Citrus Sinensis ID: 003017

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------
Protein Sequence
MLSFKNFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccHHHHHcccccccccccccHHHcccHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHcccccccccccccccHHHHccccccccccccccccEcccccccccccccccccEEEccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEcccccccEEEEEccccccccccccccccccccccccEEcccccccccccEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEccccccEccccccEcccccccccccccccccccHccccccccccccccccccccccccccHHcccccEEccHHHHHHccc
Coil and Loop (DISEMBL)
mlsfknfcIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISnlqlpddearndiplpqvAERClgnrqgdvaapydsnisnshggmnlgradsgghmswlrKCTSkifsispikksehistsmleeeepqsavptimqekaegpgvlvskeaigysipedepqssfrlvndstnremddeyapsvdghsymdskvedvAEDSQQSelrsgkrrpgrkrksgvnrtRSVKAAVEDAKLflgespegaglnasfqahedsqgissHTQEASNmakkrrrpqtskttqsekdgadsegysdsvtagggrrkrhqtvatvsqtpgerrynlrrhktSSAVLALEASADLSKANKTvaevtnpvevvsnpksastfppavlnengkstHLVQVTSVKSMELSRDRAVRFKsttnivdenadapksientvlseevngtseyvdedenggrvledeedddddsdhpgeasigKKLWNFFTS
Flexible Loop (DISEMBL)
MLSFKNFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMrskisaldqqefeishreeklerreqaldkksdrvkekendlaarlksvkerekfvkaeekklelekqkliadkeslQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSaeerlkkeecamRDYVQREIEAIRLDKEAFEATMrheqlvlsekaknDRRKMLEEFEMQRMNQEaellnrrdKMEKELQErtrtfeekrervlNDIAHLKEVAEGEIQEIKSERdqlekekhevkvnreklqeqqlgmrkdidelDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKifsispikksEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGysipedepqssfrLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAedsqqselrsgkrrpgrkrksgvnrtrsvkaaVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTqeasnmakkrrrpqtskttqsekdgadsegysdsvtagggrrkrhqtvatvsqtpgerrynlrrHKTSSAVLALEASADLSKANKTVAEvtnpvevvsnpksastfppavlnengksTHLVQVTsvksmelsrdravrfksttnivdenadapksientvlseevngtseyvdedenggrVLEDeedddddsdhpgeasigkklwnffts
Low Complexity Region (SEG)
MLSFKNFCIYGLLQVEIQKLLDDQRAILDAkqqefeleleekrksieeemrsKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERekfvkaeekklelekqklIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQertrtfeekrerVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTskifsispikksEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELrsgkrrpgrkrksgVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLedeedddddsdHPGEASIGKKLWNFFTS
Disordered region (IsUnstruct)
***FKNFCIYGLLQVEIQKLLDDQRAILD***************************************************************************************************ILKV*******************************************************************************************************************DYVQREIEAIRLD******************************************************************************************************************DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQL*****************C*********************************MSWLRKCTSKIFSI*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LWNFFTS
Disordered Region (DISEMBL)
MLSFKNFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISH*************************LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHI*************VPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSK*********************************VKAAVEDAKLFLGESPEGAGLNASF*******************************************************************PGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVL*************GEASIGKKLWNFFTS
Disordered Region (DISPRO)
*LSFKNFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQV*ERCLG******************************HMSWLRKCTSKIFSIS****************************************************************E********************************************************************************************************************************************S***************************************************************KSTHLVQVTSVKSMELSRDRAVRFKSTTNIVD*************************************************EASIGKKLWNFFTS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSFKNFCIYGLLQVEIQKLLDDQRAILDAKxxxxxxxxxxxxxxxxxxxxxKISALDQQEFEISHRxxxxxxxxxxxxxxxxxxxxxxxxLAARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	857	2.2.26 [Sep-21-2011]
Q9FLH0	1042	Putative nuclear matrix c	no	no	0.568	0.467	0.267	2e-31

>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 265/515 (51%), Gaps = 28/515 (5%)

Query: 17  IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
           IQ +L +Q  IL  ++ + E ELE K KS+E E+ SK  A + +E +I  RE+ +  +E 
Sbjct: 375 IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 77  ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 136
            L+ +S  + EKE D+  +  ++ E+EK + A E+ +  +   L  +KE L+ L +E+ Q
Sbjct: 435 DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 137 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
             +    +  ++    QKL+  + E SEL  L+ +LK++++  R Q+  +L E + L+ +
Sbjct: 495 SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 197 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
           + KFE EWE +D KR+E+ KE E I  +++          + +K+E  A+R+  + ++E+
Sbjct: 555 KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316
           +  ++E F   M  E      K + +R   L   EMQ+   E  + N+R+++E   ++R 
Sbjct: 615 LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 317 RTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
           + FE++++     I  LKE+AE E++ ++ E  +L+ E+ E+K++RE+ + +   ++  +
Sbjct: 675 KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 377 DELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDI 436
           +EL +   +L   R   + E++     +E+    +N    +    ++ +QL +       
Sbjct: 735 EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSN------- 787

Query: 437 PLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-------RADSGGHMSWL 482
            L +  E+    +Q  V+   +       S +SNS  G N            S    SW+
Sbjct: 788 -LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFSWI 846

Query: 483 RKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 517
           ++CT+ IF  SP K      ++++   E +  VP+
Sbjct: 847 KRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	857
147815739	1234	hypothetical protein VITISV_038920 [Viti	0.957	0.665	0.523	0.0
359473006	1213	PREDICTED: putative nuclear matrix const	0.947	0.669	0.525	0.0
255566809	1172	ATP binding protein, putative [Ricinus c	0.914	0.668	0.470	1e-170
356502495	1210	PREDICTED: putative nuclear matrix const	0.950	0.673	0.433	1e-155
224101667	1008	predicted protein [Populus trichocarpa]	0.754	0.641	0.495	1e-153
147815441	1140	hypothetical protein VITISV_008657 [Viti	0.878	0.660	0.449	1e-152
356526609	1190	PREDICTED: putative nuclear matrix const	0.933	0.672	0.412	1e-146
356526607	1191	PREDICTED: putative nuclear matrix const	0.933	0.671	0.412	1e-146
356568883	1191	PREDICTED: putative nuclear matrix const	0.928	0.668	0.415	1e-145
449525632	1204	PREDICTED: LOW QUALITY PROTEIN: putative	0.939	0.668	0.398	1e-143

>gi|147815739|emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/865 (52%), Positives = 624/865 (72%), Gaps = 44/865 (5%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VEIQKLLD+ RAILD K+QEFELE+E+KR S++EE+RSK+  ++Q+E E+ HREEKL +
Sbjct: 393  RVEIQKLLDEHRAILDTKKQEFELEMEQKRNSVDEELRSKVHEVEQKEVEVLHREEKLGK 452

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL+K+ +RVKEKE +L A+LK++KE+EK +KAEEK++E EK++++ADKESL +LK E
Sbjct: 453  REQALEKRLERVKEKEKELEAKLKTLKEKEKSLKAEEKRVEGEKKQMLADKESLHLLKDE 512

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I ++  +QELQI EE ++LK+ EEE+SE  RLQ +LKQ+I+  RHQ+E+L KE EDL
Sbjct: 513  LEKIRADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQKEREDL 572

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q+R  FEK+WE LDEKR  I KE  +I DEK+KLEKL  S EERLKKE+ AM +++QRE
Sbjct: 573  KQERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKLAMEEHIQRE 632

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +EA+R++KE+F A M+HEQ+ LSEKA+ND  +ML +FE+++ + E E+ NR+D+++K LQ
Sbjct: 633  LEAVRIEKESFAAIMKHEQVTLSEKAQNDHSQMLRDFELRKRDLEIEMQNRQDEIQKRLQ 692

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER R FEE+RER LN+I HLKEVA  EI+E+K+ER ++EKEK EV +N+ +L+  QL MR
Sbjct: 693  ERERAFEEERERELNNINHLKEVARREIEEMKTERRRIEKEKQEVLLNKRQLEGHQLEMR 752

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            KDIDEL IL R+L   REQF +E++RFL FV+KH +CKNCGE+ R FV+++LQLP+ E  
Sbjct: 753  KDIDELGILSRKLKDQREQFIKERDRFLTFVDKHKTCKNCGEITREFVLNDLQLPEMEV- 811

Query: 434  NDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSIS 493
               PLP +A+  L + QG++AA   +N+    G ++L  + SGG MS+LRKC +KIF++S
Sbjct: 812  EAFPLPNLADEFLNSPQGNMAASDGTNVKIXTGEIDLVSSGSGGRMSFLRKCATKIFNLS 871

Query: 494  PIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVND 553
            P KKSEH+   +L EE P   +   + EKAEGP +      +G SI EDE + SF + ND
Sbjct: 872  PSKKSEHVGVQVLREESPLLDLQVNL-EKAEGPSI------VGQSIAEDELEPSFGIAND 924

Query: 554  STN----------REMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSG 603
            S +          RE+D  +A SVDG S M SK ++  EDSQQSEL+SG+R+PGRKR++G
Sbjct: 925  SFDIQQLHSDSVMREVDGGHAQSVDGVSNMGSKEQEGPEDSQQSELKSGRRKPGRKRRTG 984

Query: 604  VNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQE-ASNMAKKRRRPQT 662
            V+RTRSVK  +        E P     N S   +E+ +  +SH ++ AS + +KR+R  +
Sbjct: 985  VHRTRSVKNVLNG-----DERP-----NDSTYTNEEGERETSHAEKAASTITRKRQRAPS 1034

Query: 663  SKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALE 722
            S+ T+SE+D ADSEG SDSVTA GGR KR QTVA V QTPGE+RYNLRRHKT+  V   +
Sbjct: 1035 SRITESEQDAADSEGRSDSVTA-GGRGKRRQTVAPVVQTPGEKRYNLRRHKTAGTVATAQ 1093

Query: 723  ASADLSKANK--TVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMEL-- 778
            ASA+L K ++        N ++  +NPK+AS+ P    ++N K+T LV VT++KS+E+  
Sbjct: 1094 ASANLPKRDEKGGDGGDDNTLQTKANPKAASS-PSLADSDNPKTTPLVHVTTLKSVEIRE 1152

Query: 779  -SRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNG----TSEYVDEDENGGRV-LEDE 832
             S DR VRFK T +IV  N D+ +  EN  L +E+ G    T  Y  EDENG     ED+
Sbjct: 1153 YSPDRVVRFK-TVDIVGGNNDSARLAENMELRQEIPGNPGDTPGY--EDENGSMSHEEDD 1209

Query: 833  EDDDDDSDHPGEASIGKKLWNFFTS 857
              D+D+S+HPG+ASIGKKLWNFFT+
Sbjct: 1210 NSDEDESEHPGDASIGKKLWNFFTT 1234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473006|ref|XP_002278531.2| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/871 (52%), Positives = 620/871 (71%), Gaps = 59/871 (6%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VEIQKLLD+ RAILD K+QEFELE+E+KR S++EE+RSK+  ++Q+E E+ HREEKL +
Sbjct: 375  RVEIQKLLDEHRAILDTKKQEFELEMEQKRNSVDEELRSKVHEVEQKEVEVLHREEKLGK 434

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL+K+ +RVKEKE +L A+LK++KE+EK +KAEEK++E EK++++ADKESL +LK E
Sbjct: 435  REQALEKRLERVKEKEKELEAKLKTLKEKEKSLKAEEKRVEGEKKQMLADKESLHLLKDE 494

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I ++  +QELQI EE ++LK+ EEE+SE  RLQ +LKQ+I+  RHQ+E+L KE EDL
Sbjct: 495  LEKIRADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQKEREDL 554

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q+R  FEK+WE LDEKR  I KE  +I DEK+KLEKL  S EERLKKE+ AM +++QRE
Sbjct: 555  KQERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKLAMEEHIQRE 614

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +EA+R++KE+F A M+HEQL          RK   E EMQ         NR+D+++K LQ
Sbjct: 615  LEAVRIEKESFAAIMKHEQL----------RKRDLEIEMQ---------NRQDEIQKRLQ 655

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER R FEE+RER LN+I HLKEVA  EI+E+K+ER ++EKEK EV +N+ +L+  QL MR
Sbjct: 656  ERERAFEEERERELNNINHLKEVARREIEEMKTERRRIEKEKQEVLLNKRQLEGHQLEMR 715

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            KDIDEL IL R+L   REQF +E++RFL FV+KH +CKNCGE+ R FV+++LQLP+ E  
Sbjct: 716  KDIDELGILSRKLKDQREQFIKERDRFLTFVDKHKTCKNCGEITREFVLNDLQLPEMEV- 774

Query: 434  NDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSIS 493
               PLP +A+  L + QG++AA   +N+  S G ++L  + SGG MS+LRKC +KIF++S
Sbjct: 775  EAFPLPNLADEFLNSPQGNMAASDGTNVKISTGEIDLVSSGSGGRMSFLRKCATKIFNLS 834

Query: 494  PIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVND 553
            P KKSEH+   +L EE P   +   + EKAEGP +      +G SI EDE + SF + ND
Sbjct: 835  PSKKSEHVGVQVLREESPLLDLQVNL-EKAEGPSI------VGQSIAEDELEPSFGIAND 887

Query: 554  STN----------REMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSG 603
            S +          RE+D  +A SVDG S M SK ++  EDSQQSEL+SG+R+PGRKR++G
Sbjct: 888  SFDIQQLHSDSVMREVDGGHAQSVDGVSNMGSKEQEGPEDSQQSELKSGRRKPGRKRRTG 947

Query: 604  VNRTRSVKAAVEDAKLFLGESPEGAGLNA------SFQAHEDSQGISSHTQE-ASNMAKK 656
            V+RTRSVK  VEDAK FLGE+PE   LN       S   +E+ +  +SH ++ AS + +K
Sbjct: 948  VHRTRSVKNVVEDAKAFLGETPEIPELNGDERPNDSTYTNEEGERETSHAEKAASTITRK 1007

Query: 657  RRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSS 716
            R+R  +S+ T+SE+D ADSEG SDSVTA GGR KR QTVA V QTPGE+RYNLRRHKT+ 
Sbjct: 1008 RQRAPSSRITESEQDAADSEGRSDSVTA-GGRGKRRQTVAPVVQTPGEKRYNLRRHKTAG 1066

Query: 717  AVLALEASADLSKANK--TVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVK 774
             V   +ASA+L K ++        N ++  +NPK+AS+ P    ++N K+T LV VT++K
Sbjct: 1067 TVATAQASANLPKRDEKGGDGGDDNTLQTKANPKAASS-PSLADSDNPKTTPLVHVTTLK 1125

Query: 775  SMEL---SRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNG----TSEYVDEDENGGR 827
            S+E+   S DR VRFK T +IV  N D+ +  EN  L +E+ G    T  Y  EDENG  
Sbjct: 1126 SVEIREYSPDRVVRFK-TVDIVGGNNDSARLAENMELRQEIPGNPGDTPGY--EDENGSM 1182

Query: 828  V-LEDEEDDDDDSDHPGEASIGKKLWNFFTS 857
               ED+  D+D+S+HPG+ASIGKKLWNFFT+
Sbjct: 1183 SHEEDDNSDEDESEHPGDASIGKKLWNFFTT 1213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566809|ref|XP_002524388.1| ATP binding protein, putative [Ricinus communis] gi|223536349|gb|EEF37999.1| ATP binding protein, putative [Ricinus communis]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 404/858 (47%), Positives = 568/858 (66%), Gaps = 74/858 (8%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            ++EIQ+LLD+ RA L AK+QE ELELEE+RK ++EE+RSK+ AL Q+E E+ H EEKL +
Sbjct: 375  KMEIQELLDEHRATLVAKRQELELELEERRKILDEELRSKVEALGQREVEVLHGEEKLRK 434

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQALDKK++RVKEKE DL  +LK+ KE+EK +KAE+KKLELE++ L+A+++SLQ LK +
Sbjct: 435  REQALDKKAERVKEKEKDLDMKLKNAKEKEKSMKAEQKKLELEQKTLLAERDSLQNLKDD 494

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
             ++I SE + QE QI E+ + LK+  +E+ E LRLQ++LKQ++E  RHQ+E +LKE E+L
Sbjct: 495  CEKIRSEISNQEQQIGEKSENLKLTNDERLEHLRLQAELKQELEKCRHQEEYILKEAEEL 554

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +++R+ FEKE EVL+EKR +++KE  +I +E++K ++LQ++ EERLKKEE AM++Y Q+E
Sbjct: 555  KEERKNFEKELEVLEEKRAQLSKELNEITEEREKFKQLQYTMEERLKKEENAMKEYTQKE 614

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +E +R++KE FE   R+EQ V+S++AK +  +M+++FE QR   EA+L++RR++MEK L+
Sbjct: 615  LETVRVEKEYFEMRKRNEQQVISKQAKTEHDQMVQDFESQRSTFEADLVSRREEMEKGLR 674

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER R F+ +R+R L +I + KE A+ E++EI+ ER  +EKEK EV  N+E+L  QQ GMR
Sbjct: 675  ERERAFQLQRDRELKEINYSKEAAQKELEEIRIERHVIEKEKQEVAKNKEELDGQQFGMR 734

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            KDIDEL +L  +L   REQ  RE+  FL FVEKH SCKNCG++   F++S+L  PD E R
Sbjct: 735  KDIDELVMLSNKLRDQREQVIRERNHFLAFVEKHKSCKNCGDVTAEFILSDLLPPDMEDR 794

Query: 434  NDIPLPQVAERCLGNRQGDVA-APYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSI 492
              + L + A+        DV  +P   N+  S G ++L   +S   +SW RKCTSKIFSI
Sbjct: 795  KILLLQERADEL-----RDVQDSPGALNVKKSQGELDL---NSQECVSWFRKCTSKIFSI 846

Query: 493  SPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVN 552
            SP KK E +              P + +EK +  G L  KEA    +P DE + SF   +
Sbjct: 847  SP-KKIEQV------------LAPVLAEEKTDALGTLARKEASRNGVPGDESRPSFGTTH 893

Query: 553  DSTNREM---------DDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSG 603
            DS   +           D  + S D HS +DSKV    EDS  S+L+S +R+PG++RK G
Sbjct: 894  DSVEIQQLQFDSIKVEGDGNSISFDDHSNVDSKV----EDSGPSKLKSSQRKPGKRRKGG 949

Query: 604  VNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQE-ASNMAKKRRRPQT 662
            +NRTRSVKA VEDAKLFLG+S E           ++S+GIS+HT++ ASN+ +KR R   
Sbjct: 950  LNRTRSVKAVVEDAKLFLGKSAEEPEY-----ISDESRGISTHTEKLASNIPRKRERT-- 1002

Query: 663  SKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALE 722
                +SE++  DSEG+SDSVT GG R++R   V T+  TPG++RYNLRRHK      AL 
Sbjct: 1003 --PAESEQNAGDSEGFSDSVTTGGRRKRRQMVVPTI--TPGQKRYNLRRHKVDQ---ALS 1055

Query: 723  ASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDR 782
             S    K  +  ++  +  E +  P++ S     V +E  KST LV+             
Sbjct: 1056 GSV---KTGEKESDGGDAAEPIPKPETVSALSLGVASETEKSTDLVKF------------ 1100

Query: 783  AVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRV---LEDEEDDDDDS 839
                 ST N+ D+ ADA KS+E T LSEEVN TSEY  EDENG  +    +++ DDDD+S
Sbjct: 1101 -----STENVNDQ-ADATKSVEITELSEEVNDTSEYGVEDENGSTIHEDTQEDCDDDDES 1154

Query: 840  DHPGEASIGKKLWNFFTS 857
            +HPGE SIGKK+W FFT+
Sbjct: 1155 EHPGEVSIGKKIWTFFTT 1172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502495|ref|XP_003520054.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 377/869 (43%), Positives = 581/869 (66%), Gaps = 54/869 (6%)

Query: 17   IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
            I+KLL +Q+A LD K Q+ ELE+E+K+KS+ EE  SK  AL+Q+E E++HRE+K+ + EQ
Sbjct: 368  IEKLLGEQKATLDLKLQQVELEMEQKQKSLVEEFSSKEEALEQREVEVNHREKKVGKEEQ 427

Query: 77   ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 136
            AL+KK++R+KE+  ++ A+LKS+KE+EK +  +EK+LE EKQ+L+AD+ESL+ L  E+++
Sbjct: 428  ALNKKAERIKEQNKEIEAKLKSLKEKEKTMIIKEKELEKEKQQLLADRESLENLNAELEK 487

Query: 137  IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
            +++E +Q+ELQI +E + LK+ E++++E  RLQ +LKQ+IE  R Q++ ++KE E+L+++
Sbjct: 488  MKAEISQKELQICQETENLKLTEDDRAEHSRLQLELKQEIEHTRLQKDFIMKEAENLREE 547

Query: 197  REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
            R++FEKEWEVLDEKR EI  +Q  I  EK+ L K Q+S EERLK E+  M+D++++E+E 
Sbjct: 548  RQRFEKEWEVLDEKRAEITNKQHGIDMEKESLRKFQNSEEERLKSEKQHMQDHIKKELEM 607

Query: 257  IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316
            +  +KE+F  +M+ E+ +LSEK KN++ +ML++FE++  N E E+  R+++MEK+LQER 
Sbjct: 608  LESEKESFRDSMKQEKHLLSEKVKNEKAQMLQDFELKMRNLENEIQKRQEEMEKDLQERE 667

Query: 317  RTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
            R F+E+ +R L++I +LK+V E E +E+K+E  +LE E+  ++ N+++L+  Q  M +D 
Sbjct: 668  RNFQEEMQRELDNINNLKDVTEKEWEEVKAEGIRLENERKVLESNKQQLKSGQHEMHEDS 727

Query: 377  DELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDI 436
            + L  L R++  +RE+   E++ FLE VEK  SCK CGE++R FV+S++QLPD + R  I
Sbjct: 728  EMLMNLSRKVKKERERLVAERKHFLELVEKLRSCKGCGEVVRDFVVSDIQLPDFKERVAI 787

Query: 437  P---LPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSIS 493
            P    P + +    N Q ++AA  + NIS S              +SWLRKCT+KIF++S
Sbjct: 788  PSPISPVLNDNPPKNSQDNIAAS-EFNISGSVKP-----------VSWLRKCTTKIFNLS 835

Query: 494  PIKKSEHISTSMLEEEEPQSAVP-TIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSF---- 548
            P K+++ +    +    P S V  ++     E P  L +   IG  +  DE Q +     
Sbjct: 836  PSKRADAVGALDMPGTSPLSDVNFSVENIDEELPTSLPN---IGARVIFDERQPAGGMAH 892

Query: 549  ------RLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKS 602
                   L +D+  +E+ DEY+ SV  HS +DS V+    DSQQS  + G+R+PGRK KS
Sbjct: 893  HSSDTPHLQSDNIGKEVGDEYSLSVGDHSRVDSFVDGDPGDSQQSVPKLGRRKPGRKSKS 952

Query: 603  GVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQA------HEDSQGISSHTQEA-SNMAK 655
            G+ RTRSVKA VE+AK FLG++P+    NAS Q+       EDS+  SSHT++A  N  +
Sbjct: 953  GIARTRSVKAVVEEAKEFLGKAPKKIE-NASLQSLNTDHIREDSREDSSHTEKAIGNTRR 1011

Query: 656  KRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTS 715
            KR+R QTS+ T+SE++  DSEG SDS+TA GGRRK+ QTVA ++Q  GE+RYNLRRHK +
Sbjct: 1012 KRQRAQTSRITESEQNAGDSEGQSDSITA-GGRRKKRQTVAPLTQVTGEKRYNLRRHKIA 1070

Query: 716  SAVLALEASADLSKANKTVAE--VTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSV 773
                   ++ ++S A K+V +      +E   N         AV ++N + T+LVQV++V
Sbjct: 1071 GKD---SSTQNISNATKSVEKEAAAGKLEGDKNTPEVVETSLAVDDDNVQDTNLVQVSTV 1127

Query: 774  KSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRV----- 828
            K++E S  RAVRF+   ++VD+NA A +++ N V   E NGT EY DED  G  +     
Sbjct: 1128 KTVEFSDHRAVRFELPKDVVDDNAAATETL-NRV---EENGTPEYQDED--GSTIHEVEN 1181

Query: 829  LEDEEDDDDDSDHPGEASIGKKLWNFFTS 857
             +D+E+++++ +HPGE SIGKK++ FFT+
Sbjct: 1182 DDDDEEEEEEEEHPGEVSIGKKIFRFFTT 1210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101667|ref|XP_002312375.1| predicted protein [Populus trichocarpa] gi|222852195|gb|EEE89742.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 348/702 (49%), Positives = 478/702 (68%), Gaps = 55/702 (7%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VE+Q+LLD+ R ILDAK QE +LEL EKRK++EEE+RSK   +   E EI HREEKL +
Sbjct: 359  RVEVQELLDEHRTILDAKIQEADLELTEKRKNLEEELRSKADGVRLLETEIFHREEKLGK 418

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            RE ALD+KSDR+K+KE DL A+LK VKE++K +KAE+K+LEL+K++L++D+ S+Q+L+ +
Sbjct: 419  RELALDRKSDRMKDKEKDLDAKLKVVKEKDKSMKAEQKQLELQKKQLLSDEVSVQLLEDD 478

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
             +++ +E AQQELQI EE + +KI   E+ E LRLQ++LKQ++E  R Q E LLKE E+L
Sbjct: 479  CEKLRAEIAQQELQIGEESESIKITNNERLEYLRLQAELKQELEKCRRQAEFLLKEAEEL 538

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q+RE+ EKE EVL+EKR +INKEQ+ I +E+++LEK++++  E LKKEE  M++Y QRE
Sbjct: 539  EQERERSEKEREVLEEKRAQINKEQKDIVEERERLEKMKYAGGESLKKEENDMQEYAQRE 598

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +EAIRL+KE+FEA  RHEQLVLSEKA+N   +M+++FE +R N E  L+NR+++MEK L+
Sbjct: 599  LEAIRLEKESFEARKRHEQLVLSEKAENVHIQMVQDFESERCNFETGLINRQEEMEKALR 658

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
             R R FE  +ER LN I +LKEVA  E +EI+SER  ++KE+ EV  N+EKL+EQQ G++
Sbjct: 659  GRERAFEVLKERELNTINNLKEVARREREEIESERRAMDKERQEVVKNKEKLEEQQYGIK 718

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            KDIDEL +L  +L   REQ  RE+  FL FVEKH SC NCG++ R FV+S+LQ P+ E R
Sbjct: 719  KDIDELGMLSNKLRKQREQVIRERNYFLSFVEKHKSCTNCGDVTREFVLSDLQPPEMEER 778

Query: 434  NDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGM--NLGRADSGGHMSWLRKCTSKIFS 491
              +P P++++    N +G   A   S+I N    +  +LG ++S G MSWLRKCTSKIFS
Sbjct: 779  ETLPSPKISDEFFRNNEGGADA---SDILNIKRPLSEDLG-SNSQGRMSWLRKCTSKIFS 834

Query: 492  ISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLV 551
            ISP +K +H+S    E   P S V   M+E+ EG    V K     SIP D+ Q SF   
Sbjct: 835  ISPTRKIQHVSAPAFEGGFPSSPVRADMEERVEGSA--VQKAITSSSIPVDQAQVSF--- 889

Query: 552  NDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVK 611
                       Y+ SVD  SYMDSK +D+ EDS+ SEL++ + +PGR++KSG  RT    
Sbjct: 890  --------GGGYSVSVDDQSYMDSKTQDLPEDSELSELKNRRHKPGRRQKSGPGRT---- 937

Query: 612  AAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKD 671
                        S E  G+N +               + S++A+KR+R      T+ E+D
Sbjct: 938  ------------SDESRGINVT---------------KKSDVARKRQRL----PTEREQD 966

Query: 672  GADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHK 713
              DSEG+S+SVT  GGRRKR Q VA    TPG++RYNLRRHK
Sbjct: 967  AGDSEGHSESVTT-GGRRKRQQIVAPEEPTPGQKRYNLRRHK 1007

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815441|emb|CAN74990.1| hypothetical protein VITISV_008657 [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 361/804 (44%), Positives = 533/804 (66%), Gaps = 51/804 (6%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VEIQKL+D+   ILDAK++EFELE+E+KRKS+EEE++SK+  ++++E E +H E K+ +
Sbjct: 333  RVEIQKLVDEHNIILDAKKREFELEIEQKRKSLEEELKSKVVEVEKKETEFNHMEAKVAK 392

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL+KK ++ KEKE +  ++ K++KE+EK ++AEEK LE EK+ ++ADKE L  LK  
Sbjct: 393  REQALEKKLEKFKEKEKEFESKSKALKEKEKSIRAEEKNLEAEKKHILADKEDLLSLKAV 452

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
             ++I  E  +Q+L++ EE ++L+I EEE+SE LRLQS+LKQ+IE YR ++E+LLKE EDL
Sbjct: 453  AEKIRVEIEEQKLKVHEEREQLEITEEERSEFLRLQSELKQEIEKYRLEKEVLLKEVEDL 512

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +  RE FE+EWEVLDEK  EI K+   ++++++KLEKL+HS EERLK E+ A +DY+QRE
Sbjct: 513  KLQRETFEREWEVLDEKXAEIEKDLIDVSEQREKLEKLKHSEEERLKTEKLATQDYIQRE 572

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
             E+++L KE+F A+M HEQ VLSEKA++++ +M+ +FE+ +   E ++ NR++++EK+LQ
Sbjct: 573  FESLKLAKESFAASMEHEQSVLSEKAQSEKSQMIHDFELLKRELETDIQNRQEELEKQLQ 632

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER + FEE+RER LN++ +L+EVA  E++E+K ER ++EKEK EV  N++ L E Q  MR
Sbjct: 633  EREKVFEEERERELNNVNYLREVARQEMEEVKLERLRIEKEKQEVAANKKHLDEHQFEMR 692

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQ-LPDDEA 432
            KDIDEL  L R+L   RE F +E+ERF+ FVE+  SCKNCGE+   FV+S+LQ LP+ E 
Sbjct: 693  KDIDELVSLSRKLKDQRELFSKERERFIAFVEQQKSCKNCGEITCEFVLSDLQPLPEIEN 752

Query: 433  RNDIPLPQVAERCL-GNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFS 491
                PLP++A+R   G+ QG++AA    NI  + G +  G   SGG +S+LRKCTSKIF+
Sbjct: 753  VEVPPLPRLADRYFKGSVQGNMAASERQNIEMTPGIVGSGSPTSGGTISFLRKCTSKIFN 812

Query: 492  ISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLV 551
            +SP KK E  +   L  E P+ +   I++            + +G +  EDEP+ SFR+ 
Sbjct: 813  LSPGKKIEVAAIQNL-TEAPEPSRQAIVE----------PSKRLGST--EDEPEPSFRIA 859

Query: 552  NDSTN----------REMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRK 601
            NDS +          +E++     S+D  S +DSK  ++ + SQ S+L+  +R+PG++ K
Sbjct: 860  NDSFDVQRIQSDNSIKEVEAGQDLSID-ESNIDSKALELQQHSQHSDLKGARRKPGKRSK 918

Query: 602  SGVNRTRSVKAAVEDAKLFLGES--------PEGAGLNASFQAH--EDSQGISSHTQEAS 651
              ++RTRSVKA V DAK  LGES        P G   N    AH  ++S+G SS   + +
Sbjct: 919  QRIHRTRSVKAVVRDAKAILGESLELSENEHPNG---NPEDSAHMNDESRGESSFADKGT 975

Query: 652  -NMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRR--KRHQTVATVSQTPGERRYN 708
                +KR+R  TS+T  SE+DG DSEG SDSV A   RR  KR Q V    QT G+ RYN
Sbjct: 976  PRNGRKRQRAYTSQTMVSEQDGDDSEGRSDSVMA---RRQGKRRQKVPPAVQTLGQERYN 1032

Query: 709  LRRHKTSSAVLALEASADLSKANKTVAE---VTNPVEVVSNPKSASTFPPAVLNENGKST 765
            LRR K +  V A ++S +L K  +T  +        E + +  +A      +++ENG ST
Sbjct: 1033 LRRPKNTVTVAAAKSSTNLHKRKETETDGSGAGGTGEEIPDCNAAPATSVGLISENGGST 1092

Query: 766  HLVQVTSVKSM---ELSRDRAVRF 786
            H++QV + +++       D+ VR+
Sbjct: 1093 HVLQVETFETIVDVHFPSDKVVRW 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526609|ref|XP_003531909.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 2 [Glycine max]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 369/894 (41%), Positives = 549/894 (61%), Gaps = 94/894 (10%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VE+QKLLD+  AILD K+QEFE+EL+EKRKS E+ +++K+  ++++E EI+H EEK+ +
Sbjct: 341  KVEMQKLLDEHNAILDVKKQEFEVELDEKRKSFEDGLKNKLVEVEKKEAEITHMEEKVAK 400

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL KK++++KEKE +   ++K+++E+EK +K+EEK L  EK K+ +++E L   K E
Sbjct: 401  REQALGKKAEKLKEKEIEYEQKVKALREKEKLIKSEEKSLVTEKGKIESEREELLTHKAE 460

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I + N ++ L+I EE  +LK+ EEE+SE LRLQSQLK +++ YRHQ+ELLLKE EDL
Sbjct: 461  VEKIRANNEEESLRINEEIDRLKVTEEERSEYLRLQSQLKHEVDQYRHQKELLLKEAEDL 520

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q +E FE+EW+ LD KR ++ KE + +  +K+++ KLQ   EE+L+ E+   + YVQRE
Sbjct: 521  RQQKETFEREWDELDLKRTDVEKELKSVIQQKEEILKLQQYEEEKLRNEKQDTQAYVQRE 580

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +E ++L KE+F A M  E+  L+EKA+++R ++L +FE+Q+   EA++ N+ ++ EK+L 
Sbjct: 581  LETLKLAKESFAAEMELEKSSLAEKAQSERNQILLDFELQKKELEADMQNQLEQKEKDLI 640

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER + FEEKRE  LN+I  L+EVA  E+ E+K +R +LEKEK E   N++ L+ Q++ M+
Sbjct: 641  ERKKLFEEKRESELNNINFLREVANREMDEMKLQRSKLEKEKQEADENKKHLERQRMEMQ 700

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            +DID L  L R+L   REQF  E+ RF+EFVEK  SC+NCGEM+  FV+S+LQ   D   
Sbjct: 701  EDIDVLVDLNRKLKNQREQFIVERRRFIEFVEKLRSCQNCGEMISEFVLSDLQSSVDIEN 760

Query: 434  NDIP-LPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRAD------SGGHMSWLRKCT 486
             ++P LP++A          V    + N+++S     L  A       SGG +SWLRKCT
Sbjct: 761  LEVPSLPKLAADI-------VQGVSNENLASSRQNTGLSPATDPKSPVSGGTVSWLRKCT 813

Query: 487  SKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKA---EGPGVLVSKEAIGYSIP--E 541
            SKIF ISPI+K E   +  L +      V T+  E+    + PG           IP  E
Sbjct: 814  SKIFKISPIRKIESEDSGTLRD------VVTLSVEQTNVEDSPG----------RIPDAE 857

Query: 542  DEPQSSFRLVNDSTNR----------EMDDEYAPSVDGHSYMDSKV-EDV-AEDSQQSEL 589
            +E + SF +VNDS +           E++ ++ PSV+  + +DSK  ED+ A DS+  + 
Sbjct: 858  NEAELSFAVVNDSFDARRVQSGNDIIEVEADHDPSVENLNNVDSKAPEDLQAPDSKVGQQ 917

Query: 590  RSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAH---------EDS 640
            +S ++  GR R   V RT +VKA +++A+  LGES E A    S   H         EDS
Sbjct: 918  KS-RKGGGRPR---VKRTHTVKAVIKEARDILGESAE-ALPGESVDDHETEFPNGNAEDS 972

Query: 641  QGISSHTQEASNM-----AKKRRRPQT-SKTTQSEKDGADSEGYSDSVTAGGGRRKRHQT 694
              ++S +Q+  N       +KR R QT S+ + S  DG  +EG+SDS+  G  +R+R + 
Sbjct: 973  ANVNSESQKPYNRRIPANVRKRNRVQTSSQISVSGHDGDANEGHSDSLIPGQRKRRRQKA 1032

Query: 695  VATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKT-VAEVTNPVEVVSNPKSASTF 753
             A  +QT GE RYNLRR KT +   +  A +   K ++  V  V +  E + + K++ + 
Sbjct: 1033 AAPPAQTAGESRYNLRRLKTGATTSSARAMSGGGKESQGEVDRVKDTEEGIIDSKTSHSH 1092

Query: 754  PPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVN 813
               + NENG+S HL Q  S+K +E    RA     TT              N  LSEEVN
Sbjct: 1093 SVGITNENGESIHLEQ--SLKGVET---RAGYGGDTTETF---------ANNMALSEEVN 1138

Query: 814  GTSEYVDED----------ENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS 857
            GT++ V+E+          E+ G V  D EDD++D   PGEASIGKKLWNFFT+
Sbjct: 1139 GTADDVEENDAEYRSESRGEDAGGV--DNEDDEEDYLQPGEASIGKKLWNFFTT 1190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526607|ref|XP_003531908.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 1 [Glycine max]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 369/894 (41%), Positives = 549/894 (61%), Gaps = 94/894 (10%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VE+QKLLD+  AILD K+QEFE+EL+EKRKS E+ +++K+  ++++E EI+H EEK+ +
Sbjct: 342  KVEMQKLLDEHNAILDVKKQEFEVELDEKRKSFEDGLKNKLVEVEKKEAEITHMEEKVAK 401

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL KK++++KEKE +   ++K+++E+EK +K+EEK L  EK K+ +++E L   K E
Sbjct: 402  REQALGKKAEKLKEKEIEYEQKVKALREKEKLIKSEEKSLVTEKGKIESEREELLTHKAE 461

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I + N ++ L+I EE  +LK+ EEE+SE LRLQSQLK +++ YRHQ+ELLLKE EDL
Sbjct: 462  VEKIRANNEEESLRINEEIDRLKVTEEERSEYLRLQSQLKHEVDQYRHQKELLLKEAEDL 521

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q +E FE+EW+ LD KR ++ KE + +  +K+++ KLQ   EE+L+ E+   + YVQRE
Sbjct: 522  RQQKETFEREWDELDLKRTDVEKELKSVIQQKEEILKLQQYEEEKLRNEKQDTQAYVQRE 581

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +E ++L KE+F A M  E+  L+EKA+++R ++L +FE+Q+   EA++ N+ ++ EK+L 
Sbjct: 582  LETLKLAKESFAAEMELEKSSLAEKAQSERNQILLDFELQKKELEADMQNQLEQKEKDLI 641

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER + FEEKRE  LN+I  L+EVA  E+ E+K +R +LEKEK E   N++ L+ Q++ M+
Sbjct: 642  ERKKLFEEKRESELNNINFLREVANREMDEMKLQRSKLEKEKQEADENKKHLERQRMEMQ 701

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            +DID L  L R+L   REQF  E+ RF+EFVEK  SC+NCGEM+  FV+S+LQ   D   
Sbjct: 702  EDIDVLVDLNRKLKNQREQFIVERRRFIEFVEKLRSCQNCGEMISEFVLSDLQSSVDIEN 761

Query: 434  NDIP-LPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRAD------SGGHMSWLRKCT 486
             ++P LP++A          V    + N+++S     L  A       SGG +SWLRKCT
Sbjct: 762  LEVPSLPKLAADI-------VQGVSNENLASSRQNTGLSPATDPKSPVSGGTVSWLRKCT 814

Query: 487  SKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKA---EGPGVLVSKEAIGYSIP--E 541
            SKIF ISPI+K E   +  L +      V T+  E+    + PG           IP  E
Sbjct: 815  SKIFKISPIRKIESEDSGTLRD------VVTLSVEQTNVEDSPG----------RIPDAE 858

Query: 542  DEPQSSFRLVNDSTNR----------EMDDEYAPSVDGHSYMDSKV-EDV-AEDSQQSEL 589
            +E + SF +VNDS +           E++ ++ PSV+  + +DSK  ED+ A DS+  + 
Sbjct: 859  NEAELSFAVVNDSFDARRVQSGNDIIEVEADHDPSVENLNNVDSKAPEDLQAPDSKVGQQ 918

Query: 590  RSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAH---------EDS 640
            +S ++  GR R   V RT +VKA +++A+  LGES E A    S   H         EDS
Sbjct: 919  KS-RKGGGRPR---VKRTHTVKAVIKEARDILGESAE-ALPGESVDDHETEFPNGNAEDS 973

Query: 641  QGISSHTQEASNM-----AKKRRRPQT-SKTTQSEKDGADSEGYSDSVTAGGGRRKRHQT 694
              ++S +Q+  N       +KR R QT S+ + S  DG  +EG+SDS+  G  +R+R + 
Sbjct: 974  ANVNSESQKPYNRRIPANVRKRNRVQTSSQISVSGHDGDANEGHSDSLIPGQRKRRRQKA 1033

Query: 695  VATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKT-VAEVTNPVEVVSNPKSASTF 753
             A  +QT GE RYNLRR KT +   +  A +   K ++  V  V +  E + + K++ + 
Sbjct: 1034 AAPPAQTAGESRYNLRRLKTGATTSSARAMSGGGKESQGEVDRVKDTEEGIIDSKTSHSH 1093

Query: 754  PPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVN 813
               + NENG+S HL Q  S+K +E    RA     TT              N  LSEEVN
Sbjct: 1094 SVGITNENGESIHLEQ--SLKGVET---RAGYGGDTTETF---------ANNMALSEEVN 1139

Query: 814  GTSEYVDED----------ENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS 857
            GT++ V+E+          E+ G V  D EDD++D   PGEASIGKKLWNFFT+
Sbjct: 1140 GTADDVEENDAEYRSESRGEDAGGV--DNEDDEEDYLQPGEASIGKKLWNFFTT 1191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568883|ref|XP_003552637.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 373/898 (41%), Positives = 546/898 (60%), Gaps = 102/898 (11%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VE+QKLLD+Q  ILD K+QEFE+EL+EKRKS E+ +++K+  ++++E EI+H EEK+ +
Sbjct: 342  KVEMQKLLDEQNTILDVKKQEFEVELDEKRKSFEDGLKNKLVEVEKKEAEITHAEEKVVK 401

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL KK++++KEKE +   ++K++KE+EK +K+EEK LE EK+K+ +++E L   K E
Sbjct: 402  REQALGKKAEKLKEKEIEYEQKVKALKEKEKLIKSEEKSLETEKRKIESEREELLTHKAE 461

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I + N ++ L+I EE  +LK+ EEE+SE LRLQSQLK +++ YRHQ+ELLLKE EDL
Sbjct: 462  VEKIRANNEEELLRINEEIDRLKVTEEERSEYLRLQSQLKHEVDQYRHQKELLLKEAEDL 521

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q +E FE+EW+ LD KR ++ KE + +  +K++L KLQ   EE+LK E+   + YVQRE
Sbjct: 522  RQQKETFEREWDELDLKRTDVEKELKSVVQQKEELLKLQQYEEEKLKNEKQDTQAYVQRE 581

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
            +E ++L KE+F A M  E+  L+EKA ++R +ML +FE+Q+   EA++ N+ ++ EK+L 
Sbjct: 582  LETLKLAKESFAAEMELEKSSLAEKALSERNQMLLDFELQKKELEADMHNQLEQKEKDLI 641

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            ER + FEEKRE  LN+I  L+EVA  E+ E+K +R + EKEK E   N++ L+ Q++ M+
Sbjct: 642  ERKKLFEEKRESELNNINFLREVANREMDEMKLQRSKSEKEKQEADENKKHLERQRMEMQ 701

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            +DID L  L R+L   RE+F  E+ RF+EFVEK  SC+NCGEM+  FV+S+LQ   D   
Sbjct: 702  EDIDVLVDLNRKLKNQREEFIVERRRFIEFVEKLRSCQNCGEMISEFVLSDLQSSVDIEN 761

Query: 434  NDIPL-PQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRAD------SGGHMSWLRKCT 486
             ++P  P++A          V    + N+++S     +  A       SGG +SWLRKCT
Sbjct: 762  LEVPSHPKLAADI-------VQGVSNENLASSRQNTGVSPATDPKSPVSGGTVSWLRKCT 814

Query: 487  SKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKA---EGPGVLVSKEAIGYSIP--E 541
            SKIF ISPI+K E   +  L +      V T+  EK    + PG           IP  E
Sbjct: 815  SKIFKISPIRKIESEDSGTLRD------VVTLSVEKTNVEDSPG----------RIPDAE 858

Query: 542  DEPQSSFRLVNDSTN----------REMDDEYAPSVDGHSYMDSKV-EDV-AEDSQQSEL 589
            +E + SF +VNDS +           E++ ++ PSV+  + +DSK  ED+ A DS+  + 
Sbjct: 859  NEAELSFAVVNDSFDVQRVQSGNDIVEVEADHEPSVENLNNVDSKAPEDLQAPDSKVGQQ 918

Query: 590  RSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAH---------EDS 640
            +S ++  GR R   V RT +VKA +++A+  LGES E A    S   H         EDS
Sbjct: 919  KS-RKGGGRPR---VKRTHTVKAVIKEARGILGESAE-ALPGESVDDHENEFPNGNAEDS 973

Query: 641  QGISSHTQEASNM-----AKKRRRPQT-SKTTQSEKDGADSEGYSDSVTAGGGRRKRHQT 694
              ++S +Q+ SN       +KR R QT S+ T S   G  SEG+SDS+  G  +R+R + 
Sbjct: 974  ANVNSESQKPSNRRIPANVRKRNRVQTSSQMTVSGHGGDASEGHSDSLIPGQRKRRRQKA 1033

Query: 695  VATVSQTPGERRYNLRRHK---TSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSAS 751
             A  +QT GE RYNLRR K   T+S+V A+      S+    V  V +  E + + K++ 
Sbjct: 1034 AAPPAQTAGESRYNLRRPKIGATTSSVRAMSGGGKESQGE--VDRVKDTGEGIVDSKTSH 1091

Query: 752  TFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEE 811
            +    + NENG S HL Q  S+K  E +RD    +   T            + N  LSEE
Sbjct: 1092 SHSVGITNENGGSIHLEQ--SLKGAE-TRD---GYGGDT--------IGTFVNNMALSEE 1137

Query: 812  VNGTSEYVD------------EDENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS 857
            VNGT++ V+            ED  GG     E +DD+D   PGEASIGKKLWNFFT+
Sbjct: 1138 VNGTADDVEENDAEYRSESHGEDAAGGV----ENEDDEDYLQPGEASIGKKLWNFFTT 1191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525632|ref|XP_004169820.1| PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 353/885 (39%), Positives = 531/885 (60%), Gaps = 80/885 (9%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VEIQKLLD+  AILDAK+ EFELE+++KRKS++EE++SK+S ++++E EI H EEK+ +
Sbjct: 359  KVEIQKLLDEHNAILDAKKIEFELEIDQKRKSLDEELKSKVSEVEKKEAEIKHMEEKVGK 418

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            REQAL+K++++ KEKE D  A+ K++K+REK +K EEK LE EK++L+AD E L  LK E
Sbjct: 419  REQALEKRTEKFKEKEGDYDAKFKALKQREKSLKLEEKNLEAEKKQLLADTEELISLKAE 478

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +++I +EN  Q L++ EE + LK++E E+S+ LRLQS+LKQ+IE YR Q+ELLLKE EDL
Sbjct: 479  VEKIRAENEAQLLKLHEERESLKVSETERSDFLRLQSELKQEIEKYRQQKELLLKEAEDL 538

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            +Q +E FE+EWE LDEKR ++ KEQ+ +  +K++ EK   S EERLK E      Y+ RE
Sbjct: 539  KQQKETFEREWEELDEKRAQVEKEQKTLLLQKEEFEKRIFSEEERLKSERLETEAYIHRE 598

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
             E ++L +E+F A+M HE+  ++EKA++DR +M+ +F++Q+   E+ + NR ++ME+  +
Sbjct: 599  QENLKLAQESFAASMEHEKSAIAEKAQSDRSQMMHDFDLQKRELESAMQNRVEEMERGFR 658

Query: 314  ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
            E+ + F+E++ER L +I  L++VA  E+ E+K ER + EKE+ E + N+E L+ Q++ +R
Sbjct: 659  EKDKLFKEEKERELENIKFLRDVARREMDELKLERLKTEKERQEAEANKEHLERQRIEIR 718

Query: 374  KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
            KDI+EL  L  +L   RE+   E++RF+ +V+KH +CKNCGE+   FV+S+LQ  D    
Sbjct: 719  KDIEELLELSNKLKDQRERLVAERDRFISYVDKHVTCKNCGEIASEFVLSDLQYLDGFEN 778

Query: 434  NDI-PLPQVAERCLGNRQGDVAAPYDSNISN------SHGGMNLGRADSGGHMSWLRKCT 486
             D+  LP + ++ +  +   V+   +  IS+      + GG       S G +SWLRKCT
Sbjct: 779  ADVLNLPGLPDKYMEIQGLQVSPGGNLGISDVKNGELTPGGAGQKSPISAGTISWLRKCT 838

Query: 487  SKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQS 546
            SKIF  SP KK   I +   E+++ ++ V     + AE    +        S+ EDE + 
Sbjct: 839  SKIFKFSPGKK---IVSPAFEKQDDEAPVSDEHDDLAEPSKRM--------SVGEDEVEL 887

Query: 547  SFRLVNDS----------TNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRP 596
            S  + +DS          + R+++     S+D  S + SK  +VA DSQ S++R  K RP
Sbjct: 888  SLAIASDSLDDRRIQSDVSGRDVEPSQNLSIDNQSNIVSKAPEVAVDSQPSDVREIKXRP 947

Query: 597  GRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAH------EDSQGISSHTQEA 650
             R  K  +NRTRSVKA VEDAK  +GE      L  + QA       EDS  +++ +++ 
Sbjct: 948  KRG-KPKINRTRSVKAVVEDAKAIIGE------LQPTQQAEYPNGNAEDSSQLNNESRDE 1000

Query: 651  SNMA--------KKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTP 702
            S++A        +KR R  +S+    E D  DSE  S SV  G   RKR Q  A   + P
Sbjct: 1001 SSLAGKGTQRNLRKRTRANSSQIM-GENDHDDSEVRSGSVVEGQP-RKRRQRAAPAVRAP 1058

Query: 703  GERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENG 762
             E+RYNLRR      V A +  +++SK ++ V  V    E V   K   T    V ++N 
Sbjct: 1059 -EKRYNLRRK----VVGASKEPSNISKEHEEVGTVNRREEDVHYSKVRPTPSMGVASDNA 1113

Query: 763  KSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDED 822
             S HLV+  +V+    ++D  V    T+ I         SI+    SEEVNG+ E   + 
Sbjct: 1114 GSAHLVRCGTVQD---NQDDGV--AGTSKI---------SIDMVSQSEEVNGSPENAGKY 1159

Query: 823  ENGGRVLEDEEDDDDD----------SDHPGEASIGKKLWNFFTS 857
            E+ G    +  ++  +          S HPGE SIGKKLW FFT+
Sbjct: 1160 EDHGEYRSESCEEVGNEDDDDDEEEESAHPGEVSIGKKLWTFFTT 1204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	857
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.637	0.484	0.392	1.9e-104
TAIR|locus:2019529	1132	LINC1 "AT1G67230" [Arabidopsis	0.801	0.606	0.312	6.4e-83
TAIR|locus:2012423	1085	LINC3 "LITTLE NUCLEI3" [Arabid	0.442	0.349	0.370	1.8e-80
TAIR|locus:2169950	1042	LINC4 "LITTLE NUCLEI4" [Arabid	0.711	0.585	0.217	2.9e-34
ZFIN|ZDB-GENE-030616-583	1376	acin1a "apoptotic chromatin co	0.388	0.242	0.280	2.3e-20
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.387	0.233	0.266	3.7e-19
DICTYBASE|DDB_G0288069	1082	DDB_G0288069 [Dictyostelium di	0.373	0.295	0.246	8.8e-17
DICTYBASE|DDB_G0295683	1589	DDB_G0295683 "cofilin/tropomyo	0.375	0.202	0.266	5.6e-16
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.397	0.223	0.261	7.1e-16
DICTYBASE|DDB_G0285911	1061	DDB_G0285911 "LIM-type zinc fi	0.399	0.322	0.236	4.1e-15

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
 Identities = 219/558 (39%), Positives = 316/558 (56%)

Query:    16 EIQKLLDDQRAILDAXXXXXXXXXXXXXXXXXXXXXXKISALDQQEFEISHREEKLERRE 75
             EIQKL+DDQ+ +L +                      KI  L++Q+ EI H EEKLE+R 
Sbjct:   370 EIQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLEKRN 429

Query:    76 QALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKESLQILKVEID 135
             QA++KK DRV EKE DL A+LK++KER                  ++DKESL+ L+ EI+
Sbjct:   430 QAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIE 489

Query:   136 QIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195
             +I +E  ++E  I+EEC+ L+I +EE+ E LRLQS+LK QIE  R  +E L KE E+L+Q
Sbjct:   490 KIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFLSKEVENLKQ 549

Query:   196 DREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 255
             ++E+FEKEWE+LDEK+   NKE+ +I++EK+K E+ Q    ERLKKEE A+R  + +E++
Sbjct:   550 EKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESALRVQIMQELD 609

Query:   256 AIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQXX 315
              IRL +E+FEA M HE+  L EK K ++ K++++ EM R N E EL  R+++ EK+L   
Sbjct:   610 DIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIELQERKEQDEKDLLDR 669

Query:   316 XXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKD 375
                        L+DI H K+    E++E+ S+R  L+KE  E+  +++KL+EQQ+ M  D
Sbjct:   670 MAQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKHKDKLKEQQVEMHND 729

Query:   376 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLP-DDEARN 434
             I EL  L   L   RE F RE+ RFL FV+K   C +CG+++  FV+S+LQLP +DE   
Sbjct:   730 ISELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVNDFVLSDLQLPSNDEVAI 789

Query:   435 DIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGG-HMSWLRKCTXXXXXXX 493
                LP +    L +  G   A    NI  S  G   G   S    MS L+KCT       
Sbjct:   790 ---LPPIG--VLNDLPGSSNASDSCNIKKSLDGDASGSGGSRRPSMSILQKCTSIIFSPS 844

Query:   494 XXXXXEH-ISTSMLEEEEPQSAVPTIMQEKAEGP-GVLVSKEAIGYSIPEDEPQSSFRLV 551
                  EH I T    E+   S+V   M+ K E P  V +       SIPE++ + +   V
Sbjct:   845 KRV--EHGIDTGK-PEQRLSSSVAVGMETKGEKPLPVDLRLRPSSSSIPEEDEEYTDSRV 901

Query:   552 NDSTNREMDDEYAPSVDG 569
              +++      E+  S  G
Sbjct:   902 QETSEGSQLSEFQSSRRG 919

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 223/713 (31%), Positives = 365/713 (51%)

Query:    14 QVEIQKLLDDQRAILDAXXXXXXXXXXXXXXXXXXXXXXKISALDQQEFEISHREEKLER 73
             ++ +Q+L+D+ +A LD+                      K++ ++++E E  H EEK+ +
Sbjct:   335 KMAVQQLVDEHQAKLDSTQREFELEMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAK 394

Query:    74 REQALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKESLQILKVE 133
             REQALD+K ++ KEKEND   RLK +  R                  + DKE +  LK  
Sbjct:   395 REQALDRKLEKHKEKENDFDLRLKGISGREKALKSEEKALETEKKKLLEDKEIILNLKAL 454

Query:   134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
             ++++  EN  Q  +I +E  +L++ EEE+SE LRLQ++LK+QIE  R QQELL KE EDL
Sbjct:   455 VEKVSGENQAQLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDL 514

Query:   194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
             +  RE FEKEWE LDE++ +I  E + I D+K+KLE+  H  EERLKKE+ A  + ++RE
Sbjct:   515 KAQRESFEKEWEELDERKAKIGNELKNITDQKEKLERHIHLEEERLKKEKQAANENMERE 574

Query:   254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
             +E + + K +F  TM +E+ +LS+KA+++R ++L + EM++   E+++    ++ E+ELQ
Sbjct:   575 LETLEVAKASFAETMEYERSMLSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQ 634

Query:   314 XXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
                          L++I +L++VA  E+ ++++ER ++EKEK EV  ++  L+EQQ  +R
Sbjct:   635 AKKKLFEEEREKELSNINYLRDVARREMMDMQNERQRIEKEKLEVDSSKNHLEEQQTEIR 694

Query:   374 KDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433
             KD+D+L  L ++L   REQF  E+ RFL  +E + +C  CGE++     S L LP+ +  
Sbjct:   695 KDVDDLVALTKKLKEQREQFISERSRFLSSMESNRNCSRCGELL-----SELVLPEID-- 747

Query:   434 NDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTXXXXXXX 493
              ++ +P +++  L N   D  AP       S     LG   +GG +SW RKCT       
Sbjct:   748 -NLEMPNMSK--LANIL-DNEAPRQEMRDISPTAAGLGLPVTGGKVSWFRKCTSKMLKLS 803

Query:   494 XXXXXEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYS--IPEDEPQSSFRLV 551
                  E   T  L ++EPQS      Q    GP   V + A  YS  + + E ++  + V
Sbjct:   804 PIKMTEPSVTWNLADQEPQSTE----QANVGGPSTTV-QAATTYSFDVQKAESETGTKEV 858

Query:   552 NDSTNREMD-DEYAPSVDGHSYMDSKVEDVAEDSQQSELXXXXXXXXXXXXXXVNRTRSV 610
              + TN   D D+   +          + ++  D Q S +               +     
Sbjct:   859 -EVTNVNSDGDQSDINSKAQEVAADSLSNLDVDGQ-SRMKGKGKARTRRTRSVKDVVDDA 916

Query:   611 KAAV-EDAKLFL-GESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQS 668
             KA   E   L+   +S E   ++ S +A     G S      +   + R     + TT+ 
Sbjct:   917 KALYGESINLYEPNDSTEN--VDDSTKASTGETGRSDKAISKNGRKRGRVGSLRTCTTEQ 974

Query:   669 EKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLAL 721
             + + +D +  S +  A   +R++        +  G+R YNLRR +  +   AL
Sbjct:   975 DGNESDGKSDSVTGGAHQRKRRQKVASEQQGEVVGQR-YNLRRPRRVTGEPAL 1026

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006997 "nucleus organization" evidence=IGI;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.8e-80, Sum P(2) = 1.8e-80
 Identities = 148/399 (37%), Positives = 234/399 (58%)

Query:    14 QVEIQKLLDDQRAILDAXXXXXXXXXXXXXXXXXXXXXXKISALDQQEFEISHREEKLER 73
             Q+EI KLLDDQ+A+LD+                      K + ++Q + EISH+EEKL +
Sbjct:   346 QMEIGKLLDDQKAVLDSRRREFEMELEQMRRSLDEELEGKKAEIEQLQVEISHKEEKLAK 405

Query:    74 REQALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKESLQILKVE 133
             RE AL+KK + VK+KE DL ARLK+VKE+                  + DKE L+ LK E
Sbjct:   406 REAALEKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENERLLEDKECLRKLKDE 465

Query:   134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
             I++I +E  +QE +I+EE + L+I +EE+ E LRLQS+LKQQI+  + ++ELLLKE E+L
Sbjct:   466 IEEIGTETTKQESRIREEHESLRITKEERVEFLRLQSELKQQIDKVKQEEELLLKEREEL 525

Query:   194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
             +QD+E+FEKEWE LD+KR  I +EQ ++A+E +KL  LQ S + RLK+EE   RD ++RE
Sbjct:   526 KQDKERFEKEWEALDKKRANITREQNEVAEENEKLRNLQISEKHRLKREEMTSRDNLKRE 585

Query:   254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
             ++ +++ KE+FEA M  E L + ++  +   +  EE   +  N+ A    +R   ++EL 
Sbjct:   586 LDGVKMQKESFEADM--EDLEMQKRNLDMEFQRQEEAGERDFNERARTYEKRS--QEELD 641

Query:   314 XXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
                          + ++ + K   E E ++I S R +L KE+ E +++++ + E  + +R
Sbjct:   642 NINYTKKLAQRE-MEEMQYEKLALEREREQI-SVRKKLLKEQ-EAEMHKD-ITELDV-LR 696

Query:   374 KDIDEL--DILCRRLYGDREQFKREKERFLEFVEKHTSC 410
               + E   + +C     +RE+F      FLE ++  +SC
Sbjct:   697 SSLKEKRKEFIC-----ERERFLV----FLEKLKSCSSC 726

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0005654 "nucleoplasm" evidence=IDA

TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.9e-34, P = 2.9e-34
 Identities = 137/631 (21%), Positives = 265/631 (41%)

Query:    17 IQKLLDDQRAILDAXXXXXXXXXXXXXXXXXXXXXXKISALDQQEFEISHREEKLERREQ 76
             IQ +L +Q  IL                        K  A + +E +I  RE+ +  +E 
Sbjct:   375 IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query:    77 ALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKESLQILKVEIDQ 136
              L+ +S  + EKE D+  +  ++ E+                    +KE L+ L +E+ Q
Sbjct:   435 DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query:   137 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
               +    +  ++    QKL+  + E SEL  L+ +LK++++  R Q+  +L E + L+ +
Sbjct:   495 SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query:   197 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
             + KFE EWE +D KR+E+ KE E I  +++          + +K+E  A+R+  + ++E+
Sbjct:   555 KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query:   257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQXXX 316
             +  ++E F   M  E      K + +R   L   EMQ+   E  + N+R+++E   +   
Sbjct:   615 LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query:   317 XXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
                          I  LKE+AE E++ ++ E  +L+ E+ E+K++RE+ + +   ++  +
Sbjct:   675 KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query:   377 DELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDI 436
             +EL +   +L   R   + E++     +E+    +N    +    ++ +QL + E R+  
Sbjct:   735 EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE-RSWE 793

Query:   437 PLPQVAERCLGNRQGDVAAPYD-SNISNSHGGMNLGRADSGG-------HMSWLRKCTXX 488
              +  + ++ + +R  ++      S +SNS  G N       G         SW+++CT  
Sbjct:   794 KVSALKQKVV-SRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNL 852

Query:   489 XXXXX--XXXXXEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQS 546
                          H         E      +  +EKA   G+ ++ E +          S
Sbjct:   853 IFKTSPEKSTLMHHYEEEGGVPSEKLKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTS 912

Query:   547 SFRLVNDSTNR----EMDDEYAPSVDGHSYMDSKVEDVAEDSQQ---SELXXXXXXXXXX 599
                    S N+    ++  +Y+   D  S + S  ++V ED  +   S+           
Sbjct:   913 GDETSEPSNNKKRKHDVTQKYSDEADTQSVISSP-QNVPEDKHELPSSQTQTPSGMVVIS 971

Query:   600 XXXXVNR-TRSVKAAVEDAKLFLGESPEGAG 629
                 + R T   +   +   L   ESP  AG
Sbjct:   972 ETVKITRVTCETEVTNKVTTLDCSESPSEAG 1002

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0006997 "nucleus organization" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 100/357 (28%), Positives = 185/357 (51%)

Query:    56 ALDQQEFEISHREEKLERREQALDKKS---DRVKEKENDLAARLKSVKERXXXXXXXXXX 112
             AL+++  E    E++ + RE+AL+K+    +R++++  +  A L+  +ER          
Sbjct:   515 ALERERLERERLEKERQEREEALEKERLERERLEKERREKEAALE--RERLEKERLEKEK 572

Query:   113 XXXXXXXXIADKESLQILKVEIDQIESENAQQELQIQEE-CQKLKINEEEKSELLRLQSQ 171
                       ++E L+  ++E ++ E E A +  ++++E  +K K  +EE  E  RL+ +
Sbjct:   573 KEKEAAL---ERERLEKERIEKEKREKEEALERERLEKERLEKEKREKEEAQERERLKKE 629

Query:   172 LKQQIETYRHQQELLLKEHEDLQQ-DREKFEKEWEVLDEKRDE---INKEQ-EKIADEKK 226
               ++ +    ++E L KE ++ +  +RE+ EKE  +  EKR++   + +E+ EK   EK+
Sbjct:   630 RLEKEKKEALEKERLEKERQEKEAVERERLEKE-RLEKEKREKEAALERERLEKERIEKE 688

Query:   227 KLEKLQHSAEERLKKEECAMRDYVQRE-IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 285
             K EK +    ERL+KE        + E +E  RL+KE  E   R E+ VL E+ + ++ +
Sbjct:   689 KREKEEALERERLEKERLEKEKREKEEALERERLEKERLEKE-RQEKEVL-ERERLEKER 746

Query:   286 MLEEFEMQRMNQEAELLNRRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIK 345
             + +E + Q    E E L + +K+EKE Q             L      KE  E  ++  +
Sbjct:   747 LEKERKEQEEALERERLEK-EKLEKEKQEQALERERLEKERLEK--ERKE-QEKALERER 802

Query:   346 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 402
              E+++LEKEK E  + RE+L++++L   K+  E + L R      E+ K+E+E+ LE
Sbjct:   803 LEKEKLEKEKQEQALERERLEKERL--EKERKEQETLEREKLEKLEKEKQEREQALE 857

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
 Identities = 96/360 (26%), Positives = 185/360 (51%)

Query:    59 QQEFEISHREEKLE---RREQALD--KKSDRVKEKENDLAARLKSVKERXXXXXXXXXXX 113
             +QE E   +E+++E   RR Q L+  K+ DR++ KE ++A RLK  KE            
Sbjct:   604 EQEMERIRKEKEMEEERRRIQELERQKEEDRLR-KEREIA-RLKKEKEMEEERRRIQELE 661

Query:   114 XXXXXXXIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLK 173
                    +  ++ ++ +K E +  E     QEL+ Q+E ++L+  +E + E +R + +++
Sbjct:   662 RQKEEERLRKEQEIERIKKEKEIEEKRQRIQELERQKEEERLR--KEREMERIRKEKEIE 719

Query:   174 QQIETYRHQQELLLKEHEDL--QQDREKFEKEWEVLDEKRD----EINKEQEKIADEKKK 227
             +  E  R Q+    KE E L  +Q+ E+ +KE E+ +E+R     E  KE+E++  E++ 
Sbjct:   720 E--ERLRIQELERQKEEERLRKEQEMERIKKEKEMEEERRRIQKLERQKEEERLRKEREM 777

Query:   228 LEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKML 287
              E+ Q   +   +KEE  +R   ++E+E  R   + FE   R E+ +  E+     RK  
Sbjct:   778 EEERQRIQQLERQKEEERIRK--EKELEEERRRIQEFER-QREEERLKKEREMERMRKEK 834

Query:   288 EEFEMQRMNQEAELLNRRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSE 347
             EE +M+R+ +E +L   R K++ EL+               +I  +++  E E++E +  
Sbjct:   835 EE-QMERLRKERDLEEERRKIQ-ELERQKEEERLRKE---REIERIRK--EKEMEEERRR 887

Query:   348 RDQLEKEKHEVKVNREK-LQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
                LE++K E ++ +E+ ++E++    ++++E     + L   +E+ +  KER +E V K
Sbjct:   888 IQDLERQKEEERLRKEREMKEERQRKEREMEEERRRIQELERQKEEERLRKEREIERVRK 947

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 8.8e-17, Sum P(3) = 8.8e-17
 Identities = 83/337 (24%), Positives = 170/337 (50%)

Query:    67 REEKLERREQALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKES 126
             R+E+ E+ E+ ++ +  R  E+E     + K  +ER                   AD+E 
Sbjct:   569 RKEEKEKEEKRIEMERQRKLEEEKKEQEKKKLEQEREAKLENERRLREEKKQKERADREE 628

Query:   127 LQILKVEIDQIESENAQQELQIQEE--CQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 184
              + L VE    E E  QQE +++E+    K+K +++EK E  +L+   K+++E  + + E
Sbjct:   629 KERLTVERLAKERELVQQERELKEKQLLDKIKKDKQEKLEKEKLE---KERLENEKLENE 685

Query:   185 LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 244
              L KE    + ++EK E E  + +E+ +    E E++ +E+ + E+L+   +ERL+KE  
Sbjct:   686 RLGKE----KLEKEKLENE-RLENERLENERLENERLENERLENERLE---KERLEKERL 737

Query:   245 AMRDYVQRE-IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 303
                + +++E +E  +L+KE  E     E+L+L ++ +   ++  EE E +   +E +   
Sbjct:   738 ENGEKLEKEKLEKEKLEKEELENKRNEEELLLKQQQQQKEKEEKEEKEKEEKEKEEKEKE 797

Query:   304 RRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEV-KVNR 362
              ++K   EL+             L  +   +E  + E++ I+ E+ +++ EK  + K N 
Sbjct:   798 EKEKERIELEKQKAEEEEEAEK-LRKLKEQEEEQKLELKRIRDEQKKIDDEKERIEKENI 856

Query:   363 EKLQEQQLGMRKD-IDELDILCRRLYGDREQFKREKE 398
             EK +++     K+ +++L    +RL+ ++E+  +E E
Sbjct:   857 EKEKQRIENQEKERLEKLQQEQQRLFDEQEKKSKEIE 893

GO:0005615 "extracellular space" evidence=IDA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
 Identities = 92/345 (26%), Positives = 175/345 (50%)

Query:    59 QQEFEISHREEKLERREQALDKKSD--RVKEKENDLAARLKSVKERXXXXXXXXXXXXXX 116
             QQ+ E  H+ E+  ++EQ   K+ D    K KE    + L+  KE+              
Sbjct:   509 QQQLE--HQLEEERKQEQKKKKELDDQEWKRKEQQYQSDLQLEKEKQSALELEREREIQS 566

Query:   117 XXXXIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 176
                  ++K+  Q +++EI Q E E  +Q LQ Q E +KLK+ EEE+ EL     + K+ +
Sbjct:   567 ILE--SEKQRQQQVELEIQQ-EKERTKQ-LQQQWEQEKLKL-EEERKEL-----ENKKSL 616

Query:   177 ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236
             E  + +QELL + ++ ++Q++   E+  +   +++D+  K Q+++A  + + E+ +   E
Sbjct:   617 EMAQKKQELL-ELNKKIEQEQRDLEERIQKEQKEKDQREK-QDQLAQMELEREREREKEE 674

Query:   237 ERLKKEECAMRDYVQREI-EAIRLDKEA-FEATMRHEQLVLSEKAKNDRRKMLEEFEMQR 294
             ++ K+++ A  +  +RE  E +  D++   E  +  E+ +  ++ + ++++  E+ E QR
Sbjct:   675 KKRKQQQLAQLEKEERERNEKLEKDRQLQLEQEIEKERKLKQQQKEKEQKEQKEKRE-QR 733

Query:   295 MNQEAELLNRRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKE 354
               +E E  +++DK EKE Q               +    KE  E E +E K ER+  E+E
Sbjct:   734 EKEEKEEKDKKDKEEKEKQELKKKQQQQQQQKEKEKQERKEKEEREERE-KEERE--ERE 790

Query:   355 KHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 399
             + E K    KL++Q+    +   EL +  ++   +RE+ K EK R
Sbjct:   791 EREEKERELKLKQQKKQKEEKEKELKLKQQKEQEEREE-KEEKLR 834

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 238 (88.8 bits), Expect = 7.1e-16, P = 7.1e-16
 Identities = 99/379 (26%), Positives = 185/379 (48%)

Query:    67 REEKLERREQALDKK--SDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIADK 124
             REE+ ++RE+  D+K   + +++ E+D A R+ S K                      + 
Sbjct:    62 REERRKKREE--DEKILKEEMEKLESDKANRITSPKTPTSGSSSIALSPSTSSYSISENS 119

Query:   125 ---ESLQILKVEIDQIESENAQQELQIQEECQKLKINEE---EKSELLRLQSQLKQQIET 178
                 S  +L  +    + E  ++  +++EE +KL++ ++   E+ E  + + +L+Q+ E 
Sbjct:   120 GGDSSTSLLSAQAISAKEEREKRRKELEEEAKKLELEQQKIREEREKRKEERRLQQE-EE 178

Query:   179 YRHQQELL-LKEHEDL----QQDREKFEKEWEVLDEKR--DEINKEQEKIAD--EKKKLE 229
              R  Q+LL  K+ E +    Q++ EK EKE +   EK   D+  KE++++AD  EK++ E
Sbjct:   179 QRKLQDLLDKKDSEKIEKLKQEENEKLEKEEKERIEKELTDKKEKEEKELADKLEKERQE 238

Query:   230 K-LQHSAE-ERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKML 287
             K L    E E+ +KEE  + D +++E    RLDKE  +   + E+ +  +  K  + K L
Sbjct:   239 KELADKLEKEKKEKEEKELADKLEKE----RLDKEKKD---KEEKELADKLEKESQEKEL 291

Query:   288 EEFEMQRMNQEAELLNR--RDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIK 345
              E ++++  + A+ L +  ++K EKE Q               +   L +  E E QE K
Sbjct:   292 AE-KLEKEKELADKLEKEQKEKEEKERQEKELADKLAKEQKEKEEKELADKLEKERQE-K 349

Query:   346 SERDQLEKEKHEV----KVNREKLQEQQLG-MRKDIDELDILCRRLYGDREQFKREKERF 400
                D+LEKEK E     K+ +EK +++ L  + K+  E ++  +     +E+ ++E++  
Sbjct:   350 ELADKLEKEKQEKELADKLEKEKQEKESLEKLEKEKQEKELADKLAKEQKEKEEKEEKEE 409

Query:   401 LEFVEKHTSCKNCGEMMRA 419
              E  EK    +   E+  A
Sbjct:   410 KEKQEKEEKERKDKELAAA 428

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

DICTYBASE|DDB_G0285911 DDB_G0285911 "LIM-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 86/364 (23%), Positives = 183/364 (50%)

Query:    57 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXX 116
             L+ Q  E   +EE+L+R ++ L+++  R   ++     +++  +++              
Sbjct:   256 LELQSREKREKEEQLKRDQEKLEREKKREYHQQQPQQTQIQIHQQKMLEKERLAQEEKER 315

Query:   117 XXXXIADKESLQILKVEIDQIESENAQQELQIQEEC--QKLKINEE--EKSELLRLQSQL 172
                 + ++E L   +VE ++ E E   +E + +E+   +K ++  E  EK    R++ + 
Sbjct:   316 LL--VEERERLNATRVEREKQEKERLDRERKEREQARLEKERLESERLEKERQARVERER 373

Query:   173 KQ--QIETYRHQQELLLKEHEDLQQDREKFEK-EWEVLDEKRDEINKEQEKIADEKKKLE 229
             K+  +IE  +  +E    E+E L+ +R K EK E E L+ +R E  + QE+I +E+ + E
Sbjct:   374 KEFERIEKEKRDREQTRLENERLENERLKKEKLEKERLENERFE-KERQERIENERLENE 432

Query:   230 KLQHSAEERLKKEECAMRDYV-QREIEAIRLDKEAFEATMRH--EQLVLSEKAKNDRRKM 286
             + +   +ERL+KE+    +   Q  +   + +KE  E   R   E+L   EK + +R++ 
Sbjct:   433 RFERERKERLEKEKIEKEERENQLRLAKEKEEKEEKERQERQLKERLERKEKLEKERKER 492

Query:   287 LEEFEMQRMNQEAELLNRRDKMEKE-LQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIK 345
              E+ E  R  +  +L  R D+  KE L+               +   +KE  E E +E +
Sbjct:   493 EEKEEKDRQ-ERLQLKERLDRERKERLEKERKEREEKDEKDRQERLQIKERLERERKE-R 550

Query:   346 SERDQLEKEKHE-VKVNREKLQEQQLGM-RKDIDELDILCRRLYGDREQFKREKERFLEF 403
              E+++LE E+ E ++  +EK ++++    R + ++L++  +    ++++ KRE++R  + 
Sbjct:   551 LEKERLEYERLETLRKEKEKERKEKFETARLEREKLELELK----EKDEKKREEKRLAKI 606

Query:   404 VEKH 407
             +E++
Sbjct:   607 IEEN 610

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	857
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-17
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-17
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-16
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-13
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-09
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-08
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-08
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-08
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-08
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-08
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	9e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-07
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	3e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-06
TIGR00606	1311	TIGR00606, rad50, rad50	3e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-06
COG0610	962	COG0610, COG0610, Type I site-specific restriction	8e-06
pfam13166	713	pfam13166, AAA_13, AAA domain	8e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	1e-05
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	1e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-05
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	3e-05
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-05
pfam06785	401	pfam06785, UPF0242, Uncharacterized protein family	7e-05
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	8e-05
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	8e-05
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	9e-05
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	9e-05
TIGR00606	1311	TIGR00606, rad50, rad50	1e-04
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	1e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-04
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	3e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	3e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	4e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	5e-04
pfam04156	186	pfam04156, IncA, IncA protein	6e-04
COG5281	833	COG5281, COG5281, Phage-related minor tail protein	6e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	7e-04
TIGR00606	1311	TIGR00606, rad50, rad50	8e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	8e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	9e-04
pfam04156	186	pfam04156, IncA, IncA protein	0.001
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.001
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.001
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.003
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.004
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.004
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 87.1 bits (216), Expect = 2e-17
 Identities = 70/335 (20%), Positives = 165/335 (49%), Gaps = 17/335 (5%)

Query: 21   LDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDK 80
            L+++   L  + +  E  LEE R+ +EE  R ++  L ++   +    E+L+ R + L++
Sbjct: 686  LEEELKSLKNELRSLEDLLEELRRQLEELER-QLEELKRELAALEEELEQLQSRLEELEE 744

Query: 81   KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI----------- 129
            + + ++E+  +L  RL+ ++E  + ++    KL+ E ++L   +++LQ            
Sbjct: 745  ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE 804

Query: 130  LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
             +  +D +E E    E + +   Q+++  EEE  EL     +L++++E    + E L +E
Sbjct: 805  AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Query: 190  HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 249
             E+L+ ++E+ E E + L+E+++E+ +E  ++  E  +L++      ERL+ E  A  + 
Sbjct: 865  LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE-ELEAKLER 923

Query: 250  VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKME 309
            ++ E+  +  + E         +L    +   +  + L    ++ + +  E+  R ++++
Sbjct: 924  LEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELK 983

Query: 310  KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEI 344
             + ++     EE +E++L  I  L +      +E 
Sbjct: 984  SQRED----LEEAKEKLLEVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 86.3 bits (214), Expect = 4e-17
 Identities = 94/380 (24%), Positives = 170/380 (44%), Gaps = 33/380 (8%)

Query: 21   LDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDK 80
            L+   A L  + +E E ELE+ RK   EE+  +ISAL +    +    E+LE R   L K
Sbjct: 696  LEKALAELRKELEELEEELEQLRK-ELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754

Query: 81   KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESE 140
            +   ++ +  +L  RL+  +  E+  +AE +  ELE  ++   KE L+ L+  +D++ +E
Sbjct: 755  ELTELEAEIEELEERLE--EAEEELAEAEAEIEELE-AQIEQLKEELKALREALDELRAE 811

Query: 141  NAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKF 200
                  +     ++L+  E   +   R    L++QIE      E L  E E+L++  E+ 
Sbjct: 812  LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871

Query: 201  EKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLD 260
            E E E L  +R  + +    +  E ++L +     E +  +      + ++ ++  + L 
Sbjct: 872  ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR-RELEELREKLAQLELR 930

Query: 261  KEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 320
             E  E  + + Q  LSE+        LEE E         L N+ +  E+E + R +  E
Sbjct: 931  LEGLEVRIDNLQERLSEEY----SLTLEEAE--------ALENKIEDDEEEARRRLKRLE 978

Query: 321  EKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 380
             K    + ++  +   A  E +E+K   D L  +K ++   +E L+E        I+E+D
Sbjct: 979  NK----IKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA-------IEEID 1027

Query: 381  ILCRRLYGD-----REQFKR 395
               R  + D      E F+R
Sbjct: 1028 REARERFKDTFDQVNENFQR 1047

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 84.0 bits (208), Expect = 2e-16
 Identities = 80/363 (22%), Positives = 189/363 (52%), Gaps = 24/363 (6%)

Query: 19   KLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQAL 78
            +L + +  + + + Q  +LE E K       +++++ +L+    E+  + E+LER+ + L
Sbjct: 668  ELKELEEELAELEAQLEKLEEELK------SLKNELRSLEDLLEELRRQLEELERQLEEL 721

Query: 79   DKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIE 138
             ++   ++E+   L +RL+ ++E  + ++ E ++L+   ++L   +E L+ L+  + +++
Sbjct: 722  KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL---EEELESLEEALAKLK 778

Query: 139  SENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 198
             E  + E + Q   ++L+  EEE  E  R    L++++E+   ++E L +E E+L+++ E
Sbjct: 779  EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 199  KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 258
            + E++ + L+E+ +E+ KE E++ +E ++LE  +   E+ LK+ E   ++ ++ E+  + 
Sbjct: 839  ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE-EEKEELEEELRELE 897

Query: 259  LDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRT 318
             +    +     E++    +   +    LE  E++    E EL    +   +   ER   
Sbjct: 898  SELAELK-----EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER--- 949

Query: 319  FEEKRERVLNDIAHLKEV---AEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKD 375
               + ER+  +I  L  V   A  E +E++   ++L+ ++ +++  +EKL E    + K+
Sbjct: 950  ---EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Query: 376  IDE 378
              E
Sbjct: 1007 KRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.4 bits (196), Expect = 5e-15
 Identities = 82/339 (24%), Positives = 157/339 (46%), Gaps = 18/339 (5%)

Query: 68  EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESL 127
           E KLER E+ L++  D ++E E  L    +  ++ E++ + + +  ELE   L+A  + L
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237

Query: 128 QI-----------LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 176
           +            L+ E+++++ E  + E +I+E   +L+   EE  EL     +LK++I
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 177 ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236
           E    +  LL +  E+L+ + E+ E+  E L EK + + +E E+     ++LE+L    E
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357

Query: 237 ERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRR-KMLEEFEMQRM 295
           E  ++ E  +   ++   E     +E           + +E  +  R  + LEE   +  
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEV------AEGEIQEIKSERD 349
            +  +L     ++E EL+E     EE  E +      L+E+       E E+ E++ E  
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477

Query: 350 QLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG 388
           +LEKE   ++   ++L+ +Q   +     L+ L   L G
Sbjct: 478 RLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPG 516

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 78.2 bits (193), Expect = 1e-14
 Identities = 55/298 (18%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 107 KAEEKKLELEKQKLIADKESLQILKVEIDQ------IESENAQQELQIQEECQKLKINEE 160
           K  +++ E + ++   + E L+ L  E+++       ++E A++  +++ E ++L     
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL----- 225

Query: 161 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 220
           E + LL    +L++++E    +   L +E E+LQ++ E+ EKE E L  + +E+ +E E+
Sbjct: 226 ELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285

Query: 221 IADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAK 280
           + +E  +L++     E  +      + +      E     +E  E     ++ +   +  
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345

Query: 281 NDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGE 340
            +  + L     +   +  E L+   +  +EL E  R    + E  L +I +  E  + E
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405

Query: 341 IQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKE 398
           I+ ++   ++L +   ++K   ++L+ +   ++ +++EL+     L    E+ +   +
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 73.6 bits (181), Expect = 3e-13
 Identities = 79/286 (27%), Positives = 154/286 (53%), Gaps = 5/286 (1%)

Query: 123 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 182
           +K S    K E+ ++E E A+ E Q+++  ++LK  + E   L  L  +L++Q+E    Q
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 183 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKE 242
            E L +E   L+++ E+ +   E L+E+ +E+ +E E++ +  ++LE+   S EE L K 
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777

Query: 243 EC---AMRDYVQREIEAIR-LDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE 298
           +     + +  Q   E +  L++E  EA  R + L    ++   RR+ LE+   +   + 
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 299 AELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEV 358
            EL  + D++E+EL+E  +  EE +E  L ++   KE  E E++E++ E+++LE+E  E+
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEE-LEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 359 KVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFV 404
           +    +L+E+   +R+ ++EL+    RL  +  + + E E   E  
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 73.9 bits (182), Expect = 3e-13
 Identities = 72/338 (21%), Positives = 158/338 (46%), Gaps = 32/338 (9%)

Query: 21   LDDQRAILDAKQQEFELELEEKRKSIEE------EMRSKISALDQQEFEISHREEKLERR 74
            L  + + L ++ +  E  L+E  + + +      E+  +I  L+Q+E ++  R E+LE  
Sbjct: 686  LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745

Query: 75   EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI 134
              +L+++ + VK +  +L AR++ ++E        + +  L   +       +  ++ E+
Sbjct: 746  LSSLEQEIENVKSELKELEARIEELEE-----DLHKLEEALNDLEARLSHSRIPEIQAEL 800

Query: 135  DQIESENAQQELQIQEECQKLK-------INEEEKSELLRLQSQLKQQIETYRHQQELLL 187
             ++E E ++ E +++E  QKL          E+E  EL   +  LK+QI++   + E L 
Sbjct: 801  SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860

Query: 188  KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLE-KLQHSAEERLKKEECAM 246
             + E+L+++ E+ E     L+ +  ++ KE++++  + ++LE K++    +  KK +   
Sbjct: 861  GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920

Query: 247  RDYVQREI---------EAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 297
                + E          +    D+E  E  +  E +    +   +  + LE   M  + +
Sbjct: 921  ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980

Query: 298  EAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 335
              E+L R D    EL+E+    EE+R+ +L  I   ++
Sbjct: 981  YEEVLKRLD----ELKEKRAKLEEERKAILERIEEYEK 1014

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 72.9 bits (179), Expect = 5e-13
 Identities = 85/415 (20%), Positives = 196/415 (47%), Gaps = 27/415 (6%)

Query: 16  EIQKLLDDQRAILDAKQQEFE--LELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            ++ LL++   +L+  +   E   +LEEK + +E E+       ++    +  R ++LE 
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 74  REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI---- 129
           R + L+K+ ++  E+   L   ++ +KE    + A  ++++ E ++L  + E L+     
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 130 LKVEIDQIESENAQQEL---------QIQEEC--QKLKINEEEKSELLRLQSQ----LKQ 174
           L+ EI ++E +  Q E             E+C     ++ EE + ELL L       L++
Sbjct: 429 LEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEE 488

Query: 175 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE-QEKIADEKKKLEKLQH 233
           ++   + + EL  +E E+L+++  + E+E   L E  + + +E +EK+   +  LE+L+ 
Sbjct: 489 ELSREKEEAELR-EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547

Query: 234 SAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQ 293
             E+   ++       ++  ++ ++   E        ++ +   + +    K   +   +
Sbjct: 548 LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEE 607

Query: 294 RMNQEAELLNRRDKMEK--ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQL 351
           R++Q  ELL   +  E   EL+E     E + E+ LN  A L+E+ +  ++E++ + ++L
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEK-LNLQAELEELLQAALEELEEKVEEL 666

Query: 352 EKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
           E E       R + +EQ     +++++L+    +L  + E+  ++     + +E+
Sbjct: 667 EAEIRREL-QRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEE 720

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 71.2 bits (175), Expect = 2e-12
 Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 29/305 (9%)

Query: 38  ELEEKRKSIEEEMRSK---ISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAA 94
           E  E+ K ++ E+R     +  L  +E       E+LE  ++ L +  + ++E   +L  
Sbjct: 210 EKAERYKELKAELRELELALLVLRLEELR-----EELEELQEELKEAEEELEELTAELQE 264

Query: 95  RLKSVKE-REKFVKAEEKKLELEK-----QKLIADKES-LQILKVEIDQIESENAQQELQ 147
             + ++E R +  + EE+  EL+K        I+  E   QIL+  +  +E +  + E Q
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 148 IQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 207
           ++E   KL    EE +EL     +LK+++E+   + E L  E E+L+   E+ E++ E L
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 208 DEKRDEINKEQEKIADE-----------KKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
             K  ++  +   + +E           + + E+LQ   EE LKK E A    +Q E+E 
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE- 443

Query: 257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316
             L++E  E     E+L  + +   +  +  E+       + A+L  R D +E+ LQE  
Sbjct: 444 -ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENL 501

Query: 317 RTFEE 321
             F E
Sbjct: 502 EGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.5 bits (173), Expect = 3e-12
 Identities = 87/355 (24%), Positives = 179/355 (50%), Gaps = 15/355 (4%)

Query: 55   SALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114
             +   Q+ E+   EE+L   E  L+K  + +K  +N+L +    ++E  + ++  E++LE
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 115  LEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQ 174
              K++L A +E L+ L+  ++++E E  + E +++E  ++L+  EEE   L    ++LK+
Sbjct: 720  ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 175  QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHS 234
            +IE    +++ L +E E+L+++ E+ E+    LD    E+   +++    ++++E+L+  
Sbjct: 780  EIEELEEKRQALQEELEELEEELEEAERR---LDALERELESLEQRRERLEQEIEELEEE 836

Query: 235  AEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQR 294
             EE  +K +    +          L+KE  E     E+L   ++   D  K LEE + + 
Sbjct: 837  IEELEEKLDELEEELE-------ELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889

Query: 295  MNQEAELLNRRDKMEKELQ---ERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQL 351
              +  EL +   ++++E++   ER    E K ER+  ++  L+E  E E     +   +L
Sbjct: 890  EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE--YEDTLETEL 947

Query: 352  EKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
            E+E   ++   E L    L   ++ +E++     L   RE  +  KE+ LE +E+
Sbjct: 948  EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.7 bits (171), Expect = 4e-12
 Identities = 71/282 (25%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 131 KVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190
           K      + E  + E ++ E   +L+  EEE   L      L+  +E  R Q E L ++ 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 191 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 250
           E+L+++    E+E E L  + +E+ +E E++ +E ++L++     EE L+  E A+    
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL- 777

Query: 251 QREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 310
           + EIE +   ++A +     E+L   E+   +  + L+  E +  + E     RR+++E+
Sbjct: 778 KEEIEELEEKRQALQ-----EELEELEEELEEAERRLDALERELESLEQ----RRERLEQ 828

Query: 311 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL 370
           E++E     EE  E+ L+++    E  E E++E+K E ++LE EK E++   ++L+E++ 
Sbjct: 829 EIEELEEEIEELEEK-LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887

Query: 371 GMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKN 412
            + +++ E   L   L   +E+ ++ +ER  E   K    + 
Sbjct: 888 ELEEELRE---LESELAELKEEIEKLRERLEELEAKLERLEV 926

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 69.7 bits (171), Expect = 5e-12
 Identities = 62/261 (23%), Positives = 127/261 (48%), Gaps = 15/261 (5%)

Query: 21  LDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDK 80
           L++ R  L+  Q+E + E EE+ + +  E++     L++   E+S  EE++E  ++ L  
Sbjct: 234 LEELREELEELQEELK-EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 81  KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESE 140
            ++ +   E       + +   E+ ++  E +LE  + KL    E L  L+ ++++++ E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 141 NAQQELQIQEECQKLK----INEEEKSELLRLQS---QLKQQIETYRHQQELLLKEHEDL 193
               E +++E   +L+      EE + +L  L+S   QL+ QI +  ++ E L    E L
Sbjct: 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412

Query: 194 QQDREKFEKEWEVLDEKRDEINKE--QEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251
           +  RE+ ++E E L +K +E   +  Q ++ + +++LE+LQ   E   +  E       +
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL-----R 467

Query: 252 REIEAIRLDKEAFEATMRHEQ 272
            E+E      +A E  +   Q
Sbjct: 468 EELEEAEQALDAAERELAQLQ 488

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 66.3 bits (161), Expect = 6e-11
 Identities = 75/340 (22%), Positives = 167/340 (49%), Gaps = 15/340 (4%)

Query: 28   LDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE 87
               K +E + + +E +K+ E     K  A + ++ E + + ++ ++ E+A  KK+D  K+
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEA----KKKADEAKKAEEAKKADEAKKAEEA--KKADEAKK 1541

Query: 88   KENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 147
             E    A    +K+ E+  KAEEKK   E +K   DK        E  + E    ++ ++
Sbjct: 1542 AEEKKKA--DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599

Query: 148  IQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 207
            + EE +K+K  E +K+E  +++++  ++ E  + + E L K+  + ++  E+ +K  E  
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659

Query: 208  DEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEAT 267
              K  E  K+ E   ++KKK E+ + + E+  K  E   ++  + + +A  L K+  E  
Sbjct: 1660 KIKAAEEAKKAE---EDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEK 1715

Query: 268  MRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVL 327
             + E+L  +E+    + +  ++ E +   ++AE   + ++ +K++    +  E+K E + 
Sbjct: 1716 KKAEELKKAEEENKIKAEEAKK-EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774

Query: 328  NDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQE 367
             +   +  + E   +E +  R +++K+  ++  N   + E
Sbjct: 1775 KEKEAV--IEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 59/264 (22%), Positives = 128/264 (48%), Gaps = 20/264 (7%)

Query: 21  LDDQRAILDAKQQEFEL-ELEEKRKSIEEE----------MRSKISALDQQEFEISHREE 69
           L  +   L+      +L EL ++ + +EEE          ++ ++   +++  E+    E
Sbjct: 218 LKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 70  KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE----KQKLIADKE 125
           +L    + L ++   +KE+  +L   +  ++ER + ++ E ++LE      K+K+ A KE
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 126 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL----QSQLKQQIETYRH 181
            L+  +  ++++E   A+ E   +E  +KL    EE  EL        ++L+ ++   R+
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 182 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241
           + E L +E E L++  E+  +  E L E+  E+  E E++  E ++L +     EE+L +
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL-E 456

Query: 242 EECAMRDYVQREIEAIRLDKEAFE 265
           E       ++RE+  ++ + +  E
Sbjct: 457 ELRDRLKELERELAELQEELQRLE 480

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 49/195 (25%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 38  ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLK 97
           ELE + + +EE +      ++  + E+  RE  LE  EQ L +  +  +E E  L+A L+
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372

Query: 98  SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 157
            ++E  + ++ E  +LE E  ++   +  L+ LK EI+ +E    +   ++++  ++LK 
Sbjct: 373 ELEELFEALREELAELEAELAEI---RNELEELKREIESLEERLERLSERLEDLKEELKE 429

Query: 158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 217
            E E  EL     +L +++E        L ++ E+L+   ++ E+E   L E+   + KE
Sbjct: 430 LEAELEELQTELEELNEELEE-------LEEQLEELRDRLKELERELAELQEELQRLEKE 482

Query: 218 QEKIADEKKKLEKLQ 232
              +     +LE  Q
Sbjct: 483 LSSLEARLDRLEAEQ 497

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 76/345 (22%), Positives = 157/345 (45%), Gaps = 27/345 (7%)

Query: 63  EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 122
            +  R E L+R   +L  +  R++ + ++L+  L    +  + +   EK++E  +Q+   
Sbjct: 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEK 734

Query: 123 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 182
            KE L+ L+ ++  +E E       I+    +LK  E    EL     +L++ +     +
Sbjct: 735 LKERLEELEEDLSSLEQE-------IENVKSELKELEARIEELEEDLHKLEEALNDL--E 785

Query: 183 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKE 242
             L      ++Q +  K E+E   ++ +  EI ++  ++  EK+ LEK     +E+    
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 243 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL 302
           +      +++EIE +   KE  E     E+L   E A  D    L + + +R   EA+L 
Sbjct: 846 K-EQIKSIEKEIENLNGKKEELE-----EELEELEAALRDLESRLGDLKKERDELEAQL- 898

Query: 303 NRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNR 362
               ++E++++E     E+KR+R L+++    E  E E+ EI+  + + E+   E     
Sbjct: 899 ---RELERKIEELEAQIEKKRKR-LSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-L 953

Query: 363 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 407
           E +Q +   + ++I  L+ +        ++++   +R  E  EK 
Sbjct: 954 EDVQAELQRVEEEIRALEPVNMLAI---QEYEEVLKRLDELKEKR 995

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 78/375 (20%), Positives = 171/375 (45%), Gaps = 25/375 (6%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSK---ISALDQQEFEISHREEKLE 72
           E  K L++    L  +  E    LEE ++ +EE  +        L++ E EI   EE++ 
Sbjct: 382 ERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQIN 441

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
           + E      ++     E       +  +E EK +    +    E ++ ++ ++    L+ 
Sbjct: 442 QLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELRE 501

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL-----LL 187
           EI+++E E  + E ++ E  +  +  +EE  E L     L +++E  + + +L      L
Sbjct: 502 EIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEEL 561

Query: 188 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ--HSAEERLKKEECA 245
           ++ ED  Q+ ++  +E  +L  +++E+ + +E++ + KKKL++L+   S  E L +    
Sbjct: 562 RQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLEL 621

Query: 246 MRDY--VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 303
                 ++   E +  + E        E+L+  + A  +  + +EE E +   +   + N
Sbjct: 622 SEAENELEEAEEELESELEKLNLQAELEELL--QAALEELEEKVEELEAEIRRELQRIEN 679

Query: 304 RR---------DKMEKELQERTRTFEEKRERVLNDIAHLKEVAE--GEIQEIKSERDQLE 352
                      +++E+EL++     EE  +++      ++E+     E++E+K E ++LE
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739

Query: 353 KEKHEVKVNREKLQE 367
           K    ++  REKL +
Sbjct: 740 KALELLEELREKLGK 754

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 5e-10
 Identities = 83/335 (24%), Positives = 167/335 (49%), Gaps = 23/335 (6%)

Query: 68  EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESL 127
           E KLER  + LD+  D + E E  L   L+  ++ EK  + +E K EL + +L      L
Sbjct: 178 ERKLERTRENLDRLEDILNELERQLK-SLE--RQAEKAERYKELKAELRELELALLVLRL 234

Query: 128 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLL 187
           + L+ E+++++ E  + E +++E   +L+  EE+  EL    S+L+++IE  + +   L 
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294

Query: 188 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247
            E   L+Q ++   +    L+ + +E+     ++ + + KL++L     E  +K E    
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELE---AQLEELESKLDELAEELAELEEKLEELKE 351

Query: 248 DYVQREIEAIRLDKEAFEATMRHEQL-VLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD 306
           +    E E   L+ E  E   R E+L    E  ++   ++          Q A L N  +
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL--------QIASLNNEIE 403

Query: 307 KMEKELQERTRTFEEKRERVLNDI-AHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL 365
           ++E  L+      E++RER+  +I   LK++ E E++E+++E ++LE+E  E++   E+L
Sbjct: 404 RLEARLER----LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459

Query: 366 QEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 400
           +E    +R++++E +   + L     +  + + R 
Sbjct: 460 EEALEELREELEEAE---QALDAAERELAQLQARL 491

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.2 bits (154), Expect = 5e-10
 Identities = 73/349 (20%), Positives = 160/349 (45%), Gaps = 18/349 (5%)

Query: 47   EEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFV 106
             + +R ++  L +   E+S  + +L R E  LD+ S  + +    +    K +++ E+  
Sbjct: 676  LQRLRERLEGLKR---ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 107  KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSEL 165
            +  +++LE  ++ L + ++ ++ +K E+ ++E+   + E  + +  + L  +        
Sbjct: 733  EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 166  LRLQSQLKQQIETYRHQQELLLKEHE----DLQQDREKFEKEWEVLDEKRDEINKEQEKI 221
            +        ++E    + E  L+E E     L  ++E  EKE + L E+R ++ ++ + I
Sbjct: 793  IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 222  ADEKKKLEKLQHSAEERLKKEECAMRDYVQR----EIEAIRLDKEAFEATMRHEQLVLSE 277
              E + L   +   EE L++ E A+RD   R    + E   L+ +  E   + E+L    
Sbjct: 853  EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912

Query: 278  KAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT--RTFEEKRERVLNDIAHLKE 335
            + K  R   L+        + +E+ + + + E+  +E       + + +RV  +I  L+ 
Sbjct: 913  EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972

Query: 336  VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCR 384
            V    IQE +    +L+    E+K  R KL+E++  + + I+E +   R
Sbjct: 973  VNMLAIQEYEEVLKRLD----ELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 22/272 (8%)

Query: 98  SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 157
           + +    F ++E  +L+  +++L   K  L  L+ E+ +IE+        + E  Q+L  
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENR-------LDELSQELSD 713

Query: 158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 217
              +  E+ +   QL+Q+ E  + + E L ++   L+Q+ E  + E   L E    I + 
Sbjct: 714 ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE---LKELEARIEEL 770

Query: 218 QEKIADEKKKLEKL-QHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLS 276
           +E +   ++ L  L    +  R+ +        +Q E+  +  +    EA +R  +  L+
Sbjct: 771 EEDLHKLEEALNDLEARLSHSRIPE--------IQAELSKLEEEVSRIEARLREIEQKLN 822

Query: 277 EKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEV 336
                   K   E E+Q + ++   L  + K  ++  E     +E+ E  L ++      
Sbjct: 823 RL---TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879

Query: 337 AEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 368
            E  + ++K ERD+LE +  E++   E+L+ Q
Sbjct: 880 LESRLGDLKKERDELEAQLRELERKIEELEAQ 911

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 75/393 (19%), Positives = 182/393 (46%), Gaps = 20/393 (5%)

Query: 19  KLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQAL 78
           +  +    +L    +E + ++EE    + E +      L+  E E+   ++  E +E+  
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE-- 224

Query: 79  DKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIE 138
            ++ + ++++   L  RL  ++E ++ ++  + +L   +   +   E+L+I + E+ ++E
Sbjct: 225 -QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLEL---EALKIREEELRELE 280

Query: 139 SENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 198
               + E +I+   +  +  EE + EL  L++ L++  E        LL++ + L++  E
Sbjct: 281 RLLEELEEKIERLEELEREIEELEEELEGLRALLEELEE--------LLEKLKSLEERLE 332

Query: 199 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 258
           K E++ E L+ + +E+ +E+ ++A   ++  K      E L+KE     + +++  EAI+
Sbjct: 333 KLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ 392

Query: 259 LDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRT 318
             KE         + +  E  + ++     E E++ + +E + L  +    +  +     
Sbjct: 393 ELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAE 452

Query: 319 FEEKRER-----VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMR 373
                E+           H KE+ E    E++   ++L +EK E ++ RE+++E +  +R
Sbjct: 453 LAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAEL-REEIEELEKELR 511

Query: 374 KDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
           +  +EL  L       +E+ + + E+    +E+
Sbjct: 512 ELEEELIELLELEEALKEELEEKLEKLENLLEE 544

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 76/319 (23%), Positives = 155/319 (48%), Gaps = 24/319 (7%)

Query: 26  AILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFE---ISHREEKLERREQALDKKS 82
             LD    E   +LE  R+  E+  R +    +++E+E   +   +E LER+++A+++  
Sbjct: 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER-- 244

Query: 83  DRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA--DKESLQI------LKVEI 134
            ++   E +L    + + E EK ++  E+ LE   +K+    ++E L++      L+ EI
Sbjct: 245 -QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI 303

Query: 135 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 194
             +E   A++E ++++  ++L   E E  +LL    +L+++IE  R +++ L +E+ +L+
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363

Query: 195 QDREKFEKEWEVLDEK----RDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 250
           ++ E    E E +D++    RDE+   +EK+   K+++ +L+   E    +EE       
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK--RELDRLQEELQRLSEE 421

Query: 251 QREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR---DK 307
             ++ A     EA    +  E+   + + K    K LE+        E EL + +   D+
Sbjct: 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK-LEQLAADLSKYEQELYDLKEEYDR 480

Query: 308 MEKELQERTRTFEEKRERV 326
           +EKEL +  R   E   + 
Sbjct: 481 VEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 7e-09
 Identities = 56/256 (21%), Positives = 132/256 (51%), Gaps = 19/256 (7%)

Query: 21   LDDQRAILDAKQQEFELELEEKRKSIEE------EMRSKISALDQQEFEISHREEKLERR 74
            L++  A L  + +E E + +  ++ +EE      E   ++ AL+++   +  R E+LE+ 
Sbjct: 770  LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 75   EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIAD----------- 123
             + L+++ + ++EK ++L   L+ +++  + +K E ++LE EK++L  +           
Sbjct: 830  IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889

Query: 124  KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLR-LQSQLKQQIETYRHQ 182
            +E L+ L+ E+ +++ E  +   +++E   KL+  E E  EL   L+ + +  +ET   +
Sbjct: 890  EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Query: 183  Q-ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241
            + E L +E E L     +  +E+E ++E+ +E+  ++E + + K+KL ++    ++  ++
Sbjct: 950  EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009

Query: 242  EECAMRDYVQREIEAI 257
                  D +      I
Sbjct: 1010 RFKETFDKINENFSEI 1025

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 59.3 bits (144), Expect = 7e-09
 Identities = 69/326 (21%), Positives = 146/326 (44%), Gaps = 23/326 (7%)

Query: 63  EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 122
           E+   EE +ER +  +D+K  +++    +     +     ++  + E  +L  EK+ L  
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237

Query: 123 DKES----LQILKVEIDQIESENAQQELQIQEECQKL-----KINEEEKSELLRLQSQL- 172
            KE+    L  L+ E++++  E ++ E +++E  Q L     KI +  + E LR++ ++ 
Sbjct: 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG 297

Query: 173 --KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230
             + +I +         +E ED ++   K E E   +D+   EI + + +I +E+K+ +K
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAE---IDKLLAEIEELEREIEEERKRRDK 354

Query: 231 LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLV--LSEKAKNDRRKM-- 286
           L     E  ++ E    +  + + E      E  +   + E+L   ++E  +   R    
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 287 LEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE---EKRERVLNDIAHLKEVAEGEIQE 343
           L+    +  +  A +     K+  EL+E         +K+E  L  +A      E E+ +
Sbjct: 415 LQRLSEELADLNAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473

Query: 344 IKSERDQLEKEKHEVKVNREKLQEQQ 369
           +K E D++EKE  +++    + + Q 
Sbjct: 474 LKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 8e-09
 Identities = 49/219 (22%), Positives = 128/219 (58%), Gaps = 7/219 (3%)

Query: 16   EIQKLLDDQRAILDAKQQEFELELEEKRKSIEE--EMRSKISALDQQEFEISHREEKLER 73
            E+++ L++    LDA ++E E   + + +  +E  E+  +I  L+++  E+    E+LE+
Sbjct: 797  ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
              + L ++ + ++ ++ +L   LK ++E ++ ++ E ++LE E  +L   KE ++ L+  
Sbjct: 857  ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL---KEEIEKLRER 913

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEK--SELLRLQSQLKQQIETYRHQQELLLKEHE 191
            ++++E++  + E+++ E  ++L+   E+   +EL R   +L+++IE         ++E+E
Sbjct: 914  LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973

Query: 192  DLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230
            ++++  E+ + + E L+E ++++ +  E++  EK++  K
Sbjct: 974  EVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFK 1012

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 59.4 bits (143), Expect = 8e-09
 Identities = 77/380 (20%), Positives = 168/380 (44%), Gaps = 18/380 (4%)

Query: 22   DDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKK 81
            ++++   +AK+ E + + +E +K  EE    K     ++  E   + +  +++ +   K 
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344

Query: 82   SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESEN 141
            ++  K +    A   ++ +E+ +   AE+KK E +K+   A K++ +  K +  + ++E 
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAE--AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402

Query: 142  AQQ---ELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 198
             ++   EL+     +K     ++K+E  +   + K++ E  +   E   K  E  + +  
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 199  KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 258
            K + E     ++  +  +E +K  + KKK E+ +  A+E  K  E   +    ++ E  +
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522

Query: 259  LDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRT 318
               EA +A          E  K D  K  EE +     ++AE L + +  EK+  E  + 
Sbjct: 1523 KADEAKKA---------EEAKKADEAKKAEEKKKADELKKAEELKKAE--EKKKAEEAKK 1571

Query: 319  FEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDE 378
             EE +   L      K+  E  I+E+    ++ +K K E     E+ + +   ++K  +E
Sbjct: 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631

Query: 379  LDILCRRLYGDREQFKREKE 398
               + +    + E+ K+ +E
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEE 1651

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 63/377 (16%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 33  QEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 92
           +E   + E  +K IEE        +D +E ++   + K E+ ++AL+    + K +  + 
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLK-EQAKKALEYYQLKEKLELEEE 225

Query: 93  AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEEC 152
                       ++K  E++++L ++ L  ++E ++  K E+++ E   AQ   + +EE 
Sbjct: 226 NLLYL------DYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279

Query: 153 QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 212
           ++ K+ EEE   L + + +LK ++     ++    ++ ++ +++ +K EKE         
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKE--------- 330

Query: 213 EINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ 272
            + KE+E+I + +K+L++L+   E   ++EE       + + +  +L++E         +
Sbjct: 331 -LKKEKEEIEELEKELKELEIKREAEEEEEE----QLEKLQEKLEQLEEELLAKKKLESE 385

Query: 273 LVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAH 332
            + S     +    L+  E +      EL  + + + KE ++      E+ E  L     
Sbjct: 386 RLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQG 445

Query: 333 LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ 392
                + E+++   +  + + E  + +   ++ +  +L  + ++  L            +
Sbjct: 446 KLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESK 505

Query: 393 FKREKERFLEFVEKHTS 409
            +      L  ++    
Sbjct: 506 AREGLAVLLALIKDGVG 522

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 56.7 bits (138), Expect = 3e-08
 Identities = 38/145 (26%), Positives = 82/145 (56%), Gaps = 19/145 (13%)

Query: 24  QRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSD 83
           + A+L+AK+     E+ + R   E+E+R + + L + E  +  +EE L+R+ + L+K+ +
Sbjct: 56  KEALLEAKE-----EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110

Query: 84  RVKEKENDLAARLKSVKEREKFVKA--EEKKLELEKQKLIADKESLQILKVEIDQIESEN 141
            +++KE +L  + + ++++E+ ++   EE+  ELE+   +  +E+ +IL   ++++E E 
Sbjct: 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL---LEKVEEE- 166

Query: 142 AQQELQIQEECQKL--KINEEEKSE 164
                  + E   L  +I EE K E
Sbjct: 167 ------ARHEAAVLIKEIEEEAKEE 185

Length = 520

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 56.5 bits (137), Expect = 4e-08
 Identities = 41/143 (28%), Positives = 82/143 (57%), Gaps = 19/143 (13%)

Query: 26  AILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRV 85
           A+L+AK+     E+ + R  +E E++ + + L + E  +  REE L+R+ ++LDKK + +
Sbjct: 52  ALLEAKE-----EVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENL 106

Query: 86  KEKENDLAARLKSVKEREKFVKAEEKKL--ELEKQKLIADKESLQILKVEIDQIESENAQ 143
           ++KE +L+ + K++ E+E+ ++    +   ELE+   +  +E+ +IL   ++++E E   
Sbjct: 107 EKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEIL---LEEVEEE--- 160

Query: 144 QELQIQEECQKL--KINEEEKSE 164
                + E  KL  +I EE K E
Sbjct: 161 ----ARHEAAKLIKEIEEEAKEE 179

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 89/396 (22%), Positives = 178/396 (44%), Gaps = 35/396 (8%)

Query: 16  EIQKLLDDQRAILDAKQQEFE------LELEEKRKSIEEEMRSKISALDQQEFEISHREE 69
           E++  L++ R    A  +E E       +LEE+ + + EE     S L++    +  R E
Sbjct: 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384

Query: 70  KLERREQALDKKSDRVKEKENDL---AARLKSVKEREKFVKAEEKKLELEKQKLIADKES 126
           ++E  E+ +++  +R  +   DL      L+ ++E    ++  E +LE   +      E 
Sbjct: 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444

Query: 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETY--RHQQE 184
            + L       E     Q ++     + ++ + E   EL      L++++E    R ++ 
Sbjct: 445 AEALLEAGKCPECG---QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501

Query: 185 LLLKEHED-LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEE 243
             L E ED +++  E+ E   E++ E+R+ I +++E+  + +++  +L+  AEE+ +   
Sbjct: 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561

Query: 244 CAMRDYVQREIEAIRLDKEAFEATMRHEQL-----VLSEKAK--------NDRRKMLEEF 290
            A  +  +   E   L+ +  E   R E L     +L+  A          ++R+ L E 
Sbjct: 562 EAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAEL 621

Query: 291 EMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ 350
             +R  + AE   R+ ++E E  E     EE RE       +L++V E ++ E++ ERD 
Sbjct: 622 NDERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQV-EEKLDELREERDD 678

Query: 351 LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 386
           L+ E   V+   E+L+E    +R+  + L+     L
Sbjct: 679 LQAEIGAVENELEELEE----LRERREALENRVEAL 710

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 108/431 (25%), Positives = 213/431 (49%), Gaps = 40/431 (9%)

Query: 13  LQVEIQKLLDDQRAI--LDAKQQEFELELEEKRKSIE--EEMRSKISALDQQEFEISHRE 68
           ++  I++L + +  +  L  K +E E  LEE  +  E  EE ++K   L++ +  ++   
Sbjct: 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT 385

Query: 69  -EKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQK------LI 121
            EKLE+  + L+K  + ++E+ + + AR+  +K+  K +K   ++L+  K K       +
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREL 445

Query: 122 ADKESLQILK---VEIDQIESENAQ---QELQIQEECQKLKINEEEKSELLRLQSQLKQQ 175
            ++   ++L+    E+ +IE E  +   +E ++++E ++L+   +++SEL++L+   +Q 
Sbjct: 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQL 505

Query: 176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEI---NKEQEKIADEKKKLEKLQ 232
            E    +++L     E+L++  E++EK  E L + + EI    KE EK+ + KKKL +L+
Sbjct: 506 KEL---EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562

Query: 233 ---HSAEERLKKEECAMRDYVQREIEAIRLD-KEAFEATMRHEQLVLSEKAKNDRRKMLE 288
                 EE L +    + +     +E +    KE       + +L  +EK      K L+
Sbjct: 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELK 622

Query: 289 EFEMQRMNQEAEL---LNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIK 345
           + E +      EL     R +++ KEL+E  + + E+    L +          E+  ++
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE---EYLELSRELAGLR 679

Query: 346 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCR---RLYGDREQFKR----EKE 398
           +E ++LEK + E+K   EKL+E+     K   EL+ L +   R+   RE+ K+     KE
Sbjct: 680 AELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739

Query: 399 RFLEFVEKHTS 409
           R L  V +  S
Sbjct: 740 RALSKVGEIAS 750

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 56.6 bits (137), Expect = 5e-08
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 43/328 (13%)

Query: 40  EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE--KENDLAARLK 97
           EE RK + EE  +++  ++++  EI  +E KL +  + L+K   +  E  K  +LA +LK
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK 506

Query: 98  SVKEREKFVKAEE-----KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEEC 152
            ++E+ K    EE     ++ E  K+KLI  K  ++ LK E++++E    +     +   
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK--- 563

Query: 153 QKLKINEEEKSELLR------------LQSQLKQQIETYRHQQELLLKEHEDLQQDREKF 200
            KL   EEE +ELL+            L+ +LK+    Y    EL   E E L+++ ++ 
Sbjct: 564 -KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE-LEREEKEL 621

Query: 201 EKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLD 260
           +K  E LD+  +E+ + ++++ + +K+LE+L+    E          +Y +   E + L 
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE---------EYEELREEYLELS 672

Query: 261 KEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTF- 319
           +E        E+L   EK + + +K LE+ + +   +E      + K E E  E+     
Sbjct: 673 RELAGLRAELEEL---EKRREEIKKTLEKLKEELEERE------KAKKELEKLEKALERV 723

Query: 320 EEKRERVLNDIAHLKEVAEGEIQEIKSE 347
           EE RE+V    A LKE A  ++ EI SE
Sbjct: 724 EELREKVKKYKALLKERALSKVGEIASE 751

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 56.6 bits (137), Expect = 5e-08
 Identities = 56/344 (16%), Positives = 130/344 (37%), Gaps = 38/344 (11%)

Query: 89  ENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI-ESENAQQELQ 147
           E +L  RL+  +E      A  K+ + E+Q + A+ E  +  + E +     + A+ +LQ
Sbjct: 602 ETELRERLQQAEE--ALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQ 659

Query: 148 ---IQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL--QQDREKFEK 202
               +++  K K+           + Q + Q+     Q + LL++ +        +  E 
Sbjct: 660 RLQNEQQSLKDKLELAIAER----KQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFREL 715

Query: 203 EWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ-REIEAIRLDK 261
             E L + +    +   ++A     +E  +  A+ RLK+ +      +   +++   + +
Sbjct: 716 RTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKE 775

Query: 262 EAFEATMRHEQLVLSEKAKNDRRKMLE--EFEMQRMNQEAELLNRRDKMEKELQERTRTF 319
              +       +   E+    R ++ E   F  +       L   R      L  + R  
Sbjct: 776 LKRQIEELETTI---ERIAVRRPEVREYRAFMQETWLHRDSLREERPN----LAIQLREL 828

Query: 320 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEV------------KVNREKLQ- 366
           E   E +  ++  L +  +   ++++ ER  LEK+  ++            ++   K   
Sbjct: 829 ESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPA 888

Query: 367 ---EQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 407
              + +  + + +D+L+   R+        K+  ERF   ++ H
Sbjct: 889 NANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKDH 932

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 56.1 bits (135), Expect = 8e-08
 Identities = 59/401 (14%), Positives = 149/401 (37%), Gaps = 10/401 (2%)

Query: 10   YGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREE 69
               L   ++     +  +      E  L  + + K+   E+  ++ A  + + +      
Sbjct: 632  DTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELA 691

Query: 70   KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 129
            K E   +  + K     +KE  +   LK +K  ++ + A++ +   +K          +I
Sbjct: 692  KNEILRRQEEIK-----KKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKI 746

Query: 130  LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
             + E ++ +S   ++E + ++    LK  E  + E    + +++++ E     QE  L+ 
Sbjct: 747  KEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRA 806

Query: 190  HEDLQQDR----EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECA 245
             E+  ++     E+ +   E  ++ ++E  +E      E++KLEKL    E    +EE  
Sbjct: 807  LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA-EEELERLEEEIT 865

Query: 246  MRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR 305
              + +Q  +      +E         +    ++ K +  +  ++  +    +        
Sbjct: 866  KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIA 925

Query: 306  DKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL 365
            ++    L+  +   E   E             E E +  +    + E     +    E  
Sbjct: 926  EEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFE 985

Query: 366  QEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
            ++++   + ++ +  +   +    RE  +   +RF EF+E 
Sbjct: 986  EKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLEL 1026

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 55.9 bits (135), Expect = 9e-08
 Identities = 51/318 (16%), Positives = 113/318 (35%), Gaps = 26/318 (8%)

Query: 48   EEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 107
            +E RS ++ + + +  I   ++  E  E     K++        L  +     + +K   
Sbjct: 810  KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE-------VLIQKFGRSLKAKKRFS 862

Query: 108  AEEKK--LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSEL 165
              +K+       Q++   +  LQ LK+++  I S      L+++ E  +LK        +
Sbjct: 863  LLKKETIYLQSAQRVELAERQLQELKIDVKSI-SSLKLVNLELESEIIELK-KSLSSDLI 920

Query: 166  LRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEV-LDEKRDEINKEQEKIADE 224
              L+ +     E     ++LL     +     E  +      L E   ++ +  E+  D 
Sbjct: 921  ENLEFKT----ELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDL 976

Query: 225  KKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEA---TMRHEQLVLSEKAKN 281
             KK   L         K    ++++ + E+  +     A +     ++   + ++E    
Sbjct: 977  LKKSTIL----VREGNKANSELKNFKK-ELAELSKQYGALQESTKQLKELPVEVAELQSA 1031

Query: 282  DRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLK--EVAEG 339
             +    E  E+  +    +L         +LQ R +  + +RE  L D   L   E  E 
Sbjct: 1032 SKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTEN 1091

Query: 340  EIQEIKSERDQLEKEKHE 357
             ++ I  +  ++      
Sbjct: 1092 LLKTINVKDLEVTNRNLV 1109

Length = 1463

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.1 bits (132), Expect = 1e-07
 Identities = 83/408 (20%), Positives = 168/408 (41%), Gaps = 20/408 (4%)

Query: 14   QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            +VEI +  +D R   +A++ E   + E  RK+ E     ++   +      + R+ + ER
Sbjct: 1153 RVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEER 1212

Query: 74   REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
            + +   K  D  K +    A   K  K+ E+  KAEE++   E +K    + +    +  
Sbjct: 1213 KAEEARKAEDAKKAEAVKKAEEAK--KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270

Query: 134  IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
              + E      EL+  EE  K K +E +K+E  +   + K++ E  +   E   K  E  
Sbjct: 1271 AIKAEEARKADELKKAEE--KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Query: 194  QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253
            ++     +K  E   +K  E  K + + A ++ +  + +  A E+ K+E     D  +++
Sbjct: 1329 KKADAAKKKAEEA--KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386

Query: 254  IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQ 313
             E  +   EA             +KA+ D++K  E  +     ++A+   ++ + +K+  
Sbjct: 1387 AEEKKKADEA------------KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434

Query: 314  ERTRTFEEKRE-RVLNDIAHLKEVAEGEIQEIKSERDQLE-KEKHEVKVNREKLQEQQLG 371
            E  +  EE ++       A   + AE   ++ +  +   E K+K E     ++ +++   
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494

Query: 372  MRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRA 419
             +K  DE            E  K E+ +  +  +K    K   E  +A
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 79/418 (18%), Positives = 180/418 (43%), Gaps = 33/418 (7%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEM---RSKISALDQQEFEISHREEKLE 72
            + + L+   A L+  ++E E +L    + +EE     R +++ L+ +  EI +  E+L+
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
           R  ++L+++ +R+ E+  DL   LK ++   + ++ E ++L  E ++L    E L+    
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD--- 460

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH-- 190
            + ++E E A+ + ++Q   ++L   E     L   Q   +         +  L   +  
Sbjct: 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGP 520

Query: 191 -EDLQQDREKFEKEWEV-LDEKRDEINKEQEKIADEKKKLEKLQH----------SAEER 238
             +L + +EK+E   E  L  +   +  E E++A +  +  K               +  
Sbjct: 521 VAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL 580

Query: 239 LKKEECAMRDYVQREIEAIRLDKE---AFEATMRHEQLVLS-EKAKNDRRKMLEEFEMQR 294
              +  A   ++    + I  D +   A    +    +V   E+A+   RK+  ++ +  
Sbjct: 581 RSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRI-- 638

Query: 295 MNQEAELLNRR------DKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSER 348
           +  + +L+          + ++    + R  +E  E  L ++    E  E E++ +K+E 
Sbjct: 639 VTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEE-LAELEAQLEKLEEELKSLKNEL 697

Query: 349 DQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
             LE    E++   E+L+ Q   +++++  L+    +L    E+ + E E   E +E+
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 64/286 (22%), Positives = 133/286 (46%), Gaps = 14/286 (4%)

Query: 96  LKSVKEREKFVKAEEKKLELEK--QKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 153
           ++ +   + +  A +   E+ K  ++ I   E        I+++  E  ++  ++  E  
Sbjct: 151 VRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN 210

Query: 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDE 213
           ++     E  E L    +  +++E  + + E L KE E L+  + K E++   L+E+ +E
Sbjct: 211 EISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270

Query: 214 INKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQL 273
           + KE E++ ++ K+L++L+  AEE +K  E    +Y+    E I       E  +   + 
Sbjct: 271 LKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDELRE-IEKRLSRLEEEINGIEE 328

Query: 274 VLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHL 333
            + E  + + R  LEE +     +  EL  R +    EL+ER   +EE + +        
Sbjct: 329 RIKELEEKEER--LEELK----KKLKELEKRLE----ELEERHELYEEAKAKKEELERLK 378

Query: 334 KEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 379
           K +     ++++ E ++LEK K E++    K+  +   ++K+I EL
Sbjct: 379 KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 63/371 (16%), Positives = 142/371 (38%), Gaps = 57/371 (15%)

Query: 47  EEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFV 106
           E E+R ++   ++    +     K ++ E+ L               A L+  K  E   
Sbjct: 602 ETELRERLQQAEEA---LQSAVAKQKQAEEQLV-----------QANAELEEQKRAEAEA 647

Query: 107 KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL 166
           +   K+  L+ Q+L  +++SL+  K+E+  I     Q E Q+++   +LK   E+     
Sbjct: 648 RTALKQARLDLQRLQNEQQSLK-DKLEL-AIAERKQQAETQLRQLDAQLKQLLEQ----- 700

Query: 167 RLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 226
                          QQ  L    +D ++ R +   +W+V++ + D       ++A    
Sbjct: 701 ---------------QQAFLEALKDDFRELRTERLAKWQVVEGELD------NQLAQLSA 739

Query: 227 KLEKLQHSAEERLKKEECAMRDYVQ-REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 285
            +E  +  A+ RLK+ +      +   +++   + +   +       +   E+    R +
Sbjct: 740 AIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTI---ERIAVRRPE 796

Query: 286 MLE--EFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQE 343
           + E   F  +       L   R      L  + R  E   E +  ++  L +  +   ++
Sbjct: 797 VREYRAFMQETWLHRDSLREERPN----LAIQLRELESSAEELQQELTRLIKDTKLRRKK 852

Query: 344 IKSERDQLEKEKHEVKVNREKLQEQQ-----LGMRKDIDELDILCRRLYGDREQFKREKE 398
           ++ ER  LEK+  ++      L+++      L    + ++ +          E+FKR+++
Sbjct: 853 LEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRKRK 912

Query: 399 RFLEFVEKHTS 409
           R    ++K   
Sbjct: 913 RLSGDLKKFLE 923

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 53.8 bits (129), Expect = 3e-07
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 32/296 (10%)

Query: 136 QIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195
            +E + +    +I++    L+ + E+  EL     + +   E+   ++  LL +  + QQ
Sbjct: 161 ALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQ 220

Query: 196 DREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 255
              + E++ + L +K+ E ++  E   D + +LE+++   ++RLKK     RD     I+
Sbjct: 221 RILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERID 280

Query: 256 AIRLDKEAFEATMR--HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAEL------------ 301
            ++L+ E     +R   E+L  S++      + L      R +  AEL            
Sbjct: 281 -LQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSL 339

Query: 302 ------LNRRDKMEKELQERT---RTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLE 352
                 L  ++   +  QER    ++ E  ++R+    A L ++ E  +QE +S+R    
Sbjct: 340 QLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKL-EEWLQEERSQR---- 394

Query: 353 KEKHEVKVNREK--LQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
            EK EV++  EK   + Q    R+++ EL    R L  ++EQ + EK+  L+++  
Sbjct: 395 -EKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQELLDYIRV 449

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 53.0 bits (127), Expect = 5e-07
 Identities = 53/321 (16%), Positives = 137/321 (42%), Gaps = 10/321 (3%)

Query: 12   LLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKL 71
            LL  ++Q+  D     L   +Q+ + + EE+ KS  ++   +    +    E    EE+ 
Sbjct: 723  LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782

Query: 72   ERREQAL-DKKSDRVKEKENDLAARLKSVKEREKFVKA-EEKKLELEKQKLIADKESLQI 129
            +  +  + ++K +++K +E +L A  + +KE  + ++  +    + EK       +  ++
Sbjct: 783  KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK------IKEEEL 836

Query: 130  LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
             ++ ++  E +  ++  + + E  + +I +EE  + L L+ +  ++ +     +    KE
Sbjct: 837  EELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 896

Query: 190  HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 249
             E+ ++  E+ +K+  + +++ +   +  E+     K   + +    E   ++E    + 
Sbjct: 897  KEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNK 956

Query: 250  VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKME 309
             + E    RL   A E       + ++E  + + R   +E + +R+ +E + L R   +E
Sbjct: 957  EEEEERNKRL-LLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREI-IE 1014

Query: 310  KELQERTRTFEEKRERVLNDI 330
            +  Q      E          
Sbjct: 1015 ETCQRFKEFLELFVSINRGLN 1035

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.8 bits (126), Expect = 8e-07
 Identities = 93/413 (22%), Positives = 168/413 (40%), Gaps = 34/413 (8%)

Query: 16   EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE 75
            E ++  ++ R   DAK+ E   + EE +K  EE  +++    +++  +          R 
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268

Query: 76   QALDKKSDRVKEKENDLAARLKSV----------------KEREKFVKAEEKKLELEKQK 119
            QA  K  +  K  E   A   K                  K+ E+  KA+E K + E+ K
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Query: 120  LIAD----KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQ 175
              AD    K        E  + E+E A  E +  EE  K +  E++K E  +     K++
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE--KAEAAEKKKEEAKKKADAAKKK 1386

Query: 176  IETYRHQQELLLKEHEDLQ-----QDREKFEKEWEVLDEKRDEINKEQE--KIADEKKKL 228
             E  +   E   K  ED +     +     +K+ +   +K +E  K  E  K A+E KK 
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 229  EKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLE 288
            ++ +  AEE  K EE   +    ++ +     K+A EA    E    +E+AK    +  +
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKAD--EAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504

Query: 289  EFEMQRMNQEAELLNRRDKME--KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKS 346
              E ++   EA+      K +  K+ +E  +  E K+         LK+  E +  E K 
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564

Query: 347  ERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR-EQFKREKE 398
            + ++ +K + +  +   K +E +      I+E+  L       + E+ K+ +E
Sbjct: 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 9e-07
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 13  LQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE 72
           L+ EI  L       +  K++E E + EE+   +E E+   ++ +++ E EI   EE+ +
Sbjct: 299 LEAEIASL----ERSIAEKERELE-DAEERLAKLEAEIDKLLAEIEELEREI---EEERK 350

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
           RR++  ++ ++  KE+  DL A L+ V +     + E K    + +KL  +   L+    
Sbjct: 351 RRDKLTEEYAEL-KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK---R 406

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 192
           E+D+++ E  +   ++ +    +   E + +E   L+ + + +    + Q+  L    E 
Sbjct: 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINE---LEEEKEDKALEIKKQEWKL----EQ 459

Query: 193 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 238
           L  D  K+E+E   L E+ D + KE  K+  E  + E    ++EER
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 47/254 (18%), Positives = 103/254 (40%), Gaps = 14/254 (5%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMR----------SKISALDQQEFEIS 65
           ++ + + +    L+  +Q  E   ++ +   EEE            ++I++L++   E  
Sbjct: 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKE 314

Query: 66  HREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 125
              E  E R   L+ + D++  +  +L   ++  ++R   +  E  +L+ E + L A+ E
Sbjct: 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374

Query: 126 SL----QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 181
            +       + E+     +  + + +I E  ++L   +EE   L    + L   I     
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434

Query: 182 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241
           +   L +E ED   + +K E + E L     +  +E   + +E  ++EK     +  L +
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

Query: 242 EECAMRDYVQREIE 255
            E   R   +R   
Sbjct: 495 AEAQARASEERVRG 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 14/235 (5%)

Query: 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 228
                 +++  R + E L +E   LQ +  + E     LDE   E++    KI + +K++
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENR---LDELSQELSDASRKIGEIEKEI 725

Query: 229 EKL--QHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLS--EKAKNDRR 284
           E+L  +    +   +E       +++EIE ++ + +  EA +   +  L   E+A ND  
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785

Query: 285 KMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEI 344
             L    +  +  E   L    +    ++ R R  E+K    LN +   KE  E EIQE+
Sbjct: 786 ARLSHSRIPEIQAELSKLE---EEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQEL 838

Query: 345 KSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 399
           + +R  L+++   ++   E L  ++  + ++++EL+   R L       K+E++ 
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 51.3 bits (124), Expect = 1e-06
 Identities = 32/124 (25%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 116 EKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQ 175
           E +   A++E+ +IL+    + E+   +  L+ +EE  KL+ NE EK        +L+++
Sbjct: 30  EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLR-NEFEK--------ELRER 80

Query: 176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSA 235
               +  ++ LL++ E+L +  E  EK  E L++K  E+ ++Q+++  ++++LE+L    
Sbjct: 81  RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140

Query: 236 EERL 239
            + L
Sbjct: 141 LQEL 144

Length = 520

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 54/224 (24%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 12  LLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQ--QEFEISHREE 69
            L+ +++KL +    + + K++    +L+E+ + +E+ ++     L++           E
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELE 589

Query: 70  KLERREQALDKKSDRVKEKENDLAARLKSVKEREKF--VKAEEKKLELEKQKLIADKESL 127
           +L  R + L KK   ++E+ + L   L+S++  E    ++  E++LE E +KL    E  
Sbjct: 590 ELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELE 649

Query: 128 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLL 187
           ++L+  ++++E +  + E +I+ E Q+++  E+ + +L  L+ QL++++E  R + E LL
Sbjct: 650 ELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELE-QLEEELEQLREELEELL 708

Query: 188 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL 231
           K+  +++Q  E+ E        + +E+ KE EK+    + LE+L
Sbjct: 709 KKLGEIEQLIEELES----RKAELEELKKELEKLEKALELLEEL 748

Length = 908

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 51.1 bits (122), Expect = 3e-06
 Identities = 64/341 (18%), Positives = 130/341 (38%), Gaps = 15/341 (4%)

Query: 9    IYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEF-EISHR 67
               L + E  K  + +      K +  + EL   +    ++  ++   L +Q+  E    
Sbjct: 693  NEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEE 752

Query: 68   EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESL 127
            EEK   +++  +++   +  KE +LA   +  ++ +   + EEK    E+          
Sbjct: 753  EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEE---------- 802

Query: 128  QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLL 187
            ++  +E +  E     +E Q+  E ++    EE +   L L+ + K +       + L  
Sbjct: 803  ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE 862

Query: 188  KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247
            +  ++        ++E     + +DE+  ++EK  +EKK+LE+         +KE     
Sbjct: 863  EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKEN---E 919

Query: 248  DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDK 307
               +   EAI L K   E      +    ++ + D ++  EE   +R+    E L   + 
Sbjct: 920  IEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERN-KRLLLAKEELGNVNL 978

Query: 308  MEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSER 348
            M     E       K E     +   K+    EI E   +R
Sbjct: 979  MAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 50.2 bits (121), Expect = 3e-06
 Identities = 37/160 (23%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 37  LELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSD---RVKEKENDLA 93
            E EE+ K I EE + +  A+ +        E  LE +E+    +++    ++E+ N+L 
Sbjct: 34  KEAEEEAKRILEEAKKEAEAIKK--------EALLEAKEEIHKLRNEFEKELRERRNELQ 85

Query: 94  ARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 153
              K + ++E+ +  + + LE  +++L   ++ L+  + E+++ E E  +   +  +E +
Sbjct: 86  KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145

Query: 154 KL-KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 192
           ++  +  EE  E+L     L++  E  RH+  +L+KE E+
Sbjct: 146 RISGLTAEEAKEIL-----LEKVEEEARHEAAVLIKEIEE 180

Length = 520

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 50.8 bits (121), Expect = 3e-06
 Identities = 72/407 (17%), Positives = 179/407 (43%), Gaps = 44/407 (10%)

Query: 29   DAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEK 88
            +A+ QEF  +L+ K +   ++++S  S L ++E            R+  +D K   + E 
Sbjct: 690  EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL 749

Query: 89   ENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 148
             N L    + ++  +  ++ +E  L      ++ ++ES ++   ++  +  E  Q EL+ 
Sbjct: 750  RNKLQKVNRDIQRLKNDIEEQETLLG----TIMPEEESAKVCLTDVTIM--ERFQMELKD 803

Query: 149  QEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 208
             E     +  + + S+L R   Q+ Q+ +  +H+ + ++ + E  ++  +  +++ + L 
Sbjct: 804  VERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863

Query: 209  EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM 268
             K +E+  E+ +I    ++ ++ +    E   + +  +R+    + +   L+    +   
Sbjct: 864  SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923

Query: 269  RHEQLVLSEKAKN--------------------------------DRRKMLEEFEMQRMN 296
              E+L+ S++  N                                D     +E E+  +N
Sbjct: 924  EKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVN 983

Query: 297  -QEAELLNRRDKMEKELQERTRTFEEK--RERVLNDIAHLKEVAEGEIQEIKSERDQLEK 353
             Q  E    ++K+ ++++   +  + +  +ER L D   L++  E E++E++ E  Q  K
Sbjct: 984  AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKR-ENELKEVEEELKQHLK 1042

Query: 354  EKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 400
            E  +++V + K + Q+L   ++ID +        G ++ +++E + F
Sbjct: 1043 EMGQMQVLQMKQEHQKL--EENIDLIKRNHVLALGRQKGYEKEIKHF 1087

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 50.4 bits (121), Expect = 4e-06
 Identities = 78/367 (21%), Positives = 178/367 (48%), Gaps = 50/367 (13%)

Query: 36  ELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAAR 95
           ELE  EK     EE++ +I  L+++   +   + KLE + + L+++ + +K++  +L  +
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 96  LKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQE-ECQK 154
           +K +KE ++  +   K  E  ++      + L+ ++  + ++E E    E +I+E E ++
Sbjct: 282 VKELKELKEKAEEYIKLSEFYEEY----LDELREIEKRLSRLEEEINGIEERIKELEEKE 337

Query: 155 LKINE--EEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 212
            ++ E  ++  EL +   +L+++ E Y   +E   K+ E  +  +       E L+++ +
Sbjct: 338 ERLEELKKKLKELEKRLEELEERHELY---EEAKAKKEELERLKKRLTGLTPEKLEKELE 394

Query: 213 EINKEQEKIADEKKKLE----------KLQHSAEERLKK----------------EECAM 246
           E+ K +E+I +E  K+           K    A E LKK                 +  +
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELL 454

Query: 247 RDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL-NRR 305
            +Y   E++ I  + +  E   R     L ++ +   + + +E E+ ++ + AE L    
Sbjct: 455 EEY-TAELKRIEKELKEIEEKERK----LRKELRELEKVLKKESELIKLKELAEQLKELE 509

Query: 306 DKMEK----ELQERTRTFEEKRERVLN---DIAHLKEVAEGEIQEIKSERDQLEKEKHEV 358
           +K++K    EL+++   +E+ +E+++    +I  LK+  E +++E+K +  +LEK+  E+
Sbjct: 510 EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDEL 568

Query: 359 KVNREKL 365
           +    +L
Sbjct: 569 EEELAEL 575

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.7 bits (119), Expect = 6e-06
 Identities = 79/387 (20%), Positives = 178/387 (45%), Gaps = 37/387 (9%)

Query: 17  IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
           ++++L DQR  LD  + + E   E++ K + E +    S L + + EI   EE+ E+  +
Sbjct: 178 VERVLSDQRGSLDQLKAQIE---EKEEKDLHERLNGLESELAELDEEIERYEEQREQARE 234

Query: 77  ALDKKSDRVKEKENDLAARLKSVKE-----REKFVKAEEKKLELEKQKLIADKESLQILK 131
             D+  + ++E E      L++++      RE   + E ++ EL  +++   +E L+ L+
Sbjct: 235 TRDEADEVLEEHEERR-EELETLEAEIEDLRETIAETEREREEL-AEEVRDLRERLEELE 292

Query: 132 VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 191
            E D + +E    +   +    + +  E+   EL     + +   + +  + E L ++ +
Sbjct: 293 EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352

Query: 192 DLQQDREKFEKEWEVLDEK----RDEINKEQEKIADEKKKLEKLQHS---AEERLKKEEC 244
           DL++  E+  +E   L+ +    R+ +   +E+I + ++++E+L+     A   L   E 
Sbjct: 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE- 411

Query: 245 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAE---- 300
              + ++ E + +R  +   EAT+R  +  + E        +LE  +     Q  E    
Sbjct: 412 DFLEELREERDELREREAELEATLRTARERVEEA-----EALLEAGKCPECGQPVEGSPH 466

Query: 301 ---LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGE--IQEIKSERDQLEK-- 353
              +   R+++E EL+      EE+ E V   +   +++ E E  I+ ++  R+ LE+  
Sbjct: 467 VETIEEDRERVE-ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELI 525

Query: 354 EKHEVKVNREKLQEQQLGMRKDIDELD 380
            +    +  ++ + ++L  R+   EL+
Sbjct: 526 AERRETIEEKRERAEEL--RERAAELE 550

Length = 880

>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

 Score = 49.3 bits (118), Expect = 8e-06
 Identities = 54/290 (18%), Positives = 97/290 (33%), Gaps = 30/290 (10%)

Query: 17  IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
           ++KL D      +  +    LE   +                 +    +    +  +   
Sbjct: 683 VEKLEDVLNEFKEQSEDIGYLEDAGELLRDFAPELEIKVERGNKIL--AKLFGRFLKAFN 740

Query: 77  ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKL-----ELEKQKLIADKESLQILK 131
           AL K  +     E ++      +K R +  K  + K       L   + I DKES  I  
Sbjct: 741 ALKKLYEFAYTLEEEIQYLEDLLKARLE--KDYQSKYLDLIDNLNDAREIKDKESKAIDL 798

Query: 132 VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 191
            +ID       +QE+ I    + L+   ++      L+  +++ I+ +           E
Sbjct: 799 DDIDFELELIGKQEINIDYILELLQTFNDKNGAYESLKELIERIIKEWI----------E 848

Query: 192 DLQQDREKFEKEWEVLDE-----KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECA- 245
           DL+Q + K  +            K D   K +E     KK+ E  Q + EE L +EE A 
Sbjct: 849 DLRQKK-KLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAF 907

Query: 246 MRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRM 295
             D      +      E  E   + + L    + KN      +E    ++
Sbjct: 908 YDDLALNGGKLPENGTELVEKLAKEKSL----REKNKDDWKAKEEVEAKL 953

Length = 962

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 49.2 bits (118), Expect = 8e-06
 Identities = 68/370 (18%), Positives = 154/370 (41%), Gaps = 41/370 (11%)

Query: 38  ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKK--SDRVKEKENDLAAR 95
           E+E + + +++E++     ++Q E EI  +EE+LE+ +     K      K+ +++L+  
Sbjct: 92  EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEA 151

Query: 96  LKSVKEREKF---VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEEC 152
           LK +  ++ F   +  E K + L    L++ +E    LK +I  + S N  +   +    
Sbjct: 152 LKGLNYKKNFKEKLLKELKSVILNASSLLSLEE----LKAKIKTLFSSNKPELALL--TL 205

Query: 153 QKLKINEEEKSELLRLQSQLKQ--QIETYRHQQEL---------LLKEHED-------LQ 194
             +  +E E++E+L           I    +               +E +        + 
Sbjct: 206 SVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTIT 265

Query: 195 QDREKFEKEWEVLDEKRDEINKE-QEKIADEKKKLEKLQHSAEERLKK--EECAMRDYVQ 251
           ++R         L+   DE  +E  E++ +   K E     A E L+   +        +
Sbjct: 266 EER------KAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFK 319

Query: 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKM-LEEFEMQRMNQEAELLNRRDKMEK 310
            ++E ++   EA E  +      L EK K+    + LE      +    ++++  +++ +
Sbjct: 320 LDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESIT-DLIESINDIIDAINELIR 378

Query: 311 ELQERTRTFEEKRERVLNDI-AHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQ 369
           E  E+    ++++ +    +  HL    + +I   + E+  LEK  + ++   ++L+ + 
Sbjct: 379 EHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEI 438

Query: 370 LGMRKDIDEL 379
             + K+I EL
Sbjct: 439 KALEKEIKEL 448

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 47/210 (22%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 198 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI 257
           + +E  ++ L E   EI +  E++    K+ E ++   +E+ K+ E  +R+  +   E  
Sbjct: 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP 217

Query: 258 RLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR 317
            L +E  +     ++L   ++   +  K LE  E     +  E +   ++  +EL++   
Sbjct: 218 ELREELEKLEKEVKELEELKEEIEELEKELESLE-GSKRKLEEKIRELEERIEELKKEIE 276

Query: 318 TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDID 377
             EEK +     +  LKE AE E  ++    ++   E  E++    +L+E+  G+ + I 
Sbjct: 277 ELEEKVKE----LKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331

Query: 378 ELDILCRRLYGDREQFKREKERFLEFVEKH 407
           EL+    RL   +++ K  ++R  E  E+H
Sbjct: 332 ELEEKEERLEELKKKLKELEKRLEELEERH 361

Length = 880

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 49.2 bits (117), Expect = 1e-05
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 13/262 (4%)

Query: 13  LQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE 72
           L      L  ++        +    EL   R+   ++M+S+   L   +  ++  +  L 
Sbjct: 648 LHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR 707

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
             E  +++      E EN  ++    +  RE      +   EL  Q     K        
Sbjct: 708 ELETHIEEYDREFNEIENASSSLGSDLAARE--DALNQSLKELMHQARTVLKAR-----T 760

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLR----LQSQLKQQIETYR-HQQELLL 187
           E     +E     LQ   E   L    +  + L      L   L+ +I       +++L 
Sbjct: 761 EAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILN 820

Query: 188 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL-QHSAEERLKKEECAM 246
            + E L Q+ E+F    E       EI  +  K  +  K+L +L Q  A+     ++   
Sbjct: 821 LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNG 880

Query: 247 RDYVQREIEAIRLDKEAFEATM 268
            + ++ + +   L K   E T+
Sbjct: 881 INQIKIQFDGDALIKFLHEITL 902

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 60/337 (17%), Positives = 136/337 (40%), Gaps = 25/337 (7%)

Query: 9   IYGLLQVE-IQKLLDDQRAIL-DAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISH 66
           I  LL ++ I +L  D   +L   K+ E    +  + +++E E++ +    +    EI+H
Sbjct: 175 IEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAH 234

Query: 67  REEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKES 126
              +LE  +++L+    + + +  DL    + ++ + K ++A  K    + ++L AD   
Sbjct: 235 LRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLP 294

Query: 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE-LLRLQSQLKQQIETYRHQQEL 185
           L ++   +D       + +LQ +E+ Q+ ++ +EE  E    L   L +      H +E+
Sbjct: 295 LLLIPNLLDST-----KAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEI 349

Query: 186 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK-KKLEKLQHSAEERLKKEEC 244
             +  E  +      E    +   +  ++    +++  E      +L     E  ++   
Sbjct: 350 AAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEEL-- 407

Query: 245 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNR 304
                V ++I  I   +E           +L E  +        E E++ + ++ E L  
Sbjct: 408 ---AEVDKKISTIP-SEEQIAQ-------LLEELGEAQNELFRSEAEIEELLRQLETLKE 456

Query: 305 R-DKMEKELQERTRTFE--EKRERVLNDIAHLKEVAE 338
             + + K L E+T+      + ER +      K+  +
Sbjct: 457 AIEALRKTLDEKTKQKINAFELERAITIADKAKKTLK 493

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 53/284 (18%), Positives = 114/284 (40%), Gaps = 26/284 (9%)

Query: 106 VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKIN------- 158
           V  E +KL+ + ++L++ +  LQ L  E+   E   A+++ + QE   +L+         
Sbjct: 244 VAPEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQ 303

Query: 159 -EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR-EKFEKEWEVLDEKRDEINK 216
            +E + EL +  S    ++   R + ELL  +    +    E+ + + + L   R E+ +
Sbjct: 304 LKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEE 363

Query: 217 EQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLS 276
            + ++     K + +Q   E                  + I+   E            + 
Sbjct: 364 VEARLDALTGKHQDVQRKYERL---------------KQKIKEQLERDLEKNNERLAAIR 408

Query: 277 EKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEV 336
           E+    +  + E+ +        +L   + +  +E  E        ++R+ +  A  +E+
Sbjct: 409 EEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEEL 468

Query: 337 AEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 380
            + EI +   E+ Q E+E+ E  V + + + +QL  RK  DE  
Sbjct: 469 EQLEINDEALEKAQEEQEQAEANVEQLQSELRQL--RKRRDEAL 510

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 51/313 (16%), Positives = 102/313 (32%), Gaps = 28/313 (8%)

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
           RR  A   +   + E E +       +   E    A+  +LE+E+Q      E  + +K+
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETE---IAIAEANRDAKLVELEVEQQPAGKTAEQTREVKI 269

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 192
            + + E+E A  + +              ++E   + ++   Q E  + +QE+   +  +
Sbjct: 270 ILAETEAEVAAWKAE-----------TRREAEQAEILAEQAIQEEKAQAEQEVQHAKALE 318

Query: 193 L----------QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKE 242
                      Q++ E   +E            +E+ K A    +    Q  A     +E
Sbjct: 319 AREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARE 378

Query: 243 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL 302
                   Q  + A     E  +  +         +A+    ++  E E  R   +AE  
Sbjct: 379 TEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAE 438

Query: 303 NRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSER----DQLEKEKHEV 358
            +R   E           E  + ++  +  + E A   ++ I SE+              
Sbjct: 439 AKRALAEAIQVLGDAAAAELFKALVQALPEVAEEAAQPMKNIDSEKVRVIGGANGGSTAG 498

Query: 359 KVNREKLQEQQLG 371
           KVN   L    + 
Sbjct: 499 KVNAGGLGLLLMA 511

Length = 548

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 72/421 (17%), Positives = 137/421 (32%), Gaps = 49/421 (11%)

Query: 18  QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 77
            + L  Q A    +Q+  +   E    +I    + +       + E +   ++ E++ Q 
Sbjct: 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ-ESAQSLKEREQQLQT 477

Query: 78  LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLI---ADKESLQILKVEI 134
            ++   +   K+  + ARL  ++E    +          +Q +         +Q  +   
Sbjct: 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537

Query: 135 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 194
            Q+E+       Q+  E ++    +E+  E+ +  S L Q     +     L      LQ
Sbjct: 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ 597

Query: 195 QDREK-FEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK------------ 241
              EK  E E  +  E+   + K Q +   +  +L   Q S E  LK             
Sbjct: 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ 657

Query: 242 ---EECAMR----------------DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKND 282
               E A+                   +Q E E +   KE         + + +   + D
Sbjct: 658 ERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYD 717

Query: 283 RR----KMLEEFEMQRMNQEAELLNR-----RDKMEKELQERTRTFEEKRERVLNDIAHL 333
           R     +         +    + LN+       +    L+ RT       E V   +   
Sbjct: 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG 777

Query: 334 KEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 393
            E++     EI+      E++ H +K       E    +  D D L++ C  L  + EQF
Sbjct: 778 AELSHLA-AEIQFFNRLREEDTHLLK---TLEAEIGQEIPSDEDILNLQCETLVQEEEQF 833

Query: 394 K 394
            
Sbjct: 834 L 834

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 5e-05
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 27/348 (7%)

Query: 12   LLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKL 71
              + E  K  D+ +   + K+ +   + EE +K+ E++   +    ++ +     + E+ 
Sbjct: 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586

Query: 72   ERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILK 131
            ++ E+A  ++  ++ E+E  + A      E  K    E KK E EK+K+   K+      
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA--- 1643

Query: 132  VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 191
                  E +   +EL+  EE  K+K  EE K              E  + + E   K  E
Sbjct: 1644 ------EEKKKAEELKKAEEENKIKAAEEAKKA------------EEDKKKAEEAKKAEE 1685

Query: 192  DLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251
            D ++  E  +KE     E+  +  + ++K A+EKKK E+L+ + EE   K E A ++  +
Sbjct: 1686 DEKKAAEALKKE----AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741

Query: 252  REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311
             + +A    K+  E           EK   + RK  E    + +++E E   RR +++K+
Sbjct: 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE--KRRMEVDKK 1799

Query: 312  LQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK 359
            +++    F    E        + +  E E   IK   D    +  E  
Sbjct: 1800 IKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847

Length = 2084

>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242)

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 36/224 (16%)

Query: 62  FEISHREEKLERRE-QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL 120
           F I  RE +L+    Q L  K  ++ E++  L    +S++ER+K    E  +L+L+ QKL
Sbjct: 56  FAIGRRERQLKTAAGQLLQTKIRKLTEQDEGLRNIRESIEERQK----ESDQLKLQNQKL 111

Query: 121 -----------IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQ 169
                      I  K   Q L+     ++ EN   ++Q+    Q+     EE  EL R  
Sbjct: 112 VNQLGHARGVFIKTKGRYQKLEELSRHLKEENQCLQIQLDALVQECNEKIEENQELNR-- 169

Query: 170 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD---EKK 226
            +L    ET  +QQEL    +++ Q     F ++  +LD+++  I K + K+ D   E +
Sbjct: 170 -ELA---ETLAYQQEL----NDEYQA---TFVEQHNMLDKRQAYIGKLEAKVQDLMCEIR 218

Query: 227 KLEKLQHSAEERL-KKEECAMRDYVQR---EIEAIRLDKEAFEA 266
            L +L+   +E L  K   A RD V +   E++ I    E  EA
Sbjct: 219 NLLQLESGIKENLPGKPVAASRDVVAQLVSELKKIAFKVENIEA 262

Length = 401

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 31/95 (32%), Positives = 64/95 (67%), Gaps = 8/95 (8%)

Query: 26  AILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRV 85
           A+L+AK+     E+ + R   E E++ + + L +QE  +  +EE L+R++++L+KK + +
Sbjct: 54  ALLEAKE-----EIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESL 108

Query: 86  KEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL 120
           +EKE +LAAR + ++E+E+ +   E+ +E ++Q+L
Sbjct: 109 EEKEKELAARQQQLEEKEEEL---EELIEEQQQEL 140

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 55/319 (17%), Positives = 134/319 (42%), Gaps = 9/319 (2%)

Query: 39  LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKS 98
           +EEK++   EE   +    +  E E      + E RE+   ++    +    +     + 
Sbjct: 26  IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREK 85

Query: 99  VKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKIN 158
            ++ E   + +E++   E  + I +++  +  +    Q +      E   +   +K +  
Sbjct: 86  RRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEK 145

Query: 159 EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ 218
           E E+ E L++    +++ E          +   + ++ +E+ E+E   L  +++E   E+
Sbjct: 146 EREREEELKILEYQREKAEREE-------EREAERRERKEEKEREVARLRAQQEEAEDER 198

Query: 219 EKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEK 278
           E++ + +  L + ++  +ER K++E A +   +R+ + ++  +E               +
Sbjct: 199 EELDELRADLYQEEYERKERQKEKEEAEKR--RRQKQELQRAREEQIEEKEERLQEERAE 256

Query: 279 AKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAE 338
            + +R +MLE+       ++     RR K  +  +E  +  EEK ER   +     E  E
Sbjct: 257 EEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGE 316

Query: 339 GEIQEIKSERDQLEKEKHE 357
              +E    + ++E+E+  
Sbjct: 317 RLREEEAERQARIEEERQR 335

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 36/153 (23%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 24  QRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSD 83
           Q A  +A+++     LE K   + E  + +  A  ++E E+   EE+L ++E+ LD +++
Sbjct: 40  QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE-ELQREEERLVQKEEQLDARAE 98

Query: 84  RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ 143
           ++   EN L  R K++  RE  ++  EK+L+ E  + +A     Q  K+ +  +++E  +
Sbjct: 99  KLDNLENQLEEREKALSARELELEELEKQLDNELYR-VAGLTPEQARKLLLKLLDAE-LE 156

Query: 144 QELQIQEECQKLKINEEEKSELLRLQSQLKQQI 176
           +E   + +  + + + E + +   + +Q  Q+I
Sbjct: 157 EEKAQRVKKIEEEADLEAERKAQNILAQAMQRI 189

Length = 508

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 7/164 (4%)

Query: 138 ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 197
           E+E   QE Q + E +      E K  LLR ++Q +Q+    R ++E L +E E L Q  
Sbjct: 34  EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEA---RREREELQREEERLVQKE 90

Query: 198 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI 257
           E+ +   E LD   +++ + ++ ++  + +LE+L+   +  L      +     R++   
Sbjct: 91  EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNEL-YRVAGLTPEQARKLLLK 149

Query: 258 RLDKEA-FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAE 300
            LD E   E   R ++  + E+A  +  +  +    Q M + A 
Sbjct: 150 LLDAELEEEKAQRVKK--IEEEADLEAERKAQNILAQAMQRIAS 191

Length = 508

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 82/428 (19%), Positives = 180/428 (42%), Gaps = 53/428 (12%)

Query: 18  QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 77
           +  L+  R I+ + + E +  L+ + K IE    SKI  LD +   +  R++++E+    
Sbjct: 230 EAQLESSREIVKSYENELD-PLKNRLKEIEH-NLSKIMKLDNEIKALKSRKKQMEKDNSE 287

Query: 78  LDKKSDRV--------KEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 129
           L+ K ++V         +  ++    ++  +      + E +KL  E++ L  +K  L +
Sbjct: 288 LELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347

Query: 130 ----LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL-------------RLQSQL 172
               L+++ D+ +     ++  IQ    +L+++  E+                 R + + 
Sbjct: 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEA 407

Query: 173 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ 232
           K   +     Q     + E   + R++ +     ++ K++ + K+QE++    K+L++L+
Sbjct: 408 KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467

Query: 233 HSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVL-SEKAKNDRRKMLEEFE 291
            S++  L+ ++    +  + E E  + +K +   T++ E   L +EKA  DR+    + E
Sbjct: 468 GSSDRILELDQ----ELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQE 523

Query: 292 MQRMNQEAELLNR-----RDKMEKELQERTRTFEEKRE-----------RVLNDIAHLK- 334
           M+++N       +     +DKM+K+ Q R        E           + L D  H K 
Sbjct: 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS 583

Query: 335 ---EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDRE 391
                    + ++  E   LE+ K+ +    E  +EQ       + ++    +    D E
Sbjct: 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-CGSQDEESDLE 642

Query: 392 QFKREKER 399
           + K E E+
Sbjct: 643 RLKEEIEK 650

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 13/155 (8%)

Query: 14  QVEIQKLLDDQRAILDAKQQEFELELEEK------RKSIEEEMRSKISALDQQEFEISHR 67
           + E       + A  ++K  + EL LE K      R+ IE+E +S+   L Q E  ++ R
Sbjct: 50  KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109

Query: 68  EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKA--EEKKLELEKQKLIADKE 125
              L+R+++ L  K   ++ KE  L  + K + ERE+ V+   E+KK ELE+   ++  E
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169

Query: 126 SLQILKVEID-----QIESENAQQELQIQEECQKL 155
           + +I+  E +     +I +   + E ++++   K+
Sbjct: 170 AREIILAETENKLTHEIATRIREAEREVKDRSDKM 204

Length = 535

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 61/332 (18%), Positives = 139/332 (41%), Gaps = 26/332 (7%)

Query: 49   EMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE-NDLAARLKSVKEREKFVK 107
            E+ S ++ + +      +     E   Q LD++ + + E   N L  +L      E  ++
Sbjct: 3859 ELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLE 3918

Query: 108  AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLR 167
             E+K  E   Q    ++  L   + +   +E ++ Q++   +E    + I++E + ++  
Sbjct: 3919 TEQKSNE---QSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975

Query: 168  LQSQLKQQIETYRHQQELLL-KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 226
              SQ   + E     ++L L ++  D+ +D +  + + E  DE ++E + E+++   ++ 
Sbjct: 3976 NNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDED 4035

Query: 227  KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKM 286
             LE      E     E+    D+     +  +++++ FE     E +  +E++  D  K 
Sbjct: 4036 PLE------ENNTLDEDIQQDDFSDLAEDDEKMNEDGFE-----ENVQENEESTEDGVKS 4084

Query: 287  LEEFEMQRMNQEAELLNRRDKMEKE--LQERTRTFEEKRERVLNDIAHLKEVAEGEIQEI 344
             EE E Q    E + ++   KM+ +          E   + ++ +   L E  E  ++  
Sbjct: 4085 DEELE-QGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGE--EDGVRGN 4141

Query: 345  KSERDQLEKEKHEVKVNREKLQE-----QQLG 371
             +   + E+ + +    +E + E     Q LG
Sbjct: 4142 GTADGEFEQVQEDTSTPKEAMSEADRQYQSLG 4173

Length = 4600

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 45/247 (18%), Positives = 103/247 (41%)

Query: 188 KEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247
           K+ E L++  E+ E   E++ +  +   +E +     KK LE  Q   +  L++E     
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYL 230

Query: 248 DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDK 307
           DY++   E I L +E         +    E  K +        E +   +E +L     K
Sbjct: 231 DYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELK 290

Query: 308 MEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQE 367
           +  + +E  ++   K ER   D     + +E E+++++ E  + ++E  E++   ++L+ 
Sbjct: 291 LLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEI 350

Query: 368 QQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQL 427
           ++    ++ ++L+ L  +L    E+   +K+   E +      K     ++       +L
Sbjct: 351 KREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKL 410

Query: 428 PDDEARN 434
             + +  
Sbjct: 411 LLELSEQ 417

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 74/416 (17%), Positives = 155/416 (37%), Gaps = 61/416 (14%)

Query: 15  VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE---EMRSKISALDQQEFEISHREEKL 71
           V  ++ L +++      +     +L      ++E   E+  ++SA + +        E L
Sbjct: 273 VADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELL 332

Query: 72  ERREQALDKKS--------DRVKEKENDLA---ARLKSVKEREKFVKAE----EKKLELE 116
           E ++ A +           D++    ++L    ARL ++  + + V+ +    ++K++ +
Sbjct: 333 EDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQ 392

Query: 117 KQKLIAD-KESLQILKVEIDQ----IESENAQQELQI--QEECQKLKINEEE---KSELL 166
            ++ +    E L  ++ E D+    IE +    E Q+  Q E  KL+ NEEE   +  L 
Sbjct: 393 LERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLG 452

Query: 167 RLQSQLKQ----------------QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 210
           RL+ +L                   +E  + +QE      E LQ +  +  K  +   E 
Sbjct: 453 RLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEA 512

Query: 211 RDEINKEQEKIADEKKKLEKL----QHSAEERLKKEECAMRDYVQREIE---------AI 257
                +   ++     +LE        S    L+ E     + + + I            
Sbjct: 513 LQRAERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDP 572

Query: 258 RLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDK---MEKELQE 314
           +L + +   T+    L L      D      E   +    E  L +   K    E++L +
Sbjct: 573 QLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQ 632

Query: 315 RTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL 370
                EE ++R   +     + A  ++Q +++E+  L+ +       R++  E QL
Sbjct: 633 ANAELEE-QKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQL 687

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 41/233 (17%)

Query: 13  LQVEIQKLLDDQR---AILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREE 69
           L+ +I+KL    +      D    +  L+LEE+   +E E++     L+  E EI+  EE
Sbjct: 43  LESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEE 102

Query: 70  K---LERREQALDKKSDRVKEKEN---DLAARLKSVKEREKFVKAEEKKLELEKQK-LIA 122
               L+  +  LD+  + + E  N   D      +   +  FV     + +LE  +  + 
Sbjct: 103 WLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELW 162

Query: 123 DKESLQILKVEIDQIESEN-----------AQQELQIQEECQKLKINEEEKSELLRLQSQ 171
                 I + EI++   +             +   ++++          +  E    +S+
Sbjct: 163 RACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSE 222

Query: 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE 224
           L  ++           K  E+LQ           VL++    + K   KIADE
Sbjct: 223 LISKVN----------KRIEELQ----------RVLEQTESHLEKVLVKIADE 255

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 14  QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
             E+++ ++  +  L+ ++   E ELE+    +EE        L     E+   EE  E 
Sbjct: 325 LEELKEKIEALKEELEERETLLE-ELEQLLAELEEAKEELEEKLSALLEEL---EELFEA 380

Query: 74  REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
             + L +    + E  N+L    + ++  E+ ++   ++LE  K++L   +  L+ L+ E
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440

Query: 134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
           ++++  E  + E Q++E   +LK  E E +EL     +L++++ +   + + L  E    
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Query: 194 QQDREKFEK 202
           Q  R   E 
Sbjct: 501 QGVRAVLEA 509

Length = 1163

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 50/354 (14%), Positives = 126/354 (35%), Gaps = 26/354 (7%)

Query: 31  KQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA--LDKKSDRVKEK 88
            Q+    E + K++ + +++R++I  L  QE  +   +E++ R  +A  L      V + 
Sbjct: 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQI 305

Query: 89  ENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 148
           E         ++ +         KL +++   +  + S++  +  +  + S+        
Sbjct: 306 EQQAQRIHTELQSKM----RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH 361

Query: 149 QEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 208
           +      +I+ ++ +    +   L+QQ  T   + + L KE + LQ+++   +       
Sbjct: 362 EVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKELDILQREQATIDTR----- 415

Query: 209 EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM 268
                       +  +    +K Q   +   +    A+    Q E       +E+ ++  
Sbjct: 416 ------TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK 469

Query: 269 RHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLN 328
             EQ + +++  + +    +   + R+ +  E           L          R+ + N
Sbjct: 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEE-------PCPLCGSCIHPNPARQDIDN 522

Query: 329 DIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDIL 382
                + +  GE Q         E   H++   R++    +  M++      IL
Sbjct: 523 PGPLTRRMQRGE-QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL 575

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 60/308 (19%)

Query: 77  ALDKKSDRVKEKENDL-AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEID 135
            L  + D V  + +D     L+ ++E EK +K  EK    E  ++       ++L    D
Sbjct: 13  GLKSELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVL----D 68

Query: 136 QIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195
            + S        ++    +L I  EE  +L                     LK  E++ +
Sbjct: 69  YLRS--------VKGLEGRLFILPEEVEKLEAE------------------LKSLEEVIK 102

Query: 196 DREKF----EKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE----RLKKEECAMR 247
             EKF    E+    L+E+  E+++E E + D  ++LE L +   +    R  K      
Sbjct: 103 PAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRL 162

Query: 248 DYVQRE-IEAIR--LDKEAFEATMRHEQ------LVLSEKAKNDRRKM----LEEFEMQR 294
             V+RE +EA+   ++ E        E          +E      + +     E +E+  
Sbjct: 163 GLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPE 222

Query: 295 MN-----QEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSE-R 348
            +       +EL     +++ EL+      E   E++  ++  ++E+   EI++   +  
Sbjct: 223 FDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREIL--EIEKALGDVL 280

Query: 349 DQLEKEKH 356
            +L + ++
Sbjct: 281 SKLARTEY 288

Length = 660

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 44/273 (16%), Positives = 107/273 (39%), Gaps = 42/273 (15%)

Query: 21  LDDQRAILDAKQQEFEL-ELEEKRKSIE-------EEMRSKIS-ALDQ----QEFEISHR 67
           L   +  +     E  +  +E+ ++ +          + +K+S ALD+           R
Sbjct: 14  LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73

Query: 68  EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL------- 120
           EEK +   ++L++    V+E+   +   +K ++E    ++ E K+LE E ++L       
Sbjct: 74  EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133

Query: 121 --IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET 178
             ++     + + V +  +  +  ++     +      I+ ++    + +    +   E 
Sbjct: 134 LDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEV 193

Query: 179 YRHQQELLLKEHEDLQQDREKFEKEWEVLDEK--RDEINKEQEKIADEKKKLEKLQHSAE 236
                   LK+          FE+  E+ +E    + I + +E++ + +K+ E L    +
Sbjct: 194 EE-----ELKKLG--------FERL-ELEEEGTPSELIREIKEELEEIEKERESLLEELK 239

Query: 237 ERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269
           E  KK      + +    E + ++ E  EA  +
Sbjct: 240 ELAKKYL----EELLALYEYLEIELERAEALSK 268

Length = 646

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 33/218 (15%)

Query: 13  LQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEK-- 70
           L  ++ + LD  R+ L       E + +   KS+EE ++     L++ E EI   EE+  
Sbjct: 51  LLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEIS 110

Query: 71  -LERREQALDKKSDRVK---------EKENDL------AARLKSVKEREKFVKAEEKKLE 114
            LE   + L+++ +R++                        +   K  E  ++++ + +E
Sbjct: 111 ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVE 170

Query: 115 LEKQK-------LIADKESLQILKVEIDQIESENAQQELQIQEEC---QKLKINEEEKSE 164
                       ++  KE    ++ E+ ++      + L+++EE    + ++  +EE  E
Sbjct: 171 YISTDKGYVYVVVVVLKELSDEVEEELKKLG----FERLELEEEGTPSELIREIKEELEE 226

Query: 165 LLRLQSQLKQQIETYR-HQQELLLKEHEDLQQDREKFE 201
           + + +  L ++++       E LL  +E L+ + E+ E
Sbjct: 227 IEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264

Length = 646

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 65/358 (18%), Positives = 148/358 (41%), Gaps = 40/358 (11%)

Query: 32  QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 91
            +  +LE    R  +E   +S  S  D     +   E       +      D  +  +  
Sbjct: 70  DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQ 129

Query: 92  LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 151
           L   +  ++  EK +      L L + +L A ++  +IL  E + ++ +    E+++ E 
Sbjct: 130 LEDLVGMIQNAEKNI------LLLNQARLQALEDLEKILT-EKEALQGKINILEMRLSET 182

Query: 152 CQKLKINEEEK-------SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 204
             ++K+  +EK        +L +L+++L  +  T       L KE + L+++    + + 
Sbjct: 183 DARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDI 242

Query: 205 EVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAF 264
           + L  +  E+ + +E++     KLEK +   +  L++ E       +   +   L  + +
Sbjct: 243 QFLKAELIEVAETEERVF----KLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCW 298

Query: 265 EATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE 324
              + + Q +L ++A N   K     +     Q  +L ++ DK+E  L+E     +    
Sbjct: 299 WEKVENLQDLL-DRATNQVEKAALVLD-----QNQDLRDKVDKLEASLKE-ANVSKFSSY 351

Query: 325 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHE----VKVNREKLQEQQLGMRKDIDE 378
           +V  ++           Q++K   ++L+   HE    +++ +E ++E Q  + K  +E
Sbjct: 352 KV--ELLQ---------QKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398

Length = 977

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 198 EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI 257
            K EK  E L+E  + I +    I +++++LE+L+    ER K E            +A+
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLR---REREKAER----------YQAL 216

Query: 258 RLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR 317
             +K  +E            K K    +  E  E Q  + E EL    +K+ +E+ E  +
Sbjct: 217 LKEKREYEGYEL-------LKEKEALERQKEAIERQLASLEEEL----EKLTEEISELEK 265

Query: 318 TFEEKRERVLNDIAHLKEVAEGE-------IQEIKSERDQLEKEKHEVKVNREKLQEQQL 370
             EE  + +      +K++ E E       I E+++E   LE+   E +   E  +E+  
Sbjct: 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325

Query: 371 GMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406
            +  +ID+L      L  + E+ ++ +++  E   +
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 45/288 (15%), Positives = 106/288 (36%), Gaps = 25/288 (8%)

Query: 48  EEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 107
           ++++ +I+AL+++  E   +  KLE++ ++L+ +   ++ +  + A  LK ++++   + 
Sbjct: 41  KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100

Query: 108 AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLR 167
           A    LE++++      E  + L  ++  ++          +     L ++ E+    +R
Sbjct: 101 ARLNALEVQER------EQRRRLAEQLAALQ-------RSGRNPPPALLVSPEDAQRSVR 147

Query: 168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA---DE 224
           L             + + L    + L   R +   E   L     E   +Q K+A   +E
Sbjct: 148 LAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE 207

Query: 225 KKKLEK-------LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ-LVLS 276
           +KK                E L+  E  +++ +     A    +EA  A          +
Sbjct: 208 RKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAA 267

Query: 277 EKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER-TRTFEEKR 323
           E  +          E   ++        R ++   +  R  R F +  
Sbjct: 268 EAKRTGETYKPTAPEKMLISSTGGFGALRGQLAWPVTGRILRRFGQAD 315

Length = 420

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 25/151 (16%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 32  QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 91
           Q   +   E++R+   +       +L   + ++     +L+ +   L  +S +++++  +
Sbjct: 150 QTRLKTLAEQRRQLEAQ-----AQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQN 204

Query: 92  LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 151
           LA R  + + R + +       +   Q +       Q    +I Q   + A +  QI+E 
Sbjct: 205 LATRANAAQARTEELARRAAAAQQTAQAI-------QQRDAQISQKAQQIAARAEQIRER 257

Query: 152 CQKLKINEEEKSELLRLQSQLKQQIETYRHQ 182
            ++L+  E  ++ L +  +QL+   + Y   
Sbjct: 258 ERQLQRLETAQARLEQEVAQLEAYYQAYVRL 288

Length = 499

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.4 bits (102), Expect = 5e-04
 Identities = 49/337 (14%), Positives = 113/337 (33%), Gaps = 20/337 (5%)

Query: 47  EEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFV 106
           EE++  ++++  +Q   +  + +++++    L +  +R KE   +L           +  
Sbjct: 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL------QNITVRLQ 597

Query: 107 KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL 166
              EK  E E            + K++ +Q   +      Q  +E              L
Sbjct: 598 DLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTL 655

Query: 167 RLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 226
             Q ++++   + R   + LL   +   Q   K + E E L   ++ + + Q  + + + 
Sbjct: 656 -TQERVREHALSIRVLPKELLASRQLALQ---KMQSEKEQLTYWKEMLAQCQTLLRELET 711

Query: 227 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKM 286
            +E+      E          D   RE    +  KE     M   + VL  + +      
Sbjct: 712 HIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL----MHQARTVLKARTEAHFNNN 767

Query: 287 LEE-FEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIK 345
            E    +Q   + + L        +  +E T   +     +  +I   +++   + + + 
Sbjct: 768 EEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV 827

Query: 346 SERDQLE---KEKHEVKVNREKLQEQQLGMRKDIDEL 379
            E +Q     +EK            +     K + +L
Sbjct: 828 QEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQL 864

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 116 EKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQ 175
             QKL   +  L  LK ++ +++ E    E +I E   +L+  +E+   L  L   L+++
Sbjct: 70  RPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEER 129

Query: 176 IETYRHQQELLLKEHEDLQQD-REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL 231
           +E+     + L KE  +L+QD RE+ E+  E L+  ++ + + QE I + +  LE+L
Sbjct: 130 LESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown]

 Score = 43.1 bits (101), Expect = 6e-04
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 22/227 (9%)

Query: 14  QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
           Q E + +L +  A  + +    E   +   K+   +      A          +E+ L+R
Sbjct: 419 QEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAY---------QEDILQR 469

Query: 74  REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
             Q+  K +   + +E   AA    +  +++       K +   QK +  K   Q   ++
Sbjct: 470 EAQSRGKTAAAERSQEQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLK 529

Query: 134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
            +       Q++LQ Q      K   E K E L   SQL +     +      L      
Sbjct: 530 EEA-----KQRQLQEQ------KALLEHKKETLEYTSQLAE--LLDQQADRFELSAQAAG 576

Query: 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 240
            Q     +   E L +    +NK   ++A     L+ LQ   +    
Sbjct: 577 SQKERGSDLYREALAQNAAALNKALNELAAYWSALDLLQGDWKAGAL 623

Length = 833

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.1 bits (102), Expect = 7e-04
 Identities = 51/296 (17%), Positives = 106/296 (35%), Gaps = 25/296 (8%)

Query: 60   QEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERE-KFVKAEEKKL--ELE 116
            +EF    R +  ++R++ L  K +R   + ++    +K V   E     A++K L  EL+
Sbjct: 983  KEF-YLVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELK 1041

Query: 117  KQKLIADKESLQILKVEIDQIESENAQQ-ELQIQEECQKLKINEEEKSELLRLQ------ 169
            K   +  K+ ++    +I   E E A++ +    E+ ++          LL +       
Sbjct: 1042 KLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTK 1101

Query: 170  ---SQLKQQIETYRHQQELLLKEH------EDLQQDREKFEKEWEVLDEKRDEINK-EQE 219
                +L  ++E    + E L          EDL +  E  E++ EV +++  +  + + +
Sbjct: 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSK 1161

Query: 220  KIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKA 279
                  K  +      E++ KK              + R+D +      R        K 
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEK----RKLDDKPDNKK 1217

Query: 280  KNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKE 335
             N      E+ E Q+   +   + R    +    + +   +E     L+     K 
Sbjct: 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKN 1273

Length = 1388

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 81/387 (20%), Positives = 165/387 (42%), Gaps = 55/387 (14%)

Query: 16   EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE 75
            E+  L   +++I+D K++E   EL  K + +  +++   + +++QE  +     + E  +
Sbjct: 727  EMLGLAPGRQSIIDLKEKEIP-ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK 785

Query: 76   ---------QALDKKSDRVKEKENDLAARLKSVKEREKFV----KAEEKKLELEK----- 117
                     +    +   V+ K    AA+L+             + +EK+ EL+      
Sbjct: 786  VCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKI 845

Query: 118  ---QKLIADK-ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLK 173
               +KLI D+ E +Q LK + ++++SE    +LQI    Q+ +  EE+  EL      L 
Sbjct: 846  ELNRKLIQDQQEQIQHLKSKTNELKSE----KLQIGTNLQRRQQFEEQLVELSTEVQSLI 901

Query: 174  QQIETYRHQQELLLKEHEDLQQDREKF----EKEWEVLDEKRDEINKEQEKIADEKKKLE 229
            ++I+  + Q   L    E  QQ++E+     E   +   +K ++I ++ + I    K +E
Sbjct: 902  REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961

Query: 230  KLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEE 289
                  ++   K++    + V  ++E     +E     MR             R+ +  +
Sbjct: 962  NKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMR-----------LMRQDIDTQ 1010

Query: 290  FEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERD 349
               +R  Q+   L +R+   KE++E  +              HLKE+ + ++ ++K E  
Sbjct: 1011 KIQERWLQDNLTLRKRENELKEVEEELKQ-------------HLKEMGQMQVLQMKQEHQ 1057

Query: 350  QLEKEKHEVKVNREKLQEQQLGMRKDI 376
            +LE+    +K N      +Q G  K+I
Sbjct: 1058 KLEENIDLIKRNHVLALGRQKGYEKEI 1084

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 21  LDDQRAILDAKQQEFELELEEKR--KSIEEEMRSKISALDQQEFEISHREEKLERREQAL 78
           LDD R  L A + E      EKR  ++  E  RS++    Q+   +        +     
Sbjct: 76  LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135

Query: 79  DKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIE 138
            ++  R+ ++  DL  RLK++ E              ++++L A  +SLQ       Q++
Sbjct: 136 QQELARLTKQAQDLQTRLKTLAE--------------QRRQLEAQAQSLQ---ASQKQLQ 178

Query: 139 SENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 198
           +   Q + Q+ +   +    E+E   L    +  + + E    +     +  + +QQ   
Sbjct: 179 ASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDA 238

Query: 199 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIR 258
           +  ++ + +  + ++I + + ++    ++LE  Q   E+ + + E   + YV+   +A  
Sbjct: 239 QISQKAQQIAARAEQIRERERQL----QRLETAQARLEQEVAQLEAYYQAYVRLRQQAAA 294

Query: 259 L 259
            
Sbjct: 295 T 295

Length = 499

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 42.5 bits (101), Expect = 9e-04
 Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 42/187 (22%)

Query: 67  REEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKES 126
           R++  E + +  ++++ R+ E+    A  +K     E   +  + + E EK         
Sbjct: 25  RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEK--------- 75

Query: 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL 186
                      E    + ELQ  E  ++L   EE           L +++E    ++E L
Sbjct: 76  -----------ELRERRNELQKLE--KRLLQKEE----------NLDRKLELLEKREEEL 112

Query: 187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA----DEKKKL------EKLQHSAE 236
            K+ ++L+Q +++ EK+ E L+E  +E  +E E+I+    +E K++      E+ +H A 
Sbjct: 113 EKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAA 172

Query: 237 ERLKKEE 243
             +K+ E
Sbjct: 173 VLIKEIE 179

Length = 520

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 29/112 (25%), Positives = 60/112 (53%)

Query: 146 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE 205
                  QKL+  + E SEL +  S+L++++E    +   L  E EDL++D +   +  +
Sbjct: 65  PVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLK 124

Query: 206 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI 257
            L+E+ + + +  +++A E ++L +      E L++E   +++ +QR  EAI
Sbjct: 125 SLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAI 176

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 42.7 bits (100), Expect = 0.001
 Identities = 65/336 (19%), Positives = 133/336 (39%), Gaps = 58/336 (17%)

Query: 30  AKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE 89
             +QE +L  E+    I  ++ +  +  D    +I     K+ ++ + L +K   +K   
Sbjct: 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQ-EAMKISQKIKTLREKWRALKSDS 311

Query: 90  NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 149
           N     + ++K+     K++E   +LEK            LK EI+  E           
Sbjct: 312 NKYENYVNAMKQ-----KSQEWPGKLEK------------LKSEIELKE----------- 343

Query: 150 EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209
           EE + L+ N +E          L +Q+     +Q +  ++ E + Q+REK  +E + ++ 
Sbjct: 344 EEIKALQSNIDE----------LHKQLR----KQGISTEQFELMNQEREKLTRELDKINI 389

Query: 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269
           + D++ K    +   K + + +  S E+ L++ + ++   + R    I  +       + 
Sbjct: 390 QSDKLTKS---VKSRKLEAQGIFKSLEKTLRQYD-SLIQNITRSRSQIGHNVNDSSLKIN 445

Query: 270 HEQLV-----LSEKAK---NDRRKMLEEFEMQRMNQEAELLNRRDKME---KELQERTRT 318
            EQL      ++E  K    +    ++E      N+   L      ++    EL +    
Sbjct: 446 IEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEK 505

Query: 319 FEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKE 354
            E +     +     KE  E E+   + E ++LEKE
Sbjct: 506 LELELSEANSKFELSKEENERELVAQRIEIEKLEKE 541

Length = 622

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 81/370 (21%), Positives = 154/370 (41%), Gaps = 32/370 (8%)

Query: 32  QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 91
           ++   L    +    + ++    + L Q+E E    + +LER+   L +  +R  ++  +
Sbjct: 52  EESMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLE 111

Query: 92  LAARLKSVKEREKFV--KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 149
           L  RLK+++E EK    +A E + E +  K   D ESL++   + DQ++           
Sbjct: 112 LEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKN 171

Query: 150 EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209
           +  +     +   +EL  L+S+L    E  R Q E   KE  + ++  +    E     +
Sbjct: 172 DLSEMQCRAQNADTELKLLESEL----EELREQLEECQKELAEAEKKLQSLTSEQASSAD 227

Query: 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269
              +I   +E++   ++  E ++   E+ L+  E         E E   L +E  +    
Sbjct: 228 NSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPEL--------ERELAALREENRKLRSM 279

Query: 270 HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR------------ 317
            E   L ++   D +  LE FE  R  + A+L   ++K+E EL+                
Sbjct: 280 KEDNELLKEELEDLQSRLERFEKMR-EKLADLELEKEKLENELKSWKSLLQDIGLNLRTP 338

Query: 318 -TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
                +   + N+   LKE    +   I S   QLE    ++++ R+K   + L ++K +
Sbjct: 339 DDLSRRIVVLQNEELQLKE----KNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKL 394

Query: 377 DELDILCRRL 386
           + L  L RRL
Sbjct: 395 EALKALVRRL 404

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 34/216 (15%), Positives = 94/216 (43%), Gaps = 13/216 (6%)

Query: 14  QVEIQ-KLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE 72
           Q++   K +++QR              + K   + EE ++  + +++   E+ +    +E
Sbjct: 196 QIKTYNKNIEEQRKKNGENIAR----KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
               AL+K    +      + ++++  ++  K  + +        Q++    + +  +K 
Sbjct: 252 DPSAALNK----LNTAAAKIKSKIEQFQKVIKMYE-KGGVCPTCTQQISEGPDRITKIKD 306

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQL---KQQIETYRHQQELLLKE 189
           ++ +++    + +  I E  + +    E+  +LL L++++   KQ + T   + + +   
Sbjct: 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAA 366

Query: 190 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK 225
            E+LQ +     +E   L ++ D+I K + ++  EK
Sbjct: 367 IEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402

Length = 562

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 53/263 (20%), Positives = 120/263 (45%), Gaps = 30/263 (11%)

Query: 22  DDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKK 81
            ++   L+A+ ++ E E+EE  + +E         L + E  I   EE+ E  E+ + ++
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLER-----AEDLVEAEDRIERLEERREDLEELIAER 528

Query: 82  SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESEN 141
            + ++EK        +   E E   +AEEK+    + +  A++   ++ ++     E + 
Sbjct: 529 RETIEEKRERAEELRERAAELEA--EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586

Query: 142 AQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH----------- 190
             + L+          + E++ E LR + +   ++   R ++    +E            
Sbjct: 587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA 646

Query: 191 --EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE----KKKLEKLQHSAEERLKKEEC 244
             E+ ++D+E+ E+  E ++EK DE+ +E++ +  E    + +LE+L     E L++   
Sbjct: 647 RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL-----EELRERRE 701

Query: 245 AMRDYVQREIEAIRLDKEAFEAT 267
           A+ + V+  +EA+  + E  E+ 
Sbjct: 702 ALENRVEA-LEALYDEAEELESM 723

Length = 880

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 60/316 (18%), Positives = 142/316 (44%), Gaps = 24/316 (7%)

Query: 12  LLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKL 71
           +++ E  K L ++      +++E        ++ IEE  + +    +++  E    +E +
Sbjct: 46  MMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEII 105

Query: 72  ERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILK 131
           ER ++  + ++   +EK+  L   +    E     K EEK+ E E++  I + +      
Sbjct: 106 ERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQRE---- 161

Query: 132 VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 191
                      + E + + E ++ +  EE++ E+ RL++Q ++  +      EL    ++
Sbjct: 162 -----------KAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQ 210

Query: 192 DLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251
           +  + +E+         ++++E  K + +  + ++  E+     EERL++E        +
Sbjct: 211 EEYERKER--------QKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERE 262

Query: 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311
           R +E    D+E  E     ++ +   + + +  + +EE E +R  +  E L   +++ +E
Sbjct: 263 RMLEKQAEDEEL-EQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321

Query: 312 LQERTRTFEEKRERVL 327
             ER    EE+R+R+L
Sbjct: 322 EAERQARIEEERQRLL 337

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 37/244 (15%), Positives = 79/244 (32%), Gaps = 31/244 (12%)

Query: 192 DLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251
              +  ++ +KE   L++K  E   ++ K+  + K LE    S E +L +        ++
Sbjct: 35  ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA-DDLKKLR 93

Query: 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR-----D 306
           ++I  +     A E   R ++  L+E+    +R          ++ E    + R      
Sbjct: 94  KQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYG 153

Query: 307 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGE---------------------IQEIK 345
            +     ER    +      L  +A ++     E                     ++E K
Sbjct: 154 ALNPARAERIDALK----ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209

Query: 346 SERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVE 405
               QL  E    +   E+L+  +  ++ +I   +    +        +    R      
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEA 269

Query: 406 KHTS 409
           K T 
Sbjct: 270 KRTG 273

Length = 420

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 38/219 (17%), Positives = 85/219 (38%), Gaps = 19/219 (8%)

Query: 90  NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 149
           +D+  +L++++      + E++  E E++     +  LQ  + E + +  E A     + 
Sbjct: 77  DDIRPQLRALRTELGTAQGEKRAAETEREAA---RSELQKARQEREAVRQELAAARQNLA 133

Query: 150 EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209
           +  Q+L    ++      LQ++LK   E  R     L  + + LQ  +++ +     L  
Sbjct: 134 KAQQELARLTKQAQ---DLQTRLKTLAEQRRQ----LEAQAQSLQASQKQLQASATQLKS 186

Query: 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEA----FE 265
           +  ++     +I  E + L    ++A+ R ++         Q      + D +      +
Sbjct: 187 QVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQ 246

Query: 266 ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNR 304
              R EQ+      + +R+    E    R+ QE   L  
Sbjct: 247 IAARAEQI-----RERERQLQRLETAQARLEQEVAQLEA 280

Length = 499

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.7 bits (99), Expect = 0.002
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 110 EKKLELEKQKLIADKESLQI-LKVEIDQIESENAQQELQIQE-ECQKLKINEEEKSELLR 167
           E K +L +  LIA  E L+  L+ + ++ E+   + E   +E E +K K+ EEE   L  
Sbjct: 513 EDKEKLNE--LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570

Query: 168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 227
            + + +Q I+  + + + ++KE   LQ+      K  E L E R  +NK  EK   +KKK
Sbjct: 571 AEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHE-LIEARKRLNKANEKKEKKKKK 629

Query: 228 LEKLQHSAEE 237
            ++ Q   + 
Sbjct: 630 QKEKQEELKV 639

Length = 782

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 92  LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 151
           L      ++ R K ++   KK + E + L    E+L+I   E++ +E++ +Q E +IQE 
Sbjct: 15  LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEI---ELEDLENQVSQLESEIQEI 71

Query: 152 CQKLKINEEEKSEL--LRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209
            +++K  EE+ S +   R    L  +I+  + +   L  E  +L ++ EK EKE   +++
Sbjct: 72  RERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE---IED 128

Query: 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFE 265
            ++ + + ++ +A+ + +LE      EE  +  E       +RE    +LD E   
Sbjct: 129 LKERLERLEKNLAEAEARLE------EEVAEIREEGQELSSKREELKEKLDPELLS 178

Length = 239

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 0.003
 Identities = 67/310 (21%), Positives = 127/310 (40%), Gaps = 10/310 (3%)

Query: 65   SHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 124
                 K   ++   D K D   ++  + A       ++ +  KAEE +   E +K   D 
Sbjct: 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDA 1127

Query: 125  ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 184
               +  +   D  ++E A++    +      K  +  K+E  R +++  ++ E  R  +E
Sbjct: 1128 RKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR-KAEDAKKAEAARKAEE 1186

Query: 185  LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 244
            +   E     +D  K E   +  +E++     E+ + A++ KK E ++  AEE  K  E 
Sbjct: 1187 VRKAEELRKAEDARKAEAARKAEEERK----AEEARKAEDAKKAEAVK-KAEEAKKDAEE 1241

Query: 245  AMRDYVQREIEAIRLDKEAFEATMRHEQLVL--SEKAKNDRRKMLEEFEMQRMNQEAELL 302
            A +   +R  E IR  +EA  A     Q  +   E  K D  K  EE +     ++AE  
Sbjct: 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK 1301

Query: 303  NRRDKMEKELQERTRTFEEKR--ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV 360
             + D+ +K+ +E  +  E K+  E         K+ AE   +  ++ + + E    E + 
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361

Query: 361  NREKLQEQQL 370
              EK +  + 
Sbjct: 1362 AEEKAEAAEK 1371

Length = 2084

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 58/332 (17%), Positives = 133/332 (40%), Gaps = 34/332 (10%)

Query: 13  LQVEIQKL---LDDQRAILDAKQQEFEL-----ELEEKRKSIEEEMRSKISALDQQEFEI 64
           L+  +Q+    L    A    KQ E +L     ELEE++++  E   +   A    +   
Sbjct: 605 LRERLQQAEEALQSAVA--KQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ 662

Query: 65  SHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK---------KLEL 115
           + ++   ++ E A+ ++  + + +   L A+LK + E+++      K         +L  
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAK 722

Query: 116 EKQKLIADKESLQILKVEIDQIESENAQQELQIQE----ECQKLKINEEEKSELLRLQSQ 171
            +         L  L   I+   ++   +  ++++    E   L ++     EL R   +
Sbjct: 723 WQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEE 782

Query: 172 LKQQIETYRHQQELLLKEHEDLQQD---REKFEKEWEVLDEKRDEINKEQEKIADEKKKL 228
           L+  IE    ++  + +    +Q+    R+   +E   L  +  E+    E++  E  +L
Sbjct: 783 LETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRL 842

Query: 229 EKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLE 288
            K      ++L++E  A+   + +  E +R  ++            L E A  ++    E
Sbjct: 843 IKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAE-----LKEPANANQ---AE 894

Query: 289 EFEMQRMNQEAELLNRRDKMEKELQERTRTFE 320
               +R++Q  E   +R ++  +L++    F+
Sbjct: 895 GSISERLDQLEEFKRKRKRLSGDLKKFLERFD 926

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 43/288 (14%)

Query: 59  QQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ 118
             +F + H E+ LE  E+ L +                 S+      V    + ++  + 
Sbjct: 25  LHDFGLVHLED-LEEGEKGLKELEKL-----KVAEVAQISLSSLLSEVLDYLRSVKGLEG 78

Query: 119 KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKIN-EEEKSELLRLQSQLKQQIE 177
           +L    E ++ L+ E+  +E         + +  +K     EE   +L    S+L +++E
Sbjct: 79  RLFILPEEVEKLEAELKSLEE--------VIKPAEKFSSEVEELTRKLEERLSELDEELE 130

Query: 178 TYRHQQELLLKEHEDLQQDREKFEKEWEVLD---------EKRDEINKEQEKIADE---- 224
                    L+    L  D                     EK + +    E         
Sbjct: 131 DLE-DLLEELEPLAYLDFDLSLL--RGLKFLLVRLGLVRREKLEALVGVIEDEVALYGEN 187

Query: 225 -KKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDR 283
            +  +  +     E L K        +  E+    L +         E +   E+   + 
Sbjct: 188 VEASVVIVVAHGAEDLDKV-----SKILNELG-FELYEVPEFDGGPSELISELEEVIAEI 241

Query: 284 RKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIA 331
           +  LE       ++   L  +  +    ++E     E+    VL+ +A
Sbjct: 242 QDELESLR----SELEALAEKIAEELLAVREIL-EIEKALGDVLSKLA 284

Length = 660

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 53/286 (18%), Positives = 106/286 (37%), Gaps = 28/286 (9%)

Query: 54  ISALDQQEFEISHREEKLERREQALDKK---SDRVKEKENDLAARLKSVKEREKFV---K 107
           +  L Q+  EI   E++     + L+ +     R+ E  ++L A    ++     V    
Sbjct: 187 LEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWP 246

Query: 108 AEEKKLELEKQKLIADKESLQILKVEIDQIE---SENAQQELQIQEECQKLKINEEEKSE 164
             ++  +LE++     +E     +  + ++E   +   + E +I     +L   ++  S+
Sbjct: 247 RLQEWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQ 306

Query: 165 LL-----------RLQSQLKQQIETYRHQQELLLKEHEDLQQDREK----FEKEWEVLDE 209
           L+           RL  QL +   +     E L     DL+   E     FE E      
Sbjct: 307 LIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLR 366

Query: 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR---EIEAIRLDKEAFEA 266
             + + + Q    + K+         +E+   E+ A  +  QR   + E +R   EA E 
Sbjct: 367 SLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREE 426

Query: 267 TMRH-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311
            +    Q++  E+  N   +    ++ QR  +E +    R K E  
Sbjct: 427 KIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHT 472

Length = 984

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 46/183 (25%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 41  EKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVK 100
           EK+    EE+  +I    ++E E   +E  LE +E+    +++  +E           +K
Sbjct: 24  EKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERE-----------LK 72

Query: 101 EREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKL-KINE 159
           ER   ++  E++L   ++ L    ESL   +  +++ E E + +E  + E+ ++L ++  
Sbjct: 73  ERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIA 132

Query: 160 EEKSELLRLQSQLKQQIETYRHQQELLLKEHE-DLQQDREKFEKEWEVLDEKRDEINKEQ 218
           E++ EL R+ S L Q+       +E+LL+E E + + +  K  KE E  +E ++E +K+ 
Sbjct: 133 EQREELERI-SGLTQE-----EAKEILLEEVEEEARHEAAKLIKEIE--EEAKEEADKKA 184

Query: 219 EKI 221
           ++I
Sbjct: 185 KEI 187

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 40.6 bits (96), Expect = 0.004
 Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 191 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 250
             L++   + E++ E  +    E  K +E++ ++K+KL++ +    E  +KE        
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE-------A 575

Query: 251 QREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 310
           Q   +AI+  K+  +  ++  + +      + +   L E   +R+N+  E   ++ K +K
Sbjct: 576 Q---QAIKEAKKEADEIIKELRQLQKGGYASVKAHELIE-ARKRLNKANEKKEKKKKKQK 631

Query: 311 ELQERTRTFEEKRERVLNDIAH-LKEVAEGEIQE------IKSERDQLEKEKHEVKVNRE 363
           E QE  +  +E +   L      L    + E         +K     LEK +   K  ++
Sbjct: 632 EKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKK 691

Query: 364 KLQEQQLGMRKDIDELDI 381
           K +  +   R    ELD+
Sbjct: 692 KPKTVKPKPRTVSLELDL 709

Length = 782

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 59/307 (19%), Positives = 128/307 (41%), Gaps = 54/307 (17%)

Query: 47   EEEMRS----------KISALDQQEFEISHREEKLERREQALDKKSDRVK--------EK 88
            E E+R            ++  + QE +   + E+ +    AL++   R+         ++
Sbjct: 836  EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADR 895

Query: 89   ENDLAARLKSVKEREKFVKAEEKKLE-LEKQ--KLIADKESLQILKVEIDQIESENAQQE 145
              ++  +L   +E ++FV+     L  LE     L +D E  + LK +  Q +    Q++
Sbjct: 896  VEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQT--QRD 953

Query: 146  LQIQEECQKLKINEEEKSELLRLQSQLKQQIE--TYRHQQELLLKEHEDLQQDREKFEKE 203
             + Q                    +++ Q+    +Y    E+L K  +  ++ R++ E+ 
Sbjct: 954  AKQQ----------------AFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQA 997

Query: 204  WEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI--RLDK 261
             +     R+++ + Q ++A   + L  L+ S     K++   M   +++E++ +    D 
Sbjct: 998  EQERTRAREQLRQAQAQLAQYNQVLASLKSSY--DAKRQ---MLQELKQELQDLGVPADS 1052

Query: 262  EAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEE 321
             A E        + +  + N  R+   + E Q    EAE+    D + K+L++  R + E
Sbjct: 1053 GAEERARARRDELHARLSANRSRR--NQLEKQLTFCEAEM----DNLTKKLRKLERDYHE 1106

Query: 322  KRERVLN 328
             RE+V+N
Sbjct: 1107 MREQVVN 1113

Length = 1486

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	857
PRK02224	880	chromosome segregation protein; Provisional	98.99
PRK03918	880	chromosome segregation protein; Provisional	98.71
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.57
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.56
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.53
PRK02224	880	chromosome segregation protein; Provisional	98.49
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.48
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.47
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.47
PRK03918	880	chromosome segregation protein; Provisional	98.45
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.27
PRK01156	895	chromosome segregation protein; Provisional	98.17
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.14
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.01
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.91
PRK01156	895	chromosome segregation protein; Provisional	97.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.89
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.68
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.39
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.32
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.22
PRK12704	520	phosphodiesterase; Provisional	97.17
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.08
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.98
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	96.92
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.92
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.88
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.79
PRK11637	428	AmiB activator; Provisional	96.76
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.7
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.68
PRK00106	535	hypothetical protein; Provisional	96.65
PRK11637	428	AmiB activator; Provisional	96.5
PRK12704	520	phosphodiesterase; Provisional	96.45
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.37
PHA02562	562	46 endonuclease subunit; Provisional	96.36
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.34
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	96.34
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	96.27
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.2
PRK00106	535	hypothetical protein; Provisional	96.07
KOG0964	1200	consensus Structural maintenance of chromosome pro	95.8
PRK04863	1486	mukB cell division protein MukB; Provisional	95.8
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.77
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.74
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.73
KOG0964	1200	consensus Structural maintenance of chromosome pro	95.67
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	95.59
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.49
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.16
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.08
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.94
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.88
PRK12705	508	hypothetical protein; Provisional	94.77
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	94.3
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	94.06
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	93.49
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.21
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.7
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	92.35
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.26
PRK04778	569	septation ring formation regulator EzrA; Provision	92.22
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.29
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	90.88
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	90.69
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.66
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	90.65
PRK12705	508	hypothetical protein; Provisional	90.41
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.37
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	89.97
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.68
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	89.03
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	88.94
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	88.59
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.96
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.81
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	87.13
PRK09039	343	hypothetical protein; Validated	86.5
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.03
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	85.73
PRK04863	1486	mukB cell division protein MukB; Provisional	85.52
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	85.44
KOG0971	1243	consensus Microtubule-associated protein dynactin	85.36
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	85.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	84.78
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.62
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	83.31
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.06
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.68
KOG1103	561	consensus Predicted coiled-coil protein [Function	81.15
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.21
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.13

>PRK02224 chromosome segregation protein; Provisional

Probab=98.99  E-value=0.0003  Score=84.17  Aligned_cols=56  Identities=23%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 003017          175 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK  230 (857)
Q Consensus       175 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek  230 (857)
                      +++.++.+...|..+...|+.+...+..+++.+..+...++.++..+..+.+.+..
T Consensus       343 ~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~  398 (880)
T PRK02224        343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE  398 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555556666666666666666666666666666665555555555533

>PRK03918 chromosome segregation protein; Provisional

Probab=98.71  E-value=0.0022  Score=76.69  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017          174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK  210 (857)
Q Consensus       174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK  210 (857)
                      .+|..+..+...|..+...|+.+.......|..|.+.
T Consensus       391 ~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~  427 (880)
T PRK03918        391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKA  427 (880)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333343344444555555555555555555555544

>TIGR00606 rad50 rad50

Probab=98.58  E-value=0.0059  Score=77.17  Aligned_cols=86  Identities=12%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 003017          168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR  247 (857)
Q Consensus       168 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r  247 (857)
                      -..+|+.+|+.+..+...+-.+..+++.+.+-...+|+.+-..+.++......-..+-..--.-+...-+.|..--..++
T Consensus       882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  961 (1311)
T TIGR00606       882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE  961 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555554444444333322222111111222233444555555555


Q ss_pred             HHHHHH
Q 003017          248 DYVQRE  253 (857)
Q Consensus       248 ~~~kre  253 (857)
                      +|+...
T Consensus       962 ~y~~~~  967 (1311)
T TIGR00606       962 NKIQDG  967 (1311)
T ss_pred             HHHHcC
Confidence            555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.57  E-value=0.0057  Score=73.84  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=25.5

Q ss_pred             hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHHhhc
Q 003017          360 VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFK-REKERFLEFVEKHT  408 (857)
Q Consensus       360 ~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~-~ERe~fl~~vEklK  408 (857)
                      .....|..|..++...++.|...-.++.+.=.... .-++.|....++.+
T Consensus       993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168       993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666666666666555554433222 22444555444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.56  E-value=0.0049  Score=74.85  Aligned_cols=21  Identities=10%  Similarity=0.290  Sum_probs=8.4

Q ss_pred             HhHHHHHHhhhhhcHHHHHHH
Q 003017          362 REKLQEQQLGMRKDIDELDIL  382 (857)
Q Consensus       362 ke~le~q~~em~kdIdeL~~l  382 (857)
                      ...+..+...++..+..|..+
T Consensus       464 ~~~~~~~l~~~~~~l~~l~~~  484 (1164)
T TIGR02169       464 LSKYEQELYDLKEEYDRVEKE  484 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.53  E-value=0.0099  Score=74.70  Aligned_cols=206  Identities=16%  Similarity=0.273  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 003017          161 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK  240 (857)
Q Consensus       161 ER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK  240 (857)
                      ++.+|......|.++|..+..+...+.+..+.+..+.....+.-+.+...-+..+-+++.+......+-.-+.....++.
T Consensus       594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            45688989999999999999999999999999999988889988888888888888888887777777777777777888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          241 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE  320 (857)
Q Consensus       241 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FE  320 (857)
                      ..+..-+..+...+..|..+-..|    ..|+..|....+..+.....++--+..+++..+....+.+...+..+...|.
T Consensus       674 ~~~~~~~~~~~~~l~~l~~~l~~~----~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~  749 (1201)
T PF12128_consen  674 EAKEERKEQIEEQLNELEEELKQL----KQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK  749 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888887776655    4555677777777777777777777777777777777777777776666665


Q ss_pred             HHH-------HHHHhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHh
Q 003017          321 EKR-------ERVLND--IAH-LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL  370 (857)
Q Consensus       321 eek-------~~EL~~--In~-lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~  370 (857)
                      .++       ..+|..  |+- .-..++.+++.+..++.+++.-|..|..=+.=++..|.
T Consensus       750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~  809 (1201)
T PF12128_consen  750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD  809 (1201)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            543       334432  111 44556778888888888888888888775555555554

>PRK02224 chromosome segregation protein; Provisional

Probab=98.49  E-value=0.0083  Score=72.12  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017          340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT  408 (857)
Q Consensus       340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK  408 (857)
                      ++..+..+...+..++..+. +...+..+..++..+|++|..-...|+..|+.+..+...+-..|..+.
T Consensus       573 ~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~  640 (880)
T PRK02224        573 EVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE  640 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555 455556666677777777777778888888877777777777777764

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.48  E-value=0.017  Score=75.22  Aligned_cols=166  Identities=24%  Similarity=0.329  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------------HHH
Q 003017          243 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD-------------KME  309 (857)
Q Consensus       243 k~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~E-------------E~E  309 (857)
                      +.++-.++++.+..|..........++.||... .|+.+.|+|+.++++-.+.+|+.....-..             .|-
T Consensus      1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r-~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~ 1166 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASR-AKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLR 1166 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            445566777788888888888888888888764 578888889998888888888876322221             223


Q ss_pred             HHHHHHHHHHHHHHHH--------------HHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 003017          310 KELQERTRTFEEKRER--------------VLN-------DIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ  368 (857)
Q Consensus       310 ~~L~EREk~FEeek~~--------------EL~-------~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q  368 (857)
                      +.|.+-.-.|+.....              -+.       .+..-+.-+..+..++..+...+...+..+..-++.++.+
T Consensus      1167 ~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~ 1246 (1930)
T KOG0161|consen 1167 RDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQ 1246 (1930)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            3333333333332211              011       1122223334444455555555566666666666666667


Q ss_pred             HhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhcc
Q 003017          369 QLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTS  409 (857)
Q Consensus       369 ~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~  409 (857)
                      .++++-=++++..+...|-.|+-.+..+-..|..+++....
T Consensus      1247 l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~ 1287 (1930)
T KOG0161|consen 1247 LSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA 1287 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH
Confidence            77777777777776666666666666776666666665543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.47  E-value=0.011  Score=72.04  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 003017          326 VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD  389 (857)
Q Consensus       326 EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q  389 (857)
                      ++..+.........+++.+..++..+..+...+......+..+...++..+..|...-..|+..
T Consensus       435 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~  498 (1164)
T TIGR02169       435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ  498 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555555555555555555555555555554444443344433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=98.47  E-value=0.01  Score=75.12  Aligned_cols=70  Identities=16%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017          320 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF  393 (857)
Q Consensus       320 Eeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~  393 (857)
                      ...+..--.||++++  ..+++.++..+...|+.+-.++  ++..+..+..+|..-+..|......|-.+...+
T Consensus      1011 ~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~l 1080 (1311)
T TIGR00606      1011 KIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGY 1080 (1311)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455566665  5566666666666666555443  444555555555555555544443333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.45  E-value=0.01  Score=71.11  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=13.2

Q ss_pred             HHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017          364 KLQEQQLGMRKDIDELDILCRRLYGDREQF  393 (857)
Q Consensus       364 ~le~q~~em~kdIdeL~~ls~KLk~QRE~~  393 (857)
                      .+..+..++...|+.|...-..|+.+-+.+
T Consensus       670 ~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~  699 (880)
T PRK03918        670 ELSRELAGLRAELEELEKRREEIKKTLEKL  699 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.38  E-value=0.012  Score=68.68  Aligned_cols=69  Identities=29%  Similarity=0.416  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017          337 AEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT  408 (857)
Q Consensus       337 a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK  408 (857)
                      ++.-+++=..|+.+|+++-   ...++-..=|.+|-++.|.+|+.-=+-+++-.|+|..|+-.++..|++|.
T Consensus       383 ~e~~lqEer~E~qkL~~ql---~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le  451 (546)
T PF07888_consen  383 LEEHLQEERMERQKLEKQL---GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE  451 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444332   22233333478899999999999889999999999999999999999987

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.27  E-value=0.027  Score=68.15  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             HHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh-HHHHHHHHHHHHHHHHhhc
Q 003017          353 KEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD-REQFKREKERFLEFVEKHT  408 (857)
Q Consensus       353 kEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q-RE~~~~ERe~fl~~vEklK  408 (857)
                      ..-..+....+-|......+..-|.+|....+.+-+. .+.|..=.++|-..|..+-
T Consensus       993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf 1049 (1179)
T TIGR02168       993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVF 1049 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566666667777777777777777777766644 5778888888877776654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.17  E-value=0.043  Score=66.57  Aligned_cols=53  Identities=11%  Similarity=0.057  Sum_probs=30.7

Q ss_pred             HhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccc
Q 003017          358 VKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSC  410 (857)
Q Consensus       358 i~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~c  410 (857)
                      +......+..+...++.+|..|...-..|+++-+.+..+...+-.+++.++.+
T Consensus       679 ~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~  731 (895)
T PRK01156        679 IEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI  731 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555556666666666666666666665555555555555555555544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.14  E-value=0.066  Score=67.29  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 003017          325 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFV  404 (857)
Q Consensus       325 ~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~v  404 (857)
                      ..|..+|   -.|--+++++.-....|..+++.+...++.|..-+.+|.+-+         ...-.+.|.+=-.+|=.++
T Consensus       959 ~~lg~VN---~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~---------~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196         959 EALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK---------RERFKETFDKINENFSEIF 1026 (1163)
T ss_pred             HhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence            4455555   345556666766666666666666666666665555544322         2222344555555555555


Q ss_pred             Hhhc
Q 003017          405 EKHT  408 (857)
Q Consensus       405 EklK  408 (857)
                      -.+.
T Consensus      1027 ~~L~ 1030 (1163)
T COG1196        1027 KELF 1030 (1163)
T ss_pred             HHhC
Confidence            5554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.01  E-value=0.15  Score=66.96  Aligned_cols=206  Identities=25%  Similarity=0.292  Sum_probs=108.7

Q ss_pred             HHHHHhhhhHHHHHHHHHhhhHHHH-HHHHHHHHhhhh--hhhhhhHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHhh
Q 003017           25 RAILDAKQQEFELELEEKRKSIEEE-MRSKISALDQQE--FEISHREEKLERREQALDKKSDRVKE---KENDLAARLKS   98 (857)
Q Consensus        25 ~a~L~~Kk~eFElElE~kRKs~dee-l~~K~~~~e~rE--vei~h~Eekl~kREqaLe~k~~~lke---KEkdl~~K~k~   98 (857)
                      ...|-.++.+.|.+|......++++ .++...+...++  .++...++.+...|..+.+-......   +=+.|..-+..
T Consensus       896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~  975 (1930)
T KOG0161|consen  896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS  975 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777666665543 222222222222  45555555555555443333222222   22333444444


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH-------HhHHHHHHHHHHHHHh--------hhhccH
Q 003017           99 VKEREKFVKAEEKKLELEKQKLIADK----ESLQILKVEIDQI-------ESENAQQELQIQEECQ--------KLKINE  159 (857)
Q Consensus        99 LKEkEksLkaeEK~lE~ek~qL~~ek----eel~~lK~elEK~-------~a~~e~q~~qi~ee~e--------~Lkite  159 (857)
                      +.+.--.|..+.|.++....+|+.+-    +.+..++.-+.|+       ...++.+ .++..+.+        .|+++.
T Consensus       976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e-~~~r~e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen  976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE-KRIRMELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            55555666666666666555554432    2222222222222       2222222 22222333        234555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003017          160 EEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL  231 (857)
Q Consensus       160 eER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~  231 (857)
                      +.=.++-....+|..++.+...+..-|....+++......|.+.-..|--.-.+|..+++.--..|.++++-
T Consensus      1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ 1126 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666777777777777777778888888888888888877777666666666655555555555543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.039  Score=66.24  Aligned_cols=217  Identities=24%  Similarity=0.360  Sum_probs=128.0

Q ss_pred             HhhhhHHH---HHHHHHhhhHHHHHHHHHHHHhhhhhhh---hh--hHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhH
Q 003017           29 DAKQQEFE---LELEEKRKSIEEEMRSKISALDQQEFEI---SH--REEKLERREQALDKKSDRVKEKENDLA-ARLKSV   99 (857)
Q Consensus        29 ~~Kk~eFE---lElE~kRKs~deel~~K~~~~e~rEvei---~h--~Eekl~kREqaLe~k~~~lkeKEkdl~-~K~k~L   99 (857)
                      |.||-.|+   +|||.+|+-+++.-+..+..++++|.+=   +.  +-++=.|++-+|++++++--+.|..-+ .+-|.+
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei  395 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI  395 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566665   7889999999888777777777766542   22  334445566677777777766664432 233334


Q ss_pred             HHHHHhHHHHHHH--HHHH-------HHHHHhhHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 003017          100 KEREKFVKAEEKK--LELE-------KQKLIADKESLQILK---VEIDQIESENAQQELQIQEECQKLKINEEEKSELLR  167 (857)
Q Consensus       100 KEkEksLkaeEK~--lE~e-------k~qL~~ekeel~~lK---~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lr  167 (857)
                      ..+|-.-+-.||.  |+-+       .+|...+.+.|-.+|   ..|+--+..|..++++|..-.....+-         
T Consensus       396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~---------  466 (1118)
T KOG1029|consen  396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD---------  466 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------
Confidence            3333333322221  1111       122223333333332   233334444455555554443332221         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH-------------Hh
Q 003017          168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ-------------HS  234 (857)
Q Consensus       168 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~  234 (857)
                       -..-|++|+.++-|.+..+.|.+.|+++..              +++.-+.+++-||..|..-+             ++
T Consensus       467 -~tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s  531 (1118)
T KOG1029|consen  467 -ITTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS  531 (1118)
T ss_pred             -cchHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence             124589999999999999999999988754              34444555555555554332             56


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017          235 AEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR  269 (857)
Q Consensus       235 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~  269 (857)
                      +-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid  566 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID  566 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777778888888888888888888777666665

>PRK01156 chromosome segregation protein; Provisional

Probab=97.90  E-value=0.13  Score=62.44  Aligned_cols=58  Identities=21%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017          336 VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF  393 (857)
Q Consensus       336 ~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~  393 (857)
                      ....++..+..+..++..+...+..+...+..+...+..+|..|..--.++.++...+
T Consensus       671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l  728 (895)
T PRK01156        671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM  728 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3455667777777777777777777777777777777777666655444554444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.89  E-value=0.15  Score=64.63  Aligned_cols=145  Identities=17%  Similarity=0.312  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017          163 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEK----EWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER  238 (857)
Q Consensus       163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~----EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er  238 (857)
                      .++-.+..+|..+++.++.....+..+.+.+.+++..|+.    +|...-++..++..++..+..+...|+.-+.+=...
T Consensus       302 ~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~k  381 (1201)
T PF12128_consen  302 DEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESK  381 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455567778888888888888999999999999999985    688888888888888888888888888887777776


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003017          239 LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE  311 (857)
Q Consensus       239 LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~  311 (857)
                      ...-+..+...+.+..+.+.-.    .+....++.....++...-..+...+.-+...+...+...+..+...
T Consensus       382 y~~~~~~l~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  450 (1201)
T PF12128_consen  382 YNKLKQKLEEAFNRQQERLQAQ----QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSE  450 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667766666666655554    33334444444444444444555555444444444444444444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.85  E-value=0.2  Score=63.15  Aligned_cols=43  Identities=21%  Similarity=0.451  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHH--HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q 003017           15 VEIQKLLDDQRAI--LDAKQQEFELELEEKRKSIEEEMRSKISALD   58 (857)
Q Consensus        15 ~eIQKLldeh~a~--L~~Kk~eFElElE~kRKs~deel~~K~~~~e   58 (857)
                      .+...++.+.-=+  +..++.+-+..|+.....++. +...+.+++
T Consensus       155 ~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~-~~~~~~el~  199 (1163)
T COG1196         155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLER-LEDLLEELE  199 (1163)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4555566666543  345566666666666666554 555544443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.68  E-value=0.22  Score=58.59  Aligned_cols=189  Identities=18%  Similarity=0.254  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003017          163 SELLRLQSQLKQQIETYRHQQ-------ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSA  235 (857)
Q Consensus       163 ~E~lrLqseLKeEId~~R~Qk-------e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E  235 (857)
                      .++-.++.+||+.+..+-.+.       ..+..|.+.|+.+...-+.--..-..+-.-|.+|+-.+...|...-    .|
T Consensus       251 ~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~----ae  326 (546)
T PF07888_consen  251 AELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTM----AE  326 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence            344444555554444443333       3455666666665555554445555566666677766666664332    22


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003017          236 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER  315 (857)
Q Consensus       236 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ER  315 (857)
                      -.+-+.+-..+..+..           .-...|++.++-|    .+||..+.+..+..|+.++ .+..+...++..|++.
T Consensus       327 Lh~aRLe~aql~~qLa-----------d~~l~lke~~~q~----~qEk~~l~~~~e~~k~~ie-~L~~el~~~e~~lqEe  390 (546)
T PF07888_consen  327 LHQARLEAAQLKLQLA-----------DASLELKEGRSQW----AQEKQALQHSAEADKDEIE-KLSRELQMLEEHLQEE  390 (546)
T ss_pred             HHHhhhhHHHHHHHHH-----------HHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence            2233333333222211           1122344444333    4566677777777766655 3555666667777663


Q ss_pred             HHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 003017          316 TRTFEEKRERVLNDIAHLKE----VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL  379 (857)
Q Consensus       316 Ek~FEeek~~EL~~In~lkE----~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL  379 (857)
                      -++ .++-..+|+.-+-...    =++++|.+++.-++.+++||+++..       +.-+|..+|..|
T Consensus       391 r~E-~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~-------EkQeL~~yi~~L  450 (546)
T PF07888_consen  391 RME-RQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE-------EKQELLEYIERL  450 (546)
T ss_pred             HHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            222 2244445543222221    1356777777777777777655544       445566666655

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.51  Score=58.85  Aligned_cols=107  Identities=29%  Similarity=0.460  Sum_probs=76.1

Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH---HHHHHHHhH
Q 003017          162 KSELLRLQ---SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK---KLEKLQHSA  235 (857)
Q Consensus       162 R~E~lrLq---seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E  235 (857)
                      |-+|+..-   +.++..|........-..+.+..++.+-++|+++|..++-++++..+|.+.+...|-   ++..-+..|
T Consensus       288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~e  367 (1141)
T KOG0018|consen  288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEE  367 (1141)
T ss_pred             hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Confidence            55555332   223444455555556667778889999999999999999999999999999887654   566667778


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 003017          236 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE  271 (857)
Q Consensus       236 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE  271 (857)
                      .+|||.+-+..-   ..+|+.|.+...+=-++..|+
T Consensus       368 y~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~  400 (1141)
T KOG0018|consen  368 YERLKEEACKEA---LEELEVLNRNMRSDQDTLDHE  400 (1141)
T ss_pred             HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhH
Confidence            888887765544   677777776665555555443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.32  E-value=0.82  Score=56.35  Aligned_cols=64  Identities=30%  Similarity=0.410  Sum_probs=50.3

Q ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHH
Q 003017          153 QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINK  216 (857)
Q Consensus       153 e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~K  216 (857)
                      +.+........++..-...+...++.+.++...+.+...++......++..|..++.....+..
T Consensus       382 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  445 (908)
T COG0419         382 ERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLES  445 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566666666777778888889999999999999999999999999999888877654

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.22  E-value=0.66  Score=58.01  Aligned_cols=168  Identities=18%  Similarity=0.295  Sum_probs=115.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 003017           60 QEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES  139 (857)
Q Consensus        60 rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a  139 (857)
                      .+.+++..++.+.+.+..+..-.+++.       .+...+-.-...|..-|+++..-+..-..-.++|..++.++...+-
T Consensus       279 ~~~ql~~~~~~i~~~qek~~~l~~ki~-------~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r  351 (1074)
T KOG0250|consen  279 VERQLNNQEEEIKKKQEKVDTLQEKIE-------EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR  351 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344444445544444444333333333       3333333334444444444555555555667788888888888888


Q ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 003017          140 ENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI-ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ  218 (857)
Q Consensus       140 ~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEI-d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa  218 (857)
                      ...+-+.+|.+.+.++...+.+...+.+.=..++.+. ..+-.+..++..+.+.|+++.++||-.-..|-++..++..++
T Consensus       352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~  431 (1074)
T KOG0250|consen  352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA  431 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888877777777776 667777788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHh
Q 003017          219 EKIADEKKKLEKLQHS  234 (857)
Q Consensus       219 ~~I~eEre~lek~~~~  234 (857)
                      ..+-+++..++.-+..
T Consensus       432 ~~~~ee~~~i~~~i~~  447 (1074)
T KOG0250|consen  432 KEEEEEKEHIEGEILQ  447 (1074)
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            8888888777544433

>PRK12704 phosphodiesterase; Provisional

Probab=97.17  E-value=0.022  Score=66.25  Aligned_cols=77  Identities=21%  Similarity=0.383  Sum_probs=46.8

Q ss_pred             HHHhhhHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003017           40 EEKRKSIEEEMRSKISALDQQ----EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL  115 (857)
Q Consensus        40 E~kRKs~deel~~K~~~~e~r----Evei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~  115 (857)
                      ...+..++.++...+.++++.    +.+|..+|..|.+|+..|+.+.+.|..+++.|..+-+.|..+++.|...+++++.
T Consensus        56 ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~  135 (520)
T PRK12704         56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE  135 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555444    5666666777777777777777777777777777666666666665555544443


Q ss_pred             H
Q 003017          116 E  116 (857)
Q Consensus       116 e  116 (857)
                      .
T Consensus       136 ~  136 (520)
T PRK12704        136 L  136 (520)
T ss_pred             H
Confidence            3

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.08  E-value=0.55  Score=58.71  Aligned_cols=181  Identities=21%  Similarity=0.286  Sum_probs=144.3

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 003017           52 SKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE-------NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK  124 (857)
Q Consensus        52 ~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKE-------kdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ek  124 (857)
                      .+.+++...+-.|.+.++++.+-...++.+.-++.+..       .-+.......+....-+....+.+-.-+.....-+
T Consensus       278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~  357 (1074)
T KOG0250|consen  278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK  357 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888888888888877777777766655444       44444444445556666667777777777777778


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017          125 ESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE  203 (857)
Q Consensus       125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E  203 (857)
                      +++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|
T Consensus       358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee  437 (1074)
T KOG0250|consen  358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE  437 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            8888888889999999999999999998888 888888888888888999999999999999999999999999888888


Q ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003017          204 WEVLDEKRDEINKEQEKIADEKKKLEKLQ  232 (857)
Q Consensus       204 WE~LDEKR~el~KEa~~I~eEre~lek~~  232 (857)
                      -+.+..+...|.+-...+..+=..|.+.+
T Consensus       438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~~k  466 (1074)
T KOG0250|consen  438 KEHIEGEILQLRKKIENISEELKDLKKTK  466 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88898888889888888887666665544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=1.6  Score=53.37  Aligned_cols=252  Identities=25%  Similarity=0.344  Sum_probs=134.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Q 003017          122 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET----------YRHQQELLLKEHE  191 (857)
Q Consensus       122 ~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~----------~R~Qke~LlkEae  191 (857)
                      +-++.+.+=.++||+-|-.+++|.++-.++.++++--+.+|-+-.|++.+=|.+++-          -|...++--||.+
T Consensus       317 KrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie  396 (1118)
T KOG1029|consen  317 KRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIE  396 (1118)
T ss_pred             hhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888889999999999998888888888888888777777766665555442          2333334444444


Q ss_pred             HHHHHHHHHHH----HHhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----------HHH
Q 003017          192 DLQQDREKFEK----EWEVLDEKRDEI----NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV----------QRE  253 (857)
Q Consensus       192 ~Lk~eKekFE~----EWE~LDEKR~el----~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~----------kre  253 (857)
                      +...-|+-.|+    |||..  +|.++    .+|++.|.-++.+...++ -|.+-|.-....+...+          +.+
T Consensus       397 ~rEaar~ElEkqRqlewEra--r~qem~~Qk~reqe~iv~~nak~~ql~-~eletLn~k~qqls~kl~Dvr~~~tt~kt~  473 (1118)
T KOG1029|consen  397 RREAAREELEKQRQLEWERA--RRQEMLNQKNREQEWIVYLNAKKKQLQ-QELETLNFKLQQLSGKLQDVRVDITTQKTE  473 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence            44444444443    67754  33333    456666666665554433 44455554444443322          345


Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003017          254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHL  333 (857)
Q Consensus       254 lE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~l  333 (857)
                      ++.+.-.++--|+.|.    .+.-+|| |-..+|.-+-..|..|+..+.+.+-..    .++     .-+..+|+..-.-
T Consensus       474 ie~~~~q~e~~isei~----qlqarik-E~q~kl~~l~~Ekq~l~~qlkq~q~a~----~~~-----~~~~s~L~aa~~~  539 (1118)
T KOG1029|consen  474 IEEVTKQRELMISEID----QLQARIK-ELQEKLQKLAPEKQELNHQLKQKQSAH----KET-----TQRKSELEAARRK  539 (1118)
T ss_pred             HHHhhhHHHHHHHHHH----HHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhc----cCc-----chHHHHHHHHHHH
Confidence            5666555554444444    3444443 444555555566666666665433211    000     0112223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhH-hHHHH
Q 003017          334 KEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG-DREQF  393 (857)
Q Consensus       334 kE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~-QRE~~  393 (857)
                      |+++..-|.   -.+..|.+|..--..+-+-++.|..+++.|.-.+-...++|.+ -|..+
T Consensus       540 ke~irq~ik---dqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~  597 (1118)
T KOG1029|consen  540 KELIRQAIK---DQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKL  597 (1118)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333222   2233344444433333444556666777776666666655554 44433

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=96.92  E-value=0.05  Score=63.26  Aligned_cols=75  Identities=28%  Similarity=0.451  Sum_probs=46.2

Q ss_pred             HHHhhhHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017           40 EEKRKSIEEEMRSKISALDQQ----EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE  114 (857)
Q Consensus        40 E~kRKs~deel~~K~~~~e~r----Evei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE  114 (857)
                      ...+..+++++..++.++++.    +.+|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|...++++.
T Consensus        50 ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~  128 (514)
T TIGR03319        50 KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE  128 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555544    666666677777777777777777777777777766666666666555554443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.92  E-value=2  Score=53.68  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=50.1

Q ss_pred             HHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhHhHHHHHHhhhhhcHHHHHHHH
Q 003017          313 QERTRTFEEK--RERVLNDIAHLKEVAEGEIQEIKSE----RDQLEKEKHEVK---VNREKLQEQQLGMRKDIDELDILC  383 (857)
Q Consensus       313 ~EREk~FEee--k~~EL~~In~lkE~a~~E~E~v~lE----~~rLekEr~Ei~---~~ke~le~q~~em~kdIdeL~~ls  383 (857)
                      .-+.+.+...  ..-+++..+++-+-...+.++...-    ...|..-..++.   ..+..+.+|.-.+-...+.|++..
T Consensus       453 ~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~  532 (1195)
T KOG4643|consen  453 STVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKL  532 (1195)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443  4445666666655555544443332    222222222221   233444555555444444444444


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHHhhcc
Q 003017          384 RRLYGDREQFKREKERFLEFVEKHTS  409 (857)
Q Consensus       384 ~KLk~QRE~~~~ERe~fl~~vEklK~  409 (857)
                      .-|...=-.+-.++.++|.+|..|+.
T Consensus       533 eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  533 EELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44444444566788899999999986

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.88  E-value=0.85  Score=48.78  Aligned_cols=187  Identities=19%  Similarity=0.251  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH
Q 003017          123 DKESLQILKVEI----DQIESENAQQELQIQEECQKLKINE-EEKS-ELLRLQS---QLKQQIETYRHQQELLLKEHEDL  193 (857)
Q Consensus       123 ekeel~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eER~-E~lrLqs---eLKeEId~~R~Qke~LlkEae~L  193 (857)
                      +|++|+.|..-+    ++.+ +++.+-..+......+.... ...+ -...++.   .|...|+.+-.++--|.-+.+.|
T Consensus         2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l   80 (312)
T PF00038_consen    2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL   80 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence            455555555443    3333 24444444445555554442 2211 2222333   34477777777777777778888


Q ss_pred             HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHH-HHHHHHH
Q 003017          194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQHSAEERLKKEECAMRDYVQREIEAIRLDKE-AFEATMR  269 (857)
Q Consensus       194 k~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r~~~krelE~L~~ekE-sF~~~M~  269 (857)
                      +.+...|..-|+..-..+..++.+...+...-.....   .+.+.-..|+.+..-++..|..++..|...-. .+-..|.
T Consensus        81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~  160 (312)
T PF00038_consen   81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVD  160 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeec
Confidence            8888888888888877777777776666544443332   24566788899999999999999999987663 2222222


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017          270 H-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK  310 (857)
Q Consensus       270 h-Ers~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~  310 (857)
                      . -...+..-+..=|+++=..+...+.+++...+.+.+++..
T Consensus       161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~  202 (312)
T PF00038_consen  161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ  202 (312)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc
Confidence            1 1233444444444444444444444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.79  E-value=3.5  Score=54.55  Aligned_cols=224  Identities=23%  Similarity=0.280  Sum_probs=165.1

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 003017            6 NFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEK----------RKSIEEEMRSKISALDQQEFEISHREEKLERRE   75 (857)
Q Consensus         6 ~~~i~~rE~~eIQKLldeh~a~L~~Kk~eFElElE~k----------RKs~deel~~K~~~~e~rEvei~h~Eekl~kRE   75 (857)
                      +|-.|-.|+.++.+++.++-..|..-+...-.+++..          =+.+.+.|....+.++.-+.--.....-|.+-+
T Consensus       644 ~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~  723 (1822)
T KOG4674|consen  644 ELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE  723 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888888888888887776665555544422          233444444555444433333334445555555


Q ss_pred             H---HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-----------
Q 003017           76 Q---ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESEN-----------  141 (857)
Q Consensus        76 q---aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~-----------  141 (857)
                      +   .+-..+-...+|=.-|++-+..||.--+.|+..++.|-.+...|.+++.+++.+-..++-+...+           
T Consensus       724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~  803 (1822)
T KOG4674|consen  724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKC  803 (1822)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   55556667788888899999999999999999999999999999999999988777776554433           


Q ss_pred             HHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 003017          142 AQQELQIQEECQKLK-INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK  220 (857)
Q Consensus       142 e~q~~qi~ee~e~Lk-iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~  220 (857)
                      +.+...+..+...|+ -++++.+++-.|+..|...+..|+.+...+..+.+.+.++--.-......|--|-.+|.+.++.
T Consensus       804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~  883 (1822)
T KOG4674|consen  804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS  883 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344443433332 3678899999999999999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHH
Q 003017          221 IADEKKKLE  229 (857)
Q Consensus       221 I~eEre~le  229 (857)
                      .--+...+-
T Consensus       884 ~~~~~~~l~  892 (1822)
T KOG4674|consen  884 AKTQLLNLD  892 (1822)
T ss_pred             hHHHHhhcc
Confidence            666555443

>PRK11637 AmiB activator; Provisional

Probab=96.76  E-value=1.2  Score=50.25  Aligned_cols=30  Identities=10%  Similarity=0.351  Sum_probs=10.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003017           64 ISHREEKLERREQALDKKSDRVKEKENDLA   93 (857)
Q Consensus        64 i~h~Eekl~kREqaLe~k~~~lkeKEkdl~   93 (857)
                      |...+.+|...+..|+.....+...+.++.
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~  106 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQID  106 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.70  E-value=0.57  Score=51.42  Aligned_cols=167  Identities=20%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017           77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK  156 (857)
Q Consensus        77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk  156 (857)
                      .+=+...++.-|..=++=+++-+..--..|...-..|......|.+..+.|..+...+....+.+..+...+......  
T Consensus       125 ~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--  202 (325)
T PF08317_consen  125 QLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--  202 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            344555566666666777777776666666655555555555566555666666666665555555555555544333  


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017          157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE  236 (857)
Q Consensus       157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~  236 (857)
                      +..-+..++.    .||++|.....+-+.+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-
T Consensus       203 ~~~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev  278 (325)
T PF08317_consen  203 IESCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEV  278 (325)
T ss_pred             hhhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            2333444444    456777777777888888899999999999999999999999999999999999998889999999


Q ss_pred             HHhHHHHHHHHHH
Q 003017          237 ERLKKEECAMRDY  249 (857)
Q Consensus       237 erLK~Ek~~~r~~  249 (857)
                      .+||.+-+.++..
T Consensus       279 ~~Lk~~~~~Le~~  291 (325)
T PF08317_consen  279 KRLKAKVDALEKL  291 (325)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887754

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.68  E-value=2.7  Score=51.74  Aligned_cols=142  Identities=18%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             HHhhhhhhhhhhHHHHHHHHHHHHHh----hhHH---------HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH----
Q 003017           56 ALDQQEFEISHREEKLERREQALDKK----SDRV---------KEKENDLAARLKSVKEREKFVKAEEKKLELEKQ----  118 (857)
Q Consensus        56 ~~e~rEvei~h~Eekl~kREqaLe~k----~~~l---------keKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~----  118 (857)
                      .+.-.|..+.|.+..+..++.+...-    ..++         .-.++.|+.|=...+.-|+.|...+-.|..-+.    
T Consensus       184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~  263 (775)
T PF10174_consen  184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL  263 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45567788899999999988887322    1111         123444455555555555555544433333222    


Q ss_pred             ----------HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          119 ----------KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLK  188 (857)
Q Consensus       119 ----------qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~Llk  188 (857)
                                +|...+-...-||..|+.+...+......|..-+-+|..+.+.=++|-.==..||..+-...++...|..
T Consensus       264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs  343 (775)
T PF10174_consen  264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS  343 (775)
T ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      3333344445566666666666666666666666666666666555544445567777777777788888


Q ss_pred             HHhHHHHHH
Q 003017          189 EHEDLQQDR  197 (857)
Q Consensus       189 Eae~Lk~eK  197 (857)
                      ++|.|+..-
T Consensus       344 dve~Lr~rl  352 (775)
T PF10174_consen  344 DVEALRFRL  352 (775)
T ss_pred             hHHHHHHHH
Confidence            888777653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK00106 hypothetical protein; Provisional

Probab=96.65  E-value=0.076  Score=62.24  Aligned_cols=73  Identities=26%  Similarity=0.440  Sum_probs=36.9

Q ss_pred             HhhhHHHHHHHHHHHHhhh---hh-hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017           42 KRKSIEEEMRSKISALDQQ---EF-EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE  114 (857)
Q Consensus        42 kRKs~deel~~K~~~~e~r---Ev-ei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE  114 (857)
                      .+..+++++..++.++++.   +. +|..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|...+++++
T Consensus        73 ~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~  149 (535)
T PRK00106         73 LLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVE  149 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555543   33 4555555555555555555555555555555555555555444444443333

>PRK11637 AmiB activator; Provisional

Probab=96.50  E-value=2.1  Score=48.40  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003017          273 LVLSEKAKNDRRKMLEEFEMQRMNQEA  299 (857)
Q Consensus       273 s~~~ek~q~Erad~l~d~EmqkreLE~  299 (857)
                      ..++..+..-+.+++..|.-.+..|+.
T Consensus       158 ~~~l~~i~~~d~~~l~~l~~~~~~L~~  184 (428)
T PRK11637        158 LAYFGYLNQARQETIAELKQTREELAA  184 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566667778888888777776663

>PRK12704 phosphodiesterase; Provisional

Probab=96.45  E-value=0.18  Score=58.87  Aligned_cols=22  Identities=5%  Similarity=0.058  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 003017          166 LRLQSQLKQQIETYRHQQELLL  187 (857)
Q Consensus       166 lrLqseLKeEId~~R~Qke~Ll  187 (857)
                      ..+..+++.++..+-.+.+.-.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~  182 (520)
T PRK12704        161 EKVEEEARHEAAVLIKEIEEEA  182 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777788777544444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.37  E-value=4.1  Score=50.24  Aligned_cols=230  Identities=21%  Similarity=0.311  Sum_probs=150.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 003017           78 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI  157 (857)
Q Consensus        78 Le~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki  157 (857)
                      ++.-.=.|..+.-.|.+...-|.-...........|+.-+..|-+--....+|..|++-++..++....++......+..
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~  368 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK  368 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445566666666667777777777777788888888888888899999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH------------HHHHHHHHHH
Q 003017          158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN------------KEQEKIADEK  225 (857)
Q Consensus       158 teeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~------------KEa~~I~eEr  225 (857)
                      +++|.+-|..==.+|+..+|.+=....-|.+.+|.|...-..   .=-.|++-++.|.            -.++.-.-++
T Consensus       369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e---kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ek  445 (775)
T PF10174_consen  369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE---KDRQLDEEKERLSSQADSSNEDEALETLEEALREK  445 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            999877665444556666666666666666665555433221   1112222233333            3333444444


Q ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHH
Q 003017          226 KKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN---QEAELL  302 (857)
Q Consensus       226 e~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emqkre---LE~~~~  302 (857)
                      +.+..-+...+++.-.++..=-+.|++++..|...-++|...+ ||+..-+.-++.+-+.|.-+.+-++.+   |++.++
T Consensus       446 er~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE  524 (775)
T PF10174_consen  446 ERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE  524 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence            4444444444444444444444677777777777777777665 577777777777777776666555554   446666


Q ss_pred             HHHHHHHHH
Q 003017          303 NRRDKMEKE  311 (857)
Q Consensus       303 ~r~EE~E~~  311 (857)
                      +.++++++-
T Consensus       525 k~rek~~kl  533 (775)
T PF10174_consen  525 KKREKHEKL  533 (775)
T ss_pred             HhhhHHHHH
Confidence            666666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.36  E-value=2.8  Score=48.16  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHH
Q 003017          133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD  212 (857)
Q Consensus       133 elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~  212 (857)
                      .|...++.++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+.++.+..=..+.++-.
T Consensus       303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            34446666777777777777777777777777777777788888888888888888888888888888777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 003017          213 EINKEQEKIADEKKKLEKLQ  232 (857)
Q Consensus       213 el~KEa~~I~eEre~lek~~  232 (857)
                      +|..++..+..++..+.+-.
T Consensus       383 ~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        383 KLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777765544

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=1.3  Score=55.50  Aligned_cols=213  Identities=20%  Similarity=0.219  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Q 003017          173 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY---  249 (857)
Q Consensus       173 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~---  249 (857)
                      ..+++.++.+++-|+.+..+|.. +.+   |-....-|..-|+..+.+..-+-+.+.+-+    +.+.+|...+.+.   
T Consensus       651 ek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~  722 (1141)
T KOG0018|consen  651 EKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDE  722 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            46788888888888888888887 555   667777777777777777777766666433    2333444444333   


Q ss_pred             -------HHHHHHHHhhcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003017          250 -------VQREIEAIRLDKEAFEATMRHEQLVLSE----------------KAKNDRRKMLEEFEMQRMNQEAELLNRRD  306 (857)
Q Consensus       250 -------~krelE~L~~ekEsF~~~M~hErs~~~e----------------k~q~Erad~l~d~EmqkreLE~~~~~r~E  306 (857)
                             +++.++.......+..-+|..=-+.+|.                ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus       723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~  802 (1141)
T KOG0018|consen  723 FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ  802 (1141)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec
Confidence                   4555666555666666666522222221                12888888899999999999988864433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 003017          307 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL  386 (857)
Q Consensus       307 E~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL  386 (857)
                      .--..=-+|...+=+.-+.++..+.--.+.+.+++-.+ .+|..  ++    ..-=++.+.+|.+.++...-|+..-.||
T Consensus       803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl  875 (1141)
T KOG0018|consen  803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKL  875 (1141)
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111223444455555666666666666666666666 44443  22    2223445566666666666666666666


Q ss_pred             hHhHHHHHHHHHHH
Q 003017          387 YGDREQFKREKERF  400 (857)
Q Consensus       387 k~QRE~~~~ERe~f  400 (857)
                      ..++-.+-..++++
T Consensus       876 ~~~i~~~es~ie~~  889 (1141)
T KOG0018|consen  876 DKEITSIESKIERK  889 (1141)
T ss_pred             hhhhhhhhhHHHHH
Confidence            55544444444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=96.34  E-value=0.23  Score=57.97  Aligned_cols=79  Identities=28%  Similarity=0.449  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 003017           32 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEE  110 (857)
Q Consensus        32 k~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeE  110 (857)
                      +.+++-|+..+|..++.+++.+...+.++|..|.++|+.|.+|+..|+.+...|..+++.|+.+.+.|.++.+.+....
T Consensus        53 ~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~  131 (514)
T TIGR03319        53 LLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI  131 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555566666665555555666666666666666666666666666666666666666666655555554433

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=96.27  E-value=0.76  Score=47.35  Aligned_cols=70  Identities=30%  Similarity=0.560  Sum_probs=43.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 003017           38 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK  107 (857)
Q Consensus        38 ElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLk  107 (857)
                      ++...|..++.++..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus        61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555778888888888887777766666666666555555555555555555555555555554444443

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.20  E-value=6  Score=50.45  Aligned_cols=135  Identities=18%  Similarity=0.247  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 003017          129 ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD  208 (857)
Q Consensus       129 ~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD  208 (857)
                      .+..++.++..++.....++.+....+.+.++|=.-|+..+..+..-.+.+-.+..-+++..++.+..--....+...+-
T Consensus       476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k  555 (1293)
T KOG0996|consen  476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK  555 (1293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            45567777777788888888888888888888888888888877777777777777777777777777777777777777


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH--HHHHHHhhcHHH
Q 003017          209 EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ--REIEAIRLDKEA  263 (857)
Q Consensus       209 EKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relE~L~~ekEs  263 (857)
                      -+..++.|++.....+=..+...++.=+.++-.-+..|...-.  +=|.+|.+.+++
T Consensus       556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes  612 (1293)
T KOG0996|consen  556 QELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES  612 (1293)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence            7777777777777666666666655545544444443332221  235666666654

>PRK00106 hypothetical protein; Provisional

Probab=96.07  E-value=0.39  Score=56.55  Aligned_cols=100  Identities=18%  Similarity=0.325  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH
Q 003017           85 VKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE  164 (857)
Q Consensus        85 lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E  164 (857)
                      |..+|+.|..|...|..++..|...++.|+.....|..-++++...+.+++.+......++.+|.      -.|.+|=-+
T Consensus        99 L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a------~lt~~eak~  172 (535)
T PRK00106         99 LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA------ALSQAEARE  172 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHH
Confidence            44444444444444444444444444444444444444444455555555544444444444432      123333222


Q ss_pred             --HHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003017          165 --LLRLQSQLKQQIETYRHQ-QELLLKEH  190 (857)
Q Consensus       165 --~lrLqseLKeEId~~R~Q-ke~LlkEa  190 (857)
                        +-.+..+++.++..+-.+ ..+...+|
T Consensus       173 ~l~~~~~~~~~~~~~~~i~~~e~~a~~~a  201 (535)
T PRK00106        173 IILAETENKLTHEIATRIREAEREVKDRS  201 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              234566677777655433 33443333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.80  E-value=8.1  Score=48.63  Aligned_cols=254  Identities=24%  Similarity=0.369  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHH---HHHhhhhHHH--HHHHHHhhhHH-----HHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHh
Q 003017           15 VEIQKLLDDQRA---ILDAKQQEFE--LELEEKRKSIE-----EEMRSKISALDQQEFEISH---REEKLERREQALDKK   81 (857)
Q Consensus        15 ~eIQKLldeh~a---~L~~Kk~eFE--lElE~kRKs~d-----eel~~K~~~~e~rEvei~h---~Eekl~kREqaLe~k   81 (857)
                      .-|+.||..-+-   .|+.-|-|++  -+|+..|++++     .|+..=+..+++-|.+...   .-+++.-.-+...-.
T Consensus       187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~  266 (1200)
T KOG0964|consen  187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE  266 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence            346666654322   2333344433  25778888875     3444334444444444332   222222222233334


Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH-------HHH-----------HhhHHHHHHHHHHHHHHHhHHHH
Q 003017           82 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK-------QKL-----------IADKESLQILKVEIDQIESENAQ  143 (857)
Q Consensus        82 ~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek-------~qL-----------~~ekeel~~lK~elEK~~a~~e~  143 (857)
                      ++.|+..=+.|+.++..|.+--..+++.+-++-..|       ..|           ..+-+.++.++..|+....++..
T Consensus       267 ~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~  346 (1200)
T KOG0964|consen  267 SEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSK  346 (1200)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666677777777775555555543333222       222           23445555555555554444332


Q ss_pred             ----------HHHHHHHHHhhhhc----------------cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017          144 ----------QELQIQEECQKLKI----------------NEEEKSELLRLQS-QLKQQIETYRHQQELLLKEHEDLQQD  196 (857)
Q Consensus       144 ----------q~~qi~ee~e~Lki----------------teeER~E~lrLqs-eLKeEId~~R~Qke~LlkEae~Lk~e  196 (857)
                                +..+...-.-.|+-                +++||+.++|-+- +|+.=|...--|..-|.+|.++|+.+
T Consensus       347 I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~  426 (1200)
T KOG0964|consen  347 IEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE  426 (1200)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence                      22111111111211                4577777776553 45666666666666666666666554


Q ss_pred             HHHHHHHHh----hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017          197 REKFEKEWE----VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR  269 (857)
Q Consensus       197 KekFE~EWE----~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~  269 (857)
                      ...--.+..    .|++-+.++..=...++..+..+..++ ..+.-|=.|+..++.-+-.=.+.|+....-.++.|-
T Consensus       427 l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~-~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  427 LKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ-DKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            433222221    122222222222223444444444433 334444445555555555555556666666666665

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.80  E-value=11  Score=49.86  Aligned_cols=19  Identities=11%  Similarity=0.351  Sum_probs=8.6

Q ss_pred             HHHHHHHHhhcHHHHHHHH
Q 003017          250 VQREIEAIRLDKEAFEATM  268 (857)
Q Consensus       250 ~krelE~L~~ekEsF~~~M  268 (857)
                      .++++..+....+.|...+
T Consensus       461 lE~kL~~lea~leql~~~~  479 (1486)
T PRK04863        461 LEQKLSVAQAAHSQFEQAY  479 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.77  E-value=9.1  Score=48.94  Aligned_cols=224  Identities=18%  Similarity=0.276  Sum_probs=124.8

Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH  233 (857)
Q Consensus       154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~  233 (857)
                      +..-.+.++.++-+--.+.++....|-.....|+|+.+..+..+..|++.-|-.+..-...+.|...+.+..+..++-+.
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677777777788888888888888888888888888888888888888888888888888777777766666665


Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017          234 SAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK---MLEEFEMQRMNQEAELLNRRDKMEK  310 (857)
Q Consensus       234 ~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad---~l~d~EmqkreLE~~~~~r~EE~E~  310 (857)
                      ...+.|+++=..+++.+           +.....|.    -|..++..-|+.   .--+|++-. ...+...++.++...
T Consensus       465 e~~~~l~~~t~~~~~e~-----------~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk~  528 (1293)
T KOG0996|consen  465 EILDSLKQETEGIREEI-----------EKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELKG  528 (1293)
T ss_pred             HHHHHHhhhhhhhHHHH-----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            55555555555444444           33333333    233333333322   222233222 233455566666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 003017          311 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR  390 (857)
Q Consensus       311 ~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QR  390 (857)
                      .|..-.....+.+.    .|+.++..    +..++.|+....++-......-..+          --.|..+++++.+-+
T Consensus       529 ~L~~~~~~~~e~~~----~l~~~k~~----l~~~k~e~~~~~k~l~~~~~e~~~~----------~~~~~~~rqrveE~k  590 (1293)
T KOG0996|consen  529 KLLASSESLKEKKT----ELDDLKEE----LPSLKQELKEKEKELPKLRKEERNL----------KSQLNKLRQRVEEAK  590 (1293)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHh----hhhHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence            66554444444332    23444433    3333444433333322222111111          123444455555555


Q ss_pred             HHHHH--HHHHHHHHHHhhcccc
Q 003017          391 EQFKR--EKERFLEFVEKHTSCK  411 (857)
Q Consensus       391 E~~~~--ERe~fl~~vEklK~ck  411 (857)
                      ..+.+  -|...|.++-++|--.
T Consensus       591 s~~~~~~s~~kVl~al~r~kesG  613 (1293)
T KOG0996|consen  591 SSLSSSRSRNKVLDALMRLKESG  613 (1293)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHcC
Confidence            44333  3455677777666433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.74  E-value=0.0026  Score=77.42  Aligned_cols=301  Identities=23%  Similarity=0.370  Sum_probs=0.0

Q ss_pred             HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q 003017           26 AILDAKQQEFELELEEKRKSIEEEMRSKISA---LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKER  102 (857)
Q Consensus        26 a~L~~Kk~eFElElE~kRKs~deel~~K~~~---~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEk  102 (857)
                      ..|..+.+..+.+++..|..++++-.+|...   +..-..+|..|-.++   +.....+.+.|.+--+.|..++..+.+.
T Consensus       260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL~~~L~el~e~  336 (859)
T PF01576_consen  260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKLERKLQELQEQ  336 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777777777776665542   223333333333322   3333444555555566667777777776


Q ss_pred             HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 003017          103 EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES---ENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETY  179 (857)
Q Consensus       103 EksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a---~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~  179 (857)
                      -..+++.--.|+.-+..|..+-+.+.   .+|++..+   .++....+++.....++      ..    ...+..+.|.+
T Consensus       337 le~~~~~~~~LeK~k~rL~~EleDl~---~eLe~~~~~~~~LeKKqr~fDk~l~e~k------~~----~~~~~~e~d~~  403 (859)
T PF01576_consen  337 LEEANAKVSSLEKTKKRLQGELEDLT---SELEKAQAAAAELEKKQRKFDKQLAEWK------AK----VEELQAERDAA  403 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHH------HH----HHHHHHHHHHH
Confidence            66667767777777777776655544   34444443   44454455554332222      11    23455666666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Q 003017          180 RHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRL  259 (857)
Q Consensus       180 R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~  259 (857)
                      -.....+..++-.|+.+.......|+.|.-....|+.|+..+..+.-...+-++ +-++.+.       .+..+++.|..
T Consensus       404 q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr-------~LE~e~~El~~  475 (859)
T PF01576_consen  404 QREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKR-------RLEQEKEELQE  475 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHH-------HHHHHHHHHHH
Confidence            666677777777777777777777777777677777777766655433333221 1111111       11111111111


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017          260 DKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEG  339 (857)
Q Consensus       260 ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~  339 (857)
                      +=+.-.                   +-+...|..+.-|+..|..-+-++++.|.+|+..|+..|..=...|-+|..-+..
T Consensus       476 ~leE~E-------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~  536 (859)
T PF01576_consen  476 QLEEAE-------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE  536 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH
Confidence            111111                   1222455567778888999999999999999999999876544444444333322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH
Q 003017          340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD  380 (857)
Q Consensus       340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~  380 (857)
                      |           -+.|.++.-.|++|+.+..+|.--++..+
T Consensus       537 E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n  566 (859)
T PF01576_consen  537 E-----------RKERAEALREKKKLESDLNELEIQLDHAN  566 (859)
T ss_dssp             -----------------------------------------
T ss_pred             H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2           23344555555566555555544444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.73  E-value=6.5  Score=46.99  Aligned_cols=47  Identities=17%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 003017          340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL  386 (857)
Q Consensus       340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL  386 (857)
                      .+.++..++..++++..++..+...+.++...+++.|+.|...-.++
T Consensus       422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  468 (650)
T TIGR03185       422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK  468 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.67  E-value=9.1  Score=48.23  Aligned_cols=180  Identities=18%  Similarity=0.273  Sum_probs=120.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003017          158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE  237 (857)
Q Consensus       158 teeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e  237 (857)
                      ...=|.+|.-||    +.++.||...+.+-.+++.|..+-++-|..|...--....|..|+..|..|+-.+..-+.-=..
T Consensus       673 ~~~~~~~~~~l~----~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~  748 (1200)
T KOG0964|consen  673 VNESRSELKELQ----ESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK  748 (1200)
T ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence            344556665555    4557799999999999999999999999999999999999999999999999888776543222


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH-------------------HHHH---HHHHHHHHHHHHHHHHhhh
Q 003017          238 RLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ-------------------LVLS---EKAKNDRRKMLEEFEMQRM  295 (857)
Q Consensus       238 rLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hEr-------------------s~~~---ek~q~Erad~l~d~Emqkr  295 (857)
                      .|        ..++-.+..+......|.+-|-.|=                   ..+.   -.+..+|.++.+=+-..--
T Consensus       749 ~L--------e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~  820 (1200)
T KOG0964|consen  749 EL--------EEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEA  820 (1200)
T ss_pred             HH--------HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22        1233334444555555555544322                   1111   2245566665555555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003017          296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLE  352 (857)
Q Consensus       296 eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLe  352 (857)
                      +|...+..|..+.+.   +=...|.-.+..+|+.-++-.+-++..++...+++.-|+
T Consensus       821 ~l~~kL~~r~~~l~~---ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~  874 (1200)
T KOG0964|consen  821 NLNTKLYKRVNELEQ---EIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQ  874 (1200)
T ss_pred             HHHHHHHhhhhHHHH---HhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            555666666666633   334566677778888888888888888888888887443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.59  E-value=0.72  Score=49.09  Aligned_cols=110  Identities=17%  Similarity=0.282  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 003017          310 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD  389 (857)
Q Consensus       310 ~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q  389 (857)
                      ..|+.+...|+.-+..-++.+.+++... +=|++..-|+..|..||       ...-+++-.|+.||..|.+.=+.++..
T Consensus         4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e   75 (230)
T PF10146_consen    4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE   75 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999999999999888887655 55555555555555554       455678888999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhcCCCCCcccc
Q 003017          390 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR  433 (857)
Q Consensus       390 RE~~~~ERe~fl~~vEklK~ckncg~~~~efvlsdLql~d~e~~  433 (857)
                      |......=.+++..+-.||      .-++++..+-|.|......
T Consensus        76 r~~~~~~i~r~~eey~~Lk------~~in~~R~e~lgl~~Lp~l  113 (230)
T PF10146_consen   76 RNKRQEKIQRLYEEYKPLK------DEINELRKEYLGLEPLPSL  113 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCCCCcc
Confidence            8776554444444444433      6666663332654444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.49  E-value=7.7  Score=46.23  Aligned_cols=319  Identities=18%  Similarity=0.263  Sum_probs=148.4

Q ss_pred             hhhhHHHHHHHHHHHHH------HHhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 003017           11 GLLQVEIQKLLDDQRAI------LDAKQQEFELELEEKRK-----------SIEEEMRSKISALDQQEFEISHREEKLER   73 (857)
Q Consensus        11 ~rE~~eIQKLldeh~a~------L~~Kk~eFElElE~kRK-----------s~deel~~K~~~~e~rEvei~h~Eekl~k   73 (857)
                      -+|+.+||.|.|---..      |++.-+-++.+|...|-           -|+.||-.=+..|+.--.+....|-.+.+
T Consensus        38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k  117 (546)
T KOG0977|consen   38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK  117 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999998743322      22222223333333222           23344444444444444444444455555


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003017           74 REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ  153 (857)
Q Consensus        74 REqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e  153 (857)
                      -...++.-..++.++++.+..==..++.+...|...+-++..-+...-.=.+++.-||.+...+...|..=+.+++.|.-
T Consensus       118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl  197 (546)
T KOG0977|consen  118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL  197 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            55555555556666666665555556666666665555555555555555556666777777777777666666665431


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003017          154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW--EVLDEKRDEINKEQEKIADEKKKLEKL  231 (857)
Q Consensus       154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW--E~LDEKR~el~KEa~~I~eEre~lek~  231 (857)
                             -|.++.---..|+++|+-+..+=..      ++++++.+|..+-  +.=++=+.+|..=+..|-.+=++    
T Consensus       198 -------lr~d~~n~~q~Lleel~f~~~~h~~------eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~----  260 (546)
T KOG0977|consen  198 -------LRVDLQNRVQTLLEELAFLKRIHKQ------EIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA----  260 (546)
T ss_pred             -------HHHHHHhHHHHHHHHHHHHHhccHH------HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH----
Confidence                   1233333333455566555433211      2333344444443  22222233333333333222222    


Q ss_pred             HHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003017          232 QHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM--RHE-QLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKM  308 (857)
Q Consensus       232 ~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M--~hE-rs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~  308 (857)
                            ..+.=+.+++.-|++.+..++..=+.+-..-  .+| ...+-..|-.=|+++ .|+|-.-    ..+.++.+.+
T Consensus       261 ------~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-selE~~n----~~L~~~I~dL  329 (546)
T KOG0977|consen  261 ------ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-SELESRN----SALEKRIEDL  329 (546)
T ss_pred             ------HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-ccccccC----hhHHHHHHHH
Confidence                  2223334444444444444442111111111  111 011111111111111 1333332    3456677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 003017          309 EKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ  368 (857)
Q Consensus       309 E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q  368 (857)
                      +..|.+=-+.|+..-..--           .+|..|.-|+..|-.|.+.+--.+.-|+-+
T Consensus       330 ~~ql~e~~r~~e~~L~~kd-----------~~i~~mReec~~l~~Elq~LlD~ki~Ld~E  378 (546)
T KOG0977|consen  330 EYQLDEDQRSFEQALNDKD-----------AEIAKMREECQQLSVELQKLLDTKISLDAE  378 (546)
T ss_pred             HhhhhhhhhhhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence            8888888888876533222           334445555555555555444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.16  E-value=4.8  Score=41.92  Aligned_cols=143  Identities=20%  Similarity=0.366  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 003017          162 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK  241 (857)
Q Consensus       162 R~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~  241 (857)
                      +..-+-|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....    .+|+ 
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k----~rl~-   96 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK----ARLK-   96 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence            45677888999999999999999999999999999999999999999999999998887766665554432    1121 


Q ss_pred             HHHHHHHHHHHHHHHHhhcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 003017          242 EECAMRDYVQREIEAIRLDKEAFEA---TMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ-EAELLNRRDKMEKELQERTR  317 (857)
Q Consensus       242 Ek~~~r~~~krelE~L~~ekEsF~~---~M~hErs~~~ek~q~Erad~l~d~EmqkreL-E~~~~~r~EE~E~~L~EREk  317 (857)
                             ....++..|..+.+.+..   +++.||.+|..+-..    +++|+. ||..| .+-++++...+...|.-|+.
T Consensus        97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   335566666666665543   444555555544442    222222 23333 23445566666666666665


Q ss_pred             HHHH
Q 003017          318 TFEE  321 (857)
Q Consensus       318 ~FEe  321 (857)
                      .+.+
T Consensus       165 qL~e  168 (201)
T PF13851_consen  165 QLNE  168 (201)
T ss_pred             HHHH
Confidence            5543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.08  E-value=9.5  Score=44.86  Aligned_cols=163  Identities=22%  Similarity=0.283  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH
Q 003017           83 DRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK  162 (857)
Q Consensus        83 ~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER  162 (857)
                      .+...++.+|..=-..|.+-.+.|...+..=-.-...|..-|--+..|+..|++..++-..-..  ..+..++.+.+-+.
T Consensus        27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~--~~e~~k~r~~e~e~  104 (522)
T PF05701_consen   27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEE--DSELAKFRAKELEQ  104 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHhHHHHHHHhh
Confidence            3444444444443344444444444443222222222333344455566666665544322111  22233333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-HHhHHHHHH--HHHHHHHHHHHHHHHHHhHHHHh
Q 003017          163 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL-DEKRDEINK--EQEKIADEKKKLEKLQHSAEERL  239 (857)
Q Consensus       163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L-DEKR~el~K--Ea~~I~eEre~lek~~~~E~erL  239 (857)
                      .-...-...+|.+++..|.|-...+.+.+--+++..+...|...+ |+|-.-+..  ++.++++.-..--.-+..|-.+|
T Consensus       105 ~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~l  184 (522)
T PF05701_consen  105 GIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIAL  184 (522)
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222334999999999999999999999999999999999875 777666654  44555555555445556777777


Q ss_pred             HHHHHHHH
Q 003017          240 KKEECAMR  247 (857)
Q Consensus       240 K~Ek~~~r  247 (857)
                      |...+-..
T Consensus       185 ke~l~~~~  192 (522)
T PF05701_consen  185 KESLESAK  192 (522)
T ss_pred             HHHHHHHH
Confidence            76665543

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.94  E-value=17  Score=46.94  Aligned_cols=124  Identities=23%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          107 KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL  186 (857)
Q Consensus       107 kaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~L  186 (857)
                      .+..|+|+.....+..+-+...++..-..-.-..+..++.......+.|...++.-..+..+..+|..+.+.+|.|.-.+
T Consensus       542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~  621 (1317)
T KOG0612|consen  542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEI  621 (1317)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444333333333333333333333333334444444555667888888888889999999999999999999888


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH-HHHHHHHhHHH
Q 003017          187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK-KLEKLQHSAEE  237 (857)
Q Consensus       187 lkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre-~lek~~~~E~e  237 (857)
                      ..+.-+|+.+-       ..|.+.-..++++...+-+.|. +.+.+-.+|.+
T Consensus       622 ~e~~~~l~~~i-------~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~  666 (1317)
T KOG0612|consen  622 SEIIAELKEEI-------SSLEETLKAGKKELLKVEELKRENQERISDSEKE  666 (1317)
T ss_pred             HHHHHHHHhHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777654       4455555556666655555443 34444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.88  E-value=12  Score=44.89  Aligned_cols=45  Identities=22%  Similarity=0.211  Sum_probs=20.3

Q ss_pred             HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017          151 ECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ  195 (857)
Q Consensus       151 e~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~  195 (857)
                      ...++...+.+..++..-...|+++|..+..+...+.+..++|++
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444455554444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK12705 hypothetical protein; Provisional

Probab=94.77  E-value=2  Score=50.58  Aligned_cols=60  Identities=30%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh
Q 003017           39 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKF  105 (857)
Q Consensus        39 lE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEks  105 (857)
                      +...|..++.+++.++.++..+       |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus        61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~  120 (508)
T PRK12705         61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE  120 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555444       44566666666666666666655555555544444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=94.30  E-value=11  Score=41.97  Aligned_cols=53  Identities=21%  Similarity=0.471  Sum_probs=36.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 003017           76 QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ  128 (857)
Q Consensus        76 qaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~  128 (857)
                      ..|..++..+.++-.+|-.|.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus        30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein   82 (294)
T COG1340          30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN   82 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677777777777777777777777777777776666666666666554

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=94.06  E-value=7.4  Score=45.65  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhccccchhhhhHHHHhhcCCCCCccccCCCCChHHHHhh
Q 003017          397 KERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERC  445 (857)
Q Consensus       397 Re~fl~~vEklK~ckncg~~~~efvlsdLql~d~e~~~~~~~~~~ad~~  445 (857)
                      +.-|...+..|+.|.....++.- +|+-|. +.....-++|...|.++|
T Consensus       429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~-~~a~~~Gv~s~~~L~~rf  475 (582)
T PF09731_consen  429 PRPFEDELRALKELAPDDELVDA-ALSSLP-PEAAQRGVPSEAQLRNRF  475 (582)
T ss_pred             CCCHHHHHHHHHHhCCCChHHHH-HHHhcC-HHHhhCCCCCHHHHHHHH
Confidence            46788888899988666666655 466665 333344577777788887

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=93.49  E-value=39  Score=45.54  Aligned_cols=173  Identities=28%  Similarity=0.339  Sum_probs=113.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHhhhH---------HHHHHHHHHHHh-hhhh------hhhhhHHHHHHHHHHHHHhhhHHHH
Q 003017           24 QRAILDAKQQEFELELEEKRKSI---------EEEMRSKISALD-QQEF------EISHREEKLERREQALDKKSDRVKE   87 (857)
Q Consensus        24 h~a~L~~Kk~eFElElE~kRKs~---------deel~~K~~~~e-~rEv------ei~h~Eekl~kREqaLe~k~~~lke   87 (857)
                      +-+.|.....++...|...|.++         +.+|-.++..|. .+|-      +..+-.+++    +.|-.+..+|+-
T Consensus      1182 q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~ 1257 (1822)
T KOG4674|consen 1182 QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKI----QELRDKIEKLNF 1257 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence            44566777778888888888887         556666666665 2232      334444444    445555555444


Q ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH-------H-----HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003017           88 KENDLAARLKSVKEREKFVKAEEKKLELEKQK-------L-----IADKESLQILKVEIDQIESENAQQELQIQEECQKL  155 (857)
Q Consensus        88 KEkdl~~K~k~LKEkEksLkaeEK~lE~ek~q-------L-----~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~L  155 (857)
                      .=.-|..-++.|+..=....++=+.|+.+...       |     ..++..+.+|+.+|..+...++.....|.+-.   
T Consensus      1258 el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~--- 1334 (1822)
T KOG4674|consen 1258 ELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELK--- 1334 (1822)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            44444444444444444444444444443322       2     23577888888888888888886666665443   


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017          156 KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK  210 (857)
Q Consensus       156 kiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK  210 (857)
                             .++.+||-++|+..|.+-..+..|.++..+|+.-+-+.+.-|.-+-++
T Consensus      1335 -------~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1335 -------KELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   345667788999999999999999999999999999999999877666

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.21  E-value=17  Score=40.54  Aligned_cols=167  Identities=19%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017           77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK  156 (857)
Q Consensus        77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk  156 (857)
                      .|-+...++..|..=++=|++-|+.-...|...-.-|......|.++-+-+..+...|....+.+..+..++.+....+.
T Consensus       120 ~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~  199 (312)
T smart00787      120 QLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE  199 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45556667777777777777776666555555554444444555555555555555555544444444444433333322


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017          157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE  236 (857)
Q Consensus       157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~  236 (857)
                      .-  +-.++..|..+|++.    =.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-
T Consensus       200 ~~--d~~eL~~lk~~l~~~----~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei  273 (312)
T smart00787      200 DC--DPTELDRAKEKLKKL----LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEI  273 (312)
T ss_pred             hC--CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            21  145666655555544    445555667788899999999999999999999999999888888888888888999


Q ss_pred             HHhHHHHHHHHHH
Q 003017          237 ERLKKEECAMRDY  249 (857)
Q Consensus       237 erLK~Ek~~~r~~  249 (857)
                      .+||..-..++..
T Consensus       274 ~~Lk~~~~~Le~l  286 (312)
T smart00787      274 EKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988887654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.70  E-value=38  Score=43.26  Aligned_cols=69  Identities=26%  Similarity=0.372  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHhHH--HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017          126 SLQILKVEIDQIESEN--AQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE  203 (857)
Q Consensus       126 el~~lK~elEK~~a~~--e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E  203 (857)
                      +.++|+..|++.++-.  ..=..+|.+=+++|--|..              +-+..|+|-++|+.|---|.-+++..-.-
T Consensus       279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~--------------erdtdr~kteeL~eEnstLq~q~eqL~~~  344 (1195)
T KOG4643|consen  279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRS--------------ERDTDRHKTEELHEENSTLQVQKEQLDGQ  344 (1195)
T ss_pred             HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3456667777766544  1122333333444444433              34566677777777777777777777777


Q ss_pred             HhhhH
Q 003017          204 WEVLD  208 (857)
Q Consensus       204 WE~LD  208 (857)
                      |++|-
T Consensus       345 ~ellq  349 (1195)
T KOG4643|consen  345 MELLQ  349 (1195)
T ss_pred             hhHhh
Confidence            77654

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=92.35  E-value=22  Score=39.84  Aligned_cols=159  Identities=18%  Similarity=0.281  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 003017          172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ  251 (857)
Q Consensus       172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k  251 (857)
                      ||-|++.+|..-.-|..|...|++.=-++-.--|.                 |=|-|...+..=-+.|+++|..+--.|.
T Consensus        39 Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq-----------------EEE~isN~LlKkl~~l~keKe~L~~~~e  101 (310)
T PF09755_consen   39 LKRELETEKARCKHLQEENRALREASVRIQAKAEQ-----------------EEEFISNTLLKKLQQLKKEKETLALKYE  101 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666543332211111                 1112222222223445555555554454


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 003017          252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER---TRTFEEKRERVLN  328 (857)
Q Consensus       252 relE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ER---Ek~FEeek~~EL~  328 (857)
                      ++-|.|.-.=-.=.+.+.+|+..+...+..|..-++.-+.-+=..|+.++...+.++++-.+++   |.+.|.+-+    
T Consensus       102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE----  177 (310)
T PF09755_consen  102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE----  177 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH----
Confidence            4444443222222334444444444444444444444444444445555555555555444433   233333322    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          329 DIAHLKEVAEGEIQEIKSERDQLEKE  354 (857)
Q Consensus       329 ~In~lkE~a~~E~E~v~lE~~rLekE  354 (857)
                         +|...+-+-|.++..|...|+..
T Consensus       178 ---~lvN~L~Kqm~~l~~eKr~Lq~~  200 (310)
T PF09755_consen  178 ---ALVNRLWKQMDKLEAEKRRLQEK  200 (310)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence               23344556666666666666554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.26  E-value=0.04  Score=65.88  Aligned_cols=70  Identities=20%  Similarity=0.327  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017          339 GEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT  408 (857)
Q Consensus       339 ~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK  408 (857)
                      -++-.+..+...++.....+...+..+..+...++.-+..+..+...|..|+-++.+||+.+-.++..+-
T Consensus       357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd  426 (722)
T PF05557_consen  357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD  426 (722)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455677888888888888888888999999999999999999999999999999999999998888775

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.22  E-value=30  Score=41.06  Aligned_cols=253  Identities=20%  Similarity=0.259  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          110 EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE  189 (857)
Q Consensus       110 EK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkE  189 (857)
                      +++|..-+.+|..-...|..+  +|+...+.+..=..+|+.=-+.|+--..-+...-.....|..-|+.++.+-..|..|
T Consensus       255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E  332 (569)
T PRK04778        255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE  332 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444  555666666666666776667777667777888888999999999999999999999


Q ss_pred             HhHHHHH----------HHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Q 003017          190 HEDLQQD----------REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRL  259 (857)
Q Consensus       190 ae~Lk~e----------KekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~  259 (857)
                      .+.|++.          ...|+++-+.|...-..+....   +.....++...            ..-..+..+++.+.-
T Consensus       333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i---~~~~~~ysel~------------e~leel~e~leeie~  397 (569)
T PRK04778        333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERI---AEQEIAYSELQ------------EELEEILKQLEEIEK  397 (569)
T ss_pred             HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHH------------HHHHHHHHHHHHHHH
Confidence            9999877          4444444444443333332221   11111111111            111122222333333


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017          260 DKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEG  339 (857)
Q Consensus       260 ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~  339 (857)
                      ++.+|-..+.           .=|            .-|..+.++...+...|.      +-++.-+..++..+=+-.-.
T Consensus       398 eq~ei~e~l~-----------~Lr------------k~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~  448 (569)
T PRK04778        398 EQEKLSEMLQ-----------GLR------------KDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLE  448 (569)
T ss_pred             HHHHHHHHHH-----------HHH------------HHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHH
Confidence            3222222222           111            112222233333333222      22222233334333333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH---HHHHHHHHHHHHHhhc
Q 003017          340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ---FKREKERFLEFVEKHT  408 (857)
Q Consensus       340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~---~~~ERe~fl~~vEklK  408 (857)
                      -+..+.-+..+|.++......|=...+.+..+...+++.|..+..-|-+...+   ++..+++|..++....
T Consensus       449 ~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~  520 (569)
T PRK04778        449 MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVA  520 (569)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence            44445555555555555566666677777777777777777777777766643   4566777766555544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.29  E-value=24  Score=37.96  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhh
Q 003017          301 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK  374 (857)
Q Consensus       301 ~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~k  374 (857)
                      +..+...+|+.+.+-+..|.    .++...+........++.++..++.+.-.|-+++---|=.|+-+.+--|+
T Consensus       235 l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  235 LRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34445555555555555444    44555555566667888888889988888888888888888887776655

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=90.88  E-value=63  Score=42.11  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhh-------
Q 003017          263 AFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKEL------QERTRTFEEKRERVLND-------  329 (857)
Q Consensus       263 sF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L------~EREk~FEeek~~EL~~-------  329 (857)
                      ...+.++.+..+|+...|++.+---+- +||-.      ..+.-+|++.|      ++.-...-.+...++..       
T Consensus       667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~-~L~~~------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~  739 (1317)
T KOG0612|consen  667 ALEIKLERKLKMLQNELEQENAEHHRL-RLQDK------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQ  739 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            566778888888888888887755433 33322      22333344333      22333333444455443       


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 003017          330 ----IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL  365 (857)
Q Consensus       330 ----In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~l  365 (857)
                          +|.|+-.....+..+.-=-.+|+.|-.--++...-|
T Consensus       740 ~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eL  779 (1317)
T KOG0612|consen  740 SQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQREL  779 (1317)
T ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence                344444444444444444445555544444433333

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=90.69  E-value=14  Score=43.62  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH---
Q 003017           87 EKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS---  163 (857)
Q Consensus        87 eKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~---  163 (857)
                      +++++++.+-.-+..+|..-....+..+..+.++....+.+...+.++++-...+..++..+.++++..+-......   
T Consensus       189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~  268 (489)
T PF05262_consen  189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQ  268 (489)
T ss_pred             ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhh
Confidence            44455555555555666666666666666677777767777777766666666666666666555555443222111   


Q ss_pred             --HHHHHHHHHHHHHHH
Q 003017          164 --ELLRLQSQLKQQIET  178 (857)
Q Consensus       164 --E~lrLqseLKeEId~  178 (857)
                        +=-+++.+.|+|+++
T Consensus       269 ~~edek~aE~~kkE~EK  285 (489)
T PF05262_consen  269 KKEDEKLAEEEKKEAEK  285 (489)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence              223345556666655

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.66  E-value=61  Score=41.56  Aligned_cols=316  Identities=19%  Similarity=0.282  Sum_probs=161.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017           77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK  156 (857)
Q Consensus        77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk  156 (857)
                      .|+-.+.++.....+|+.|.-.|.=-++.+...+      .-+++.+   +..++.+++.+...|.+...-+..-.    
T Consensus       702 ~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e------~~~~~~~---~~~~~e~v~e~~~~Ike~~~~~k~~~----  768 (1174)
T KOG0933|consen  702 SLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE------FHKLLDD---LKELLEEVEESEQQIKEKERALKKCE----  768 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3445566666666677666554433333322211      2222222   22333444444444443333333222    


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017          157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE  236 (857)
Q Consensus       157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~  236 (857)
                            .++..|+..+|.==-.--.....|-||..-+++.-+.|.++|+-=.-=...|+=|.+.+..+....+..+..-+
T Consensus       769 ------~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~  842 (1174)
T KOG0933|consen  769 ------DKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLE  842 (1174)
T ss_pred             ------HHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  34555666655433333345567888888888888888888864322222233333333333332222222111


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003017          237 ERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT  316 (857)
Q Consensus       237 erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ERE  316 (857)
                      ..+        .-++.++..|...    ..+.++++......+.-.++ +++++.-+-..+..++       |..+++.-
T Consensus       843 ~~~--------~~l~~e~~~l~~k----v~~~~~~~~~~~~el~~~k~-k~~~~dt~i~~~~~~~-------e~~~~e~~  902 (1174)
T KOG0933|consen  843 KQI--------SSLKSELGNLEAK----VDKVEKDVKKAQAELKDQKA-KQRDIDTEISGLLTSQ-------EKCLSEKS  902 (1174)
T ss_pred             HHH--------HHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHHHH-HHHhhhHHHhhhhhHH-------HHHHHHhh
Confidence            111        0111222222111    12334445444444444333 3334443333333333       33333322


Q ss_pred             H--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHhHHHHHHhhhhhcHH
Q 003017          317 R--TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK-----------------VNREKLQEQQLGMRKDID  377 (857)
Q Consensus       317 k--~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~-----------------~~ke~le~q~~em~kdId  377 (857)
                      .  .=-.+.+.++..+.+=+..+.++++.+.-+--.|..|++=..                 ..-++|+..+..|++.+.
T Consensus       903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn  982 (1174)
T KOG0933|consen  903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVN  982 (1174)
T ss_pred             cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcC
Confidence            1  112345677777888888888999999888888887775432                 233456666666666542


Q ss_pred             H--HHH------HHHHhhHhHHHHHHHHHHHHHHHHhhc-------------cccchhhhhHHHHhhcCCCCCccccCCC
Q 003017          378 E--LDI------LCRRLYGDREQFKREKERFLEFVEKHT-------------SCKNCGEMMRAFVISNLQLPDDEARNDI  436 (857)
Q Consensus       378 e--L~~------ls~KLk~QRE~~~~ERe~fl~~vEklK-------------~ckncg~~~~efvlsdLql~d~e~~~~~  436 (857)
                      -  ..+      --..|+..|+-+..|+..|..-|+++-             +-++-|.|.+.+      ||+....=.|
T Consensus       983 ~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~L------LPga~AkL~P 1056 (1174)
T KOG0933|consen  983 PKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTL------LPGAMAKLEP 1056 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh------CCCccccccC
Confidence            1  122      234688888889999988888887763             446777777776      5776654344


Q ss_pred             C
Q 003017          437 P  437 (857)
Q Consensus       437 ~  437 (857)
                      |
T Consensus      1057 p 1057 (1174)
T KOG0933|consen 1057 P 1057 (1174)
T ss_pred             C
Confidence            4

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=90.65  E-value=52  Score=40.78  Aligned_cols=291  Identities=23%  Similarity=0.325  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHHH
Q 003017           16 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS----ALDQQEFEISHREEKLERREQALDKKSDRV-KEKEN   90 (857)
Q Consensus        16 eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~----~~e~rEvei~h~Eekl~kREqaLe~k~~~l-keKEk   90 (857)
                      --|+|-..+.-.++---+-||.|+-++.+-+|-||++=.+    .+|.-|.+-.|+          |---.+++ -|.|+
T Consensus       809 ~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~r----------lR~eakRir~EQek  878 (1187)
T KOG0579|consen  809 QQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHR----------LRNEAKRIRIEQEK  878 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhHH
Confidence            3456666666667777788999999999999999886433    222223222222          21111122 13334


Q ss_pred             HHHH---HHhhHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhH--------HHHHHH
Q 003017           91 DLAA---RLKSVKEREK-------------FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESE--------NAQQEL  146 (857)
Q Consensus        91 dl~~---K~k~LKEkEk-------------sLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~--------~e~q~~  146 (857)
                      |+..   +||.-|...+             +|+.--.+++-+++.  ++|+=+.+.+.+++-++--        +..-.+
T Consensus       879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql--~ekdFv~kqqq~le~~lkrm~~~~k~ema~iEr  956 (1187)
T KOG0579|consen  879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQL--KEKDFVMKQQQNLEAMLKRMAEKHKEEMASIER  956 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4332   2222222222             344433444444443  4455555555555544332        222222


Q ss_pred             HHHHHH-hhhhccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHhHHHHH
Q 003017          147 QIQEEC-QKLKINEEEKS---------ELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE-WEVLDEKRDEIN  215 (857)
Q Consensus       147 qi~ee~-e~LkiteeER~---------E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E-WE~LDEKR~el~  215 (857)
                      +..--+ +=|.+-+.--=         -|.-+.-+||   |.|=+|.-.|++-.+.=..|-+++--+ -|.|  ||..-+
T Consensus       957 ecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlK---DqYflqRhqlL~rHekE~eQmqrynQr~ie~L--k~rqtq 1031 (1187)
T KOG0579|consen  957 ECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLK---DQYFLQRHQLLARHEKEMEQMQRYNQREIEDL--KRRQTQ 1031 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            222122 22222222111         1222333444   445555555777666666666665432 2222  222211


Q ss_pred             ----------HHHH----------HH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017          216 ----------KEQE----------KI------ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR  269 (857)
Q Consensus       216 ----------KEa~----------~I------~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~  269 (857)
                                -|++          +|      ++.|+++..|-.-|+.|-|.+..+-.-.+.+++-.|....++=+-.. 
T Consensus      1032 erarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL- 1110 (1187)
T KOG0579|consen 1032 ERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIEL- 1110 (1187)
T ss_pred             HHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                      1111          22      57899999999999999999999988888888888888777655443 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003017          270 HEQLVLSEKAKNDRRKMLEEFEMQRM-NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIA  331 (857)
Q Consensus       270 hErs~~~ek~q~Erad~l~d~Emqkr-eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In  331 (857)
                             -.+|+|.-.+|..-|-|+. +|+..-..-++.---.|.-|...+|++-+-+|..|-
T Consensus      1111 -------~qlQNEKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~lee~~~~~~reqE 1166 (1187)
T KOG0579|consen 1111 -------DQLQNEKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVLEEKFEDELREQE 1166 (1187)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence                   3689999999999998874 666666666777778888899888888777766553

>PRK12705 hypothetical protein; Provisional

Probab=90.41  E-value=19  Score=42.64  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Q 003017           84 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL  120 (857)
Q Consensus        84 ~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL  120 (857)
                      ++..+|..|+.|...|..++..|...++.|......|
T Consensus        85 rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~  121 (508)
T PRK12705         85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL  121 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.37  E-value=33  Score=38.00  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=18.1

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017          122 ADKESLQILKVEIDQIESENAQQELQIQEECQKLK  156 (857)
Q Consensus       122 ~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk  156 (857)
                      -|+++|..++.+|....+.++..+..+.+-+..|.
T Consensus       206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~  240 (325)
T PF08317_consen  206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELE  240 (325)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555555555555554444444433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=89.97  E-value=32  Score=37.32  Aligned_cols=90  Identities=24%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             HHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 003017          187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEA  266 (857)
Q Consensus       187 lkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~  266 (857)
                      .-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++.    +...+..+++....
T Consensus        95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~  170 (239)
T COG1579          95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE  170 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            33344444444444555555566666666666666666666666666666777666665543    45667788888888


Q ss_pred             HHHHHHHHHHHHHH
Q 003017          267 TMRHEQLVLSEKAK  280 (857)
Q Consensus       267 ~M~hErs~~~ek~q  280 (857)
                      +|.-+=...++++-
T Consensus       171 ~l~~ell~~yeri~  184 (239)
T COG1579         171 KLDPELLSEYERIR  184 (239)
T ss_pred             hcCHHHHHHHHHHH
Confidence            98877666666654

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.68  E-value=38  Score=37.69  Aligned_cols=66  Identities=29%  Similarity=0.482  Sum_probs=53.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 003017          325 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEV--------------KVNREKLQEQQLGMRKDIDELDILCRRLYGDR  390 (857)
Q Consensus       325 ~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei--------------~~~ke~le~q~~em~kdIdeL~~ls~KLk~QR  390 (857)
                      .-|++=|.+=.....||+.|.--+.+|++|....              ...|..+..+..-+.+-|+.|..|++-|+.+|
T Consensus       230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er  309 (309)
T PF09728_consen  230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER  309 (309)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            4577788888899999999999999999998754              34677777777778888888888888887776

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=89.03  E-value=0.12  Score=63.49  Aligned_cols=248  Identities=21%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          111 KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH  190 (857)
Q Consensus       111 K~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEa  190 (857)
                      ..|+.+..-|.++-+.+.+.|.+.++.+-.++.++..+   .-++.-..-.++++...-.+|-.||+.+..+.+.+-.-+
T Consensus       155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El---~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~  231 (859)
T PF01576_consen  155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNEL---QAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQL  231 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444555555555444444433333   233344444555555556666666666666666655555


Q ss_pred             hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 003017          191 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRH  270 (857)
Q Consensus       191 e~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~h  270 (857)
                      ..|...+..++..   |++=+..|.    .-+..|.+|..-+    -.|..+.+.+++++..+.++..--... +.++..
T Consensus       232 ~~l~r~k~~L~~q---Leelk~~le----eEtr~k~~L~~~l----~~le~e~~~L~eqleeE~e~k~~l~~q-lsk~~~  299 (859)
T PF01576_consen  232 SQLQREKSSLESQ---LEELKRQLE----EETRAKQALEKQL----RQLEHELEQLREQLEEEEEAKSELERQ-LSKLNA  299 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHH---HHhhHHHHH----hHhhhhhhhHHHH----HHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHhh
Confidence            5555544444432   222222222    2223333333322    223334444444443333322211111 112233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003017          271 EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ  350 (857)
Q Consensus       271 Ers~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~r  350 (857)
                      |=..|-.|+..+-.+.+..+|--|+.|...|..-++.+|..            ......+...+-.+..|++++..++.+
T Consensus       300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~------------~~~~~~LeK~k~rL~~EleDl~~eLe~  367 (859)
T PF01576_consen  300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEA------------NAKVSSLEKTKKRLQGELEDLTSELEK  367 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444433333333322            122334445555677777777777776


Q ss_pred             HHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHH
Q 003017          351 LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRR  385 (857)
Q Consensus       351 LekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~K  385 (857)
                      ...-...+.....+++.+.++.+.-.+.+......
T Consensus       368 ~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~  402 (859)
T PF01576_consen  368 AQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA  402 (859)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666665555554444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=88.94  E-value=44  Score=37.41  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 003017          298 EAELLNRRDKMEKELQERTRTFE  320 (857)
Q Consensus       298 E~~~~~r~EE~E~~L~EREk~FE  320 (857)
                      |..+..+..+++..|..+.++.+
T Consensus       133 E~~lvq~I~~L~k~le~~~k~~e  155 (294)
T COG1340         133 ERELVQKIKELRKELEDAKKALE  155 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555443

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=88.59  E-value=17  Score=34.24  Aligned_cols=90  Identities=28%  Similarity=0.428  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 003017           46 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE  125 (857)
Q Consensus        46 ~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~eke  125 (857)
                      ++..|..|+.+...++..+..++..|.++++.|....-++..-          |++=+....-..+..+.+......=-.
T Consensus        12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~f----------lken~~k~~rA~k~a~~e~k~~~~k~~   81 (126)
T PF13863_consen   12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKF----------LKENEAKRERAEKRAEEEKKKKEEKEA   81 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777888888888888888888888888887766665543          333333333334444444444444455


Q ss_pred             HHHHHHHHHHHHHhHHHHHH
Q 003017          126 SLQILKVEIDQIESENAQQE  145 (857)
Q Consensus       126 el~~lK~elEK~~a~~e~q~  145 (857)
                      +|..|..+|..+.+.+..-.
T Consensus        82 ei~~l~~~l~~l~~~~~k~e  101 (126)
T PF13863_consen   82 EIKKLKAELEELKSEISKLE  101 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56666666666555544433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.96  E-value=1e+02  Score=40.54  Aligned_cols=238  Identities=19%  Similarity=0.279  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH---hHHHH--------
Q 003017          171 QLKQQIETYRHQQE-LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH---SAEER--------  238 (857)
Q Consensus       171 eLKeEId~~R~Qke-~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~---~E~er--------  238 (857)
                      .|+.+|..+|.... .....-++|......|+..-...-+++..++++...+.+++..+.....   .+.-+        
T Consensus       279 ~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~  358 (1294)
T KOG0962|consen  279 NLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFH  358 (1294)
T ss_pred             HHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888 4455567899999999999999999999999999999988776654321   11111        


Q ss_pred             --hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003017          239 --LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKND-------RRKMLEEFEMQRMNQEAELLNRRDKME  309 (857)
Q Consensus       239 --LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~E-------rad~l~d~EmqkreLE~~~~~r~EE~E  309 (857)
                        |+...+-+-..+.-...-.....-.||....++=..+.......       +..=.+.++.-...+-+.+-++.-+++
T Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~  438 (1294)
T KOG0962|consen  359 QELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLE  438 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              11111111111111112222333344444443322222222111       111122222222333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHhhhHhHHHHHHhhhhhcHHHHHHHHH
Q 003017          310 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLE-KEKH----EVKVNREKLQEQQLGMRKDIDELDILCR  384 (857)
Q Consensus       310 ~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLe-kEr~----Ei~~~ke~le~q~~em~kdIdeL~~ls~  384 (857)
                      ...+.    |.+=+..|+..+.+-.......+..+.-..+++. .++.    .=..+...+..-.+..+.-+-.|..+.+
T Consensus       439 ~~~~~----~~~~~~~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~k  514 (1294)
T KOG0962|consen  439 AQKRI----KDEIKKLESKGLKDKSFQYEDSTDDLKKLDERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKK  514 (1294)
T ss_pred             HHHHH----HHHHHHHHHHhHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            32222    2222223444444444444444444444444433 1111    1122344455555666666777778888


Q ss_pred             HhhHhHHHHHHHHHH--HHHHHHhhccccc
Q 003017          385 RLYGDREQFKREKER--FLEFVEKHTSCKN  412 (857)
Q Consensus       385 KLk~QRE~~~~ERe~--fl~~vEklK~ckn  412 (857)
                      +|-.+.+.++....-  -+..+.+...|++
T Consensus       515 k~~~~~~~~~~~~~~~~~~~~~~k~~~~k~  544 (1294)
T KOG0962|consen  515 KLDEELDGLNKDAEKRAKLELLKKKLRKKD  544 (1294)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence            888888777766543  2344455554544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.81  E-value=1.1e+02  Score=40.48  Aligned_cols=98  Identities=21%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH------HHhHHHHhHHHHHH
Q 003017          172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL------QHSAEERLKKEECA  245 (857)
Q Consensus       172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~------~~~E~erLK~Ek~~  245 (857)
                      |..|-..+=.-...+-++.+.++.++..|+++--.|-+.+.++..+...|+..=..+..+      +..+-..+..+...
T Consensus       824 ~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e  903 (1294)
T KOG0962|consen  824 LRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE  903 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            333444444445567788888888888888888877777777776666665543333211      12344566667777


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHH
Q 003017          246 MRDYVQREIEAIRLDKEAFEATMR  269 (857)
Q Consensus       246 ~r~~~krelE~L~~ekEsF~~~M~  269 (857)
                      +.+.+......|...-++|..-|.
T Consensus       904 ~~~~~~~~~~~l~e~~s~~e~~k~  927 (1294)
T KOG0962|consen  904 LLERIQPLKVELEEAQSEKEELKN  927 (1294)
T ss_pred             hHhhhcchhhhHHHHHHHHHHHHH
Confidence            777777777777666666655444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=87.13  E-value=25  Score=37.72  Aligned_cols=107  Identities=24%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003017          125 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW  204 (857)
Q Consensus       125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW  204 (857)
                      +.|..+..+..+....+......|..--+++++.++++..|-..+.+|.+++..++.+..-..+|-..|.+         
T Consensus        12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~---------   82 (246)
T PF00769_consen   12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ---------   82 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            34667778888888899999999999999999999999988888888888877777666655555554444         


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 003017          205 EVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY  249 (857)
Q Consensus       205 E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~  249 (857)
                           +..+++-++..+.++++.-+    .|-.+|+.+-..++..
T Consensus        83 -----e~~e~~~~i~~l~ee~~~ke----~Ea~~lq~el~~ar~~  118 (246)
T PF00769_consen   83 -----ELREAEAEIARLEEESERKE----EEAEELQEELEEARED  118 (246)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence                 44455555555554444322    3444455444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK09039 hypothetical protein; Validated

Probab=86.50  E-value=62  Score=36.44  Aligned_cols=49  Identities=22%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             HHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003017          149 QEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR  197 (857)
Q Consensus       149 ~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK  197 (857)
                      ..-...|..++.+-.+-.+--..|++||+.+|.|...|..+.+.++++-
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334566666666666666666778888888888666666666666554

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.03  E-value=36  Score=33.34  Aligned_cols=72  Identities=32%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017           82 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK  156 (857)
Q Consensus        82 ~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk  156 (857)
                      ..+|+++-..+..++..+..++..|   .+++......+...++++..++.-++..++....+.++...+.++|+
T Consensus        75 ~~rL~~~~~~~ere~~~~~~~~~~l---~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk  146 (151)
T PF11559_consen   75 VERLKEQLEELERELASAEEKERQL---QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK  146 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444   44456667778888999999999999999999999999998888776

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=85.73  E-value=48  Score=34.43  Aligned_cols=58  Identities=24%  Similarity=0.543  Sum_probs=31.2

Q ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017           57 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE  114 (857)
Q Consensus        57 ~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE  114 (857)
                      +..+..+|..+|..|.+||..|+.+.+.|..++..|+.+-..|..+...|..-++.++
T Consensus        73 ~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   73 LKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555566666666666666555555555555555555555444444443333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK04863 mukB cell division protein MukB; Provisional

Probab=85.52  E-value=1.5e+02  Score=39.87  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHH
Q 003017          341 IQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDIL  382 (857)
Q Consensus       341 ~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~l  382 (857)
                      .++...++.-|..+..++...+-.+..++-++...|..|..+
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~  601 (1486)
T PRK04863        560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR  601 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444455555555555555555555555555555443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=85.44  E-value=94  Score=37.56  Aligned_cols=119  Identities=15%  Similarity=0.195  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhc
Q 003017          296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKD  375 (857)
Q Consensus       296 eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kd  375 (857)
                      +|-+.|+--+.+-|...+-=.+.||.-=.+.+.+|+..-+.++-......-|+.++-..--.+...---|+..-+.+-+-
T Consensus       246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~  325 (546)
T KOG0977|consen  246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR  325 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence            34444444444444444444444555555556666644444444443333333333222222222222334444555666


Q ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhHH
Q 003017          376 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRA  419 (857)
Q Consensus       376 IdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~e  419 (857)
                      |+.|..|=...+..=++...+++.=|.   +++  .-|-.++.+
T Consensus       326 I~dL~~ql~e~~r~~e~~L~~kd~~i~---~mR--eec~~l~~E  364 (546)
T KOG0977|consen  326 IEDLEYQLDEDQRSFEQALNDKDAEIA---KMR--EECQQLSVE  364 (546)
T ss_pred             HHHHHhhhhhhhhhhhhhhhhHHHHHH---HHH--HHHHHHHHH
Confidence            777766655555555555556654443   333  345555555

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.36  E-value=1.2e+02  Score=38.77  Aligned_cols=189  Identities=23%  Similarity=0.338  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 003017          171 QLKQQIETYRHQQEL---LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR  247 (857)
Q Consensus       171 eLKeEId~~R~Qke~---LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r  247 (857)
                      .|-+.++.+|.++.+   =++|.|+++=+-+..+.=---|-++.+.|++|+.+---+.+-.-.|.    +++|.|-.++.
T Consensus       235 dLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~k----e~~k~emad~a  310 (1243)
T KOG0971|consen  235 DLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK----ERYKEEMADTA  310 (1243)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH


Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH-------HHHHHHHH
Q 003017          248 DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRM---NQEAELLNRRDKME-------KELQERTR  317 (857)
Q Consensus       248 ~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emqkr---eLE~~~~~r~EE~E-------~~L~EREk  317 (857)
                      |.|    |.+.++||=-+.+|+               -+..++|+-+-   +|+.+++-=.+||+       ..-----+
T Consensus       311 d~i----EmaTldKEmAEERae---------------sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk  371 (1243)
T KOG0971|consen  311 DAI----EMATLDKEMAEERAE---------------SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK  371 (1243)
T ss_pred             HHH----HHHHhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHhHHHHHHhhhhhcHHHHHHH
Q 003017          318 TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV---NREKLQEQQLGMRKDIDELDIL  382 (857)
Q Consensus       318 ~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~---~ke~le~q~~em~kdIdeL~~l  382 (857)
                      ..|+.-.+==+-+=.||++...+-...+-=-+-|++-+.|++.   -+++|.++...|-.-|..|..|
T Consensus       372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ  439 (1243)
T KOG0971|consen  372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ  439 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=85.15  E-value=89  Score=37.04  Aligned_cols=301  Identities=22%  Similarity=0.244  Sum_probs=146.7

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH
Q 003017           83 DRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK  162 (857)
Q Consensus        83 ~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER  162 (857)
                      -++++.+..........  |-.-|.....+...--.-|..=+++|.+++.++......-..=..++..+.-.+++...--
T Consensus        97 ~r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kv  174 (522)
T PF05701_consen   97 FRAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKV  174 (522)
T ss_pred             HHHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666655543333  5555666666666666677777777777777777776666666666666666666554433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017          163 SELLRLQSQLKQQIETYRHQQELLLKEHED----LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER  238 (857)
Q Consensus       163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~----Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er  238 (857)
                      .+|..==..||+.|+..+.=...-.++.-.    ..+.+..|+.+-+...++-..|.+++..+..=.-+|.... .+-..
T Consensus       175 e~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~-~~l~~  253 (522)
T PF05701_consen  175 EELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS-AELES  253 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            333333355888888876533332222222    2245555666655555555556665544443333333322 34444


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHH
Q 003017          239 LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE------AELLNRRDKMEKEL  312 (857)
Q Consensus       239 LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE------~~~~~r~EE~E~~L  312 (857)
                      |+.|......   ..++...            +.-.....++..-..+..+|+--+.+|+      +.|..-.+-+...|
T Consensus       254 Lq~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL  318 (522)
T PF05701_consen  254 LQAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL  318 (522)
T ss_pred             HHHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443222222   2222211            0111111111222222222222222221      11222222222222


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH
Q 003017          313 QERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ  392 (857)
Q Consensus       313 ~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~  392 (857)
                       ++.+.       ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|..-....+.-.+.
T Consensus       319 -e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~  390 (522)
T PF05701_consen  319 -EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE  390 (522)
T ss_pred             -HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111       1111111112333344444444444444444444444445556677777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 003017          393 FKREKERFLEFVEKHTS  409 (857)
Q Consensus       393 ~~~ERe~fl~~vEklK~  409 (857)
                      ...+-.+....+++.+.
T Consensus       391 ~~~E~~~~k~E~e~~ka  407 (522)
T PF05701_consen  391 AKEEVEKAKEEAEQTKA  407 (522)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777777763

Several sequences in this family are described as being myosin heavy chain-like.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=84.78  E-value=65  Score=35.12  Aligned_cols=73  Identities=25%  Similarity=0.405  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017           15 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL   92 (857)
Q Consensus        15 ~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl   92 (857)
                      ..|| -||-...-|..+..++.-.|...    ..++.....+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus        10 ~~iq-~lD~e~~rl~~~~~~~~~~l~k~----~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          10 LAIQ-KLDLEKDRLEPRIKEIRKALKKA----KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHH-HHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455 45555555555555555555443    3456666677777778888888888777777666555555555544

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.62  E-value=42  Score=39.59  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 003017          174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE  253 (857)
Q Consensus       174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre  253 (857)
                      .+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+.    .+...|....+.-+.+++..
T Consensus       347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~  422 (493)
T KOG0804|consen  347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL  422 (493)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence            68899999999999999999999988888888888888888888888877766554    55556677777777777766


Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003017          254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR  305 (857)
Q Consensus       254 lE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~  305 (857)
                      .+.++.+.-+.-..                   +.||+-|=++|=.-|...+
T Consensus       423 ~e~~~~~~~s~d~~-------------------I~dLqEQlrDlmf~le~qq  455 (493)
T KOG0804|consen  423 EEREKEALGSKDEK-------------------ITDLQEQLRDLMFFLEAQQ  455 (493)
T ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHhHheehhhhh
Confidence            66655544443333                   3367777666655554443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=83.31  E-value=47  Score=35.39  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHhhhh
Q 003017          251 QREIEAIRLDKEAFEATMRHEQLVLSE---KAKNDRRKMLE-EFEMQRMN  296 (857)
Q Consensus       251 krelE~L~~ekEsF~~~M~hErs~~~e---k~q~Erad~l~-d~Emqkre  296 (857)
                      +.+|-.++..++.|+...++||..|.+   |+-.=..++.. =++|-+|+
T Consensus       144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn  193 (202)
T PF06818_consen  144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN  193 (202)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677888999999999999974   44444444444 34555543

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.06  E-value=1.3e+02  Score=36.57  Aligned_cols=26  Identities=15%  Similarity=0.373  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003017          281 NDRRKMLEEFEMQRMNQEAELLNRRD  306 (857)
Q Consensus       281 ~Erad~l~d~EmqkreLE~~~~~r~E  306 (857)
                      .|+.+.++.|+++=..++..++-.++
T Consensus       456 ~E~~~~l~~~~~el~~~~~~~~~~k~  481 (581)
T KOG0995|consen  456 EEKIQILGEIELELKKAESKYELKKE  481 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455554444444444443333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.68  E-value=29  Score=38.52  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017          161 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ  195 (857)
Q Consensus       161 ER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~  195 (857)
                      +.+.+..-..++.++.+.+-.|........+.|+.
T Consensus       100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555566677777777777777777777753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=81.15  E-value=1.1e+02  Score=35.29  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=13.9

Q ss_pred             HHHHHhhhHH-HHHHHHHHHHHhhHHHHH
Q 003017           76 QALDKKSDRV-KEKENDLAARLKSVKERE  103 (857)
Q Consensus        76 qaLe~k~~~l-keKEkdl~~K~k~LKEkE  103 (857)
                      .|++++.++| ++.|.|-.++....++-+
T Consensus       110 aAaE~khrKli~dLE~dRe~haqdaaeGD  138 (561)
T KOG1103|consen  110 AAAEKKHRKLIKDLEADREAHAQDAAEGD  138 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4555555543 445555555554444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.21  E-value=31  Score=38.35  Aligned_cols=47  Identities=38%  Similarity=0.538  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 003017          176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA  222 (857)
Q Consensus       176 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~  222 (857)
                      ++.+......|.+|...|.++-...|.|=+.|+.-...|+.|...+.
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.13  E-value=70  Score=32.27  Aligned_cols=68  Identities=24%  Similarity=0.426  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 003017          172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL  239 (857)
Q Consensus       172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erL  239 (857)
                      |--+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+.+.....++
T Consensus        29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv   96 (140)
T PF10473_consen   29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV   96 (140)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777778888899999999999999999999999999999999999988888887776554444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	857
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	9e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	9e-07
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	5e-06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	1e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	4e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	1e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	9e-05
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	9e-06
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	1e-05
1yvl_A	683	Signal transducer and activator of transcription 1	2e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-05
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	1e-04
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	3e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  102 bits (257), Expect = 1e-22
 Identities = 62/349 (17%), Positives = 137/349 (39%), Gaps = 18/349 (5%)

Query: 30   AKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE 89
             +Q+E     +E+ +  +E  +   + L + E + +   E+    ++ L  +++   E E
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 90   NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQ 149
                      +E E+ +   E ++E E+       E  Q L+ E  +++ +    E Q++
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEE-------ERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 150  EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209
            EE    +  + EK            +I+       ++  ++  L ++R+  E+    L  
Sbjct: 966  EEEAARQKLQLEKV-------TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018

Query: 210  KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269
               E  ++ + +   K K E +    E RLKKEE + ++  + + +      +  E    
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 270  HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLND 329
             +  +   KA+  +++   +  + R+  E    N   K  +EL+      +E  E     
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 330  IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDE 378
                   AE + +++  E + L+ E  +        QE +    KD D+
Sbjct: 1139 RNK----AEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  100 bits (251), Expect = 8e-22
 Identities = 57/315 (18%), Positives = 138/315 (43%), Gaps = 14/315 (4%)

Query: 70   KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 129
            K+ R+E+ +  K + ++  +         +KE E+      ++  L ++KL A+ E    
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 130  LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
             +    ++ ++  + E  + E   +++  EE   +L   + +++QQ+     Q E     
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 190  HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 249
             + LQ ++   + + + +++    +  +  K+  E+K LE+        L +EE      
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE------ 1024

Query: 250  VQREIEAIRLDKEAFEATMR--HEQLVLSEKAKNDRRKMLEEFEMQR---MNQEAELLNR 304
               + + +   K   E+ +     +L   EK++ +  K+  + E +      Q AEL  +
Sbjct: 1025 --EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 305  RDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREK 364
              +++ +L ++    +    R L D    K  A  +I+E++S    L+++    K  R K
Sbjct: 1083 IAELKAQLAKKEEELQAALAR-LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 365  LQEQQLGMRKDIDEL 379
             ++Q+  + ++++ L
Sbjct: 1142 AEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 98.8 bits (246), Expect = 3e-21
 Identities = 62/356 (17%), Positives = 157/356 (44%), Gaps = 22/356 (6%)

Query: 7    FCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALD----QQEF 62
            F I  LL+V  Q+     +     + +E + + E + K +E++        +    + + 
Sbjct: 844  FXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903

Query: 63   EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIA 122
            E     E  E R +   KK +  +E  +++ AR++  +ER + ++AE+KK++ +   L  
Sbjct: 904  ETELYAEAEEMRVRLAAKKQEL-EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL-- 960

Query: 123  DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 182
             +E L+  +    +++ E    + +I++    + I E++ ++L + +  L++++      
Sbjct: 961  -EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 183  QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKE 242
                 ++ ++L + + K E     L+ +  +  K ++++   K+KLE       E++ + 
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 243  ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL 302
            +       + + +  + ++E   A  R E        KN+  K + E E    + + +L 
Sbjct: 1080 Q---AQIAELKAQLAKKEEELQAALARLEDE---TSQKNNALKKIRELESHISDLQEDLE 1133

Query: 303  N---RRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEK 355
            +    R+K EK+ ++ +   E  +  + + +           QE++    + + +K
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ-----QELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.0 bits (213), Expect = 3e-17
 Identities = 61/319 (19%), Positives = 139/319 (43%), Gaps = 31/319 (9%)

Query: 81   KSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESE 140
            K  R +E+       L+  KER++  +AE K+LE +  +L  +K  LQ            
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ------------ 898

Query: 141  NAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKF 200
                  ++Q E +     EE +  L   + +L++ +     + E   +  + LQ +++K 
Sbjct: 899  -----EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 201  EKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLD 260
            +++   L+E+ +E           ++KL+  + +A+ ++KK E  +   ++ +   +  +
Sbjct: 954  QQQMLDLEEQLEEEEA-------ARQKLQLEKVTADGKIKKMEDDILI-MEDQNNKLTKE 1005

Query: 261  KEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 320
            ++  E   R   L  +   + ++ K L + + +  +  +EL  R  K EK  QE     E
Sbjct: 1006 RKLLEE--RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE----LE 1059

Query: 321  EKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 380
            + + ++  + + L E       +I   + QL K++ E++    +L+++       + ++ 
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

Query: 381  ILCRRLYGDREQFKREKER 399
             L   +   +E  + EK  
Sbjct: 1120 ELESHISDLQEDLESEKAA 1138

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 52/267 (19%), Positives = 118/267 (44%), Gaps = 11/267 (4%)

Query: 153  QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 212
             K+   EEE         + K++ +    + + L ++H  L +++   +++ +   E   
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 213  EINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ 272
            E  + + ++A +K++LE++ H  E R+++EE       Q + E  ++ ++  +   + E+
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEE---ERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 273  LVLS----EKAKNDRRKMLEEFEMQRMNQE---AELLNRRDKMEKELQERTRTFEEKRER 325
               +    +  K      +++ E   +  E    +L   R  +E+ + + T    E+ E+
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 326  VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRR 385
               ++  LK   E  I E++    + EK + E++  + KL+ +   + + I EL      
Sbjct: 1027 A-KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 386  LYGDREQFKREKERFLEFVEKHTSCKN 412
            L     + + E +  L  +E  TS KN
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKN 1112

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 80.5 bits (199), Expect = 1e-15
 Identities = 32/275 (11%), Positives = 95/275 (34%), Gaps = 17/275 (6%)

Query: 24   QRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSD 83
            Q+       ++    + +   +++  +R  +     Q     H+   +++  +    +  
Sbjct: 823  QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882

Query: 84   RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ 143
              +  +  +  +      R    K E KKL++E         S++  K     +E++  Q
Sbjct: 883  YHRTLKAIVYLQCC---YRRMMAKRELKKLKIEA-------RSVERYKKLHIGLENKIMQ 932

Query: 144  QELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 203
             + +I E+        +E   LL   + L+    T   +    ++     +++ +     
Sbjct: 933  LQRKIDEQ-------NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 204  WEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEA 263
               L E+  ++ KE  +   EKK +E+     +   ++    +++               
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045

Query: 264  FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE 298
                 +     + +K   + +++  +   +R+  +
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 80.2 bits (198), Expect = 2e-15
 Identities = 38/262 (14%), Positives = 110/262 (41%), Gaps = 16/262 (6%)

Query: 10   YGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREE 69
            Y  ++     L    R  L  + +   +  E K   I++ +R  ++ +       +    
Sbjct: 835  YQCMRDATIALQALLRGYL-VRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 70   KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 129
            +   R     ++  ++K +        +SV+  +K     E K+   ++K+    +  + 
Sbjct: 894  QCCYRRMMAKRELKKLKIEA-------RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 130  LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
            L  +++ +E   + +  +++ + ++L+++EEE          L+++I   R +      E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 190  HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 249
             + +++  +K++ E    ++   E+ ++   +  EK++L +  H   + + +    M   
Sbjct: 1007 KKTIEEWADKYKHE---TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET---MEKK 1060

Query: 250  VQREIEAIRLDKEAFEATMRHE 271
            +  E + + LD    +  +R++
Sbjct: 1061 LVEETKQLELDLN--DERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 78.2 bits (193), Expect = 7e-15
 Identities = 47/274 (17%), Positives = 109/274 (39%), Gaps = 20/274 (7%)

Query: 95   RLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 154
            R+  V++R + ++     L+   +  +   +   +L+     I  ++ +  L      + 
Sbjct: 827  RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886

Query: 155  LKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEI 214
            LK     +    R+ ++ + +      + ++  +  E  ++     E +   L  K DE 
Sbjct: 887  LKAIVYLQCCYRRMMAKRELK------KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 215  NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLV 274
            NKE + + ++   LE    +  E+L+ +   +R     E EA               +L 
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLR---MSEEEAKNATNRVLSLQEEIAKLR 997

Query: 275  LSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLK 334
                     +K +EE+  +  ++  +L++   +    L+      +E+  R ++D    K
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE----KEELNRRIHD--QAK 1051

Query: 335  EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 368
            E+ E   +++  E  QLE +     +N E+L+ Q
Sbjct: 1052 EITETMEKKLVEETKQLELD-----LNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 6e-12
 Identities = 37/252 (14%), Positives = 98/252 (38%), Gaps = 16/252 (6%)

Query: 166  LRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK 225
            + +Q   +  +   R + + +      LQ     +    +     R+  +   +K     
Sbjct: 820  IIIQKFQRMYVV--RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877

Query: 226  KKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR-----HEQLVLSEKAK 280
                    + +  +  + C  R   +RE++ ++++  + E   +       +++  ++  
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937

Query: 281  NDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE-----RVLND-IAHLK 334
            +++ K  +    +  N E       +K+  +++    + EE +        L + IA L+
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 335  EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFK 394
            +       E K+  +  +K KHE +    +L+EQ   ++ + +EL+   RR++   ++  
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN---RRIHDQAKEIT 1054

Query: 395  REKERFLEFVEK 406
               E+ L    K
Sbjct: 1055 ETMEKKLVEETK 1066

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 33/273 (12%), Positives = 99/273 (36%), Gaps = 6/273 (2%)

Query: 107  KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELL 166
             A   +       +   +    + K      ++  A Q L      +        + + +
Sbjct: 809  YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868

Query: 167  RLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 226
             +Q  ++  +    + + L    +      R   ++E + L  +   + + ++     + 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 227  KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKM 286
            K+ +LQ   +E   KE  ++ + +         + E   + +   ++   E      R +
Sbjct: 929  KIMQLQRKIDE-QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 287  LEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKS 346
              + E+ ++ +E          +K ++E    ++ + E++++++     + + E +E+  
Sbjct: 988  SLQEEIAKLRKELHQTQTE---KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

Query: 347  ERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 379
                  KE  E     +KL E+   +  D+++ 
Sbjct: 1045 RIHDQAKEITETM--EKKLVEETKQLELDLNDE 1075

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.2 bits (189), Expect = 2e-14
 Identities = 90/595 (15%), Positives = 177/595 (29%), Gaps = 152/595 (25%)

Query: 57  LDQQEFEISHREEK-LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE- 114
           +D +  E  ++ +  L   E A     D  K+ ++   + L   +E +  + +++     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSK-EEIDHIIMSKDAVSGT 64

Query: 115 -------LEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEE-KSELL 166
                  L KQ+ +  K   ++L++    + S        I+ E ++  +       +  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-------PIKTEQRQPSMMTRMYIEQRD 117

Query: 167 RLQS--QLKQQIETYRHQQELLLKEHEDLQQDREK----------FEKEWEVLDEKRDE- 213
           RL +  Q+  +    R Q  L L++   L + R              K W  LD      
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 214 -----------IN-KEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 261
                      +N K         + L+KL +    ++     +  D+       I   +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 262 EAFEATMRHEQ-----LVLSEKAKND---RRKMLEEFEMQ-------RMNQEAELLNRRD 306
                 ++ +      LVL            K    F +        R  Q  + L+   
Sbjct: 232 AELRRLLKSKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 307 KMEKELQERTRTF--EEKRE---RVLN-DIAHLKEVAE----------GEIQEIKSERDQ 350
                L   + T   +E +    + L+     L                E   I+     
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLAT 343

Query: 351 LEKEKHEVKVNREKLQEQQLGMRKDIDELD-ILCRRLYGDREQF---------------- 393
            +  KH   VN +KL      +   ++ L+    R+++     F                
Sbjct: 344 WDNWKH---VNCDKLTTI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 394 ---KREKERFL-EFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNR 449
              K +    + +  +   S            I ++ L  +          +    + + 
Sbjct: 398 DVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDHY 453

Query: 450 Q-------GDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIF-SISPIK-KSEH 500
                    D+  PY      SH G +L   +    M+  R     +F     ++ K  H
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLDFRFLEQKIRH 509

Query: 501 ISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYS--IPEDEPQSSFRLVND 553
            ST+        S + T+ Q K              Y   I +++P+   RLVN 
Sbjct: 510 DSTAW---NASGSILNTLQQLKF-------------YKPYICDNDPKYE-RLVNA 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 5e-11
 Identities = 78/539 (14%), Positives = 162/539 (30%), Gaps = 149/539 (27%)

Query: 109 EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL 168
           E  + + + + +++            D  + ++  + +  +EE   + ++++  S  LRL
Sbjct: 10  ETGEHQYQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 169 QSQLKQQIETYRHQQELLLKE--HEDLQQD----REKFEKE-------WEVLDEKRDEIN 215
                    T   +QE ++++   E L+ +        + E         +  E+RD + 
Sbjct: 68  -------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 216 KEQEKIADE----KKKLEKLQHSAEERLKKEE---------C--------AMRDY-VQRE 253
            + +  A       +   KL+ +  E L+  +                      Y VQ  
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC- 178

Query: 254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKME---K 310
               ++D + F   +++        +     +ML++   Q         +    ++    
Sbjct: 179 ----KMDFKIFWLNLKNCN------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 311 ELQERTRTF--EEKRER---VLNDIAHLKEVAEGEIQ-EI------KSERDQLEKEKHEV 358
            +Q   R     +  E    VL ++ + K      +  +I      K   D L       
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS----AA 284

Query: 359 KVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMR 418
                 L    + +  D +   +L + L    +   RE                  E +R
Sbjct: 285 TTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRR-----LSIIAESIR 338

Query: 419 AFV--ISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSG 476
             +    N +  + +      L  + E  L     +V  P +                  
Sbjct: 339 DGLATWDNWKHVNCDK-----LTTIIESSL-----NVLEPAE------------------ 370

Query: 477 GHMSWLRKCTSKIFSISPIKKSEHISTSMLE---EEEPQSAVPTIMQEKAEGPGVLVSKE 533
                 RK   +  S+ P   S HI T +L     +  +S V  ++ +       L    
Sbjct: 371 -----YRKMFDR-LSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNK-------LHKYS 415

Query: 534 AIG-------YSIP----------EDEPQSSFRLV---NDSTNREMDDEYAPSVDGHSY 572
            +         SIP          E+E      +V   N     + DD   P +D + Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 67/449 (14%), Positives = 137/449 (30%), Gaps = 154/449 (34%)

Query: 70  KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQI 129
           +++    +    S  +K + + + A L+ + + + +                  +  L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------------------ENCLLV 249

Query: 130 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189
           L      +++  A     +   C+ L +    K     L +     I    H   L   E
Sbjct: 250 L----LNVQNAKAWNAFNLS--CKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 190 HEDLQQDREKFEKEWEVLDEKRDEINKEQ------------EKIADEKKKLEKLQHSAEE 237
            + L        K    LD +  ++ +E             E I D     +  +H   +
Sbjct: 303 VKSL------LLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 238 RLKKEECAMRDYVQREIEAIRLDKEAFE-ATMRH--EQL------------VLS----EK 278
           +L                 I       E A  R   ++L            +LS    + 
Sbjct: 354 KLTT--------------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 279 AKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAE 338
            K+D   ++ +           L+ ++ K      E T +        +  I +L     
Sbjct: 400 IKSDVMVVVNKLHKYS------LVEKQPK------ESTIS--------IPSI-YL----- 433

Query: 339 GEIQEIKSERDQLEKEKHEVKVNREKLQE-----------------QQLG--MRK-DIDE 378
               E+K + +  E   H   V+   + +                   +G  ++  +  E
Sbjct: 434 ----ELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 379 LDILCRRLYGDREQFKREKERFLEFVEKH--TSCKNCGEMM---------RAFVISNLQL 427
              L R ++ D   F     RFLE   +H  T+    G ++         + ++  N   
Sbjct: 489 RMTLFRMVFLD---F-----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--D 538

Query: 428 PDDEAR-NDIP--LPQVAERCLGNRQGDV 453
           P  E   N I   LP++ E  + ++  D+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDL 567

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 11/191 (5%)

Query: 9    IYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHRE 68
            +  +      KL   +R    A       E++    ++E+  +    AL  +        
Sbjct: 826  LEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIA 885

Query: 69   EKLERREQALDKKSDRVKEKE-----NDLAARLKSVKEREKFVKAEEKKLELEKQKLIAD 123
              L++  + L K  +    K      N+    + +V+ + K ++A + + +  + +  +D
Sbjct: 886  VLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD 945

Query: 124  KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQ 183
              S+     E     + N   EL  +++    +     KS     ++ L  ++E  R Q+
Sbjct: 946  LLSILAQLTE----LNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE--RLQK 999

Query: 184  ELLLKEHEDLQ 194
               L  H    
Sbjct: 1000 IEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 15/204 (7%)

Query: 167  RLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK 226
            +  S+L+    + + +  L+ +E                 +D     + K +++ A+  +
Sbjct: 821  QEVSELEAIYNSLQTKLRLIKREPFVAPA-----GLTPNEIDSTWSALEKAEQEHAEALR 875

Query: 227  KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKM 286
               K Q      L+K     R   + E  A    K  +  +      + + +AK      
Sbjct: 876  IELKRQKKIAVLLQKYN---RILKKLENWATT--KSVYLGSNETGDSITAVQAKLKN--- 927

Query: 287  LEEFEMQRMNQEAELLNRRDKMEKELQERT-RTFEEKRERVLNDIAHLKEVAEGEIQEIK 345
            LE F+ +  + E +  +    +  +L E       E  ER     A      +   +  K
Sbjct: 928  LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 987

Query: 346  SERDQLEKEKHEVKVNREKLQEQQ 369
            +     E E+ +   +        
Sbjct: 988  NTL-LAELERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 36/266 (13%), Positives = 95/266 (35%), Gaps = 14/266 (5%)

Query: 38   ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLK 97
             +EE R+      ++K           +   + +  ++ +L+ +     +    + + + 
Sbjct: 753  RIEEAREQRLGSEQTKS----DYLKRANELVQWINDKQASLESR--DFGDSIESVQSFMN 806

Query: 98   SVKEREKFVKAEEKKLELEKQKLI-ADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156
            + KE +K  K  + +   E + +  + +  L+++K E     +     E+        L+
Sbjct: 807  AHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEID--STWSALE 864

Query: 157  INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE--KEWEVLDEKRDEI 214
              E+E +E LR++ + +++I     +   +LK+ E+    +  +    E           
Sbjct: 865  KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAK 924

Query: 215  NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE---AIRLDKEAFEATMRHE 271
             K  E    E + LE   +S    +  +   +      E+         ++        E
Sbjct: 925  LKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 984

Query: 272  QLVLSEKAKNDRRKMLEEFEMQRMNQ 297
                +  A+ +R + +E+      + 
Sbjct: 985  TYKNTLLAELERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 19/262 (7%)

Query: 72   ERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK-QKLIADKESLQIL 130
            E REQ L  +  +    +       + + +++  +++ +    +E  Q  +   +  +  
Sbjct: 756  EAREQRLGSEQTKSDYLKRANELV-QWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814

Query: 131  KVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190
            +    +        EL+      + K+   ++   +        +I++     E   +EH
Sbjct: 815  E----KPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870

Query: 191  EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL----KKEECAM 246
             +  +   K +K+  VL +K + I K+ E  A  K        + +       K +    
Sbjct: 871  AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN--- 927

Query: 247  RDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD 306
               ++      +  +    + +      L+E   N   ++ E  +     Q   + +  +
Sbjct: 928  ---LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 984

Query: 307  KMEKELQ---ERTRTFEEKRER 325
              +  L    ER +  E+    
Sbjct: 985  TYKNTLLAELERLQKIEDLHHH 1006

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 48/401 (11%), Positives = 125/401 (31%), Gaps = 15/401 (3%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEE----EMRSKISALDQQEFEISHREEKL 71
           +++   +  +  L    +   +  E K  S        +       ++       R E+L
Sbjct: 309 QLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERL 368

Query: 72  ERREQALDKKSDRVKEKENDLAARLKSVKEREK---FVKAEEKKLELEKQKLIADKESLQ 128
           +   +   +K+   +   +   A L+           +KA  KK E  +  L A ++ ++
Sbjct: 369 DHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVE 428

Query: 129 ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQ-SQLKQQIETYRHQQELLL 187
            +     ++   +      +   CQK+    +    L + +   L++  +      +L L
Sbjct: 429 QIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYL 488

Query: 188 KEHEDLQQDREKFEKEWEVL-DEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAM 246
           +  +         E   E L D       +E + +    ++ +     A++  +      
Sbjct: 489 EYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIH 548

Query: 247 RDYVQREIEAIRLDKEAFEATMRHEQLVLS-----EKAKNDRRKMLEEFEMQRMNQEAEL 301
            +  +               T    Q +        +    R + L E E  R  Q   L
Sbjct: 549 NEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALME-EHARQQQNERL 607

Query: 302 LNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVN 361
             +       +    +T  E+  R+  ++    E     +++ +      + +  +++ +
Sbjct: 608 RKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGD 667

Query: 362 REKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 402
            +++QE  +   K  +      R  +             +E
Sbjct: 668 HQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVE 708

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 26/232 (11%), Positives = 73/232 (31%), Gaps = 3/232 (1%)

Query: 14  QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLER 73
            V       +   I+      FE+  +              +   Q    +S  + +   
Sbjct: 585 SVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVE 644

Query: 74  --REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILK 131
              ++  D     V+          ++  + E     +E +  LE+QK++   E+ +  +
Sbjct: 645 PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA-EKAR 703

Query: 132 VEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHE 191
            E+ ++E+ +   E     + +     E  + E      Q K + +    + E  L+  +
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK 763

Query: 192 DLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEE 243
            +++    + +    L+  + +     E    ++        +  +      
Sbjct: 764 KVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 49.4 bits (117), Expect = 5e-06
 Identities = 35/276 (12%), Positives = 86/276 (31%), Gaps = 41/276 (14%)

Query: 74  REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVE 133
           R        D   +    +        E  +    +   L   + + +  +  L +  V+
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD 639

Query: 134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
           +  +E  + +              +  ++S  L ++     Q    +H+ + L +E    
Sbjct: 640 VQSVEPVDQRTR------------DALQRSVQLAIEITTNSQEAAAKHEAQRLEQE-ARG 686

Query: 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHS--AEERLKKEECAMRDYVQ 251
           + +R+K   + E    +++ +  E   +A E     K +    AE    + E        
Sbjct: 687 RLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGE-------- 738

Query: 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311
             +   +L  +A                     +   E E  +  +E EL+  R ++E E
Sbjct: 739 GSVLQAKLKAQA------------------LAIETEAELERVKKVREMELIYARAQLELE 780

Query: 312 LQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSE 347
           + +  +    + ++       L      ++     E
Sbjct: 781 VSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 27/225 (12%), Positives = 77/225 (34%), Gaps = 4/225 (1%)

Query: 153 QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 212
           +      E   +     + L +  +     Q  L+    D  Q  E  ++      ++  
Sbjct: 600 RMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD-VQSVEPVDQRTRDALQRSV 658

Query: 213 EINKEQE---KIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269
           ++  E     + A  K + ++L+  A  RL++++   +   ++  + +   +    A   
Sbjct: 659 QLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVES 718

Query: 270 HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLND 329
                   +++ +  ++  E  + +   +A+ L    + E E  ++ R  E    R   +
Sbjct: 719 TGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLE 778

Query: 330 IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 374
           +   K      ++  K +          ++       E Q+ + +
Sbjct: 779 LEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 33/229 (14%), Positives = 74/229 (32%), Gaps = 14/229 (6%)

Query: 64  ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIAD 123
           +   E   +           R +         + SV  +      +  +  L++   +A 
Sbjct: 603 VFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAI 662

Query: 124 KESLQILKVEIDQIESENAQQELQIQEECQKLKI---NEEEKSELLRLQSQLKQQIETYR 180
           + +    +      E++  +QE + + E QK+      E+ + ELL L++       T  
Sbjct: 663 EITTNSQEAAAKH-EAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGN 721

Query: 181 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 240
            + E       + + +  + E E  VL  K        E  A+    LE+++   E  L 
Sbjct: 722 AKAE------AESRAEAARIEGEGSVLQAKLKAQALAIETEAE----LERVKKVREMELI 771

Query: 241 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEE 289
                +   V +  +   ++ + F+                   +M  +
Sbjct: 772 YARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 23/167 (13%), Positives = 54/167 (32%), Gaps = 4/167 (2%)

Query: 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECA--MRDYVQ 251
            Q + +  K    +       N+     +  +K  ++   +    LK+++    +     
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 884

Query: 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311
           R ++ +          +   +   S  A   + K LE F+ +  + E +  +    +  +
Sbjct: 885 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 944

Query: 312 LQERTRTF-EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHE 357
           L E       E  ER     A      +   +  K+     E E+ +
Sbjct: 945 LTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL-LAELERLQ 990

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 48.5 bits (116), Expect = 9e-06
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEM-RSKISALDQQEFEISHREEKLERR 74
                       +D+     E   +E  +++  E+ R K  A+  Q++    ++ +    
Sbjct: 836 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 895

Query: 75  EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKL---------ELEKQKLIADKE 125
            +++   S+   +    + A+LK+++  +   ++ E +          +L +       E
Sbjct: 896 TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 955

Query: 126 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL 168
             +       Q   +    +   +     L    E   ++  L
Sbjct: 956 LTERKDTFFAQ---QWTGVKSSAETYKNTLLAELERLQKIEDL 995

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 51.5 bits (122), Expect = 9e-07
 Identities = 37/219 (16%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE 75
                  +  A L+ K+ +F  + +E        +   I +  ++E + +    K     
Sbjct: 376 VDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVK-AGIYSKPGGYR 434

Query: 76  QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEID 135
             + K  D  K+   +    +++ +  + ++K++E   +   Q      E  + ++VE  
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494

Query: 136 QIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195
           + ES  A  ++  + + +  ++ E+++      Q  LKQ  E   + +  LLKE E    
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERS---YQEHLKQLTEKMENDRVQLLKEQERTLA 551

Query: 196 DREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHS 234
            + + E+E  + +  + E    + +I D + K+ + +  
Sbjct: 552 LKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 50.0 bits (118), Expect = 3e-06
 Identities = 45/287 (15%), Positives = 107/287 (37%), Gaps = 10/287 (3%)

Query: 75  EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI 134
           E A+   +          A      +  +K     E   EL      +++E++++     
Sbjct: 313 ENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSS 372

Query: 135 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 194
            +      Q+EL  Q E ++    ++ +       S L Q I  +   +E +        
Sbjct: 373 FKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVI--FSPLEEEVKAGIYSKP 430

Query: 195 QDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREI 254
                F ++ + L +K  E  ++  +  +  +   K + S  + + + +  + +  ++EI
Sbjct: 431 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK-EKEI 489

Query: 255 EAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQE 314
           E  R+  E+     +    +L E  + + + M ++    + + +       +   + L+E
Sbjct: 490 EVERVKAES----AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE 545

Query: 315 RTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVN 361
           + RT   K +        LKE  + E + +K+E   L+ +    K  
Sbjct: 546 QERTLALKLQ---EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 34/219 (15%), Positives = 85/219 (38%), Gaps = 6/219 (2%)

Query: 31  KQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHR---EEKLERREQALDKKSDRVKE 87
            +  F+      +K +  ++  K     +Q  E S                ++    +  
Sbjct: 369 IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYS 428

Query: 88  KENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 147
           K       ++ +++ +K    E +K    ++ L    +S + +   I Q +    ++E +
Sbjct: 429 KPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKE 488

Query: 148 IQEECQKLKINEEEKSELLRLQSQLKQQIETY-RHQQELLLKEHEDLQQDREKFEKEWEV 206
           I+ E  K +  +     L  +Q + +Q +E   R  QE L +  E ++ DR +  KE E 
Sbjct: 489 IEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548

Query: 207 LDEKRDEINKE--QEKIADEKKKLEKLQHSAEERLKKEE 243
               + +  ++  +E    E + ++      + ++++ +
Sbjct: 549 TLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 49.2 bits (116), Expect = 5e-06
 Identities = 22/187 (11%), Positives = 78/187 (41%), Gaps = 4/187 (2%)

Query: 18  QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 77
             LL    + L+ + +          +   ++++       ++  +    EE L+   ++
Sbjct: 408 SGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKS 467

Query: 78  LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI 137
            +  +D + + +  L  + K ++      ++ +   ++  +     +++ Q+++ +    
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ---RKNEQMMEQKERSY 524

Query: 138 ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 197
           +    Q   +++ + +   + E+E++  L+LQ Q +   E ++ +  ++  E +DLQ   
Sbjct: 525 QEHLKQLTEKMEND-RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583

Query: 198 EKFEKEW 204
            + +   
Sbjct: 584 RRRKACT 590

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 37/271 (13%), Positives = 93/271 (34%), Gaps = 7/271 (2%)

Query: 17  IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
           +QK +      +  K Q     L+E      +  R  I    +  F+      + E   Q
Sbjct: 328 VQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQ 387

Query: 77  ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 136
              K+ D  K+  N  A+  +     +      E++++                  ++ +
Sbjct: 388 LEKKRDDFCKQ--NQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKK 445

Query: 137 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
              E  ++ +Q +E  Q    ++E  ++   +    +   E  +  +   +K        
Sbjct: 446 KYYEEPRKGIQAEEILQTYLKSKESMTD--AILQTDQTLTEKEKEIEVERVKAESAQASA 503

Query: 197 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
           +   E + +       +    QE +    +K+E  +    + LK++E  +   +Q + + 
Sbjct: 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR---VQLLKEQERTLALKLQEQEQL 560

Query: 257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKML 287
           ++   +     M++E   L  K +  +   +
Sbjct: 561 LKEGFQKESRIMKNEIQDLQTKMRRRKACTI 591

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 44.9 bits (105), Expect = 1e-04
 Identities = 28/253 (11%), Positives = 93/253 (36%), Gaps = 3/253 (1%)

Query: 121 IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYR 180
           +   E+  +   +I+   +         Q+  QK+++  E   ELL L    +++     
Sbjct: 309 LPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVF 368

Query: 181 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE---KKKLEKLQHSAEE 237
            +      +H   ++   + EK+ +   ++  E + ++     +       E+++     
Sbjct: 369 IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYS 428

Query: 238 RLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 297
           +       ++     + +     ++  +A    +  + S+++  D     ++   ++  +
Sbjct: 429 KPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKE 488

Query: 298 EAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHE 357
                 + +  +   +       +  + +       +E  +   ++++++R QL KE+  
Sbjct: 489 IEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548

Query: 358 VKVNREKLQEQQL 370
               + + QEQ L
Sbjct: 549 TLALKLQEQEQLL 561

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 38/239 (15%), Positives = 87/239 (36%), Gaps = 11/239 (4%)

Query: 171 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230
               QIE     Q+ +    + + Q  +   +  + L +   +  +E  ++       + 
Sbjct: 317 LALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDV 376

Query: 231 LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM---RHEQLVLSEKAKNDRRKML 287
                +E   + E    D+ ++  EA           +     E++     +K    ++ 
Sbjct: 377 DHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLF 436

Query: 288 EEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSE 347
            +       +  E   +  + E+ LQ     + + +E + + I    +    + +EI+ E
Sbjct: 437 VQKLQDLKKKYYEEPRKGIQAEEILQT----YLKSKESMTDAILQTDQTLTEKEKEIEVE 492

Query: 348 RDQLEKEKHEVKVNREKLQEQQLGM----RKDIDELDILCRRLYGDREQFKREKERFLE 402
           R + E  +   K+  E  ++ +  M    R   + L  L  ++  DR Q  +E+ER L 
Sbjct: 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 50.3 bits (119), Expect = 2e-06
 Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 32/323 (9%)

Query: 87  EKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQEL 146
           +K  DL  ++  V  ++      ++K +L  + +   +E+  +    +  +    A +++
Sbjct: 355 QKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDV 414

Query: 147 QIQ----------EECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
                            +    +     +  L   L++  E       LL +E       
Sbjct: 415 SGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDL 474

Query: 197 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
           R KF++ W+     R   N+  + +  E      +   A +   + +   + + +  I  
Sbjct: 475 RAKFKERWQ-----RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSH-RDTIVL 528

Query: 257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316
           +   +    A +       + +       +        ++   E+   R+ +E +L+   
Sbjct: 529 LCKPEPELNAAIPSANPAKTMQGSEVVNVL-----KSLLSNLDEVKKEREGLENDLKSVN 583

Query: 317 RTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
                K    L          +G I E      +L++    +    ++  ++Q      +
Sbjct: 584 FDMTSKFLTALAQ--------DGVINEEALSVTELDRVYGGLTTKVQESLKKQ---EGLL 632

Query: 377 DELDILCRRLYGDREQFKREKER 399
             + +  +     ++       R
Sbjct: 633 KNIQVSHQEFSKMKQSNNEANLR 655

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 32/227 (14%), Positives = 88/227 (38%), Gaps = 6/227 (2%)

Query: 16  EIQKLLDDQRAILDAKQQEFELELEEKRKS-IEEEMRSKISALDQQEFEISHREEKLERR 74
           E  +LLD++ A  +  + +F+   +    + + + +R++ +       +    + +++  
Sbjct: 459 ESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKEC 518

Query: 75  EQALDKKSDRVKEKENDLAARLKSVKERE-KFVKAEEKKLELEKQKLIADKESLQILKVE 133
            Q+       + + E +L A + S    +          L+     L   K+  + L+ +
Sbjct: 519 YQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLEND 578

Query: 134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193
           +  +  +   + L    +   +       +EL R+   L  +++    +QE LLK  +  
Sbjct: 579 LKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVS 638

Query: 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 240
            Q+  K ++     + + +   +  + +A       +L  + +E  K
Sbjct: 639 HQEFSKMKQ----SNNEANLREEVLKNLATAYDNFVELVANLKEGTK 681

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 45.3 bits (106), Expect = 9e-05
 Identities = 34/231 (14%), Positives = 80/231 (34%), Gaps = 11/231 (4%)

Query: 14  QVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSK---ISALDQQEFEISHREEK 70
            +  +     QR   +   +    E    R  +++ +++              I    + 
Sbjct: 473 DLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKP 532

Query: 71  LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQIL 130
                 A+   +     + +++   LKS+      VK E + LE + + +  D  S  + 
Sbjct: 533 EPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLT 592

Query: 131 KVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190
            +  D + +E   + L + E  +       +  E L+ Q  L + I+   HQ+   +K+ 
Sbjct: 593 ALAQDGVINE---EALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQV-SHQEFSKMKQS 648

Query: 191 EDLQQDREKFEKEWE----VLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 237
            +    RE+  K          E    + +  +   +  + L + Q+   +
Sbjct: 649 NNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD 699

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 48.4 bits (114), Expect = 9e-06
 Identities = 37/268 (13%), Positives = 104/268 (38%), Gaps = 9/268 (3%)

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
           RR +       ++K +  +     ++ +E+ +   A  ++ E ++Q+     + L+ ++ 
Sbjct: 293 RRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQ---DRLRQMQE 349

Query: 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 192
           E+++ ++   + +  I    ++L+  +  K EL + Q++L+  ++     + +   E + 
Sbjct: 350 EMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQK 409

Query: 193 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQR 252
           L+ +    ++E   + ++ +  + E  ++ +E +   + Q  A   L         +V  
Sbjct: 410 LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAE 469

Query: 253 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKEL 312
             +       A +A        L+    +    + +          AE   R     K L
Sbjct: 470 RADTDPDHDNASDAGSESGGGDLARGPDDLVDPVAD------RRTLAERNERLHNQLKAL 523

Query: 313 QERTRTFEEKRERVLNDIAHLKEVAEGE 340
           ++      ++ +    D  H + V +G 
Sbjct: 524 KQDLARSCDETKETAMDKIHRENVRQGR 551

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 23/194 (11%), Positives = 65/194 (33%), Gaps = 17/194 (8%)

Query: 41  EKRKSIEEEMRSKISALDQQEFEISHREEKLERR-------EQALDKKSDRVKEKENDLA 93
           +   +      +  SA  +  ++  ++  +L R           +D K+   K+    L 
Sbjct: 77  DDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLE 136

Query: 94  ARLKSVKEREKF-----VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 148
                +K +        V+    +  +E  ++  +       K E ++++ +  +     
Sbjct: 137 NENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSA 196

Query: 149 QEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQEL--LLKEHEDLQQDREKFEKEWEV 206
            E    +K       EL   +S   + +                E +  + E+ + E + 
Sbjct: 197 TES---IKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKK 253

Query: 207 LDEKRDEINKEQEK 220
           +  +  +I K++++
Sbjct: 254 ILNQFLKIKKKRKE 267

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 38/245 (15%), Positives = 104/245 (42%), Gaps = 17/245 (6%)

Query: 13  LQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLE 72
           L  +  +   +   +L    ++ +  L++  +    +M   I +  ++E +I     +  
Sbjct: 64  LDDQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKI-LENAQRF 122

Query: 73  RREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132
            + Q+ + +S  + +K+ +L +++++VK++   ++ E K LE  + +     ++LQ  + 
Sbjct: 123 NQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREH 182

Query: 133 EIDQI-ESENAQQELQIQEECQKLKINEEEKSELLR---------LQSQLKQQIETYRHQ 182
           E + + +S+  Q++L +++    L    +E    +            + +  ++  ++ +
Sbjct: 183 ETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRR 242

Query: 183 QELL---LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQE---KIADEKKKLEKLQHSAE 236
           Q+        +  L Q +  F    E L + R ++ K +E   K   E   + K +    
Sbjct: 243 QQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLW 302

Query: 237 ERLKK 241
           +R   
Sbjct: 303 DRTFS 307

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 182 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241
           Q + L +E E +++ RE+  K  + LD        EQE     KK LE+      E+++K
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKV--MEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 242 EECAMRD-----YVQREIEAI 257
            +   R      Y Q + + I
Sbjct: 134 NKINNRIADKAFYQQPDADII 154

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 291 EMQRMNQEAELLNR-RDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERD 349
           +  R+ QE E + + R++  K LQE     +   +         +E A+ +++E    + 
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE-------WREKAKKDLEEWNQRQS 128

Query: 350 -QLEKEKHEVKVNREKLQEQQ 369
            Q+EK K   ++  +   +Q 
Sbjct: 129 EQVEKNKINNRIADKAFYQQP 149

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 47/301 (15%), Positives = 109/301 (36%), Gaps = 37/301 (12%)

Query: 111  KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS 170
            + L+LE  + IA    +Q  ++  + + +        +      +     E +  L L+ 
Sbjct: 1827 RNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRL-LKR 1885

Query: 171  QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230
            Q +Q   T RH  + +            +      +++EKRD++ +EQ  +    KKL  
Sbjct: 1886 QGRQNYVTPRHYLDFI-----------NQVVL---LINEKRDQLEEEQLHLNIGLKKLR- 1930

Query: 231  LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 290
                 E ++K     ++  + ++   + +  E     +  +Q+V  ++A   ++K   E 
Sbjct: 1931 ---DTEAQVKD----LQVSLAQKNRELDVKNEQANQKL--KQMVQDQQAAEIKQKDAREL 1981

Query: 291  EMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ 350
            ++Q   +  E+  ++ K   +L E+       RE V        E       +       
Sbjct: 1982 QVQLDVRNKEIAVQKVKAYADL-EKAEPTGPLREEVEQLENAANE----LKLKQDEIVAT 2036

Query: 351  LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR-----EQFKREKERFLEFVE 405
            +   +  +   +E+         +   E   +  ++  DR     +    E+ R+ +  E
Sbjct: 2037 ITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV--DRSIALLDNLNSERGRWEQQSE 2094

Query: 406  K 406
             
Sbjct: 2095 N 2095

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 41/299 (13%), Positives = 105/299 (35%), Gaps = 17/299 (5%)

Query: 12   LLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHRE-EK 70
            +L+    + ++        + +   + +  + +    +  S  S  ++++F     E  +
Sbjct: 728  VLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLR 787

Query: 71   LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQIL 130
             E   Q  D+ +     ++ DL+  +   K + +    +EK  EL+  +L AD++     
Sbjct: 788  AENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYR 847

Query: 131  KVEIDQIESENAQQELQIQEEC--------------QKLKINEEEKSELLRLQSQLKQQI 176
                D  + +  ++E + +E+               +  +IN +    L+   ++  +  
Sbjct: 848  SAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGK 907

Query: 177  ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236
                 + + L++     +          +      D++  +   I       ++ Q    
Sbjct: 908  GEMIEEVKRLIRSSLGNRAKEGLVVDFIQ--QTNLDDLPDKASIIDAFFTFAQREQQREA 965

Query: 237  ERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRM 295
            E L KEE    D  +R I      + A E      + +      N + K  ++   Q++
Sbjct: 966  EALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKI 1024

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C* Length = 315

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 7/202 (3%)

Query: 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL 186
           L         ++  +   +       +        K  L       +  +       E+ 
Sbjct: 110 LIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMN 169

Query: 187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAM 246
            +    L+        + E L+ K   +N++  ++  E+    K      +RL+K     
Sbjct: 170 AELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLY 229

Query: 247 RDYVQREIEAIRLDKEAFEAT-------MRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEA 299
           +D +  EI  I  +K  F  T              L      D         ++ + +  
Sbjct: 230 KDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQ 289

Query: 300 ELLNRRDKMEKELQERTRTFEE 321
           E + + +     L    + F  
Sbjct: 290 ENVRKTNNFSAFLANVRKAFTA 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	857
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.33
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.16
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.24
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.57
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.4
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.8
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.63
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.69

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.33  E-value=1e-06  Score=106.91  Aligned_cols=47  Identities=11%  Similarity=0.172  Sum_probs=0.0

Q ss_pred             hHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh
Q 003017          361 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH  407 (857)
Q Consensus       361 ~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl  407 (857)
                      ....++.+..++...+++......+|..++..+..+...+...|+.+
T Consensus      1117 ~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S         1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp             -----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444443334444445444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.16  E-value=4.6e-06  Score=101.31  Aligned_cols=49  Identities=8%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHH
Q 003017          335 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILC  383 (857)
Q Consensus       335 E~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls  383 (857)
                      ..+..+++++..++.....++..+...+..+..+..+++..|++|..-.
T Consensus      1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S         1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3344445555444444444555555566667777777777777776653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.24  E-value=1.1  Score=60.57  Aligned_cols=191  Identities=14%  Similarity=0.283  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 003017           20 LLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV   99 (857)
Q Consensus        20 Lldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~L   99 (857)
                      ||.-+...|..|+.++.........=|+ .|..-...|..-.++|...+-.|.++.++-+..+..+.......+.+-...
T Consensus      1900 li~~y~~ll~~K~~el~~~~~rl~~GL~-KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A         1900 FINQVVLLINEKRDQLEEEQLHLNIGLK-KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666555544433333332 223333444444455555555555555555555555444444444433334


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 003017          100 KEREKFVKAEEKKLELEKQKLIAD----------KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQ  169 (857)
Q Consensus       100 KEkEksLkaeEK~lE~ek~qL~~e----------keel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLq  169 (857)
                      .+.++.+...++++...+...++|          |+.+..+..++.+..+.+.+...+|.+-.++|...+++=.+...=.
T Consensus      1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A         1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444333          2233344444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhH
Q 003017          170 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKR  211 (857)
Q Consensus       170 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR  211 (857)
                      ..|+.+++.|.....--.+=..-|-.||.|....=+.|+...
T Consensus      2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A         2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence            444444444444433333333444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.57  E-value=1.7  Score=44.55  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 003017          174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE  253 (857)
Q Consensus       174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre  253 (857)
                      .||+....+...|.++.-++-...+..+.+++.+....+.+..+                  -+.++.+.++.-..+..+
T Consensus        97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e  158 (256)
T 3na7_A           97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET  158 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555544444444444433333333                  233445555555667777


Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 003017          254 IEAIRLDKEAFEATMRHEQLVLSEKAKN  281 (857)
Q Consensus       254 lE~L~~ekEsF~~~M~hErs~~~ek~q~  281 (857)
                      +..|.-+|+.|...|...=...+++|..
T Consensus       159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          159 QQIIFKKKEDLVEKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            8888888888888888776666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.40  E-value=0.29  Score=59.83  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017          234 SAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK  285 (857)
Q Consensus       234 ~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad  285 (857)
                      +|-..|++..+++...+..+-+.+.   +.+-..|++++..+..-...||+.
T Consensus      1030 ~e~~~L~qq~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A         1030 EQNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555555554544444433   567777777777777777777764

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.04  E-value=3.6  Score=42.13  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------H----hhhHHhHHHHHHHHHHHHHHHHHHHH
Q 003017          172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKE-------W----EVLDEKRDEINKEQEKIADEKKKLEK  230 (857)
Q Consensus       172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~E-------W----E~LDEKR~el~KEa~~I~eEre~lek  230 (857)
                      ++.+|..+......+|...+.++......+..       +    ..+|..-+++.++...+..+|..|..
T Consensus       102 ~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~  171 (256)
T 3na7_A          102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE  171 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555554444444333333       3    23455555556666666666665544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.80  E-value=5.2  Score=54.33  Aligned_cols=62  Identities=15%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q 003017          193 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEK---KKLEKLQHSAEERLKKEECAMRDYVQREI  254 (857)
Q Consensus       193 Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEr---e~lek~~~~E~erLK~Ek~~~r~~~krel  254 (857)
                      |.+..+....+++..-.+++.|+.+++....-=   ++|-.=+.+|..|=...-..+..++..=.
T Consensus      2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2040 LEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence            333333333333444444444444444332211   12333355677776666666666655533

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.55  E-value=1.6  Score=53.55  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH
Q 003017          171 QLKQQIETYRHQQELLLKEHEDLQ  194 (857)
Q Consensus       171 eLKeEId~~R~Qke~LlkEae~Lk  194 (857)
                      .|.+.|..+..+...|....|+|.
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.57  E-value=0.69  Score=51.28  Aligned_cols=18  Identities=22%  Similarity=0.285  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 003017          171 QLKQQIETYRHQQELLLK  188 (857)
Q Consensus       171 eLKeEId~~R~Qke~Llk  188 (857)
                      +||+|+...+.+...|+.
T Consensus       562 ~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          562 ELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.63  E-value=2.7  Score=46.56  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003017          125 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR  197 (857)
Q Consensus       125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK  197 (857)
                      .++..++.++....+.+.....+|....+.+.+.+++..+.   ...|++++.+.+.....+..+...++++.
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  532 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---SDNLNKVFTHLKERQAFKLRETQARRTEA  532 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---HHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence            56666666666667777777777777777777655543332   24455555555555555544444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.33  E-value=23  Score=35.78  Aligned_cols=84  Identities=20%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003017          113 LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS-ELLRLQSQLKQQIETYRHQQELLLKEHE  191 (857)
Q Consensus       113 lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~-E~lrLqseLKeEId~~R~Qke~LlkEae  191 (857)
                      |+.+..+|...++.+....-+||..-+.++.+.+.+..-.+.+...=+.=- ...-|+++|.+ =+.++..-+-|.-|+-
T Consensus        93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~r  171 (189)
T 2v71_A           93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEAR  171 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555444443333333222211111 12334555542 3344444445555666


Q ss_pred             HHHHHH
Q 003017          192 DLQQDR  197 (857)
Q Consensus       192 ~Lk~eK  197 (857)
                      +||++-
T Consensus       172 DLk~El  177 (189)
T 2v71_A          172 DLRQEL  177 (189)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.69  E-value=16  Score=39.86  Aligned_cols=9  Identities=11%  Similarity=0.759  Sum_probs=3.6

Q ss_pred             HHHHHHHHh
Q 003017          197 REKFEKEWE  205 (857)
Q Consensus       197 KekFE~EWE  205 (857)
                      +++|..+|+
T Consensus       430 ~~~~~~~~~  438 (487)
T 3oja_A          430 QNNAIRDWD  438 (487)
T ss_dssp             HHHHHHHHH
T ss_pred             hhcchhhhh
Confidence            333444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00