...+.+.... .+.+...+..+-..|.+.|++++|...|+...+..+.+..+|..+
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 147 (184)
T 3vtx_A 71 T-SAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSI 147 (184)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHH
Confidence 3 4566888888999999999999999998772 334567788889999999999999999999988666788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 473 LKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|.+.|++++|++.|++..+..
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999998844
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.7e-08 Score=110.84 Aligned_cols=210 Identities=8% Similarity=-0.072 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP-HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284 (857)
Q Consensus 206 ~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~ 284 (857)
++.+.+.++..... ...+...+..+-..|...|++ ++|+..|++..+. -+.+...|..+..+|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56677777766543 234788999999999999999 9999999998874 1235889999999999999999999
Q ss_pred HHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS---------HQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 285 ~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
..|++..+ ..|+...|..+...+... |++++|.+.|++..+.. |+....
T Consensus 158 ~~~~~al~-----------------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~--- 215 (474)
T 4abn_A 158 TCFSGALT-----------------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRS--- 215 (474)
T ss_dssp HHHHHHHT-----------------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH---
T ss_pred HHHHHHHh-----------------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHH---
Confidence 99999987 457778899999999999 99999999999998863 443322
Q ss_pred HHHHHHhHHHHHHHHHHHc--------CCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 356 MESYRRCLLKVLVRAFWEE--------GKINEAVAAVRNMEQRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~--------g~~~~A~~lf~~m~~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
|..+...|... |++++|...|++..+.+.. -+...|..+..+|...|++++|+..|++....
T Consensus 216 --------~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 216 --------WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp --------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36777777777 7788888888777665421 35566777777777777777777777766552
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
. +-+...+..+...+...|++++|..
T Consensus 288 ~--p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 288 D--PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122334444444444444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-08 Score=110.83 Aligned_cols=213 Identities=8% Similarity=-0.036 Sum_probs=181.2
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL-KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
.++.|...++..... -+.+...|..+...|...|++ ++|.+.|++..+.. +.+...|..+.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------p~~~~a~~~lg 144 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------PELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------CCCHHHHHHHH
Confidence 366777788877652 234788999999999999999 99999999998753 44688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcCC
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE---------GKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~---------g~~~~A~~lf~~m~~~~~ 392 (857)
..|.+.|++++|.+.|+...+. .|+...+ ..+...|... |++++|...|++..+.+.
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------------~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTH--CKNKVSL------------QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTT--CCCHHHH------------HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCHHHH------------HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999876 4775444 7888899999 999999999999987753
Q ss_pred CCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 393 VGTASVYYELACCLCNN--------GRWQDAMLVVEKIKSLRHSKP----LEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~--------g~~~~A~~l~~~m~~~~g~~p----d~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
-+...|..+..+|... |++++|+..|++.... .| +...+..+-.+|...|++++|...|+...+
T Consensus 211 -~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 211 -LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577899999999998 9999999999999873 34 677899999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 461 HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 461 ~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
..+.+...+..+...+...|++++|++.+.+
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556788899999999999999999876644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-06 Score=94.36 Aligned_cols=277 Identities=12% Similarity=-0.022 Sum_probs=181.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV----VYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~----t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
......+...|++++|...+++..... ...+.. +++.+...+...|++++|...+.+....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 82 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL---------------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 82 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC---------------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455667899999999999987653 222332 4666677788899999999999988653
Q ss_pred CC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCC--C-CHHHHHHHHHHHHHCCCHHHH
Q 003016 344 GL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----GVV--G-TASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 344 g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~~--~-d~~t~~~lI~~~~~~g~~~~A 415 (857)
.. .++.... ..+++.+...|...|++++|...+++.... +.. | ...++..+...|...|++++|
T Consensus 83 ~~~~~~~~~~--------~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 83 ARQHDVWHYA--------LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCcHHHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 21 1122211 012367888899999999999999887542 221 2 234566788889999999999
Q ss_pred HHHHHHHHhcCC-CCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCC-CHHHHH-----HHHHHHHhcCCHHHH
Q 003016 416 MLVVEKIKSLRH-SKP--LEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEP-NIGTVN-----AMLKVYSRNDMFSKA 485 (857)
Q Consensus 416 ~~l~~~m~~~~g-~~p--d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-~~p-~~~~~~-----~li~~~~~~g~~~~A 485 (857)
...+.+...... ..+ ...++..+...+...|++++|...++..... -.+ +...|. ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 999998775221 111 2356777888889999999999999988651 111 111222 233457789999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHH
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLDQT-KHAWLLVEAS 560 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd~~-t~~~Ll~~~~ 560 (857)
...+.+...... .........+..+...+...|++++|...++..... |..++.. .+..+-..+.
T Consensus 235 ~~~~~~a~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 235 ANWLRHTAKPEF----------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHHHHSCCCCC----------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCC----------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 999988764320 000011224556667777788888888888776542 2222222 4444555566
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003016 561 RAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 561 ~~G~~~~A~~~~~~m~~ 577 (857)
..|+.++|...++....
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-07 Score=88.63 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+..+...|...|++++|..+++.+.+.. +.+...|..+...+...|++++|...+++.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444444444444433321 112334444444444444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-07 Score=88.18 Aligned_cols=162 Identities=10% Similarity=0.006 Sum_probs=131.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
+..+...|...|++++|...|+++.+... .+..+|..+...|...|++++|...+++.... .+.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 46778888899999999999998876543 35677888899999999999999999998772 2345677888888888
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
..|++++|...|+.+....+.+...+..+...|.+.|++++|.+.|++..... ..+..++..+...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~ 153 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------------PNEGKVHRAIAFS 153 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------------ccchHHHHHHHHH
Confidence 89999999999998887656678888888899999999999999999888754 1245677777788
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003016 524 SATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|++++|...++++.+
T Consensus 154 ~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-06 Score=92.93 Aligned_cols=272 Identities=8% Similarity=-0.014 Sum_probs=190.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA----SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFT 436 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~----~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~ 436 (857)
..+...+...|++++|...+++........+. .+++.+...|...|++++|...+.+......-.++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455677899999999999997765433332 24666778888999999999999887652111122 23356
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC-----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH-----CE--P-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~-----~~--p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
.+-..+...|++++|...++..... .. | ....+..+...|...|++++|...+++.......
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------- 167 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---------- 167 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc----------
Confidence 6777889999999999999988651 11 2 2456677888999999999999999998765410
Q ss_pred CCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003016 509 PLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD--QTKHA----WLLVEASRAGKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 509 ~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~----~Ll~~~~~~G~~~~A~~~~~~m~~~gi 580 (857)
..+ ...+|..+...+...|++++|...+++.....-.++ ..... .....+...|++++|...++.......
T Consensus 168 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 168 -YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp -SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred -cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 111 234567777788889999999999998875421211 11111 233447799999999999988765422
Q ss_pred CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCCccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHh
Q 003016 581 IP---HPLFFTEMLIQAIVQSNYEKAVALINAMAY----APFHITER-QWTELFESNEDRISRDKLEKLLNALCN 647 (857)
Q Consensus 581 ~p---~~~~~~~li~~~~~~g~~~~A~~l~~~M~~----~~~~p~~~-~~~~Ll~a~~~~g~~e~~~~l~~~m~~ 647 (857)
.+ ....+..+...+...|++++|...+++... .|..++.. ++..+-.++...|+.+.+...++...+
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 133566777888899999999999988643 23323332 555556677888999999888776653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-06 Score=96.48 Aligned_cols=317 Identities=11% Similarity=-0.004 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCcCCC-CCCCHHHHHHHHHHHH--HcCChhHHH---------HHH
Q 003016 186 LMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKR-DLKSRFVYTKLLAILG--KAGRPHEAL---------RIF 251 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~--~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~n~Li~~y~--k~g~~~~A~---------~vf 251 (857)
+.|+...-..|-..| ...++++.|..+.+.+.+..... ..+++..|-.|+..-. -.+....+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555666666 66778888888887764432111 1123444444444311 112222222 555
Q ss_pred HHhHHcCCCCC-C-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC----CHHHHHHHHH
Q 003016 252 NLMLEDCNLYP-D-IA---AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP----DLVVYNAVLN 322 (857)
Q Consensus 252 ~~m~~~~gi~p-d-~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p----d~~t~~~li~ 322 (857)
+.+... . .+ + .. .|......+...|++++|...|++...... ..+ ...++..+..
T Consensus 86 ~~i~~~-~-~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~a~~~~~lg~ 149 (378)
T 3q15_A 86 ETIETP-Q-KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP--------------FVSDDIEKAEFHFKVAE 149 (378)
T ss_dssp HHHHGG-G-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG--------------GCCCHHHHHHHHHHHHH
T ss_pred HHHhcc-C-CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh--------------hCCChHHHHHHHHHHHH
Confidence 555431 0 01 1 11 233344556789999999999999876520 112 2457888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-CCC
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLK-PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----GV-VGT 395 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~-~~d 395 (857)
.|...|+++.|...+.+..+.... ++ .... ..+++.+...|...|++++|...|++..+. +. ...
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRT--------IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988753211 11 1111 112488999999999999999999886542 11 112
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----CCCCHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPNIG 467 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~---~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-----~~p~~~ 467 (857)
..+++.+..+|...|++++|+..|.+.... .+.+....++..+...|.+.|+.++|...++...+- .+....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346888899999999999999999987651 122333567888889999999999999999998762 122244
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDM---FSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 468 ~~~~li~~~~~~g~---~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.++.+-..|...|+ +.+|+..+++. + ..|+. ..+..+...|...|++++|...|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~---~-------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK---N-------------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT---T-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC---C-------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677777888 78888888763 2 22332 3455677778888888888888877653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=96.68 Aligned_cols=316 Identities=9% Similarity=0.007 Sum_probs=180.0
Q ss_pred CCCHHHHHHHHHHH--HHcCChhHHHHHHHHhHHcC-CCC--CCHHHHHHHHHHHH--hcCCHHH---------HHHHHH
Q 003016 225 LKSRFVYTKLLAIL--GKAGRPHEALRIFNLMLEDC-NLY--PDIAAYHSVAVTLG--QVGLLKE---------LVKLIE 288 (857)
Q Consensus 225 ~~~~~~~n~Li~~y--~k~g~~~~A~~vf~~m~~~~-gi~--pd~~t~~~li~~~~--~~g~~~~---------A~~l~~ 288 (857)
.|+..+-+.|-..| .+.+++++|..+++++.... .+. +++..|-.++..-. -.+.+.. ....++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35677778888887 88999999999999876531 122 23444444443311 1111111 225555
Q ss_pred HHHcCCChhhhhhhhhcCCCCCC-CCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhH
Q 003016 289 RMRQKPSKRIKNMHRKNWDPVLE-PDLV---VYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCL 363 (857)
Q Consensus 289 ~m~~~g~~~l~~m~~k~f~~~~~-pd~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~ 363 (857)
.+.... .. .+.. .|......+...|++++|...|.+..+... .++.... ..+
T Consensus 87 ~i~~~~---------------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------a~~ 143 (378)
T 3q15_A 87 TIETPQ---------------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEK--------AEF 143 (378)
T ss_dssp HHHGGG---------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHH--------HHH
T ss_pred HHhccC---------------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHH--------HHH
Confidence 554321 01 1111 122233346789999999999999876421 2333222 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC-cHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQR----GV-V-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLR---HSKP-LEI 433 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~-~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~ 433 (857)
+..+...|...|+.+.|...+++..+. +- . ....+++.+..+|...|++++|...|.+..... +..+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478888999999999999999876542 11 1 124567788888889999999998888766521 1111 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
++..+-..|...|++++|...|+.... +.+....++..+...|.+.|++++|...|++....... .
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~ 294 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA---------R 294 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT---------T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------c
Confidence 466666677777777777777777655 33333566667777777777777777777776654300 0
Q ss_pred CCCCC-HhHhhhhHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 509 PLKPD-EYTYSSMLEASATAHQ---WEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 509 ~~~pd-~~t~~~ll~a~~~~g~---~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
-.|. ...+..+-..+...++ +.+|...++. .+..|+. ..+..+...|...|++++|..+|+...
T Consensus 295 -~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 295 -SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0111 1223333333334455 4444444443 2222222 233444445556666666666555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-07 Score=96.41 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC------
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH------ 461 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~------ 461 (857)
....+|..+...|...|++++|+..|.+..... +..| ...++..+...|...|++++|...|......
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 345678889999999999999999999887631 2223 3457888999999999999999999988652
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 462 --CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 462 --~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+....++..+...|...|++++|...|++....... ...+-.| ...++..+...|...|++++|...++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT-------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234677889999999999999999999998875000 0000124 34678888899999999999999999
Q ss_pred HHHHc-------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003016 539 GMALS-------GCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLE---A-G-EIP-HPLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 539 ~m~~~-------g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~---~-g-i~p-~~~~~~~li~~~~~~g~~~~A~ 604 (857)
+..+. ...+... .+..+...+...+....+.. +..+.. . + ..| ...+|..+...|...|++++|.
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 194 EILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp HHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98863 1223322 22222222322222222222 211111 1 1 112 3457888888999999999999
Q ss_pred HHHHHhhh
Q 003016 605 ALINAMAY 612 (857)
Q Consensus 605 ~l~~~M~~ 612 (857)
.++++...
T Consensus 273 ~~~~~al~ 280 (283)
T 3edt_B 273 TLEDCASR 280 (283)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=95.55 Aligned_cols=173 Identities=15% Similarity=0.161 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS------GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+....+|..+...|...|++++|...+.+..+. +-.|.... ++..+...|...|++++|...|
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-----------TLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-----------HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-----------HHHHHHHHHHHhccHHHHHHHH
Confidence 335678889999999999999999999998765 22232222 2588999999999999999999
Q ss_pred HHHhhc------C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCC-cHHHHHHHHHHHHcCCCHHHH
Q 003016 385 RNMEQR------G-VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-----RHSKP-LEITFTGLIISSMDGGHIDDC 451 (857)
Q Consensus 385 ~~m~~~------~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-----~g~~p-d~~t~~~ll~a~~~~g~~~~A 451 (857)
++..+. . ......+|..+...|...|++++|...|++.... ....| ...++..+...|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 987654 1 1233567888999999999999999999998773 01133 346788899999999999999
Q ss_pred HHHHHHHhhC------------------------------------------------C-CCCHHHHHHHHHHHHhcCCH
Q 003016 452 ISIFQHMKDH------------------------------------------------C-EPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 452 ~~if~~m~~~------------------------------------------------~-~p~~~~~~~li~~~~~~g~~ 482 (857)
...|+...+. . +....++..+...|.+.|++
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 268 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9999887641 0 12245688899999999999
Q ss_pred HHHHHHHHHHHH
Q 003016 483 SKAKELFEETTR 494 (857)
Q Consensus 483 ~~A~~lf~~M~~ 494 (857)
++|..+|++..+
T Consensus 269 ~~A~~~~~~al~ 280 (283)
T 3edt_B 269 EAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=85.81 Aligned_cols=173 Identities=12% Similarity=0.031 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
..|+..|......+...|++++|...|....+....++...+ ..+...|.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTA------------YNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHH------------HHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 346688888899999999999999999999987654676665 45888999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC-
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-----ITFTGLIISSMDGGHIDDCISIFQHMKDHCEP- 464 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p- 464 (857)
+.. +..+|..+..+|...|++++|+..|++......-.+.. .+|..+-..+...|++++|...|+...+..+.
T Consensus 72 ~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 72 NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 533 56678999999999999999999999988732222211 45777778888999999999999999874334
Q ss_pred -CHHHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHHcC
Q 003016 465 -NIGTVNAMLKVYSRNDMF---------------------------SKAKELFEETTRAN 496 (857)
Q Consensus 465 -~~~~~~~li~~~~~~g~~---------------------------~~A~~lf~~M~~~g 496 (857)
+...|..+...|...|.. ++|+..|++..+..
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467888888888888887 88999999988854
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-06 Score=78.67 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.|..+...|...|++++|..+|+++.+.+. .+..+|..+...+...|++++|...|+++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 357888999999999999999999987653 35677888999999999999999999999872 234567788899999
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|..+|+.+....+.+...+..+...|.+.|++++|...|.++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999999988555678899999999999999999999999998754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-06 Score=83.76 Aligned_cols=189 Identities=10% Similarity=-0.023 Sum_probs=146.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...|.+.|++++|...|++..+.+..++...|..+..+|...|++++|+..|++... ..+-+..++..+-..|..
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH
Confidence 677888999999999999999998877656777788899999999999999999999987 223356678889999999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---H
Q 003016 445 GGHIDDCISIFQHMKDHCEPNI-------GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---E 514 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~ 514 (857)
.|++++|...|+...+..+.+. ..|..+-..+.+.|++++|++.|++..+.. |+ .
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~ 153 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---------------SKKWKT 153 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---------------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---------------CCcccH
Confidence 9999999999999988545556 568888888999999999999999998744 76 3
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
..|..+...|... +..+++++...+ ..+...|..... ...+.+++|...|+...+.
T Consensus 154 ~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 154 DALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 4566666666543 444455555443 233444544432 3456789999999998874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=104.61 Aligned_cols=165 Identities=23% Similarity=0.240 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
+..+|+.|-..|.+.|++++|+..|++..+. .| +..+|+.+..+|.+.|++++|+..|++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------- 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------- 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 4566777777777777777777777776652 23 36667777777777777777777777766532
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+-+..+|+.+-.++.+.|++++|++.|++..+. .|+.... |+.|...|.+.|++++|+..|+
T Consensus 74 -----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a-----------~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 74 -----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADA-----------HSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Confidence 234666777777777777777777777776654 3332221 3666666777777777777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+..+.+.. +...|..+..+|...|++++|.+.|++..+
T Consensus 136 ~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 136 TALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 66654422 344566666777777777777666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-06 Score=76.45 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+..+...+...|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+++... .+.+...|..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHH
Confidence 45666777788888888888888887642 236777888888888888888888888888763 234577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
..+...|++++|...|+++.... +.+..+|..+...+.+.|++++|...+.++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888887642 446777888888888888888888888888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-06 Score=102.21 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=138.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
++.|-..|.+.|++++|...|++..+.+.. +..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+-.+|.
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 588999999999999999999998876532 46789999999999999999999999988731 234678899999999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~ 522 (857)
..|++++|.+.|++..+--+.+...|+.+...|.+.|++++|++.|++..+.. |+ ...|..+..
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---------------P~~~~a~~~L~~ 153 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---------------PDFPDAYCNLAH 153 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SCCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCChHHHhhhhh
Confidence 99999999999999887555678899999999999999999999999998854 74 567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~ 542 (857)
++...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999888887664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-05 Score=84.59 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE-ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 594 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~ 594 (857)
.|...+....+.++.+.|..+|... +.. ..+..+|...... +...++.+.|..+|+...+.. .-++..|...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555555555566777777777777 211 1233344322222 122335777888887766642 12344556666666
Q ss_pred HHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 595 IVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 595 ~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
...|+.+.|..+|++.. -....|...+.--...|+.+.++.+++...
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777777777762 135566666666666677777777665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.2e-06 Score=86.33 Aligned_cols=215 Identities=11% Similarity=-0.020 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCCCCC-HHHHHHHHHHHHhcCCH
Q 003016 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED---CNLYPD-IAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi~pd-~~t~~~li~~~~~~g~~ 280 (857)
++++|...|... ...|...|++++|...|.+..+- .|-.++ ..+|+.+..+|...|++
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 377777776654 34677889999999999877551 121122 56899999999999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEP--DLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSGLKP-SAATYGLAM 356 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p--d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll 356 (857)
++|+..|++..... ... -.+ -..+|+.+...|... |++++|...|++..+..... +....
T Consensus 94 ~~A~~~~~~Al~l~--------~~~----g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~---- 157 (292)
T 1qqe_A 94 VNAVDSLENAIQIF--------THR----GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS---- 157 (292)
T ss_dssp HHHHHHHHHHHHHH--------HHT----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHHHHHH--------HHc----CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH----
Confidence 99999999876531 000 011 145788899999996 99999999999987642111 11110
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~------~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
..+++.+...|.+.|++++|...|++..+....... ..|..+..++...|++++|...|++... +.|
T Consensus 158 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p 230 (292)
T 1qqe_A 158 ----NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDP 230 (292)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C--
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCC
Confidence 112478899999999999999999998875533221 2577788889999999999999998765 233
Q ss_pred cH------HHHHHHHHHHH--cCCCHHHHHHHHHHHhh
Q 003016 431 LE------ITFTGLIISSM--DGGHIDDCISIFQHMKD 460 (857)
Q Consensus 431 d~------~t~~~ll~a~~--~~g~~~~A~~if~~m~~ 460 (857)
+. ..+..++.+|. ..+++++|...|+.+..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 32 23455666665 56788888888877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.2e-06 Score=86.76 Aligned_cols=210 Identities=7% Similarity=-0.037 Sum_probs=141.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC----HHHHHHH
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLK--SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----IAAYHSV 270 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----~~t~~~l 270 (857)
...|...|++++|...|............+ ...+|+.+..+|.+.|++++|+..|++..+-..-..+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667888888888888776542211111 1468889999999999999999998877652100012 4578899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003016 271 AVTLGQV-GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348 (857)
Q Consensus 271 i~~~~~~-g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 348 (857)
...|... |++++|+..|++....... . +..+ ...+|+.+...+.+.|++++|...|++..+......
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~--------~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQ--------D---QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHH--------T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh--------C---CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 9999996 9999999999998763200 0 0000 145688899999999999999999999988654332
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-C---HHHHHHHHHHHH--HCCCHHHHHHHHHHH
Q 003016 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-T---ASVYYELACCLC--NNGRWQDAMLVVEKI 422 (857)
Q Consensus 349 ~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d---~~t~~~lI~~~~--~~g~~~~A~~l~~~m 422 (857)
...|.. ...|..+..+|...|++++|...|++..+..... + ...+..++.+|. ..+++++|+..|+.+
T Consensus 193 ~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 193 LSQWSL------KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp TTGGGH------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred cccHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 211000 0013677888999999999999999987643211 1 123445566664 456788898888765
Q ss_pred H
Q 003016 423 K 423 (857)
Q Consensus 423 ~ 423 (857)
.
T Consensus 267 ~ 267 (292)
T 1qqe_A 267 M 267 (292)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.37 E-value=9.7e-05 Score=77.77 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=128.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003016 380 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHM 458 (857)
Q Consensus 380 A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m 458 (857)
|...|++....+ .++..++..+..++...|++++|+.++.+... .+- .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877665 44555666788889999999999999988755 332 235566788889999999999999999998
Q ss_pred hhCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCC
Q 003016 459 KDHCEP-----NIGTVNAMLKVYS--R--NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 529 (857)
Q Consensus 459 ~~~~~p-----~~~~~~~li~~~~--~--~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~ 529 (857)
.+- .| +..+...|..++. . .++..+|..+|+++.... |+..+-..++.++.+.|+
T Consensus 163 ~~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---------------p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 163 TNA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---------------PTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp HHH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------------CSHHHHHHHHHHHHHHTC
T ss_pred Hhc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------------CCcccHHHHHHHHHHcCC
Confidence 762 35 2455555655533 2 338999999999987654 664444555557888899
Q ss_pred HHHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 530 WEYFEYVYKGMALS-----GC---QL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 530 ~~~a~~l~~~m~~~-----g~---~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+++|...++.+.+. .- .| |+.+...+|......|+ +|.+++.++.+.
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999876642 11 24 45566566666666776 788888888874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00013 Score=76.91 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=163.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
-..-.|++..+..-...+.. ......---+..+|...|++... ..-.|....+..+ ..|...+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~l-a~~~~~~--- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLY-VQFLDTK--- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHH-HHHHTTT---
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHH-HHHhccc---
Confidence 34456788777763333321 22223344456788888876632 1223443333333 3333433
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHhHhhhhHHHHHhcC
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASATAH 528 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~-pd~~t~~~ll~a~~~~g 528 (857)
|...|++....-.++..++..+...+...|++++|++++.+....+ -. -+...+..++..+.+.|
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-------------~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-------------EAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-------------CSTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------CCcCcHHHHHHHHHHHHHCC
Confidence 6677777665334666666788888999999999999999886655 11 14556777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 529 QWEYFEYVYKGMALSGCQL-----DQTKHAWLLVE--ASRAG--KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 529 ~~~~a~~l~~~m~~~g~~p-----d~~t~~~Ll~~--~~~~G--~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
+.+.|.++++.|.+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 151 r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 151 NVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp CHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 99999999999976 456 35555666655 33334 899999999998765 3543333444457888899
Q ss_pred HHHHHHHHHHhhhC-----CC---cc-CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 600 YEKAVALINAMAYA-----PF---HI-TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 600 ~~~A~~l~~~M~~~-----~~---~p-~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
+++|...++.+... .. .| +..++..++......|+ .+.+++.++.+. .|+.|.+..+
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~ 292 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHH
Confidence 99999999876532 00 23 33566566555555565 788888888866 4667766655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0014 Score=74.47 Aligned_cols=354 Identities=11% Similarity=0.058 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHH----hc
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR-PHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLG----QV 277 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~----~~ 277 (857)
|+.+.+..+|+..+. ..|++..|...+....+.+. .+....+|+......|..| +...|...+.-+. ..
T Consensus 28 ~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 667777777776653 23566677776666666553 3445666666665444323 5566666665543 23
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhh--hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHR--KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~--k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
|+.+.+..+|++....+....-.++. .-|+ ...+..+...++.... +.+..|..+++.+...--..+..
T Consensus 103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE--~~~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~----- 173 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFE--LELNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVK----- 173 (493)
T ss_dssp HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH--HHHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHH-----
T ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH--HHhccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHH-----
Confidence 45666777777776543100000000 0000 0001111111221111 22333444444443210000111
Q ss_pred HHHHHHhHHHHHHHHHHHc--CC-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 003016 356 MESYRRCLLKVLVRAFWEE--GK-----INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 428 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~--g~-----~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~ 428 (857)
.|...+..-... |- .+.+..+|+++..... -+...|...+.-+.+.|+.+.|..+|++... .
T Consensus 174 -------~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~-- 242 (493)
T 2uy1_A 174 -------NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M-- 242 (493)
T ss_dssp -------HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--
T ss_pred -------HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-C--
Confidence 234444432221 11 3456778888776543 3467788888888999999999999999988 3
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 429 KPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---C----------EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 429 ~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---~----------~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
|....+.. +|+.....++. ++.+... . ......|...+..+-+.+..+.|..+|... ..
T Consensus 243 -P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 -SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp -CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred -CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 44332211 22222111111 2222210 0 011356777777777888999999999998 32
Q ss_pred CCCCccccCCCCCCCCCCHhHhh--hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 496 NSSGYTFLSGDGAPLKPDEYTYS--SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 573 (857)
Q Consensus 496 g~~~~~~~~~~~~~~~pd~~t~~--~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~ 573 (857)
. .++...|. +.+... ..++.+.|..+|+...+.- .-++..+...++...+.|+.+.|..+|+
T Consensus 315 ~--------------~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 315 E--------------GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp S--------------CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C--------------CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12333443 222222 2347999999999988752 2234455666777788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 574 SLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 574 ~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
.+. .....|...+.--...|+.+.+..+++++.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 972 257788888887788899999999888864
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.7e-05 Score=75.91 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHH----------------HHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTG----------------LIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~----------------ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
...+.+.|++++|+..|++.... .|+. ..+.. +-..|.+.|++++|...|+...+..+.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 34455666777777776666551 2332 12222 3334444444444444444444322333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...|..+...|...|++++|+..|++...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-05 Score=78.28 Aligned_cols=178 Identities=9% Similarity=-0.005 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAA 266 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t 266 (857)
.+...+......+...|+++.|...|+.+++..+.. .....++..+...|.+.|++++|...|++......-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455667777788889999999999999998753321 011678888999999999999999999999874211222 456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH-----------------HHHH
Q 003016 267 YHSVAVTLGQ--------VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY-----------------NAVL 321 (857)
Q Consensus 267 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~-----------------~~li 321 (857)
|..+..++.. .|++++|...|++..... +.+...+ ..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----------------p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----------------PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----------------TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----------------cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888 999999999999988753 1122222 4557
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcC
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE----------GKINEAVAAVRNMEQRG 391 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~----------g~~~~A~~lf~~m~~~~ 391 (857)
..|.+.|++++|...|+.+.+.. |+..... ..+..+..+|.+. |++++|...|+...+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~--------~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY--PDTPWAD--------DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTSTTHH--------HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC--CCCchHH--------HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 77899999999999999998864 3311100 0125677777765 88899999999888765
Q ss_pred C
Q 003016 392 V 392 (857)
Q Consensus 392 ~ 392 (857)
.
T Consensus 226 p 226 (261)
T 3qky_A 226 P 226 (261)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.1e-05 Score=76.81 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhh
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m 301 (857)
.+...+-.+...+.+.|++++|...|+.+.... |+ ...|..+..+|.+.|++++|...|++......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p------ 83 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ------ 83 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC------
Confidence 466777788889999999999999999998742 43 67889999999999999999999999987530
Q ss_pred hhhcCCCCCCC-CHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcC
Q 003016 302 HRKNWDPVLEP-DLVVYNAVLNACVP--------SHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 302 ~~k~f~~~~~p-d~~t~~~li~~~~~--------~g~~~~A~~l~~~m~~~g 344 (857)
-.| ....+..+..++.. .|++++|...|+++.+..
T Consensus 84 --------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 84 --------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp --------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred --------CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 122 24567777778888 999999999999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00013 Score=73.47 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a 441 (857)
-.+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|+..|++......-.+.. ..+..+-.+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 4566778899999999999999987643321 3567788999999999999999999988733222321 233333333
Q ss_pred HH------------------cCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 442 SM------------------DGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 442 ~~------------------~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
+. ..|+.++|...|+.+.+..+-+...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 33 36789999999999987544444333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-05 Score=74.17 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=120.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA----------------MLKVYSRNDMFSKAKELFEETTRANSSGY 500 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~----------------li~~~~~~g~~~~A~~lf~~M~~~g~~~~ 500 (857)
.....+...|++++|...|+...+..+.+...|.. +...|.+.|++++|+..|++..+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 33456678999999999999988733334566666 8889999999999999999998855
Q ss_pred cccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 003016 501 TFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGK--CHLLEHAFDSLL 576 (857)
Q Consensus 501 ~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~G~--~~~A~~~~~~m~ 576 (857)
| +...|..+...+...|++++|...|++.++. .|+ ...+..+-..|...|. ...+...++...
T Consensus 85 -----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 85 -----------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 6 5678888889999999999999999999874 454 5677777777755543 334455555443
Q ss_pred HCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 003016 577 EAGEIPHPL--FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 624 (857)
Q Consensus 577 ~~gi~p~~~--~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~ 624 (857)
.|+.. .|..+-.++...|++++|+..|++.. ...|+......
T Consensus 152 ----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~ 195 (208)
T 3urz_A 152 ----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKT 195 (208)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHH
T ss_pred ----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHH
Confidence 34433 33444555666799999999999976 45677654433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00019 Score=72.36 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSA-ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
...+..+...+.+.|++++|...|+.+.+.... |.. .. +..+..+|.+.|++++|...|++..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a------------~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQV------------QLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 445566677789999999999999999886432 211 22 2678889999999999999999998765
Q ss_pred CCCCH--HHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCCCCcHHH---------------HH
Q 003016 392 VVGTA--SVYYELACCLCN------------------NGRWQDAMLVVEKIKSLRHSKPLEIT---------------FT 436 (857)
Q Consensus 392 ~~~d~--~t~~~lI~~~~~------------------~g~~~~A~~l~~~m~~~~g~~pd~~t---------------~~ 436 (857)
..... ..+..+..++.+ .|++++|+..|+++.....-.+.... ..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 43221 234444444443 57899999999999873211111110 02
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNI---GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+...|.+.|++++|...|+.+.+..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 344567889999999999999987443333 568889999999999999999999998866
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0012 Score=69.75 Aligned_cols=224 Identities=8% Similarity=0.010 Sum_probs=161.4
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH--
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKG--SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL-- 238 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y-- 238 (857)
.+......++|+.++..+.... |+.. .++.--..+...| .+++++..++.++...++ +..+|+.--..+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHH
Confidence 3444555679999999999865 4444 5677666777778 999999999999876433 666777766666
Q ss_pred --HHc---CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 239 --GKA---GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK--ELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 239 --~k~---g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
.+. +++++++.+++.+.+. -+.|..+|+.-.-.+.+.|.++ ++++.++++.... .
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d----------------~ 177 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD----------------L 177 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----------------T
T ss_pred HHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----------------C
Confidence 555 7899999999999984 4568899999888888889888 9999999998763 5
Q ss_pred CCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHH-HHHHH
Q 003016 312 PDLVVYNAVLNACVPSHQ------WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINE-AVAAV 384 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~-A~~lf 384 (857)
.|...|+.-.......+. ++++++.+..+.... |+..+. |+-+-..+.+.|+..+ +..+.
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~Sa-----------W~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPST-----------WNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHH-----------HHHHHHHHHHTTCCGGGGHHHH
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccH-----------HHHHHHHHHhcCCChHHHHHHH
Confidence 688889877766666665 777777777777653 433332 4666666667666433 44455
Q ss_pred HHHhhcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 385 RNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 385 ~~m~~~~--~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.+..+.+ -+.+...+..+...|.+.|+.++|+++++.+..
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5544332 133556677777777777777777777777764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.8e-05 Score=80.20 Aligned_cols=165 Identities=11% Similarity=0.019 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|++++|...++.+++..+ .+...+..|...|.+.|++++|...|++.... .|+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 187 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN----QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ 187 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence 3445677778888899999999999999987533 37889999999999999999999999998763 4665544
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 268 HSVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 268 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
..... .+.+.+..++|...|++..... +.+...+..+...+...|++++|...|.++.+....
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~----------------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN----------------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC----------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 33333 4677788888999999988752 457888999999999999999999999999987433
Q ss_pred CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 347 PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 347 pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+ ... +..|...|...|+.++|...|++-
T Consensus 252 ~~~~~a------------~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 252 AADGQT------------RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGGGHH------------HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccchH------------HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 21 223 378899999999999998888764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00023 Score=74.97 Aligned_cols=213 Identities=13% Similarity=0.050 Sum_probs=141.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHh
Q 003016 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF---VYTKLLAILGKAGRPHEALRIFNLM 254 (857)
Q Consensus 178 ~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~---~~n~Li~~y~k~g~~~~A~~vf~~m 254 (857)
+..+..-...|+..++..+...+.-.-+ .++.. ....+.. .+...+..+...|++++|..++++.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII-----HFYEV-------LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHHT-------TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhCC-------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334333346888888777777653221 12211 0111222 3334477889999999999999998
Q ss_pred HHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHh
Q 003016 255 LEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVP 326 (857)
Q Consensus 255 ~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~ 326 (857)
.......|+. ..+..+...+...|++++|+..|++...... ..+| ..+|+.+...|..
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~--------------~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--------------TGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC--------------CCSCTTHHHHHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc--------------ccccHHHHHHHHHHHHHHHHH
Confidence 8742223332 2334566777788899999999999987420 1222 3468999999999
Q ss_pred cCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh----cCCCCC-HHHH
Q 003016 327 SHQWKGVFWVFKQLRKS--GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ----RGVVGT-ASVY 399 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~~d-~~t~ 399 (857)
.|++++|...|+++.+. ....+.... ..++..+...|.+.|++++|...+++..+ .+..+. ..+|
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999998742 111122221 11248899999999999999999987653 222222 5678
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHh
Q 003016 400 YELACCLCNNGR-WQDAMLVVEKIKS 424 (857)
Q Consensus 400 ~~lI~~~~~~g~-~~~A~~l~~~m~~ 424 (857)
..+..+|.+.|+ +++|...|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888884 6888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.5e-05 Score=90.15 Aligned_cols=183 Identities=9% Similarity=-0.034 Sum_probs=126.5
Q ss_pred HHCCCHHHHHHHHHHHH--------hcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 407 CNNGRWQDAMLVVEKIK--------SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 407 ~~~g~~~~A~~l~~~m~--------~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
...|++++|+..|++.. . ..+.+...+..+..++...|++++|...|+...+..+.+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888776 2 1123345667777777888888888888888776445567788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 557 (857)
.|++++|++.|++..+.. | +...|..+-.++...|++++ ...|++..+.. +-+...|..+-.
T Consensus 480 ~g~~~~A~~~~~~al~l~---------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 888888888888887754 5 44567777778888888888 88888877642 224567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC--------HHHHHHHHHHh
Q 003016 558 EASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSN--------YEKAVALINAM 610 (857)
Q Consensus 558 ~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~--------~~~A~~l~~~M 610 (857)
+|.+.|++++|...|+...+. .|+ ...|..+..++...|. +++|.+.+..+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888888888888888876653 454 4566666666555443 44555555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00016 Score=76.78 Aligned_cols=127 Identities=7% Similarity=-0.051 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc--
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASATAHQWEYFEYVYKGMALS-- 543 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~-pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-- 543 (857)
.+++.+...|.+ |++++|+..|++....... .+-. --..++..+...+...|++++|...|++..+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~---------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN---------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh---------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344555555555 6666666666555442100 0000 01346666666666666666666666665542
Q ss_pred --CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 003016 544 --GCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPH--PLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 544 --g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~--~~~~~~li~~~~~~g~~~~A~~ 605 (857)
+..+.. ..+..+...+...|++++|...|+... . ..... ......++.++ ..|+.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 111111 144445555566677777777777665 3 11111 11233334433 4566665555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00044 Score=69.01 Aligned_cols=177 Identities=8% Similarity=-0.063 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC----ChhHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG----RPHEAL 248 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g----~~~~A~ 248 (857)
+|+..|+...+.| +...+..+-..|...+++++|...|+...+. .+...+..|-.+|.. + ++++|.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 5667777777765 6777888888888889999999999988764 266788888888887 6 899999
Q ss_pred HHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC-CCHHHHHHHHHH
Q 003016 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE-PDLVVYNAVLNA 323 (857)
Q Consensus 249 ~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~-pd~~t~~~li~~ 323 (857)
..|++..+. -+..++..|-..|.. .+++++|+.+|++....+ .. .+..++..|-..
T Consensus 74 ~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---------------~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 74 QLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---------------ESDAAVDAQMLLGLI 134 (212)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---------------CCcchHHHHHHHHHH
Confidence 999998773 477888888888877 889999999999988765 11 126778888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhcCC
Q 003016 324 CVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE-G-----KINEAVAAVRNMEQRGV 392 (857)
Q Consensus 324 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~-g-----~~~~A~~lf~~m~~~~~ 392 (857)
|.. .+++++|...|+...+.+- +...+ ..|-.+|.+. | +.++|...|+...+.|.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~--~~~a~------------~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSR--TGYAE------------YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSC--TTHHH------------HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCC--CHHHH------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887 7889999999999987622 22233 5666677654 3 88999999988877664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0015 Score=69.10 Aligned_cols=219 Identities=7% Similarity=-0.081 Sum_probs=112.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003016 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG--KINEAVAAVRNMEQRGVVGTASVYYELAC 404 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g--~~~~A~~lf~~m~~~~~~~d~~t~~~lI~ 404 (857)
....++|+.++..++.. .|+..|. |+.--..+...| ++++++..++.+...+... ..+|+.--.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~ta-----------Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTI-----------WIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHH-----------HHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHH
Confidence 33446788888888764 5666664 666666666666 7778888877777665443 233554433
Q ss_pred HH----HHC---CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH--HHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 405 CL----CNN---GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID--DCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 405 ~~----~~~---g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~--~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
.+ ... +++++++.+++.+.. ..+-+..+|+.---.+.+.|..+ ++...++.+.+.-..|...|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33 333 556666666666655 12233444444444444445544 55555555555444455555554444
Q ss_pred HHhcCC------HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHH-HHHHHHHHHHcC--C
Q 003016 476 YSRNDM------FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEY-FEYVYKGMALSG--C 545 (857)
Q Consensus 476 ~~~~g~------~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~-a~~l~~~m~~~g--~ 545 (857)
+.+.|. ++++++.++++.... | |...|+.+-..+...|+... +..+..++...+ -
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~---------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKC---------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHC---------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhC---------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 444444 555555555555433 3 44455554444444444222 222333222211 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 546 ~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
..++.....+...|.+.|+.++|.++++.+.
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1233344444444444455555555555444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-05 Score=73.45 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SM 443 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~ 443 (857)
..+...+.+.|++++|...|++..+.+. .+...|..+...|.+.|++++|+..|+..... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 4566677888888888888888765442 24566888888888888888888888876542 2233222211111 11
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---HhHhhhh
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---EYTYSSM 520 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~~t~~~l 520 (857)
..+....|...|+...+..+.+...+..+...|.+.|++++|...|+++.+.. |+ ...+..+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~a~~~l 150 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN---------------LGAQDGEVKKTF 150 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------TTTTTTHHHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------------cccChHHHHHHH
Confidence 21222345666666665444467777778888888888888888888777644 43 4466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003016 521 LEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~ 541 (857)
...+...|+.++|...|++.+
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 777777777777777776654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00094 Score=70.16 Aligned_cols=168 Identities=12% Similarity=0.026 Sum_probs=115.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHcCCCHHHHHHHHHHHhh-C-CCCC----HHHHH
Q 003016 401 ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMDGGHIDDCISIFQHMKD-H-CEPN----IGTVN 470 (857)
Q Consensus 401 ~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~A~~if~~m~~-~-~~p~----~~~~~ 470 (857)
..+..+...|++++|..++++........|+.. .+..+...+...|++++|...|..... . -.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999887444445532 344566677788899999999999876 2 2223 34789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 003016 471 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALS----GC 545 (857)
Q Consensus 471 ~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~ 545 (857)
.+...|...|++++|+..|++....-.. .....+.. .+|..+...|...|++++|...+++.++. +.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEA--------LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999998742100 00012222 36777778888888888888888776642 22
Q ss_pred CCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003016 546 QLD-QTKHAWLLVEASRAGK-CHLLEHAFDSLL 576 (857)
Q Consensus 546 ~pd-~~t~~~Ll~~~~~~G~-~~~A~~~~~~m~ 576 (857)
.+. ..+|..+-..|.+.|+ +++|.+.|+...
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 222 4466666666777773 577777766543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=7.4e-05 Score=78.73 Aligned_cols=164 Identities=6% Similarity=-0.103 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
+...+..+-..+...|++++|...|+......+.+...+..+...|.+.|++++|...+++.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------------- 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------------- 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------------
Confidence 334455566666677777777777777766444566777777777777777777777777765533
Q ss_pred CCCHhHhhhhH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 003016 511 KPDEYTYSSML-EASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE-IPHPLFFT 588 (857)
Q Consensus 511 ~pd~~t~~~ll-~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi-~p~~~~~~ 588 (857)
|+........ ..+...++.+.|...+++..... +.+...+..+...|...|++++|...|..+....- ..+...+.
T Consensus 182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5443322222 22445566666666676666532 23455666777777777777777777777766421 11245667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 003016 589 EMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+...+...|+.++|...+++-
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHH
Confidence 7777777777777777766653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-05 Score=73.34 Aligned_cols=156 Identities=10% Similarity=0.002 Sum_probs=89.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t 516 (857)
.....+...|++++|...|+...+..+.+...|..+...|.+.|++++|...|++..... |+..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------p~~~- 74 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---------------QDNS- 74 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---------------CCHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---------------CChH-
Confidence 334455566666666666666554333456667777777777777777777777665433 4322
Q ss_pred hhhhHHHH--HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 003016 517 YSSMLEAS--ATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI-PHPLFFTEMLI 592 (857)
Q Consensus 517 ~~~ll~a~--~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~-p~~~~~~~li~ 592 (857)
+..+...+ ...+....+...+++..+. .| +...+..+...+...|++++|...|+.+.+..-. .+...+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 22221111 1111222345666666542 34 3556666666677777777777777776664321 12456666667
Q ss_pred HHHHcCCHHHHHHHHHHh
Q 003016 593 QAIVQSNYEKAVALINAM 610 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M 610 (857)
.+...|+.++|...|++.
T Consensus 153 ~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHCSSCHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHH
Confidence 777777777777777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=87.66 Aligned_cols=178 Identities=13% Similarity=-0.057 Sum_probs=120.6
Q ss_pred HhcCCHHHHHHHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 201 GDKGSWRQAMSVLDWVYGLK----DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
...|++++|.+.++.++... ....+.+...+..+...|.+.|++++|...|++..+. -+.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888888876110 0112235677778888888888888888888887763 12356788888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++++|...|++..+.. +-+...|..+-.++.+.|++++ .+.|++..+.. |+....
T Consensus 480 ~g~~~~A~~~~~~al~l~----------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a---- 536 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF----------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISA---- 536 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS----------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHH----
T ss_pred cCCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHH----
Confidence 888888888888887642 3356677778888888888888 88888887653 433221
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 411 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~ 411 (857)
|..+..+|.+.|++++|...|++..+.+.. +...|..+..++...++
T Consensus 537 -------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 -------AFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 367777888888888888888877654421 23455556666555444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00012 Score=85.26 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|++++|...|++..+.+. .+...|..+...|.+.|++++|...|++..+. .+.+...+..+-..|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3677888888888765542 24667888888888889999999888888762 23346677888888888888888888
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc---CC
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA---HQ 529 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~---g~ 529 (857)
.|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.. | +...+..+...+... |+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---------------PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhhcccc
Confidence 8888877555567888888888888888888888888887754 5 456677777788888 88
Q ss_pred HHHHHHHHHHHHHcC
Q 003016 530 WEYFEYVYKGMALSG 544 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g 544 (857)
.++|.+.+++..+.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00024 Score=75.42 Aligned_cols=177 Identities=10% Similarity=-0.048 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCCCC-CHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK--SRFVYTKLLAILGKAGRPHEALRIFNLMLED---CNLYP-DIAA 266 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi~p-d~~t 266 (857)
|......|...|+++.|...|.+..........+ -..+|+.+...|.+.|++++|+..|++..+- .|-.. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445566777888888888888776543221111 1357788888888888988888888876541 11111 1356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.+...|.. |++++|+..|++..... ... .....-..+++.+...|.+.|++++|...|++..+....
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~--------~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVF--------ENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHH--------HHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHH--------HhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7777788877 88888888888776431 000 000001456777777888888888888888877653110
Q ss_pred -CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 347 -PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 347 -pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
++.... ...+..+...|...|++++|...|++..
T Consensus 188 ~~~~~~~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTC--------YKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111100 0013556666666777777777777765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=85.13 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=117.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.|.+++|...|++..+.. +-+...+..+...+...|++++|...++..++.. +.+..+|..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356788888888877653 3356788889999999999999999999998753 23788999999999999999999
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 248 ~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
...|++..+. -+.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 77 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 77 AVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----------------PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHh
Confidence 9999998874 23457899999999999999999999999998753 44678888999999999
Q ss_pred ---CChHHHHHHHHHHHHcCC
Q 003016 328 ---HQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 328 ---g~~~~A~~l~~~m~~~g~ 345 (857)
|++++|.+.+++..+.+.
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTC
T ss_pred hccccHHHHHHHHHHHHhcCC
Confidence 999999999999988653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00021 Score=70.77 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...|...|++++|...|++.. .|+...|..+..+|.+.|++++|+..|++.... .+.+...+..+-.+|..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 567778889999999999999874 457788999999999999999999999998873 24456788899999999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 445 GGHIDDCISIFQHMKDHCEPNI----------------GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.|++++|...|+...+..+.+. ..|..+..+|.+.|++++|.+.|++.....
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999987433333 788999999999999999999999998754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00049 Score=68.66 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC----CHHHH
Q 003016 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG----LLKEL 283 (857)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g----~~~~A 283 (857)
+|.+.|....+. .+...+..|-.+|...+++++|...|++..+. -+...+..|-..|.. + ++++|
T Consensus 4 eA~~~~~~aa~~------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 356666666543 27778888888999999999999999998874 477888888888887 6 89999
Q ss_pred HHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003016 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKP-SAATYGLAMES 358 (857)
Q Consensus 284 ~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~~ 358 (857)
..+|++....| +..++..|-..|.. .+++++|+..|+...+.|... +...+
T Consensus 73 ~~~~~~A~~~g------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~------ 128 (212)
T 3rjv_A 73 RQLAEKAVEAG------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ------ 128 (212)
T ss_dssp HHHHHHHHHTT------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH------
T ss_pred HHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH------
Confidence 99999987654 56677777777776 789999999999988776421 12333
Q ss_pred HHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHh
Q 003016 359 YRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN-G-----RWQDAMLVVEKIKS 424 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~-g-----~~~~A~~l~~~m~~ 424 (857)
..|-.+|.. .++.++|...|++..+.+ .+...+..|...|... | +.++|...|+...+
T Consensus 129 ------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 129 ------MLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp ------HHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 677778877 788999999998887762 2223466666666653 3 78888888887766
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00021 Score=70.77 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..+..+...|...|++++|...|++.. .|+...|..+...|...|++++|...|++.....
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------------- 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 345566677788899999999888774 3688888888899999999999999998887642
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHhHHHHHHHHHHHc
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL--------------KPSAATYGLAMESYRRCLLKVLVRAFWEE 374 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------~pd~~t~~~ll~~~~~~~~~~Li~~y~k~ 374 (857)
+.+...|..+..++...|++++|...|+...+... .|+.... +..+...|.+.
T Consensus 68 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~ 134 (213)
T 1hh8_A 68 --KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV-----------LYNIAFMYAKK 134 (213)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH-----------HHHHHHHHHHT
T ss_pred --ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH-----------HHHHHHHHHHc
Confidence 44677888888888899999999999988887532 2222221 47888899999
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 003016 375 GKINEAVAAVRNMEQRGVV 393 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~ 393 (857)
|++++|...|+...+....
T Consensus 135 g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 135 EEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHTTCCS
T ss_pred cCHHHHHHHHHHHHHcCcc
Confidence 9999999999998876543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0007 Score=71.18 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=116.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC--HHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE----ITFTGLIISSMDGGHIDDCISIFQHMKDH----CEPN--IGT 468 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~if~~m~~~----~~p~--~~~ 468 (857)
+...+..+...|++++|...+.+........++. ..+..+...+...|++++|...|...... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 4455667788888888888888776622222221 22344556677888999999999887652 1222 558
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----HhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-----EYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
|+.+...|...|++++|+..|++...... ..|+ ..+|..+...|...|++++|...+++..+.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLE------------ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999998873210 1122 257888888899999999999999887653
Q ss_pred C----CCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003016 544 G----CQLD-QTKHAWLLVEASRAGKCHLL-EHAFDSLL 576 (857)
Q Consensus 544 g----~~pd-~~t~~~Ll~~~~~~G~~~~A-~~~~~~m~ 576 (857)
. .... ..+|..+-..|.+.|+.++| ...++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 1111 45677777778888888888 66666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00033 Score=61.94 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+...|++++|...|.++... .+.+..++..+...+...|++++|..+|+.+....+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445777777888888888888888887762 233556777778888888888888888888877555677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 888899999999988887754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00068 Score=71.26 Aligned_cols=174 Identities=9% Similarity=-0.047 Sum_probs=124.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC--HHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-E----GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFV 230 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~-~----~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~--~~~ 230 (857)
+...+..+...|.+++|...+....+...... . ..+..+...+...|+++.|...+...+........+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677889999999999988876542211 1 1233455556778999999999999886543322222 458
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhH---HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLML---EDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~gi~p--d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
|+.+...|...|++++|...|++.. +..+-.+ ...+|+.+...|...|++++|+..+++..... ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--------~~~ 229 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------CRI 229 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--------Hhc
Confidence 9999999999999999999999887 3211111 12688999999999999999999999876531 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGV-FWVFKQLR 341 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A-~~l~~~m~ 341 (857)
.....-..+|..+...|.+.|++++| ...++...
T Consensus 230 --~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 230 --NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp --TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00111267788899999999999999 77677654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00038 Score=61.49 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|+++... .+.+..+|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHH
Confidence 4567778888888999999999999887652 236788888999999999999999999988773 2346788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+...|...|++++|...|+++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00051 Score=64.55 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
|..+...|...|++++|...|++..+... .+..+|..+..++...|++++|...|.+.... .+.+..++..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 47788889999999999999999887653 35778899999999999999999999998873 2345678888889999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNA--MLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~--li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
..|++++|...|+...+..+.+...+.. +...+.+.|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999998754456666644 44447788999999999987654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00047 Score=64.79 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|...|.+.... .+.+..++..+...+...|++++|...|+...+..+.+...|..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34777788888899999999999888762 2335667778888888889999999998888775556778888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhh--hhHHHHHhcCCHHHHHHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYS--SMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~--~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.+.|++++|...|++..... | +...+. .....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~---------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK---------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999998888754 4 233332 23333555677777777666543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.5e-05 Score=70.16 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+-..|.+.|++++|...|+...+-.+.+..+|..+..+|.+.|++++|+..|++..+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3334444444444444444444432223344444444444444444444444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.011 Score=63.29 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=158.0
Q ss_pred HHHHHH-HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 003016 159 RVLVDR-LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG-SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (857)
Q Consensus 159 ~~l~~~-l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g-~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~ 236 (857)
...+.. +...+..++|++++..+.... +-+..+++.--..+...| .+++++.+++.++... +.+..+|+.--.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 333343 444556689999999999876 234445676666666777 5999999999998753 348889999888
Q ss_pred HHHHc-C-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 237 ILGKA-G-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK--------ELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 237 ~y~k~-g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
.+.+. + ++++++.+++.+.+. -+.|..+|+.-.-.+.+.|.++ ++++.++++.+.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------- 196 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------- 196 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-------------
Confidence 88887 7 899999999999873 3568888988776666666665 899999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH--
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQ-------WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-- 377 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-- 377 (857)
-..|...|+.......+.+. ++++++.+..+... .|+..+. |+-+-..+.+.|+-
T Consensus 197 ---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~Sa-----------W~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 197 ---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSA-----------WNYLRGFLKHFSLPLV 260 (349)
T ss_dssp ---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCCSG
T ss_pred ---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHhcCCCcc
Confidence 35688899988888887776 67888888888775 4544432 46666666665543
Q ss_pred ------------------HHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 378 ------------------NEAVAAVRNMEQRG-----VVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 378 ------------------~~A~~lf~~m~~~~-----~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
........++...+ -++....+..|+..|...|+.++|.++++.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22223333332221 134555666666777777777777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00038 Score=68.08 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=92.6
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~ 522 (857)
..|++++|.++++.+.........+++.+...|...|++++|...|++...... ..+..| ...++..+-.
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ---------KSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------HcCCcHHHHHHHHHHHH
Confidence 456666666644444332223456667777777777777777777776654210 000111 3345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMALS----GCQL--DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFTEML 591 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~----g~~p--d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~~li 591 (857)
.+...|++++|...+.+.... +-.| ....+..+-..+...|++++|...++...+. +-.. -..++..+.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 777777877777777766543 2111 1235566666677788888888888766542 1111 123356666
Q ss_pred HHHHHcCCHHHHHHHHHHhh
Q 003016 592 IQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~ 611 (857)
..+...|++++|...+++..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 77777888888888877753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.3e-05 Score=70.27 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=98.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g 446 (857)
|-.+|...|++++|...++........ +...+-.+...|.+.|++++|+..|++..+. .+-+..++..+-..|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 334556678899999999887653211 1224667888999999999999999999873 2345678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcC
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL-FEETTRAN 496 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-f~~M~~~g 496 (857)
++++|...|+...+-.+.+...|..+...|.+.|+.++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999885556789999999999999999877665 57777743
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00084 Score=69.67 Aligned_cols=199 Identities=11% Similarity=0.012 Sum_probs=137.6
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV-------LNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
++ +.++...|.+.|.+..... +-....|+.+ ...+.+.+...+++..+..-. ++
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d----------------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l 76 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD----------------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QI 76 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC----------------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 45 6899999999999998753 4467788877 344444444444444333333 33
Q ss_pred CCCHHHHHHH-HHHH---------HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHH
Q 003016 346 KPSAATYGLA-MESY---------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 346 ~pd~~t~~~l-l~~~---------~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A 415 (857)
.|+......- ...| ....+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHH
Confidence 3322110000 0000 00012456778889999999999999988755 4333556666789999999999
Q ss_pred HHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 003016 416 MLVVEKIKSLRHSKPL----EITFTGLIISSMDGGHIDDCISIFQHMKDHCE-PN--IGTVNAMLKVYSRNDMFSKAKEL 488 (857)
Q Consensus 416 ~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l 488 (857)
+..|..... .|+ ...+..+-.++...|++++|...|++...+-. |. ...+.....++.+.|+.++|..+
T Consensus 155 ~~~l~~a~~----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 155 IDQVKSAGK----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHTTGGG----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhc----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999985543 232 23577778889999999999999999987532 53 44677788889999999999999
Q ss_pred HHHHHHcC
Q 003016 489 FEETTRAN 496 (857)
Q Consensus 489 f~~M~~~g 496 (857)
|+++....
T Consensus 231 l~~a~a~~ 238 (282)
T 4f3v_A 231 LEWLQTTH 238 (282)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 99999865
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00032 Score=68.58 Aligned_cols=136 Identities=11% Similarity=-0.029 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKD------HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 506 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~------~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~ 506 (857)
.++..+-..+...|++++|...++.... .......+++.+...|...|++++|.+.|.+.......
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------- 98 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-------- 98 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------
Confidence 3444444455555555555555554443 01123456777888888999999999999887654100
Q ss_pred CCCCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 507 GAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 507 ~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
.+-.| ....+..+-..+...|++++|...+++.... +.... ..++..+...|...|++++|.+.++...+
T Consensus 99 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 99 -LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 00011 2345777778888899999999999987743 21111 23456777778999999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00078 Score=60.46 Aligned_cols=101 Identities=7% Similarity=-0.023 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+...|..+...+.+.|++++|...|++... ..+.+...+..+...|...|++++|...|+...+..+.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3456788888999999999999999999876 22346677888888899999999999999998875556788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..|.+.|++++|.+.|++.....
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00053 Score=61.14 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+.......+.+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777777777777777777652 223456667777777778888888888877776444567777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|++.....
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 888888888888888877644
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00069 Score=60.38 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~ 268 (857)
+...+..+...+...|+++.|...++.++... +.+..++..+...|...|++++|...|...... .+.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHH
Confidence 34466677777888899999999998887642 236778888888899999999999999888763 234577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh
Q 003016 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (857)
Q Consensus 269 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~ 330 (857)
.+...|...|++++|...|++..... +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD----------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC----------------ccchHHHHHHHHHHHHHhcC
Confidence 88889999999999999998887642 34667777777777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00053 Score=71.82 Aligned_cols=191 Identities=6% Similarity=0.007 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...+.+.|++++|+..|.+.... .+.+...+..+-..|.+.|++++|...++...+..+.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445667777778888888888888877662 122556677777778888888888888887776555667788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|...|++++|...|.+..... |+. ..+...+...... ..+. -+..........+......
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---------------p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---------------KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---------------HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHH
Confidence 888888888888888877643 422 1222222222211 1111 1122222333444443333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHhh
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPL-FFTEMLIQAIVQ-SNYEKAVALINAMA 611 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~-~~~~li~~~~~~-g~~~~A~~l~~~M~ 611 (857)
+-. + ..|+.++|.+.++...+. .|+.. ....+-..+.+. +.+++|.++|.+..
T Consensus 143 l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 143 LTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322 2 246667777666655442 34432 222332223333 55667777777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.016 Score=62.07 Aligned_cols=226 Identities=9% Similarity=-0.041 Sum_probs=158.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC-C-
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG-G- 446 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~-g- 446 (857)
...+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++.+++.+.. ..+-+..+|+.--..+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCC
Confidence 334445567889999999887644 4556888777788888 59999999999987 3334555666555555554 5
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS--------KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~ 518 (857)
..+++..+++.+.+..+.|...|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------p~N~SAW~ 205 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------GRNNSAWG 205 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------TTCHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------CCCHHHHH
Confidence 7899999999999877889999988777776666666 9999999999865 23777888
Q ss_pred hhHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHH
Q 003016 519 SMLEASATAHQ-------WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC--------------------HLLEHA 571 (857)
Q Consensus 519 ~ll~a~~~~g~-------~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~--------------------~~A~~~ 571 (857)
..-..+.+.+. ++++++.+.+++... +-|...++.+-..+.+.|+. .....+
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 88777777775 688888888887643 33566777666666666653 222222
Q ss_pred HHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 572 FDSLLEAG-----EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 572 ~~~m~~~g-----i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
...+...+ -.++...+..|.+.|...|+.++|.++++.+...
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222211 1356777778888888888888888888887543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00037 Score=66.90 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=98.5
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHcCCCH--
Q 003016 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGHI-- 448 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~~-- 448 (857)
...|++++|...|+.....+. .+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 356888899999988776653 356789999999999999999999999988732 2355677777777 7789998
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 449 DDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 449 ~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++|...|+......+.+...|..+...|...|++++|...|++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999988555678899999999999999999999999998854
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00067 Score=60.89 Aligned_cols=100 Identities=15% Similarity=-0.007 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+. .+.+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHH
Confidence 344566677777777888888888888776542 236677777888888888888888888877763 22356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
..+..++.+.|++++|...|++....
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77888888888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.001 Score=71.68 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
|..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.... .+
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 227 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DS 227 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 47888899999999999999999887654332 578999999999999999999999999873 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA-KELFEETTR 494 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A-~~lf~~M~~ 494 (857)
.+...+..+-.+|...|++++|...|+...+-.+.+...+..+..++.+.|+.++| ..+|..|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999885566788999999999999999998 556666643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0016 Score=58.99 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
.|......|.+.|++++|+..|++..+. .+.+..+|..+-.+|.+.|++++|...|+...+--+.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4556667777888888888888877652 23456677777778888888888888888877644566788888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 003016 478 RNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g 496 (857)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 8888888888888888744
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0013 Score=61.83 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
.+..+-..+.+.|++++|...|+.....-+.+...|..+..+|.+.|++++|+..|++..... |
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---------------P~ 102 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---------------KN 102 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------SS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------------CC
Confidence 344445555556666666666665555334455556666666666666666666666655533 4
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|..+-.+|...|++++|...|++.++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234555555555566666666666665554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00092 Score=62.83 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+.+.|++++|+..|++.... -+-+...|..+-.+|...|++++|...|+...+-.+.+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 346777888899999999999999998873 234567788888999999999999999999988555678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|++.....
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998855
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0006 Score=63.77 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...+.+.|++++|+..|+..... .+.+...+..+-.+|...|++++|...|+......+.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445777888899999999999999998762 234667788888899999999999999999887555677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|...|++++|.+.|++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999988744
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0023 Score=68.91 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------------EITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
...|..+...|.+.|++++|+..|++........++ ..++..+-.+|.+.|++++|...|+...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345788888999999999999999998873211110 4678888888889999999999999888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHH-HHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYF-EYVYKGM 540 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a-~~l~~~m 540 (857)
+.+...|..+..+|...|++++|+..|++..+.. | +...+..+..++...|+.+++ ..+|+.|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---------------PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999999999999999999888754 5 445666777777777777777 3455555
Q ss_pred H
Q 003016 541 A 541 (857)
Q Consensus 541 ~ 541 (857)
.
T Consensus 292 ~ 292 (336)
T 1p5q_A 292 F 292 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00077 Score=64.61 Aligned_cols=122 Identities=9% Similarity=0.025 Sum_probs=97.8
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH-HHHcCCh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI-LGKAGRP 244 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~-y~k~g~~ 244 (857)
...|.+++|...+....... +.+...+..+...|...|+++.|...++.+++..+ .+..++..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCc
Confidence 34566777888888776654 34677888999999999999999999999987643 367888888888 8899998
Q ss_pred --hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 245 --HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 245 --~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
++|...|+...+. .+.+...|..+...|...|++++|...|++.....
T Consensus 96 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999874 23357889999999999999999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0027 Score=57.41 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
+..+-..|.+.|++++|...|++..+.+. .+..+|..+..+|.+.|++++|+..|++..+. -+.+...|..+-.+|.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 47788899999999999999999887763 36778999999999999999999999998873 2345678899999999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
..|++++|...|+...+-.+.+...+..|-
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999874445566655543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00082 Score=62.80 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
...+..+...+.+.|++++|...|++..... | +...|..+-.+|...|++++|...|++.+...
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445555555666666666666666655533 3 44455555555566666666666666655432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
+-+...+..+-.+|...|++++|...|+...+
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11334555555556666666666666665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.003 Score=56.57 Aligned_cols=95 Identities=5% Similarity=-0.044 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
.|..+...+.+.|++++|+..|.+.... .+.+...+..+-.+|.+.|++++|...|+...+..+.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566666777777777777777776652 23345667777777777788888888777777644556777888888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003016 478 RNDMFSKAKELFEETTR 494 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~ 494 (857)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888887766
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0033 Score=54.60 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++......+.+...|..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666667777777777777776652 1234555666666677777777777777776664445677777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.|++++|.+.|++.....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888777643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0046 Score=53.68 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+...|+++.|...++..+... +.+..++..+...|.+.|++++|...|++.... .+.+...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 4566677778888899999999999887643 236788888888999999999999999988773 2235788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+..++...|++++|...|++....
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 889999999999999999988775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00037 Score=72.36 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 546 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~ 546 (857)
..+-.....+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|+.... .
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---------------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~ 164 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG---------------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---W 164 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---------------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---c
Confidence 344556777889999999999999887654 7555555555678888999999999985433 2
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 547 LDQ----TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 547 pd~----~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
|+. ..+..+-.++...|++++|+..|++.......|. ...+...-.++.+.|+.++|..+|+++..
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 3677777889999999999999999875443254 33556667778888999999999999864
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=56.82 Aligned_cols=99 Identities=12% Similarity=-0.051 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+|..+...|.+.|++++|...|++..+. .+.+...|..+...+...|++++|...|++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------- 70 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI------------- 70 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 345666666777777777777777776653 12356677777777777777777777777776642
Q ss_pred CCCCC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 003016 308 PVLEP--DLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 308 ~~~~p--d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g 344 (857)
+. +...|..+...+... |++++|.+.+....+..
T Consensus 71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 71 ---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 22 466777777777777 77777777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.05 Score=59.89 Aligned_cols=268 Identities=10% Similarity=-0.049 Sum_probs=167.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 368 VRAFWEEGKINEAVAAVRNMEQRGVVGT----------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 368 i~~y~k~g~~~~A~~lf~~m~~~~~~~d----------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
...+.+.|++++|.+.|....+...... ...+..+...|.+.|++++|.+.+.......+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999876543211 124677899999999999999999887653333333
Q ss_pred HHH----HHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 003016 432 EIT----FTGLIISSMDGGHIDDCISIFQHMKD-----HCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 501 (857)
Q Consensus 432 ~~t----~~~ll~a~~~~g~~~~A~~if~~m~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~ 501 (857)
..+ .+.+-..+...|..+.+..++..... +..+ -..++..+...|...|++++|..++.+....-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~---- 166 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK---- 166 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH----
Confidence 322 22233334457899999999988754 1222 256788899999999999999999998765420
Q ss_pred ccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 502 FLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS--GCQ-L-D--QTKHAWLLVEASRAGKCHLLEHAFDS 574 (857)
Q Consensus 502 ~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~--g~~-p-d--~~t~~~Ll~~~~~~G~~~~A~~~~~~ 574 (857)
...-+| ...+|..++..|...|+++.|..+++..... .+. | . ...+..+...+...|++++|...|..
T Consensus 167 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 167 -----KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp -----TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred -----hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 000122 2357888889999999999999999887643 222 2 1 23555666667888999999998876
Q ss_pred HHHC----CCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHhhhC--CCccCHHHHHHHHHHhhhccCHHHHHHHHHH
Q 003016 575 LLEA----GEIPHPLFFT----EMLIQAIVQSNYEKAVALINAMAYA--PFHITERQWTELFESNEDRISRDKLEKLLNA 644 (857)
Q Consensus 575 m~~~----gi~p~~~~~~----~li~~~~~~g~~~~A~~l~~~M~~~--~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~ 644 (857)
..+. +......... .++.+.......+.....+..-... ...|....+..+..++. .+++......+..
T Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 242 SFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 6542 2222221111 1122222234444444444432222 23344456666666654 3555555555544
Q ss_pred H
Q 003016 645 L 645 (857)
Q Consensus 645 m 645 (857)
.
T Consensus 321 ~ 321 (434)
T 4b4t_Q 321 Y 321 (434)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0079 Score=66.50 Aligned_cols=215 Identities=9% Similarity=-0.055 Sum_probs=143.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhh--hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMH--RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~--~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 347 (857)
...+...|++++|.+.|..+.......- +.+ ..+.......-..++..+...|...|++++|.+.+..+...- -.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQS-SAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSS-SBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccc-hhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456778999999999999876531000 000 000000000011347788999999999999999999886531 122
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ----RG-VVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~----~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
+..+.. .+.+.+-..+...|+.+.|..++..... .+ ...-..++..+...|...|++++|..++.+.
T Consensus 90 ~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 90 KSKTVK--------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHH--------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 222211 1124445555667899999999887643 22 2223557888999999999999999999987
Q ss_pred Hhc---CCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 423 KSL---RHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKD---HCEPN----IGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 423 ~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
... .+-.+. ..++..+...|...|++++|..+++.... ....+ ...+..+...+...|++++|...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 652 122222 34688899999999999999999998765 12222 35567777888889999999998887
Q ss_pred HHH
Q 003016 492 TTR 494 (857)
Q Consensus 492 M~~ 494 (857)
...
T Consensus 242 a~~ 244 (434)
T 4b4t_Q 242 SFE 244 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0014 Score=58.27 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
..+..+...+...|++++|...|.......+.+...+..+...|...|++++|...|++....... ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~ 73 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-----------NRE 73 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------STT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------cch
Confidence 345666667777888888888888777655567888899999999999999999999998775400 011
Q ss_pred C----HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 513 D----EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555 (857)
Q Consensus 513 d----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~L 555 (857)
+ ..+|..+..++...|++++|...|+...+. .|+......+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 1 556777777888888888888888888764 3455444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.003 Score=65.93 Aligned_cols=192 Identities=11% Similarity=-0.005 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+.+.|++++|...|.+..... +.+...|..+..+|.+.|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556666666667777777777777666532 23566666666667777777777777776665
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV----VGTASVYYELACCLCNNGRWQDAMLV 418 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~----~~d~~t~~~lI~~~~~~g~~~~A~~l 418 (857)
. .|+.... +..+..+|...|++++|...|++..+.+. ......+..+ ...+...
T Consensus 67 ~--~p~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~------- 124 (281)
T 2c2l_A 67 L--DGQSVKA-----------HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR------- 124 (281)
T ss_dssp S--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-------
T ss_pred h--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-------
Confidence 4 3333221 25666677777777777777766543221 1111122221 1111111
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 003016 419 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFSKAKELFEETTRA 495 (857)
Q Consensus 419 ~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~lf~~M~~~ 495 (857)
+..... .....+......+ ..+ ..|+.++|.+.++...+.-+.+......+-..+.+. +.+++|.++|.+..+.
T Consensus 125 ~~~~~~-~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 125 WNSIEE-RRIHQESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHH-TCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHH-HHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111222 2223332222222 222 257777887777766653333344445555555555 6688899999887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0022 Score=57.05 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---CCCC----HHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---CEPN----IGTVN 470 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---~~p~----~~~~~ 470 (857)
.|..+...+...|++++|...|.+.... .+.+...+..+...+...|++++|...++..... ..++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3555555666666666666666665542 1234455555666666666666666666665541 1222 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 471 AMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 471 ~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+...|.+.|++++|.+.|++.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 78888888888888888888887754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00081 Score=58.13 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC--CHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP--NIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p--~~~~~~~li~~ 475 (857)
.|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...|+...+..+. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3566667777778888888887777662 2234556677777777888888888888877764444 67788888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHcC
Q 003016 476 YSRN-DMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~-g~~~~A~~lf~~M~~~g 496 (857)
|.+. |++++|.+.|.+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.003 Score=57.21 Aligned_cols=100 Identities=7% Similarity=-0.100 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+...|..+...|.+.|+++.|...|...... .+.+...|..+..++...|++++|...|++.....
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------- 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD----------- 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------
Confidence 36677777777888888888888888877663 12356777777888888888888888888777642
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+.+...|..+..++...|++++|...|....+.
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 335667777777788888888888888777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0023 Score=58.93 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..+..+...+.+.|++++|...|++.... .+.+...+..+-.+|...|++++|...|+......+.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34666777888899999999999988762 2345667788888889999999999999998875556778888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|.+.|++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988744
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0047 Score=55.20 Aligned_cols=97 Identities=19% Similarity=0.057 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..+...-..+...|+++.|...|+..++.. +.+..+|..+..+|.+.|++++|+..|++..+. -+.+...|..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456666777888999999999999988753 237788999999999999999999999998873 23357889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
..++...|++++|...|++....
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999988763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0044 Score=56.01 Aligned_cols=101 Identities=6% Similarity=0.019 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+...|..+...+...|++++|+..|...... .+.+...+..+...+...|++++|...|+...+..+.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667888888899999999999999988762 2335677888888899999999999999988875556788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|...|++++|...|.+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999987744
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0032 Score=61.60 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 428 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d---------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~ 428 (857)
+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..++..... .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 36778888999999999999999876432211 267888999999999999999999998873 3
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 003016 429 KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETTRAN 496 (857)
Q Consensus 429 ~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~~~g 496 (857)
+.+...+..+-.+|...|++++|...|+...+..+.+...+..+..++.+.++..++. ..|..|...+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456788888999999999999999999988755567888888888888888877776 5666665444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0031 Score=57.01 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
.++..+-..+.+.|++++|...|+...+-.+.+...|+.+-.+|.+.|++++|++.|++..+.. |
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---------------~ 73 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---------------R 73 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---------------c
Confidence 3455666777788888888888888777555678889999999999999999999999887643 3
Q ss_pred CH--------hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003016 513 DE--------YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551 (857)
Q Consensus 513 d~--------~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t 551 (857)
+. .+|..+-.++...|++++|++.|++.+. ..||+.+
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 22 2455566667777778888777777665 3455543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0073 Score=55.09 Aligned_cols=100 Identities=5% Similarity=-0.008 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
.+...|..+...+...|++++|+..|++... ..|+ ...+..+...|...|++++|...++......+.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3566788888899999999999999999876 2355 56788888889999999999999999887555678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+..+|...|++++|...|++.....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0035 Score=61.32 Aligned_cols=127 Identities=8% Similarity=-0.082 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--------------H
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL--------------E 432 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd--------------~ 432 (857)
.+......|.++.|.+.++.-.... ......|..+...+.+.|++++|+..|.+......-.|+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3334444566666665554322111 112334667777888889999999998888762222221 1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
..+..+-.+|.+.|++++|...++...+..+.+...|..+..+|...|++++|.+.|++...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44555555566666666666666665553344555666666666666666666666666555
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0036 Score=59.10 Aligned_cols=99 Identities=9% Similarity=-0.013 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...|.+.|++++|+..|++.... .+-+...+..+-.+|.+.|++++|...|+...+..+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445777777788888888888888887762 223566777777888888888888888888877545567888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|.+.|++.....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888887744
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.002 Score=59.56 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC-cHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GT----ASVYYELACCLCNNGRWQDAMLVVEKIKSLR---HSKP-LEI 433 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-~d----~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~ 433 (857)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3578888999999999999999887643211 11 2468888999999999999999999876521 1111 134
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDH---CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~---~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
++..+-..+...|++++|...++..... .. .....+..+...|...|++++|.+.+++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5777888899999999999999987651 11 1145677888899999999999999998765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.056 Score=57.43 Aligned_cols=172 Identities=8% Similarity=0.032 Sum_probs=123.5
Q ss_pred HhcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCC
Q 003016 325 VPSHQWK-GVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----------INEAVAAVRNMEQRGVV 393 (857)
Q Consensus 325 ~~~g~~~-~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----------~~~A~~lf~~m~~~~~~ 393 (857)
.+.|.+. +|+.++..+... .|+..|. |+.--......+. +++++.+++.+...+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~yta-----------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATL-----------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHH-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 4556654 789999999864 5776664 4432222222222 68899999999887654
Q ss_pred CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHhhCCCCCHHHHH
Q 003016 394 GTASVYYELACCLCNNGR--WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH-IDDCISIFQHMKDHCEPNIGTVN 470 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~--~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~A~~if~~m~~~~~p~~~~~~ 470 (857)
+..+|+.-...+.+.|+ +++++.+++.+... -+-|...|+.---.+...|. .+++.+.++.+.+..+.|...|+
T Consensus 107 -ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 107 -SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp -CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred -CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 56678887777888884 89999999999983 24456667666666667787 58999999999886678899998
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc
Q 003016 471 AMLKVYSRN--------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA 527 (857)
Q Consensus 471 ~li~~~~~~--------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~ 527 (857)
.....+.+. +.++++++.+.+..... | |...|+.+-..+...
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---------------P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---------------PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHhc
Confidence 877777665 45889999999988854 6 666776554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0084 Score=56.47 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
+...|..+...|.+.|++++|++.|++..... | +...|..+..+|...|++++|+..|++.++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---------------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34556666666677777777777777766643 4 4455666666666667777777777666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
. +-+...|..+-..|...|++++|...|+...+.
T Consensus 75 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 D-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 223456666666666667777777766666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0056 Score=56.27 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
..+..+-..+.+.|++++|...|+......+.+...|..+..+|.+.|++++|+..|++..... |
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p 83 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---------------I 83 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------C
Confidence 3455666777888999999999988877555678888888888899999999999999888754 5
Q ss_pred -CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 513 -DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 513 -d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|..+..++...|++++|...|+...+
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666777788888888888888888775
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0036 Score=57.78 Aligned_cols=133 Identities=11% Similarity=-0.096 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC----HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD----EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.++..+...|...|++++|...|.+...... -.++ ..++..+...+...|++++|...+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------------HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777888888999999998888765320 0011 13677777788888999999998888765
Q ss_pred c----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 543 S----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 543 ~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
. +-.+. ...+..+...+...|++++|...++...+. +..+ ....+..+...+...|++++|...+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3 11111 335666677788889999998888876543 2111 13456666677777888888888887753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.012 Score=53.50 Aligned_cols=96 Identities=19% Similarity=0.086 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS----RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~ 265 (857)
...+..+...+...|+++.|...|+..++.. |+ ..+|..+...|...|++++|...|+..... .+.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 3444455555555555555555555554421 22 455555555666666666666666655542 122455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
.|..+..+|...|++++|...|++...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.013 Score=52.77 Aligned_cols=96 Identities=8% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CCCCC----HHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---HCEPN----IGTVNA 471 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~~p~----~~~~~~ 471 (857)
+..+...+.+.|++++|+..|.+.... .+-+...|+.+-.+|.+.|++++|...|+...+ ...++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 333444444444444444444444431 112233444444444455555555554444433 11111 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+-..|...|++++|++.|++.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6667777777777777777766533
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.21 Score=53.03 Aligned_cols=161 Identities=7% Similarity=-0.001 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH-HHH---HHHHHHhcC-------CHHHHHHHHHHHHhCcCCCCCCC
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQ-MLK---LLKGLGDKG-------SWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t-~~~---ll~a~~~~g-------~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
..++.........++|+.++..+.... |+..| |+. ++..+.... .++.++.+++.++... +.+
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~----PKn 107 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKS 107 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----CCC
Confidence 344444445555679999999999765 55554 443 343333321 2678999999988753 348
Q ss_pred HHHHHHHHHHHHHcCC--hhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCChhhhhhhhh
Q 003016 228 RFVYTKLLAILGKAGR--PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL-LKELVKLIERMRQKPSKRIKNMHRK 304 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~--~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~~l~~m~~k 304 (857)
..+|+.---.+.+.|+ +++++.+++.+.+. -+.|..+|+.-.-.+...|. ++++++.+..+...
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----------- 174 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----------- 174 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----------
Confidence 8999998888888884 79999999999984 35688999998888888888 59999999999876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHc
Q 003016 305 NWDPVLEPDLVVYNAVLNACVPS--------------HQWKGVFWVFKQLRKS 343 (857)
Q Consensus 305 ~f~~~~~pd~~t~~~li~~~~~~--------------g~~~~A~~l~~~m~~~ 343 (857)
-+-|...|+......... +.++++++.+......
T Consensus 175 -----~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 175 -----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp -----CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 356888888776665554 3467888888888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.014 Score=51.92 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=56.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHH
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN---IGTVNAMLKVYS 477 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~---~~~~~~li~~~~ 477 (857)
+...+.+.|++++|...|+.......-.+ ....+..+..++...|++++|...|+......+.+ ...+..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455566666666666666554211111 01345555566666677777777666665532233 555666777777
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 003016 478 RNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|...|++.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777644
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0075 Score=68.16 Aligned_cols=137 Identities=8% Similarity=0.003 Sum_probs=101.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc----CC-CCCC-HHHHH
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLK----SRFVYTKLLAILGKAGRPHEALRIFNLMLED----CN-LYPD-IAAYH 268 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~g-i~pd-~~t~~ 268 (857)
.+...|++++|..+++..++.......+ ...++|.|...|...|++++|..++++..+- .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999999887654433222 2478999999999999999999999886641 12 2343 56799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 269 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.|...|...|++++|..++++.... +.+++.+..+-...+.+.+-.++...+.+++|..+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i--------~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAI--------LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--------HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 233333322223445566667777889999999999999763
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0056 Score=54.73 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+..+...+.+.|++++|+..|++.... -+.+...+..+-.++...|+.++|...|+...+.-+.+...|..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455566777888888888888887762 223556677777778888888888888888777445567788888888888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 003016 479 NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g 496 (857)
.|++++|+..|++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 899999999988887643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0075 Score=53.90 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
+..+...+.+.|++++|...++.+++.. +.+...|..+-.+|.+.|++++|+..|++..+. -+.+...|..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3344556777888888888888887643 236778888888888888888888888887763 1235677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHcC
Q 003016 273 TLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+|.+.|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.015 Score=54.47 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=71.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSL--------RH--------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~--------~g--------~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
|......+.+.|++++|+..|.+.... .. .+.+...|..+-.+|.+.|++++|...++......
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555566666666666666655441 00 01223567778888888999999999998888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.+...|..+..+|...|++++|...|++.....
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999999988854
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.038 Score=49.01 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a 441 (857)
..+...+.+.|++++|...|+...+...... ...+..+..+|.+.|++++|...|+.......-.+. ...+..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3566778899999999999999887653322 146778889999999999999999998873211111 5667788889
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGT 468 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~ 468 (857)
+...|++++|...|+.+.+..+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999998743334433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.014 Score=65.64 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
|..+...|.+.|++++|+..|.+........++ ...|..+-.+|.+.|++++|...|+...+..+.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 555555666666666666666655541111110 2334444444444444444444444444432334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...|..+..+|...|++++|+..|++..+
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0085 Score=67.73 Aligned_cols=136 Identities=11% Similarity=0.044 Sum_probs=93.9
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKPSA 349 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~ 349 (857)
.+...|++++|..++++.... +.+++.+...--..+++.|..+|...|++++|..++++.+.. -+.|+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEK--------QEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHH--------HHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455789999999999887643 344444433334668999999999999999999999988642 123332
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----CC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-----GV-VG-TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-----~~-~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
... ..+++.|...|...|++++|+.++++..+- |. -| ...+.+.+-.++...+++++|..+|..+
T Consensus 390 p~~--------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 390 AQL--------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 123589999999999999999998875431 21 12 2334455556666777777777777777
Q ss_pred Hh
Q 003016 423 KS 424 (857)
Q Consensus 423 ~~ 424 (857)
++
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0032 Score=55.72 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHS-KP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK 486 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~-~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 486 (857)
.|++++|+..|++... .+. .| +...+..+-..|...|++++|...|+...+..+.+...+..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4677777777777766 220 13 34557777777888888888888888887755556788888888888888888888
Q ss_pred HHHHHHHHcC
Q 003016 487 ELFEETTRAN 496 (857)
Q Consensus 487 ~lf~~M~~~g 496 (857)
..|++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888877644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.015 Score=65.32 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++.... .+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DS 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CC
Confidence 47888899999999999999999876543322 577999999999999999999999999873 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETT 493 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~ 493 (857)
.+...+..+-.+|...|++++|...|+...+..+.+...+..+..++.+.++.++|. .++..|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999998855556778889999999999888776 4555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0047 Score=69.94 Aligned_cols=118 Identities=11% Similarity=-0.027 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG 278 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g 278 (857)
.+...|++++|.+.++.+++.. +.+..+|+.+...|.+.|++++|...|++..+. -+.+..+|..+..+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4556789999999999888753 236889999999999999999999999998873 2346788999999999999
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA--CVPSHQWKGVFWVFK 338 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~--~~~~g~~~~A~~l~~ 338 (857)
++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS----------------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987643 2233345545444 778899999998887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0046 Score=54.66 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 168 REMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~--~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.|.+++|+..|++..+.+. +-+...+..+...|...|++++|...++.+++..+ .+..++..+..+|.+.|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP----NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHcCCHH
Confidence 3556667777777666431 12334566666777777777777777777766432 25667777777777777777
Q ss_pred HHHHHHHHhHH
Q 003016 246 EALRIFNLMLE 256 (857)
Q Consensus 246 ~A~~vf~~m~~ 256 (857)
+|...|++...
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.026 Score=61.44 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQR---------------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~---------------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
..+...|.+.|++++|...|++..+. .-..+..+|+.+..+|.+.|++++|+..+++.... .+
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 67788899999999999999987651 11123567888999999999999999999999872 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 487 (857)
.+...+..+-.+|...|++++|...|+...+..+.+...+..+...+.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999987555577888888888888877777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.029 Score=63.38 Aligned_cols=118 Identities=12% Similarity=-0.072 Sum_probs=91.1
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 165 LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 165 l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
+.+.|.+++|...|++..+.. +-+..++..+..+|.+.|++++|...++.+++.. +.+..+|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH
Confidence 346788899999999888764 3457789999999999999999999999998853 33788999999999999999
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVT--LGQVGLLKELVKLIER 289 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~--~~~~g~~~~A~~l~~~ 289 (857)
++|...|++..+... .+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999887421 234455555555 8888999999999884
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.032 Score=52.18 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCc--------CCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLK--------DKR------DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~--------~~~------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.+...-..+.+.|+++.|...|...+... +.. .+.+..+|..+..+|.+.|+++.|+..|+...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34444555666677777777776665430 000 1113467888888888999999999999888773
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 258 CNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 258 ~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
-+.+...|..+..+|...|++++|...|.+....
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 2345778888888999999999999999888763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.029 Score=61.10 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCC
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK------------RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCN 259 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~------------~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~g 259 (857)
.+..+-..+.+.|+++.|...|+.+++.... ....+..+|+.+...|.+.|++++|+..+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 3555666777888888888888877651100 01124678888999999999999999999998873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003016 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (857)
Q Consensus 260 i~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~ 335 (857)
-+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+-..+...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----------------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----------------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23367889999999999999999999999988742 3366677777777776666665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.016 Score=62.33 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.+..+...|.+.|++++|...|++..... |+... +...|+.+++...+ . ...|..+-.+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 34555666666677777777777665432 22111 11222333322211 1 12567777778
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+.|++++|...++...+..+.+...|..+..+|...|++++|...|++...
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887774455778888888888888888888888888765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.065 Score=50.20 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-------------HhHhhhhHHHHHhcCCHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-------------EYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-------------~~t~~~ll~a~~~~g~~~~a 533 (857)
..+......+.+.|++++|++.|++..+.. |+ ...|..+-.++...|++++|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---------------p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eA 76 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---------------HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA 76 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHH
Confidence 345666677889999999999999988854 44 12566666666666777777
Q ss_pred HHHHHHHHHc-----CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHH
Q 003016 534 EYVYKGMALS-----GCQLDQ-TKH----AWLLVEASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 534 ~~l~~~m~~~-----g~~pd~-~t~----~~Ll~~~~~~G~~~~A~~~~~~m 575 (857)
+..+++.++. .+.|+. ..| ...-.++...|++++|...|+..
T Consensus 77 l~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666542 113432 233 44444444555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.015 Score=62.51 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-H
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV-Y 476 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~-~ 476 (857)
.|+.+..+|.+.|++++|+..|++.... .+.+...+..+-.+|...|++++|...|+...+..+.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5888999999999999999999998873 234677889999999999999999999999876333455566666555 3
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...+..+++..+|..|....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 34567788889999887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.1 Score=48.91 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC-C-----C-----HHHHHHHHHHHHhcCChHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE-P-----D-----LVVYNAVLNACVPSHQWKG 332 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~-p-----d-----~~t~~~li~~~~~~g~~~~ 332 (857)
...+......+.+.|++++|+..|++..+.. .. | + ...|+.+-.++.+.|++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---------------p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~e 75 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS---------------HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE 75 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHH
Confidence 3456667778889999999999999987743 11 0 2 3389999999999999999
Q ss_pred HHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhHH----HHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 333 VFWVFKQLRKS-----GLKPSAATYGLAMESYRRCLL----KVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 333 A~~l~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~----~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
|+..+++.++. .+.|+.... | ...-.++...|++++|+..|++..+
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A-----------~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKL-----------WISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCCCchHHH-----------HHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999874 236776543 5 6777888888999999888887643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.37 Score=55.44 Aligned_cols=161 Identities=7% Similarity=-0.027 Sum_probs=123.9
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTE-GQMLKLLKGLGDKGS----------WRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
........++|++++..+.... |+. ..|+.--.++...|+ +++++..++.+++..+ .+..+|+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p----K~y~aW~ 111 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----KSYGTWH 111 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----CCHHHHH
Confidence 3344556689999999999865 444 456554445555555 8999999999987543 4888999
Q ss_pred HHHHHHHHcC--ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 233 KLLAILGKAG--RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG-LLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 233 ~Li~~y~k~g--~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.---.+.+.| ++++|+..++++.+. -+.|..+|+.-.-.+.+.| .++++++.+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---------------- 173 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---------------- 173 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----------------
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------------
Confidence 9999999999 669999999999984 3468899999988888999 899999999999875
Q ss_pred CCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHH
Q 003016 310 LEPDLVVYNAVLNACVPS--------------HQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
-.-|..+|+.....+.+. +.++++.+.+...... .|+..
T Consensus 174 ~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~ 226 (567)
T 1dce_A 174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQ 226 (567)
T ss_dssp TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCS
T ss_pred CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCc
Confidence 355888898877776653 4568888888888765 35443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.042 Score=47.14 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+...|..+...|.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456667777777778888888877777663 2235677777777777888888888888777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.25 Score=59.38 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHcCCHHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHH
Q 003016 372 WEEGKINEAVA-AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 372 ~k~g~~~~A~~-lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 450 (857)
...+++++|.+ ++..+. +......++..+.+.|.+++|+.+.+.-.. -.......|++++
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHH
Confidence 35788888877 553222 011246777888889999998876532111 1233456788888
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 671 A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 671 ARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 88886554 467788889999999999999988888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.51 Score=54.30 Aligned_cols=171 Identities=8% Similarity=0.029 Sum_probs=133.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCCCHH
Q 003016 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----------INEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----------~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..-++|++.++.+... .|+..+. |+.--..+.+.|+ ++++...++.+.+.+.. +..
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~ta-----------W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~ 108 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATL-----------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence 3446789999999875 5666664 6665556666666 99999999999987755 566
Q ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 398 VYYELACCLCNNG--RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG-HIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 398 t~~~lI~~~~~~g--~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g-~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
+|+.-.-.+.+.| ++++++..++++.+. -.-|..+|+.---.+.+.| ..+++.+.++.+.+..+.|...|+....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 7888888888899 779999999999983 2346677777766777788 8999999999998866778999998888
Q ss_pred HHHhc--------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCC
Q 003016 475 VYSRN--------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQ 529 (857)
Q Consensus 475 ~~~~~--------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~ 529 (857)
.+.+. +.+++|++.+.+..... | |...|...-..+...+.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---------------P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---------------PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---------------SSCSHHHHHHHHHHSCCCC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---------------CCCccHHHHHHHHHhcCCC
Confidence 77763 56799999999988754 6 66778777666666665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.044 Score=47.00 Aligned_cols=64 Identities=8% Similarity=-0.002 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 432 EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
...+..+-..+...|++++|...|+...+..+.+...|..+..+|.+.|++++|++.|++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555556666666666666666665544445666777777777777777777777777653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.1 Score=42.62 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
...+..+...|.+.|++++|...|++.... .+.+...|..+...+.+.|++++|...|++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345556666666667777777766666552 1234556666666667777777777777666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.1 Score=47.59 Aligned_cols=112 Identities=7% Similarity=-0.108 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 480 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA 559 (857)
Q Consensus 480 g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~ 559 (857)
+++++|++.|++..+.| .|+.. +-..|...+.++.|.+.|++..+.| +...+..|-..|
T Consensus 9 ~d~~~A~~~~~~aa~~g--------------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--------------EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--------------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--------------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 46788888888887766 12222 4445555677888888888888765 556666777777
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCC
Q 003016 560 SR----AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 560 ~~----~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M~~~~~ 615 (857)
.. .++.++|.++|+...+.| ++..+..|-..|.. .+++++|+.+|++....|.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 76 788888888888887765 45666667777777 6788888888888766654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.15 Score=41.72 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|+..|++.... .+.+..++..+-..+...|++++|...|+......+.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666542 1223445556666666666666666666666553334455555555444
Q ss_pred Hh
Q 003016 477 SR 478 (857)
Q Consensus 477 ~~ 478 (857)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.09 Score=45.73 Aligned_cols=63 Identities=14% Similarity=-0.051 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
+...+..+...|.+.|++++|...|++.... -+.+...|..+..+|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555555544432 11224444444444555555555555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=45.07 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFN 252 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 252 (857)
+|+..|+...+.. +-+...+..+...+...|+++.|...++.+++.. +.+..+|..+...|.+.|++++|...|+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566777776654 3467788889999999999999999999998753 2367889999999999999999999999
Q ss_pred HhHH
Q 003016 253 LMLE 256 (857)
Q Consensus 253 ~m~~ 256 (857)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.58 Score=42.39 Aligned_cols=110 Identities=12% Similarity=-0.071 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCChh
Q 003016 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRPH 245 (857)
Q Consensus 170 ~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~~ 245 (857)
++++|+.+|+.-.+.| .|... +-..|...+.++.|...|....+. .+...++.|-.+|.. .++++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHH
Confidence 4678888999888888 34444 555566667888899999988765 277889999999998 89999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCC
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKP 294 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g 294 (857)
+|...|++..+. -+..++..|-..|.. .+++++|..+|++..+.|
T Consensus 79 ~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999884 578889999999988 899999999999998876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.74 E-value=1.7 Score=51.88 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=103.4
Q ss_pred HHHHHHhcCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWK-FVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~-l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
..+......+.+++|.+ ++.. .|+...+..++..+.+.|.++.|.++.+ +. ..-....
T Consensus 604 ~~~~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~------------~~---~~~f~~~ 662 (814)
T 3mkq_A 604 LEFQTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISP------------DQ---DQKFELA 662 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCC------------CH---HHHHHHH
T ss_pred HHHhHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCC------------Cc---chheehh
Confidence 34555566788888866 4421 1213344788888888999999987752 11 1113345
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~ 318 (857)
..+|+++.|+++...+ .+...|..+...+.+.|+++.|.+.|.++.. |.
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------------------~~ 711 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------------------LE 711 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------------------HH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------------------hh
Confidence 6789999999886544 4678999999999999999999999998843 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+...|...|+.+...++-+.....|- ++.-..+|.+.|++++|.+++.++
T Consensus 712 ~l~~l~~~~~~~~~~~~~~~~a~~~~~------------------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 712 SLFLLHSSFNNKEGLVTLAKDAETTGK------------------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred hhHHHHHHcCCHHHHHHHHHHHHHcCc------------------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555556776665555555544431 133444566666666666665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.19 Score=55.67 Aligned_cols=102 Identities=9% Similarity=0.056 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p 347 (857)
+..+.+.|++++|..++++..... .+++.+....-..+++.+..+|...|++++|..++++.+.. -+.|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~--------~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSN--------SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCS--------SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc--------cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 445667899999999999987642 33333333334568999999999999999999999988642 1223
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.... ..+++.|...|...|++++|+.++++..
T Consensus 366 ~Hp~~--------a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVR--------GVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 32222 1235899999999999999999988754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.3 Score=54.00 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCCCC-H
Q 003016 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK----SRFVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLYPD-I 264 (857)
Q Consensus 195 ~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~pd-~ 264 (857)
..+..+...|++++|..+++..+........+ ...+++.|...|...|++++|+.++.+...- +.-.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 44566778899999999999998654433333 2468999999999999999999999987641 122343 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
.+++.|...|...|++++|..++++...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6799999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.13 Score=57.04 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKPSA 349 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~ 349 (857)
..|++++|..++++.... +.+++.+...--..+++.+..+|...|++++|..++++.+.. | -.|+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEK--------MSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHH--------hhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 458899999999887642 233443333334578999999999999999999999998642 2 23333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.+ +++.|...|...|++++|+.++++..
T Consensus 382 a~-----------~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 382 AS-----------MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HH-----------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33 35899999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.6 Score=41.29 Aligned_cols=129 Identities=9% Similarity=0.056 Sum_probs=95.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~ 553 (857)
....+.|+++.|.++-+++ -+...|..|-......|+++-|++.|..... +.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~ 64 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FD 64 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HH
T ss_pred HHHHhcCCHHHHHHHHHHh-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HH
Confidence 4456899999999998765 3577999999999999999999999997643 45
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI 633 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g 633 (857)
.+.-.|.-.|+.+...++-+.....|- ++.....+.-.|+++++++++.+. |..|-...+ ...+|
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g 129 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANG 129 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcC
Confidence 566667788998877777666555552 566666777889999999999877 554433332 23466
Q ss_pred CHHHHHHHHHHH
Q 003016 634 SRDKLEKLLNAL 645 (857)
Q Consensus 634 ~~e~~~~l~~~m 645 (857)
.-+.+.++.+.+
T Consensus 130 ~~~~a~~~~~~~ 141 (177)
T 3mkq_B 130 DEAAASAFLEQA 141 (177)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHh
Confidence 667777776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.13 Score=43.72 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
+...+..+...+...|+++.|...|+.+++..+ .+..+|..+..+|.+.|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666667777777777777777777766432 2455777777777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.17 Score=55.96 Aligned_cols=91 Identities=4% Similarity=-0.129 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCCCC-HHHHHHHH
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLK---S-RFVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLYPD-IAAYHSVA 271 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~---~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~pd-~~t~~~li 271 (857)
..|++++|..+++..++.......+ + ..++|.|..+|...|++++|..++++..+- +.-.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999999887654332222 2 478999999999999999999999987651 122344 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHc
Q 003016 272 VTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..|...|++++|..+|++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.2 Score=42.43 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...|.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666666665532 22445666666666667777777666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.14 Score=47.89 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=81.7
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHhHHcCCCCC-CHHHHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP----------HEALRIFNLMLEDCNLYP-DIAAYHS 269 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~----------~~A~~vf~~m~~~~gi~p-d~~t~~~ 269 (857)
.+.+.+++|++.++..++..+ .+...|+.+-.++...+++ ++|+..|++..+- .| +..+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 344567888888888877533 3778888888888887765 5999999998873 35 5778999
Q ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003016 270 VAVTLGQVG-----------LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (857)
Q Consensus 270 li~~~~~~g-----------~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~ 338 (857)
+-.+|...| ++++|.+.|++... +.|+...|...+..+ +.|-+++-
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-----------------l~P~~~~y~~al~~~------~ka~el~~ 142 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----------------EQPDNTHYLKSLEMT------AKAPQLHA 142 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----------------HCTTCHHHHHHHHHH------HTHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH-----------------hCCCCHHHHHHHHHH------HhCHhccC
Confidence 999998774 89999999999987 567766666555543 33444444
Q ss_pred HHHHc
Q 003016 339 QLRKS 343 (857)
Q Consensus 339 ~m~~~ 343 (857)
.....
T Consensus 143 ~~~~~ 147 (158)
T 1zu2_A 143 EAYKQ 147 (158)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 44443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.11 Score=48.49 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=70.8
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM----------FSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
+.+.+++|...++...+--+.+...|+.+-.++...++ +++|+..|++..+.. |
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---------------P~ 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------PK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------------TT
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---------------cC
Confidence 34556777777777776555677788777777777765 469999999999854 7
Q ss_pred CHhHhhhhHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAH-----------QWEYFEYVYKGMALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g-----------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 557 (857)
+...|..+-.+|...| ++++|.+.|++.++ +.|+...|...+.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4568888999998775 78888888888776 5676665544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=93.13 E-value=1.6 Score=46.61 Aligned_cols=144 Identities=13% Similarity=-0.007 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCCh----hHHHHHHH
Q 003016 186 LMFTEGQMLKLLKGLGD--KG---SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRP----HEALRIFN 252 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~~~--~g---~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~----~~A~~vf~ 252 (857)
.+.+...|...+++... .+ +..+|+.+|+++++..+ .....|..+.-+|.- .+.. ......+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP----~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP----EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 35566677777766443 23 45889999999987532 245555544444431 1111 11111222
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHH
Q 003016 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG 332 (857)
Q Consensus 253 ~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~ 332 (857)
........+.+...|.++...+...|++++|...++++.. ..|+...|..+-..+.-.|++++
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-----------------Ln~s~~a~~llG~~~~~~G~~~e 328 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-----------------LEMSWLNYVLLGKVYEMKGMNRE 328 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----------------cCCCHHHHHHHHHHHHHCCCHHH
Confidence 2111112256788898888888888999999999999987 45788888778888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 003016 333 VFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 333 A~~l~~~m~~~g~~pd~~t~ 352 (857)
|.+.|.+.... .|...||
T Consensus 329 A~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 329 AADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp HHHHHHHHHHH--SCSHHHH
T ss_pred HHHHHHHHHhc--CCCcChH
Confidence 99999999876 5666676
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.95 E-value=6.3 Score=35.30 Aligned_cols=131 Identities=8% Similarity=0.059 Sum_probs=92.5
Q ss_pred hhhhHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-------------
Q 003016 517 YSSMLEA--SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GE------------- 580 (857)
Q Consensus 517 ~~~ll~a--~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi------------- 580 (857)
...|+.| ....|..+++.++..+.... .+..-||.+|.-....-+-+-..++++.+-.. .+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 3344444 33458999999999888764 35556666665555555545555555544321 11
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 581 ---IPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 581 ---~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+......-++.+..+|+-+.-.++++.+.. ...|++..+-.+-.|+.+.|+...+.+++.+..+.|+.
T Consensus 85 ~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 11345566678888889999998888888533 56788899999999999999999999999999999987
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=91.20 E-value=4.1 Score=43.49 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
.++..++...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 566666666789999999998888876 66767777777888888999888888877662 45555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.91 Score=37.66 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIG-TVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.+.|++++|...|+...+..+.+.. .|..+..+|...|++++|.+.|++.....
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444556666666666666553334455 66666666777777777777777766644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.24 E-value=9.8 Score=34.07 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|.+++..++..+.... .+..-||-+|.-....-+-+-.+++++.+-+. -| ...||++.....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHHHH
Confidence 46677777777776553 23344666666666666666666666655431 11 134666666666
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
.+-.+. .+....+.-++.+...|.-++-.++..++... .+|+......+-.||.+.|+..++
T Consensus 83 C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--------------~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 83 CGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN--------------NEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----------------CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--------------CCCChHHHHHHHHHHHHhcchhhH
Confidence 666554 36667777888888888888888888886442 457777777888888888888888
Q ss_pred HHHHHHHHHcCCC
Q 003016 534 EYVYKGMALSGCQ 546 (857)
Q Consensus 534 ~~l~~~m~~~g~~ 546 (857)
.+++.+.-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 8888888887763
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.48 E-value=14 Score=34.78 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=26.7
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
..+|+++.|.++-+.+ -+...|..|.....+.|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456666666665444 24556666666666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.01 E-value=2.4 Score=35.35 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHcCCC---HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 431 LEITFTGLIISSMDGGH---IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~---~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
|...+..+-.++...+. .++|..+|++....-+.++.....+-..+.+.|++++|+..|+++....
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444444433322 6888888888887556678888888888999999999999999998855
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.35 E-value=3.6 Score=33.78 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
...+...|+++.|...++.+++.. +.+.. .|..+-..|.+.|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445667788888888888887642 23666 7888888888888888888888888763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.05 E-value=3.5 Score=37.95 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003016 530 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG---KCHLLEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G---~~~~A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~g~~~~A~ 604 (857)
...+.+-|.+....|. ++..+...+-.++.+.. +++++..+|+...+.. .| +...+..|--++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666666554 67777777777888888 6679999999888764 24 3455666777889999999999
Q ss_pred HHHHHhhhCCCccC
Q 003016 605 ALINAMAYAPFHIT 618 (857)
Q Consensus 605 ~l~~~M~~~~~~p~ 618 (857)
+.++.+.+ ++|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 99999763 3453
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=20 Score=39.46 Aligned_cols=190 Identities=9% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHcCCC
Q 003016 375 GKINEAVAAVRNMEQ-----RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMDGGH 447 (857)
Q Consensus 375 g~~~~A~~lf~~m~~-----~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~~g~ 447 (857)
|++++|.+.+-.+.+ .+..........++..|...|+++...+.+.-+....|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777776655543 345666777888999999999999998888777765555544433 1222222222332
Q ss_pred HHH--HHHHHHHHhh---C-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----
Q 003016 448 IDD--CISIFQHMKD---H-CEP---NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD----- 513 (857)
Q Consensus 448 ~~~--A~~if~~m~~---~-~~p---~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd----- 513 (857)
.+. -..+.+.... + +-. .......|...|-..|++.+|.+++.++...- ...+
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-------------~~~~~~~~k 176 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-------------YGSMEMSEK 176 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------CSSSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-------------HhcccHHHH
Confidence 222 2222222211 1 111 22344678888999999999999999987542 1121
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMAL----SGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~----~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
...|...+..|...+++..|..++..+.. ....|+. ..|...+..+.+.+++.+|.+.|.++.+
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23566677788889999999999988643 1222222 3556666667889999999888877654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.63 E-value=10 Score=31.38 Aligned_cols=66 Identities=15% Similarity=0.019 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 188 FTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~---~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.|...+..+..++...++ .++|..+++..++.. +.++.....+-..+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666666666654443 688888888887753 337778888888888889999999999888874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.02 E-value=5.5 Score=36.60 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 447 HIDDCISIFQHMKDHCEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+++++..+|+...+...| +...+-.|--+|.+.|++++|.+.|+...+
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333444444444442112 123333344445555555555555555555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=80.88 E-value=5.9 Score=40.66 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHhHHcCCCCC--CHHHHHHHHHHHHhc
Q 003016 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA-----GRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQV 277 (857)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~-----g~~~~A~~vf~~m~~~~gi~p--d~~t~~~li~~~~~~ 277 (857)
....|+.+++++++..+. ..+-..|..|...|.+. |+.+.|.+.|++..+- .| +..++......+++.
T Consensus 178 ~l~~A~a~lerAleLDP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHh
Confidence 357788888888775321 11457899999999994 9999999999999873 47 388899999999885
Q ss_pred -CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC--CCHHHHHHHH
Q 003016 278 -GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE--PDLVVYNAVL 321 (857)
Q Consensus 278 -g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~--pd~~t~~~li 321 (857)
|+.+++.+.+++....+ .. |+....|.+-
T Consensus 253 ~gd~~~a~~~L~kAL~a~---------------p~~~P~~~lan~~~ 284 (301)
T 3u64_A 253 LNNRAGFDEALDRALAID---------------PESVPHNKLLVILS 284 (301)
T ss_dssp TTCHHHHHHHHHHHHHCC---------------GGGCSSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC---------------CCCCCChhHHHHHH
Confidence 99999999999999887 55 7766666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=80.72 E-value=5.8 Score=33.50 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR---DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
.+...+..+-..+-..|++..|...++.+.+..... ......++..|..+|.+.|+++.|...+++...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 455666777888888889999988888877643211 233567888999999999999999999998876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 857 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.79 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.77 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.25 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.39 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.22 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.83 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.19 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.79 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.64 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 95.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.72 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 94.63 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 94.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 88.88 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 87.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 81.13 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3e-15 Score=161.84 Aligned_cols=379 Identities=13% Similarity=0.080 Sum_probs=260.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
...+-+.|+++.|.+.++.+++.. +.+..++..+...|.+.|++++|...|++..+. -+-+..+|..+...|.+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhh
Confidence 344556788888888888877642 236677777888888888888888888887663 12346778888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++++|...+....... ..+...+..........+....+..................
T Consensus 80 ~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 138 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLK----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR----- 138 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH-----
T ss_pred hccccccccccccccccc----------------ccccccccccccccccccccccccccccccccccccccccc-----
Confidence 888888888888777653 34444555555555555666666655555555444333332
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
......+...+....+...+........ -+...+..+...+...|++++|...+.+..... +-+..++.
T Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 207 (388)
T d1w3ba_ 139 --------SDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYI 207 (388)
T ss_dssp --------HHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred --------ccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHH
Confidence 3455556666777777777766655442 244566777777788888888888887776521 22345677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHh
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEY 515 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~ 515 (857)
.+...+...|++++|...+.........+...+..+...|.+.|++++|...|++..+.. | +..
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~ 272 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---------------PHFPD 272 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---------------SSCHH
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHH
Confidence 777778888888888888887776555667777778888888888888888888877643 5 345
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQA 594 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~ 594 (857)
+|..+...+...|++++|...++..... .+.+...+..+...+...|++++|...|++..+. .| +..+|..+...+
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 6777777888888888888888777654 3445667777777788888888888888877653 34 456777777777
Q ss_pred HHcCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHhhhcc
Q 003016 595 IVQSNYEKAVALINAMAYAPFHIT-ERQWTELFESNEDRI 633 (857)
Q Consensus 595 ~~~g~~~~A~~l~~~M~~~~~~p~-~~~~~~Ll~a~~~~g 633 (857)
...|++++|+..|++... +.|+ ...|..+-..+...|
T Consensus 350 ~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 350 QQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 788888888888887653 4454 345666655555444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.5e-15 Score=158.61 Aligned_cols=380 Identities=13% Similarity=0.048 Sum_probs=304.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
..+-+.|.+++|...+.++.+.. +-+...+..+...|...|++++|...++.+++..+ .+..+|..+...|.+.|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHhhhhc
Confidence 34457799999999999998764 23567888888999999999999999999987532 37789999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
++++|...|...... ...+...+..........+....+.......... ...+.........
T Consensus 82 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 143 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------NPDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------CTTCTHHHHHHHH
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccc----------------ccccccccccccc
Confidence 999999999999884 2345666666666666666666666666655544 3444555566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 402 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l 402 (857)
.....+....+...+....... |+.... +..+...+...|+.++|...++...+.+. -+...|..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 209 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ--PNFAVA-----------WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINL 209 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC--TTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccccchhhhhHHHHHHhhccC--cchhHH-----------HHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 7778888888888888877653 443322 37788899999999999999998877653 256678899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~ 482 (857)
...+...|++++|+..|...... ...+...+..+...+.+.|++++|...|+...+..+.+..+|..+...|...|++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred hhhhhccccHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998873 2345667788888999999999999999998875566788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASR 561 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~ 561 (857)
++|.+.|+...... ..+...+..+...+...|++++|...|++.++ +.|+ ..++..+...|..
T Consensus 288 ~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~ 351 (388)
T d1w3ba_ 288 AEAEDCYNTALRLC--------------PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccC--------------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 99999999988754 34667788888899999999999999999876 4454 5678888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 003016 562 AGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~ 599 (857)
.|++++|...|++..+. .| +...|..+...|.+.|+
T Consensus 352 ~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 352 QGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999998864 45 46788888888877664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.5e-09 Score=114.14 Aligned_cols=230 Identities=12% Similarity=-0.001 Sum_probs=171.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003016 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348 (857)
Q Consensus 269 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 348 (857)
-....+.+.|++++|...|+++.+.. +-+..+|..+..+|...|++++|...|.+..+. .|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~----------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 85 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD----------------PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPD 85 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccc
Confidence 34556789999999999999998753 346889999999999999999999999999875 454
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--------------CHHHHHHHHHHHHHCCCHHH
Q 003016 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--------------TASVYYELACCLCNNGRWQD 414 (857)
Q Consensus 349 ~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~--------------d~~t~~~lI~~~~~~g~~~~ 414 (857)
.... |..+...|...|++++|.+.++......... +.......+..+...+.+.+
T Consensus 86 ~~~~-----------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 86 NQTA-----------LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp CHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred cccc-----------cccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence 4332 4788899999999999999999886543210 00011112233445566777
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 415 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 415 A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
|...|.+........++..++..+...+...|++++|...|+......+.+...|..+...|.+.|++++|.+.|++..+
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 88888776654444455667777778888888888888888887764455678888888888888888888888888877
Q ss_pred cCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 495 ANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 495 ~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.. | +..+|..+..+|...|++++|...|++.++
T Consensus 235 ~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 235 LQ---------------PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hh---------------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43 5 345677777888888888888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.8e-09 Score=110.18 Aligned_cols=236 Identities=10% Similarity=0.037 Sum_probs=146.2
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
|.+.|++++|...|+++.+. -+-+..+|..+..+|...|++++|...|.+..... +-+...|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----------------p~~~~~~ 90 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK----------------PDNQTAL 90 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc----------------ccccccc
Confidence 44455555555555555442 11234455555555555555555555555544321 1234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H---HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME-S---YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV- 392 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-~---~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~- 392 (857)
..+...|...|++++|.+.+....... |+......... . .........+..+.+.+...+|...|.+....+.
T Consensus 91 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 91 MALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555555544321 11100000000 0 0000001223334455677888888888765543
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
..+..+|..+...+...|++++|+..|++.... .+-+..++..+-..|.+.|++++|.+.|+...+--+-+..+|..+
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 246 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 246 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHH
Confidence 346778889999999999999999999998762 223466788889999999999999999999887444568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 003016 473 LKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
..+|.+.|++++|++.|++..+.
T Consensus 247 g~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 247 GISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=1.2e-06 Score=91.16 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003016 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408 (857)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~ 408 (857)
..++|..+|++..+.....+... |...+..+.+.|+.+.|..+|+.+..........+|...+..+.+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l------------~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLL------------YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHH------------HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45778888888876543333333 477788888999999999999998876554445678888999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLII-SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 487 (857)
.|..+.|..+|..........+ ..|..... -+...|+.+.|..+|+.+....+.+...|...++.+.+.|+.+.|..
T Consensus 147 ~~~~~~ar~i~~~al~~~~~~~--~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~ 224 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999876222222 23322222 23446888999999999888666778889999999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCCC--HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 488 LFEETTRANSSGYTFLSGDGAPLKPD--EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 488 lf~~M~~~g~~~~~~~~~~~~~~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+|++..... +..|+ ...|...+.--...|+.+.+..+++++.+
T Consensus 225 ~fe~ai~~~------------~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 225 LFERVLTSG------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHSS------------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC------------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999877654 12332 34677777766677888888888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=1.4e-05 Score=82.98 Aligned_cols=275 Identities=12% Similarity=-0.006 Sum_probs=192.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
....+...|++++|.+++++..... ...+ ...++.+...|...|++++|...|++..+...
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~---------------~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~ 82 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL---------------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 82 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC---------------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---------------cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3456778999999999999987653 1111 34677788889999999999999998865321
Q ss_pred -CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh----cCC--CC-CHHHHHHHHHHHHHCCCHHHHHH
Q 003016 346 -KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ----RGV--VG-TASVYYELACCLCNNGRWQDAML 417 (857)
Q Consensus 346 -~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~----~~~--~~-d~~t~~~lI~~~~~~g~~~~A~~ 417 (857)
.++.... ...+..+...|...|++..|...+..... ... .+ ....+..+...+...|+++.|..
T Consensus 83 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~ 154 (366)
T d1hz4a_ 83 QHDVWHYA--------LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 154 (366)
T ss_dssp HTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH
Confidence 1222221 11236778889999999999999887543 111 11 12345667788899999999999
Q ss_pred HHHHHHhcC---CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 003016 418 VVEKIKSLR---HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---HCEP----NIGTVNAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 418 l~~~m~~~~---g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~ 487 (857)
.+....... +......++..+...+...+....+...+..... .... ....+..+...+...|++++|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (366)
T d1hz4a_ 155 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234 (366)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHH
Confidence 998877622 2222344566666778888999999988877654 1111 13456667778889999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHHc
Q 003016 488 LFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL----SGCQLDQ-TKHAWLLVEASRA 562 (857)
Q Consensus 488 lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~----~g~~pd~-~t~~~Ll~~~~~~ 562 (857)
.+.+...... .........+..+..++...|++++|...++.... .+..|+. ..+..+-..|.+.
T Consensus 235 ~~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 235 WLRHTAKPEF----------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HHHHSCCCCC----------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----------ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 9988655330 00112334556677788899999999999988764 3555543 3666777778999
Q ss_pred CCHHHHHHHHHHHHH
Q 003016 563 GKCHLLEHAFDSLLE 577 (857)
Q Consensus 563 G~~~~A~~~~~~m~~ 577 (857)
|++++|.+.++...+
T Consensus 305 g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALK 319 (366)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.8e-06 Score=89.64 Aligned_cols=189 Identities=11% Similarity=0.013 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (857)
+..++|..+|++..+.. .+.+...|...+......|+++.|..+|+.+.+........+
T Consensus 78 ~~~~~a~~i~~ral~~~---------------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~------ 136 (308)
T d2onda1 78 LFSDEAANIYERAISTL---------------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV------ 136 (308)
T ss_dssp HHHHHHHHHHHHHHTTT---------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHH------
T ss_pred cchHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHH------
Confidence 34578888999888653 455777888888999999999999999999987533322333
Q ss_pred HHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 358 SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC-LCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 358 ~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~-~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
|...+..+.+.|+.+.|..+|+.....+..... .|...... +...|+.+.|..+|+.+... .+.+...+.
T Consensus 137 ------w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~-~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~ 207 (308)
T d2onda1 137 ------YIQYMKFARRAEGIKSGRMIFKKAREDARTRHH-VYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVL 207 (308)
T ss_dssp ------HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-HHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred ------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHH
Confidence 488889999999999999999999877654333 34333332 34568999999999999872 444567889
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH--CEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~--~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..++.+.+.|+++.|+.+|++..+. ..| ....|...+..-.+.|+.+.+.++++++.+.-
T Consensus 208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998774 333 35689999998899999999999999987744
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=9e-06 Score=84.41 Aligned_cols=282 Identities=9% Similarity=-0.029 Sum_probs=193.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC----HHHHHHHH
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----IAAYHSVA 271 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----~~t~~~li 271 (857)
...+...|+++.|.++++..+...+....+ ...+++.+...|...|++++|...|++..+...-.++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344677899999999999988754332111 1356778888999999999999999987652111122 34567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (857)
..+...|++..+...+....... ..............+..+...+...|+++.+...+..............
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLI--------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--------HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 88899999999999988765421 1111111111233555667778899999999999998876543322221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----GVVG--TASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 352 ~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~~~--d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.. ..+..+...+...+....+...+.+.... +..+ ....+..+...+...|+++.|...+......
T Consensus 171 ~~--------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 242 (366)
T d1hz4a_ 171 QL--------QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242 (366)
T ss_dssp GH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HH--------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 10 11256667788889999998888765432 2111 1234666677888999999999998876542
Q ss_pred CCC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 426 RHS--KPLEITFTGLIISSMDGGHIDDCISIFQHMKD-----HCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 426 ~g~--~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
... ......+..+...+...|++++|...++.... +..| ....+..+...|.+.|++++|.+.|++...
T Consensus 243 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 243 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 12234566778889999999999999998764 2223 245778888999999999999999998765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5.4e-06 Score=86.30 Aligned_cols=213 Identities=7% Similarity=-0.028 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR-WQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
++.+-..+.+.+..++|+.+++++.+.+.. +...|+....++...|+ +++|+..++..... -+-+..+|..+-..+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 366777788889999999999999887643 56678888888888775 89999999988762 234567788888888
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhH
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSML 521 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll 521 (857)
.+.|++++|...|..+.+.-+.+...|+.+...+.+.|++++|++.|+++.+.. | +...|+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---------------p~n~~a~~~r~ 187 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------------VRNNSVWNQRY 187 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---------------TTCHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---------------CccHHHHHHHH
Confidence 899999999999999988666789999999999999999999999999998855 6 556777666
Q ss_pred HHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 003016 522 EASATAHQ------WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE-IPHPLFFTEMLIQA 594 (857)
Q Consensus 522 ~a~~~~g~------~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi-~p~~~~~~~li~~~ 594 (857)
..+...+. +++|...+...++.. +-+...|+.+...+.. ...+++...++...+... ..+...+..+...|
T Consensus 188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 188 FVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 66555544 677888888777643 2345666666554444 345777777777665422 22455555666555
Q ss_pred HH
Q 003016 595 IV 596 (857)
Q Consensus 595 ~~ 596 (857)
..
T Consensus 266 ~~ 267 (315)
T d2h6fa1 266 ED 267 (315)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.1e-05 Score=83.96 Aligned_cols=215 Identities=8% Similarity=-0.038 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCC
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG-KINEAVAAVRNMEQRGV 392 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g-~~~~A~~lf~~m~~~~~ 392 (857)
...|+.+-..+.+.+.+++|+++++.+++. .|+..+. |+.....+...| ++++|...++...+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a-----------~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTV-----------WHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHH-----------HHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 456777777788899999999999999985 6777765 688888888876 59999999999887764
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
. +..+|+.+...+.+.|++++|+..|.++.+. -+-+...|..+...+.+.|++++|...|+.+.+--+.+...|+.+
T Consensus 110 ~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r 186 (315)
T d2h6fa1 110 K-NYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 186 (315)
T ss_dssp T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred h-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHH
Confidence 4 5677999999999999999999999999872 344578899999999999999999999999998556678889888
Q ss_pred HHHHHhcCC------HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 473 LKVYSRNDM------FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 473 i~~~~~~g~------~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
...+.+.+. +++|++.+.+..... | +...|+.+...+.. ...+++.+.+....+...
T Consensus 187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~---------------P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 187 YFVISNTTGYNDRAVLEREVQYTLEMIKLV---------------PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred HHHHHHccccchhhhhHHhHHHHHHHHHhC---------------CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCC
Confidence 777776655 678999999988855 6 56667766555544 445777788877766433
Q ss_pred CC-CHHHHHHHHHHHH
Q 003016 546 QL-DQTKHAWLLVEAS 560 (857)
Q Consensus 546 ~p-d~~t~~~Ll~~~~ 560 (857)
.+ +...+..+...|.
T Consensus 251 ~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 251 SHSSPYLIAFLVDIYE 266 (315)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 22 3455566666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=2.4e-06 Score=85.64 Aligned_cols=97 Identities=9% Similarity=-0.120 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
.+|..+-..|.+.|++++|...|++..+. -+-++.+|+.+..+|.+.|++++|+..|++..+..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 101 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------- 101 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--------------
Confidence 34444555555556666666665555542 11235555555555555555555555555555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+-+..+|..+..++...|++++|...|+...+.
T Consensus 102 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 102 --PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp --TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 123444555555555555555555555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.26 E-value=4.1e-06 Score=87.84 Aligned_cols=158 Identities=10% Similarity=0.013 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH-HHHHHHHHH----------HHhcCCHHHHHHHHHHHHcCCChhhh
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-AAYHSVAVT----------LGQVGLLKELVKLIERMRQKPSKRIK 299 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~-~t~~~li~~----------~~~~g~~~~A~~l~~~m~~~g~~~l~ 299 (857)
.+.++....+....++|+.+++...+. .|+. ..|+..-.. +...|.+++|+.+++...+.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------ 102 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------ 102 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------
Confidence 344444444445568899999888763 3654 345443222 22334578899999988765
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH
Q 003016 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSH--QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI 377 (857)
Q Consensus 300 ~m~~k~f~~~~~pd~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~ 377 (857)
.+.+...|..+..++...+ ++++|...+..+.+... ++...+ +..+...+...+..
T Consensus 103 ----------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~-----------~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 103 ----------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCW-----------DYRRFVAAQAAVAP 160 (334)
T ss_dssp ----------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHH-----------HHHHHHHHHTCCCH
T ss_pred ----------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhh-----------hhHHHHHHHhcccc
Confidence 3557778888777776655 57899999999887632 233332 13344666778999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003016 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 420 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~ 420 (857)
++|...++...+.+. -+...|+.+...+.+.|++++|...+.
T Consensus 161 ~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 161 AEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999998887765 367778888888888888877755443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=3.2e-05 Score=77.05 Aligned_cols=151 Identities=14% Similarity=-0.074 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 171 TAKNWKFVRIMNQSGL-MFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 171 ~~~A~~l~~~M~~~g~-~p~--~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.+.++.-+.+...... .+. ..+|..+-..|.+.|+++.|...|+..++..+ .+..+|+.+-.+|.+.|++++|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p----~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC----CCHHHHhhhchHHHHHHHHHHh
Confidence 4566666777765422 221 12566667788899999999999999987633 3788999999999999999999
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 248 ~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
+..|++..+. -+-+..+|..+..+|...|++++|...|+...+.. +.+......+..++.+.
T Consensus 91 ~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~~~~~~~~~ 152 (259)
T d1xnfa_ 91 YEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----------------PNDPFRSLWLYLAEQKL 152 (259)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc----------------cccHHHHHHHHHHHHHh
Confidence 9999999873 12346789999999999999999999999987753 33454444444445555
Q ss_pred CChHHHHHHHHHHHHc
Q 003016 328 HQWKGVFWVFKQLRKS 343 (857)
Q Consensus 328 g~~~~A~~l~~~m~~~ 343 (857)
+..+....+.......
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 153 DEKQAKEVLKQHFEKS 168 (259)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHhhcc
Confidence 5555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=2.1e-06 Score=90.11 Aligned_cols=217 Identities=8% Similarity=-0.085 Sum_probs=110.3
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHH
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG--LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~ 319 (857)
|++++|+.+|+...+. -+.+...|..+..++...+ ++++|...+.++.... +++...|..
T Consensus 87 ~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----------------~~~~~~~~~ 148 (334)
T d1dcea1 87 ALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD----------------ERNFHCWDY 148 (334)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC----------------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC----------------chhhhhhhh
Confidence 3345555555555442 1234445555554444443 2455555555554431 233444333
Q ss_pred HH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 320 VL-NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 320 li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.+ ..+...+.++.|+..++.+.+.. |+.... |+.+...|.+.|+.++|...+....... |.
T Consensus 149 ~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a-----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--- 210 (334)
T d1dcea1 149 RRFVAAQAAVAPAEELAFTDSLITRN--FSNYSS-----------WHYRSCLLPQLHPQPDSGPQGRLPENVL--LK--- 210 (334)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHH-----------HHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---
T ss_pred HHHHHHHhccccHHHHHHHHHHHHcC--CCCHHH-----------HHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---
Confidence 22 33444555555555555554432 222221 3455555555555554433332221110 00
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
...+...+...+..+++...+..... ..+++...+..+...+...|+.++|...+.......+.+...|..+...|.+
T Consensus 211 ~~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 288 (334)
T d1dcea1 211 ELELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 288 (334)
T ss_dssp HHHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 11122333444555556666655554 1223333444555555666777777777776665333345667777778888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 003016 479 NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g 496 (857)
.|+.++|.+.|++..+..
T Consensus 289 ~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 289 LLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp GGGHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 888888888888887744
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=0.00059 Score=69.25 Aligned_cols=212 Identities=9% Similarity=-0.049 Sum_probs=137.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLED---CNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
|......|...|++++|...|.+..+- .+-.+ -..+|+.+..+|.+.|++++|.+.+++..... ...
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~--------~~~- 110 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--------THR- 110 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHT-
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh--------hhc-
Confidence 344456788889999999999887551 11112 14688999999999999999999998765421 000
Q ss_pred CCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACV-PSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~-~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
........++..+...|- ..|++++|.+.+.+..+.- ...+.... ..++..+...|.+.|++++|...|
T Consensus 111 -~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~--------~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 111 -GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS--------NKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh--------hhHHHHHHHHHHHcChHHHHHHHH
Confidence 001122455666666664 4699999999999876421 01122111 122478899999999999999999
Q ss_pred HHHhhcCCCCC-----H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHc--CCCHHHHHH
Q 003016 385 RNMEQRGVVGT-----A-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL---EITFTGLIISSMD--GGHIDDCIS 453 (857)
Q Consensus 385 ~~m~~~~~~~d-----~-~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd---~~t~~~ll~a~~~--~g~~~~A~~ 453 (857)
++......... . ..|..++.++...|+++.|...|++......-.++ ......++.++-. .+.+++|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99776432211 1 22445566777899999999999988652111122 2345667777765 356788888
Q ss_pred HHHHHhh
Q 003016 454 IFQHMKD 460 (857)
Q Consensus 454 if~~m~~ 460 (857)
.|+.+.+
T Consensus 262 ~y~~~~~ 268 (290)
T d1qqea_ 262 EFDNFMR 268 (290)
T ss_dssp HHTTSSC
T ss_pred HHHHHhh
Confidence 8876654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=0.00038 Score=70.69 Aligned_cols=171 Identities=9% Similarity=-0.037 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC-CcHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQR----GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSK-PLEIT 434 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~---~g~~-pd~~t 434 (857)
|.-..+.|...|++++|...|.+..+- +- .....+|+.+..+|.+.|++++|+..+++.... .+.. ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 466778899999999999999987542 11 122457899999999999999999999875541 1111 11344
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHhhC---C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 003016 435 FTGLIISSM-DGGHIDDCISIFQHMKDH---C--EP-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507 (857)
Q Consensus 435 ~~~ll~a~~-~~g~~~~A~~if~~m~~~---~--~p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~ 507 (857)
+..+...|- ..|++++|...+....+- . .+ -..++..+...|.+.|++++|++.|++....... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~--------~ 191 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG--------N 191 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS--------C
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc--------c
Confidence 666666664 579999999999887641 1 11 1356788899999999999999999998875400 0
Q ss_pred CCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 508 APLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 508 ~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
........ .|...+..+...|+++.|...+....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00011111 122333345556777777777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00067 Score=64.26 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=92.6
Q ss_pred HHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH
Q 003016 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314 (857)
Q Consensus 235 i~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~ 314 (857)
-..+...|+++.|++.|.++.. |+..+|..+..+|...|++++|++.|++..+.. +-+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld----------------p~~~ 70 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------KHLA 70 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh----------------hhhh
Confidence 3455677888888888877643 777888888888888888888888888887753 4467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL---AMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
..|..+-.+|.+.|++++|...|+.............|.. ........++..+-.+|.+.|++++|.+.|....+..
T Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7888888888888888888888888765311100000000 0000000112456667888888888888888777655
Q ss_pred CCC
Q 003016 392 VVG 394 (857)
Q Consensus 392 ~~~ 394 (857)
..+
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0014 Score=61.87 Aligned_cols=136 Identities=9% Similarity=0.001 Sum_probs=92.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~ 482 (857)
...+...|+++.|++.|.++ ..|+..++..+-..|...|++++|...|++..+--+.+...|+.+-.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 44467788888888888654 2366677778888888888888888888888875556788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCC--CCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 483 SKAKELFEETTRANSSGYTFLSG--DGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~--~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
++|++.|++....... ...... ......++ ..++..+-.++...|++++|.+.+....+..
T Consensus 87 ~~A~~~~~kAl~~~~~-n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcc-CchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999987653200 000000 00001111 1334455566777788888887777766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.41 E-value=0.078 Score=53.89 Aligned_cols=137 Identities=8% Similarity=0.001 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
.||..-...+...|.+.|.++.|..+|..+- -|..++..|.+.++++.|.+++.+. -+..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~ 71 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRT 71 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHH
Confidence 3566666667777777777777777776541 1666777777777777777666543 35567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|..+...+.+.....-| .+...+ ...+......++..|-..|.+++...+++..... -.
T Consensus 72 ~k~~~~~l~~~~e~~la-----~i~~~~---------------~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~ 130 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLA-----QMCGLH---------------IVVHADELEELINYYQDRGYFEELITMLEAALGL-ER 130 (336)
T ss_dssp HHHHHHHHHHTTCHHHH-----HHTTTT---------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TT
T ss_pred HHHHHHHHHhCcHHHHH-----HHHHHH---------------hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-Cc
Confidence 77777777766655433 121221 3334444556777777777777777777765432 13
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEG 375 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g 375 (857)
++...+ +-|+..|++.+
T Consensus 131 ~~~~~~------------~~L~~lyak~~ 147 (336)
T d1b89a_ 131 AHMGMF------------TELAILYSKFK 147 (336)
T ss_dssp CCHHHH------------HHHHHHHHTTC
T ss_pred cchHHH------------HHHHHHHHHhC
Confidence 344444 66666777653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.001 Score=62.78 Aligned_cols=99 Identities=6% Similarity=0.024 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
|++..+......|.+.|++++|+..|.+.... .+.+...|+.+-.+|.+.|++++|...|+...+-.+-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 45555666677888889999999999887762 2345667888888889999999999999888774455688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003016 474 KVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+|.+.|++++|+..|++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998776
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.0024 Score=54.81 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=76.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
-..+...|++++|...|..+++.. +.+...|+.+-.+|.+.|++++|+..|....+. -+.+...|..+..++..
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----CcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHH
Confidence 455777899999999999988753 337888999999999999999999999988873 24578889999999999
Q ss_pred cCCHHHHHHHHHHHHcC
Q 003016 277 VGLLKELVKLIERMRQK 293 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~ 293 (857)
.|++++|+..|++..+.
T Consensus 84 ~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 99999999999998874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.0014 Score=56.33 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=56.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
..+.+.|++++|+..|.+.... .+-+...|..+-.+|.+.|++++|...+....+-.+.+...|..+..+|...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3455566666666666665541 23344456666666666666666666666666544556667777777777777777
Q ss_pred HHHHHHHHHHH
Q 003016 484 KAKELFEETTR 494 (857)
Q Consensus 484 ~A~~lf~~M~~ 494 (857)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.14 Score=51.95 Aligned_cols=281 Identities=11% Similarity=0.085 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
+|..--..+.+-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~--------------- 66 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA--------------- 66 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH---------------
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc---------------
Confidence 3444445566777899999999999988864 677888999999999998887654
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
-+..+|..+...|.+......+ .+.......+.... ..++..|-..|..++...+++
T Consensus 67 ------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l------------~~~v~~ye~~~~~e~Li~~Le 123 (336)
T d1b89a_ 67 ------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADEL------------EELINYYQDRGYFEELITMLE 123 (336)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHH------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHH------------HHHHHHHHHcCChHHHHHHHH
Confidence 2566899999999988776543 22233333444443 678899999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
..... -..+...++.++..|++.+. ++-++.+... .. . +-..-++..|-..+.++++.-++
T Consensus 124 ~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~---s~-~---y~~~k~~~~c~~~~l~~elv~Ly---------- 184 (336)
T d1b89a_ 124 AALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELF---WS-R---VNIPKVLRAAEQAHLWAELVFLY---------- 184 (336)
T ss_dssp HHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHH---ST-T---SCHHHHHHHHHTTTCHHHHHHHH----------
T ss_pred HHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhc---cc-c---CCHHHHHHHHHHcCChHHHHHHH----------
Confidence 77543 24566778999999998753 3333333322 11 1 11233455555555555444444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
.+.|++++|..+.-+ ..++..-....+..+.+..+.+...++.....+.
T Consensus 185 -----------~~~~~~~~A~~~~i~------------------~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-- 233 (336)
T d1b89a_ 185 -----------DKYEEYDNAIITMMN------------------HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-- 233 (336)
T ss_dssp -----------HHTTCHHHHHHHHHH------------------STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--
T ss_pred -----------HhcCCHHHHHHHHHH------------------cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--
Confidence 444444444433221 1112212222233333333333333333322221
Q ss_pred CCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 546 QLDQT-----------KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 607 (857)
Q Consensus 546 ~pd~~-----------t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~ 607 (857)
.|+.. -..-++..+-+.+++.....+++...+.| +..+.+++...|...++++.-.+.+
T Consensus 234 ~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 234 KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 11110 11234444555666666666666655544 3467777777777777765544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0036 Score=56.74 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=71.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
....|.+.|++++|+..|.+.... .+-+...|..+-..|...|++++|...|+...+-.+.+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345567788888888888877762 233556677777788888888888888888877555677888888888888888
Q ss_pred HHHHHHHHHHHHHcC
Q 003016 482 FSKAKELFEETTRAN 496 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g 496 (857)
+++|...|++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888888744
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.19 E-value=0.0018 Score=60.93 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
|+..........|.+.|++++|+..|.+..... | +...|..+..+|...|+++.|+..|...++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~ 66 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN---------------PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence 333344444444555555555555555544432 3 333444444455555555555555555554
Q ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 543 SGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 543 ~g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
. .|+ ...|..+-.+|.+.|++++|...|+...
T Consensus 67 l--~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 67 L--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp S--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 232 3344445555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.0045 Score=56.10 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=78.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
-..|.+.|+++.|...|..+++..+ .+...|..+...|...|++++|...|+...+. -+-+..+|..+..+|..
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccch----hhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHH
Confidence 3467789999999999999988633 38899999999999999999999999999873 23457899999999999
Q ss_pred cCCHHHHHHHHHHHHcC
Q 003016 277 VGLLKELVKLIERMRQK 293 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~ 293 (857)
.|++++|...|++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999999874
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.92 E-value=0.0034 Score=53.25 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=70.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~ 275 (857)
+-..+-+.|+++.|...|+.+++..+ .+..+|..+..+|.+.|++++|+..|++..+- -+.+..+|..+...|.
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEP----EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccccc----ccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHH
Confidence 34456677888888888888877532 36788888888888888899998888887763 2335788888888888
Q ss_pred hcCCHHHHHHHHHHHH
Q 003016 276 QVGLLKELVKLIERMR 291 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~ 291 (857)
..|++++|++.|++..
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888888753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.02 Score=52.33 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+|+.+..+|.+.|++++|...++.....-+.++..|..+..+|...|++++|+..|++.....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 466677788889999999999988887555688889999999999999999999999988854
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.76 E-value=0.0053 Score=51.99 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=70.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 401 ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 401 ~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
.+...+.+.|++++|+..|++..... +-+..+|..+-.++.+.|++++|...|+...+..+.+...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 34556778888888888888877621 2246677778888888888888888888887755667888888888899999
Q ss_pred CHHHHHHHHHHH
Q 003016 481 MFSKAKELFEET 492 (857)
Q Consensus 481 ~~~~A~~lf~~M 492 (857)
++++|++.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998888875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0041 Score=53.75 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=10.8
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 518 SSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
..+-.+|...|++++|...|+++++
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0035 Score=54.21 Aligned_cols=92 Identities=10% Similarity=-0.031 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHhHHcCCCCCC---HHHH
Q 003016 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH---EALRIFNLMLEDCNLYPD---IAAY 267 (857)
Q Consensus 194 ~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~---~A~~vf~~m~~~~gi~pd---~~t~ 267 (857)
..++..+...++++.|.+.|+..+... +.+..++..+..++.+.++.+ +|+.+|++.... .|+ ..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~~~~~~~~~~ 75 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---cCCchHHHHH
Confidence 456777778888888888888887753 237778888888887765544 588888887652 232 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..+..+|.+.|++++|.+.|+++.+
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7788888888888888888888877
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.59 E-value=0.35 Score=46.59 Aligned_cols=221 Identities=10% Similarity=-0.043 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+..|-..+-+.+++++|++.|.+..+. -|..++..|-..|.. ..+...|...+......+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----------- 68 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 68 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----------
Confidence 4444545555566666666666666552 244454445444444 445566666666655443
Q ss_pred CCCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHH----HcCCH
Q 003016 306 WDPVLEPDLVVYNAVLNACV----PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFW----EEGKI 377 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~----k~g~~ 377 (857)
+......+...+. ...+.+.|...++...+.|..... ..|...+. .....
T Consensus 69 -------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~---------------~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 69 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC---------------ASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH---------------HHHHHHHHHCSSSCCCH
T ss_pred -------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH---------------HhhcccccCCCcccchh
Confidence 2222333322222 234556666666666555432111 11222222 23345
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CCCHH
Q 003016 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHID 449 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~ 449 (857)
..|...+......+ +...+..|...|.. ..+...+...+....+ .| +......+-..|.. ..+.+
T Consensus 127 ~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 127 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccc-cc---ccccccchhhhcccCcccccchh
Confidence 55555555544432 33445555555554 3445566666666554 22 33333333333333 46788
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~lf~~M~~~g 496 (857)
.|...|....+. -+...+..|..+|.+ ..+.++|.+.|++....|
T Consensus 200 ~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 888888887763 256666777777764 337788999998887776
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.4 Score=46.15 Aligned_cols=64 Identities=6% Similarity=-0.099 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFK 338 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~ 338 (857)
|+..+..|-..+-+.+++.+|++.|++..+.| |...+-.|-..|.. ..+...|...+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~ 62 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYA 62 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhc
Confidence 44566666666777788888888888776654 34444444444543 456667776666
Q ss_pred HHHHcC
Q 003016 339 QLRKSG 344 (857)
Q Consensus 339 ~m~~~g 344 (857)
...+.+
T Consensus 63 ~a~~~~ 68 (265)
T d1ouva_ 63 KACDLN 68 (265)
T ss_dssp HHHHTT
T ss_pred cccccc
Confidence 666554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.49 E-value=0.036 Score=49.49 Aligned_cols=64 Identities=11% Similarity=-0.004 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|+.+..+|.+.|++++|...+....+..+.++.+|..+..+|...|++++|+..|++.....
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677788889999999999999999888666789999999999999999999999999998854
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.029 Score=51.71 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=84.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 198 ~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
......|+++.|...|...+..-.....++ ......+...-..+.. .-...+..+...+...
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-------------~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDD-------------LRDFQFVEPFATALVE-----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-------------GTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccccccc-------------CcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHC
Confidence 456777889999888888876532111111 1111112222222322 2345778888999999
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK-----SGLKPSAAT 351 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 351 (857)
|++++|+..++++... -+-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 81 g~~~~Al~~~~~al~~----------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFE----------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998875 345888899999999999999999999998744 589998766
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.049 Score=49.52 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCC----C----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVV----G----------TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~----~----------d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
...-+.|.+.|++++|...|.+..+.... . -..+|+-+..+|.+.|++++|+..++..... -+.
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~ 94 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSN 94 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--ccc
Confidence 45567888999999999999887643211 0 1345777888999999999999999998873 234
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
+..++..+-.+|...|++++|...|+...+--+.|......+-...-+.+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999998733345666555555444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.029 Score=51.71 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH--
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL-- 542 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~-- 542 (857)
...+..+...+.+.|++++|+..++++.... | +...|..++.+|...|+..+|++.|+++.+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---------------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH---------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999888854 5 777888899999999999999988888743
Q ss_pred ---cCCCCCHHH
Q 003016 543 ---SGCQLDQTK 551 (857)
Q Consensus 543 ---~g~~pd~~t 551 (857)
.|+.|...+
T Consensus 132 ~~eLG~~P~~~l 143 (179)
T d2ff4a2 132 ADDLGIDPGPTL 143 (179)
T ss_dssp HHHHSCCCCHHH
T ss_pred HHHhCCCcCHHH
Confidence 477777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.019 Score=49.71 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD--- 513 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd--- 513 (857)
.+-..+.+.|++++|...|....+-.+.+..+|..+..+|.+.|++++|+..++++.... |+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---------------~~~~~ 73 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---------------RENRE 73 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------HHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC---------------cccHH
Confidence 344567778888888888888877556678999999999999999999999999987633 32
Q ss_pred -----HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 514 -----EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 514 -----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
..+|..+-..+...+++++|...|.....
T Consensus 74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 13555666677777888888888877665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.11 E-value=0.086 Score=47.65 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+.+-.+|.+.|++++|...++....-.+.+..+|..+..+|...|++++|...|.+...
T Consensus 68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555543344555555555555555555555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=95.97 E-value=0.095 Score=46.54 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC----CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRG----VVGT-----------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~----~~~d-----------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
..-.+.+.+.|++.+|...|.+..+.- ..++ ..+|+-+..+|.+.|++++|+..+...... -+
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p 98 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DK 98 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--cc
Confidence 455567789999999999999876421 1112 246777889999999999999999998872 34
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
.+..+|..+..++...|++++|...|+...+-.+-|..+.+.+-.
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567899999999999999999999999998844445666555433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.065 Score=46.05 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-----HHHHHH
Q 003016 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-----IAAYHS 269 (857)
Q Consensus 195 ~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-----~~t~~~ 269 (857)
.+-..+...|++++|...|..++...+ .+..+|..+-.+|.+.|+++.|+..|+++.+-..-.++ ..+|..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344567788999999999999887532 37888999999999999999999999887651000011 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
+...+...+++++|++.|.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 77888888999999999988765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.72 E-value=0.21 Score=44.94 Aligned_cols=63 Identities=8% Similarity=-0.092 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+|+.+-.+|.+.|++++|+..++..... -+.+..+|..+..+|...|++++|...|.+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667778889999999999999998873 2457889999999999999999999999999874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.64 E-value=0.073 Score=48.12 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc--------------CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQR--------------GVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~--------------~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
......+.+.|++++|...|.+..+. .+. .....|+.+..+|.+.|++++|+..+....+. -+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p 108 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 108 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hh
Confidence 44556677889999998888776421 011 12345677788889999999999999998862 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
.+..+|..+-.++.+.|++++|...|+...+--+.+...+..+..+..
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456778888899999999999999999888744456666666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.62 E-value=0.088 Score=47.53 Aligned_cols=97 Identities=6% Similarity=0.055 Sum_probs=77.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-------------CCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSL-------------RHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~-------------~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
......+.+.|++++|+..|.+.... ....| +...+..+-.++.+.|++++|+..+....+--+.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 110 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence 34455677889999999988776431 01122 23356677788999999999999999998866678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|..+..+|.+.|++++|++.|++..+..
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999854
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.17 E-value=0.017 Score=57.09 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 587 FTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+......+.+.|+.++|.+++++...
T Consensus 102 ~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 102 SLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33344556667888888888887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.09 E-value=0.017 Score=57.12 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcC
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVG 278 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g 278 (857)
..+.|++++|+..++..++..+ .|...+..|...|+..|++++|...|+...+. .|+ ...+..+...+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P----~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcc
Confidence 3456899999999999887533 38889999999999999999999999998773 354 444444443333222
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
..+++..-...-... ...++...+......+.+.|+.++|.+++.++.+.
T Consensus 79 ~~~~a~~~~~~~~~~---------------~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 79 ARKDFAQGAATAKVL---------------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHTTSCCCEECC---------------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhhhhhcc---------------cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222221111100000 01223344444556677889999999999888764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.08 E-value=0.042 Score=48.56 Aligned_cols=117 Identities=14% Similarity=0.035 Sum_probs=80.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA----------GRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~----------g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
|-+.+.+++|+..++.+++.. +.+..+++.+-.+|... +.+++|+..|++..+- -+.+..+|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~ 80 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhh
Confidence 344556788888888887753 33677777777776643 4457888888888763 1335778888
Q ss_pred HHHHHHhcCC-----------HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003016 270 VAVTLGQVGL-----------LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (857)
Q Consensus 270 li~~~~~~g~-----------~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~ 338 (857)
+..+|...|. +++|.+.|++... +.|+...|..-+..+ ..|.+++.
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-----------------l~P~~~~~~~~L~~~------~ka~~~~~ 137 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----------------EQPDNTHYLKSLEMT------AKAPQLHA 137 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----------------HCTTCHHHHHHHHHH------HTHHHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-----------------cCCCHHHHHHHHHHH------HHHHHHHH
Confidence 8888876543 5778888888876 567777766666554 35677777
Q ss_pred HHHHcCC
Q 003016 339 QLRKSGL 345 (857)
Q Consensus 339 ~m~~~g~ 345 (857)
+..+.|+
T Consensus 138 e~~k~~~ 144 (145)
T d1zu2a1 138 EAYKQGL 144 (145)
T ss_dssp HHHHSSS
T ss_pred HHHHHhc
Confidence 7777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.63 E-value=0.057 Score=47.65 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=73.6
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHH
Q 003016 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDC 451 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A 451 (857)
-+.+.+++|...|+...+.+. -+..+|..+..+|...+++..+.+ ..+.+++|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~A 60 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHHH
Confidence 344556666666666655542 234445555555444333222211 12334566
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhh
Q 003016 452 ISIFQHMKDHCEPNIGTVNAMLKVYSRND-----------MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 520 (857)
Q Consensus 452 ~~if~~m~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~l 520 (857)
...|+...+--+.+..+|+.+..+|...| .+++|.+.|++... +.|+..+|..-
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---------------l~P~~~~~~~~ 125 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---------------EQPDNTHYLKS 125 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---------------HCTTCHHHHHH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc---------------cCCCHHHHHHH
Confidence 66676666644456677777777766543 36788888988887 44877776655
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 521 LEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
+.-+ ..+.+++.+..+.|+
T Consensus 126 L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 126 LEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHH------HTHHHHHHHHHHSSS
T ss_pred HHHH------HHHHHHHHHHHHHhc
Confidence 5544 456677777776664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.36 E-value=0.25 Score=43.64 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=60.8
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC----------HhHhhhhHHHHHhcCCHHHHH
Q 003016 467 GTVNAM--LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD----------EYTYSSMLEASATAHQWEYFE 534 (857)
Q Consensus 467 ~~~~~l--i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd----------~~t~~~ll~a~~~~g~~~~a~ 534 (857)
.+|..+ ...+.+.|++++|+..|.+...... -.|+ ...|+.+-.+|...|++++|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~------------~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~ 75 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISH------------TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 75 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT------------TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCh------------hhhhhhhcccchhHHHHHHHHHHHHHHcCccchhh
Confidence 355555 4456678999999999999876431 1121 346777777788888888888
Q ss_pred HHHHHHHHc-----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 535 YVYKGMALS-----GCQLDQ-----TKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 535 ~l~~~m~~~-----g~~pd~-----~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
..+++.++. ...++. ..++.+-.+|...|++++|...|+...
T Consensus 76 ~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 76 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777776642 112221 134444555666666666666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.048 Score=59.18 Aligned_cols=112 Identities=11% Similarity=-0.073 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
+..+-..+.+.|+.++|...+......+ + ..++..+...+...|++++|...|.+.... .+-+...|+.+-..+.
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILAS 197 (497)
T ss_dssp --------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 3677778888899988887776654322 1 245777888899999999999999998772 2344578999999999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
..|+..+|...|.+...-.+|-..++..|...|.+..
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988756688889999988776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.17 E-value=0.3 Score=43.11 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCc----------HHHHHHHHHHHHcCCCHHHHHHHHHHHhh------CCCCC---
Q 003016 405 CLCNNGRWQDAMLVVEKIKSLRHSKPL----------EITFTGLIISSMDGGHIDDCISIFQHMKD------HCEPN--- 465 (857)
Q Consensus 405 ~~~~~g~~~~A~~l~~~m~~~~g~~pd----------~~t~~~ll~a~~~~g~~~~A~~if~~m~~------~~~p~--- 465 (857)
.+.+.|++++|+..|.+......-.|+ ..+|+.+-.+|.+.|++++|...++.... ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344456666666666655542111121 24566666667777777777766666543 11122
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 --IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 --~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...++.+-.+|...|++++|++.|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567778889999999999999998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.3 Score=52.50 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~ 282 (857)
+.++.|...+....+. ..++...++.+-..+.+.|+.+.|...+..... ++ ..++..+...+...|++++
T Consensus 100 ~~Y~~ai~~l~~~~~l----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNV----DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS-----YICQHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHTC-----------------------------------CCHHHH-----HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCC----ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHcccHHH
Confidence 3445555444433221 223556677777778888888888877766554 22 3467777788888888888
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
|...|.+.... .+-+..+|+.+...+...|+..+|...|.+..... .|-...+
T Consensus 171 A~~~y~~A~~l----------------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 171 AESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred HHHHHHHHHHH----------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 88888888764 23456788888888888888888888888877653 2344444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.43 E-value=2.5 Score=35.18 Aligned_cols=124 Identities=8% Similarity=0.031 Sum_probs=91.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC----------------CHHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIP----------------HPLF 586 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p----------------~~~~ 586 (857)
+...|..+++.++..+...+ .+..-||.+|.-....-+-+...++++.+-.. .+.| +...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 34458899999999988764 35566776666665555655566666555332 2211 3345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 587 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
...-++.+..+|+-+.-.++.+.+.. .-+|++..+-.+-.|+.+-|+..++..++.+..+.|++
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 56668888889998888888888655 56888999999999999999999999999999999987
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=1.4 Score=34.81 Aligned_cols=79 Identities=16% Similarity=0.096 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-H
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL--K-SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-I 264 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~--~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~ 264 (857)
+...+-.+-..+.+.|+++.|...|++.++....... + ...+++.|-.+|.+.|++++|+..|++..+. .|+ .
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l---~P~~~ 80 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL---DPEHQ 80 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh---CcCCH
Confidence 4445556777788889999999999888765332211 2 2567888999999999999999999998873 354 4
Q ss_pred HHHHHH
Q 003016 265 AAYHSV 270 (857)
Q Consensus 265 ~t~~~l 270 (857)
.+++.+
T Consensus 81 ~a~~Nl 86 (95)
T d1tjca_ 81 RANGNL 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.55 E-value=5.8 Score=32.88 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=93.0
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 003016 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 452 (857)
-.|.+++..++..+.... .+..-||-+|.-....-+-+-.+..++.+-+... ...|+++....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD--------------ls~C~Nlk~vv 76 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSVV 76 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcC--------------chhhhcHHHHH
Confidence 346777777777776553 2334466667666666666666666665544111 13456666655
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHH
Q 003016 453 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEY 532 (857)
Q Consensus 453 ~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~ 532 (857)
..+-.+. .+....+.-++.+.+.|.-+.-.++++.+.+.+ +|+......+..||.+.|...+
T Consensus 77 ~C~~~~n----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--------------~i~~~~llkia~A~kkig~~re 138 (161)
T d1wy6a1 77 ECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN--------------EVSASILVAIANALRRVGDERD 138 (161)
T ss_dssp HHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--------------CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhc----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhcchhh
Confidence 5555544 355667777888888888888888888876643 5677777788888888888888
Q ss_pred HHHHHHHHHHcCCC
Q 003016 533 FEYVYKGMALSGCQ 546 (857)
Q Consensus 533 a~~l~~~m~~~g~~ 546 (857)
+.+++.+.-+.|++
T Consensus 139 ~nell~~ACe~G~K 152 (161)
T d1wy6a1 139 ATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhHH
Confidence 88888888877753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.47 E-value=1.7 Score=34.26 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc----CCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 401 ELACCLCNNGRWQDAMLVVEKIKSL----RHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 401 ~lI~~~~~~g~~~~A~~l~~~m~~~----~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.+...+.+.|++++|...|++..+. ....++ ..++..+-.+|.+.|++++|...++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3444455555555555555544321 011111 23455555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=81.13 E-value=13 Score=30.62 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 560 (857)
++++|++.|.+..+.| . | .....+ +.....+.++|...+++..+.| ++.....|-..|.
T Consensus 8 d~~~A~~~~~kaa~~g-------------~-~--~a~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-------------E-M--FGCLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTT-------------C-T--THHHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-------------C-h--hhhhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 4667777777776655 1 1 111111 1122356677777777766655 2333333333333
Q ss_pred H----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhhCC
Q 003016 561 R----AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAP 614 (857)
Q Consensus 561 ~----~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M~~~~ 614 (857)
. ..+.++|.++|+...+.|. +.....|-..|.. ..+.++|..+|++-.+.|
T Consensus 67 ~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 67 NGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hccccchhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 2 3345666677666666552 2333333333333 235556666665554444
|