Citrus Sinensis ID: 003047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 854 | 2.2.26 [Sep-21-2011] | |||||||
| A4IFB6 | 743 | CCR4-NOT transcription co | yes | no | 0.530 | 0.609 | 0.292 | 7e-42 | |
| Q9H9A5 | 744 | CCR4-NOT transcription co | yes | no | 0.542 | 0.622 | 0.292 | 1e-41 | |
| Q6NU53 | 748 | CCR4-NOT transcription co | N/A | no | 0.551 | 0.629 | 0.290 | 2e-41 | |
| Q08CL8 | 624 | CCR4-NOT transcription co | yes | no | 0.555 | 0.759 | 0.293 | 6e-41 | |
| Q5XIA4 | 744 | CCR4-NOT transcription co | yes | no | 0.785 | 0.901 | 0.254 | 8e-41 | |
| Q5ZIW2 | 744 | CCR4-NOT transcription co | yes | no | 0.551 | 0.633 | 0.289 | 8e-41 | |
| Q4R350 | 744 | CCR4-NOT transcription co | N/A | no | 0.542 | 0.622 | 0.290 | 1e-40 | |
| Q8BH15 | 744 | CCR4-NOT transcription co | yes | no | 0.542 | 0.622 | 0.288 | 4e-40 | |
| Q6DE97 | 748 | CCR4-NOT transcription co | N/A | no | 0.539 | 0.616 | 0.292 | 4e-40 | |
| Q9V3G6 | 635 | CCR4-NOT transcription co | yes | no | 0.368 | 0.496 | 0.248 | 7e-17 |
| >sp|A4IFB6|CNOTA_BOVIN CCR4-NOT transcription complex subunit 10 OS=Bos taurus GN=CNOT10 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 257/554 (46%), Gaps = 101/554 (18%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ ++ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------DQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC-------- 647
SKN N LG +G++ D +S S+ D C
Sbjct: 485 SKNSNQ-------------LGGNAESGESSD---------ACSSKSHDGDKCIPAPPSSP 522
Query: 648 --RRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALC 705
++E + +K ++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL
Sbjct: 523 LRKQELENLKCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALI 582
Query: 706 LLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDS 765
L+R +A H + + L S + +Q + + E +G A PS S
Sbjct: 583 SLDRISDAITHLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVSS 640
Query: 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVD 822
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++
Sbjct: 641 ----------ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLE 690
Query: 823 LMLGKSQEALAKLK 836
L G +Q AL +K
Sbjct: 691 LQNGNTQLALQIIK 704
|
Bos taurus (taxid: 9913) |
| >sp|Q9H9A5|CNOTA_HUMAN CCR4-NOT transcription complex subunit 10 OS=Homo sapiens GN=CNOT10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 257/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
+KN N ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 AKNSNQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QIIK 704
|
Homo sapiens (taxid: 9606) |
| >sp|Q6NU53|CNOAB_XENLA CCR4-NOT transcription complex subunit 10-B OS=Xenopus laevis GN=cnot10-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 161/554 (29%), Positives = 255/554 (46%), Gaps = 83/554 (14%)
Query: 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR 370
D ++ K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R
Sbjct: 209 DGGVNVEAAKSKIHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLR 266
Query: 371 RNHRKAIKLLLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL-- 420
N+RKA+KLL + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 267 GNYRKAVKLLNS-SNIAEYPGFMKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALHE 325
Query: 421 ----------SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470
NS +K + T +K + YNCG+Q L G+P+ A ++
Sbjct: 326 NDNACAQLPSENSDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFEYLVEAV 385
Query: 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530
V++ P LWLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 386 QVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSVQN 445
Query: 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590
+ E S P SM A CL NAL LL P + + E+
Sbjct: 446 LLYNDGE-------SSAIPVASMEFAAICLRNALLLL------------PEDQLETKQEN 486
Query: 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650
ASS+ +N S G+ + K+ +G + +S + R+E
Sbjct: 487 GSKASSQTVNTDSS-----------GESSDVCSNKNHEGDKFIPAPPSS-----PLRRQE 530
Query: 651 NQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRP 710
+ ++ ++LA +AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R
Sbjct: 531 VENLRCSVLACIAYVALALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYAAEALISLDRI 590
Query: 711 KEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMF 770
+A H + + L S + EQ G +N P +S
Sbjct: 591 SDAITHLNP--ENVTDVSLGVSSNEQEQ--------------GSDKGEN-EPMESAGKQI 633
Query: 771 PK--PE---EARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVD 822
P+ P AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++
Sbjct: 634 PQCYPSSVTSARTMMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEIPPEAILLAVYLE 693
Query: 823 LMLGKSQEALAKLK 836
L G +Q AL +K
Sbjct: 694 LQNGNTQLALQIIK 707
|
Xenopus laevis (taxid: 8355) |
| >sp|Q08CL8|CNOTA_DANRE CCR4-NOT transcription complex subunit 10 OS=Danio rerio GN=cnot10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 162/552 (29%), Positives = 251/552 (45%), Gaps = 78/552 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R N+RKA+KL
Sbjct: 89 KSKMHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLRGNYRKAVKL 146
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL----------- 420
L + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 147 LNS-SNIAEHPGPLKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALQENDHTCAQIG 205
Query: 421 --SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478
SN+ + +K + + +K + YNCG+Q L G+P+ A C ++ V++ P
Sbjct: 206 DGSNAQASKKFSGIPMCALLANKRYELLYNCGIQLLHIGRPLAAFECLMEAVQVYHSNPR 265
Query: 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEK 538
LWLRLAECC+ A + + L + V+G+G R +V+ +N
Sbjct: 266 LWLRLAECCITANKGSSEQETKGLPSKKGIVQAVVGQGYHRKIVLASQSTQNTIY----- 320
Query: 539 DDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKN 598
S S P SM A CL NAL LL + SK P N S S+S S
Sbjct: 321 --SEAQSAAIPVASMEFAAICLRNALLLLPEHQQHDSK---PDNGSKSYSQSGGTES--- 372
Query: 599 LNHKSLSSLDSKISVGLGQVTANG-DAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQA 657
G T++ K Q+G + +S + ++E + ++ +
Sbjct: 373 -----------------GSETSDACSGKTQEGDKFIPAAPSS-----PLRKQEVENLRCS 410
Query: 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717
+LA AYV L + + + AL A LL S FLGH+YAAEAL L+ +A H
Sbjct: 411 ILACSAYVALALGDNLMALNHAEKLLHQAKLSGSLKFLGHLYAAEALISLDGISDAIAHL 470
Query: 718 SMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEAR 777
+ + L S + +Q + ++ E +G PS S AR
Sbjct: 471 NP--ENVTDVSLGVSSSEQDQGSDKGDLEPVESSGKQTPLCYPSSVSS----------AR 518
Query: 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS---TEATLTAIYVDLMLGKSQEALAK 834
T+ N+ + + ++ E+E+A + QA S++ EA L +Y++L G +Q AL
Sbjct: 519 ATMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQI 578
Query: 835 LKYCNHVRFLPS 846
+K + LPS
Sbjct: 579 IK---RNQLLPS 587
|
Danio rerio (taxid: 7955) |
| >sp|Q5XIA4|CNOTA_RAT CCR4-NOT transcription complex subunit 10 OS=Rattus norvegicus GN=Cnot10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 211/829 (25%), Positives = 350/829 (42%), Gaps = 158/829 (19%)
Query: 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP 80
SGV L+ A F S +D CL L L D DD KI+ N A+AE+F++ T
Sbjct: 21 SGVTDQEKELSTSAFQAFTSGNYDACLQHLACLQDINKDDYKIILNTAVAEFFKNNQTTT 80
Query: 81 KKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYM 140
L + LN +KN+ + E+ +G +
Sbjct: 81 DNLRQTLNQLKNQ----VHSAVEEMDG--------------------------------L 104
Query: 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHD 200
D+ + S+ N AVI +HL ++ +A++V E LYQ IEP +E A +C LL+D+ + H
Sbjct: 105 DDVENSMLYYNQAVILYHLRQHTEAIAVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQ 164
Query: 201 AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASN--SDLAA 258
A ++ +L LEK S G N+ G N+S+ D SN ++ AA
Sbjct: 165 AEKALHLLAVLEKMISQGSGNKNGKSETG---------------NNSSKDGSNPKAESAA 209
Query: 259 TVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVD 318
+ A+++ + + ++ G + + E+ + S
Sbjct: 210 LIEAAKSKIHQ-----------------YKVRGYIQMKSLKACKREIKSVMNTAGNSAPS 252
Query: 319 LKLKLQLYKVRFLLLTRNLKHAKREVKL--AMNIARGKDSSLALFLKSQ--LEYARRNHR 374
L L K F L N + A VKL + NIA F+K+ L N+
Sbjct: 253 LFL-----KSNFEYLRGNYRKA---VKLLNSSNIAEHPG-----FMKTGECLRCMFWNNL 299
Query: 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434
I ++ N +GI Y++ A +V + N+ +K +
Sbjct: 300 GCIHFAMSKHN---LGI----------FYFKKALQENDNVCAQLSAGNTDPGKKFSGRPM 346
Query: 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKG 494
T +K + YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A +
Sbjct: 347 CTLLANKRYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANKGT 406
Query: 495 LVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ----PK 550
+ L + ++G+G R +V+ +N ++ +DGQ P
Sbjct: 407 SEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQN-----------TVYNDGQSSAIPV 455
Query: 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610
S+ A CL NAL LL P+ E+ + + SK+ + ++ S+
Sbjct: 456 ASVEFAAICLRNALLLL--PE--------------EQQDPKQENGSKSSSQLGGNAESSE 499
Query: 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEME 670
S + +GD ++I S + ++E + +K ++LA AYV L +
Sbjct: 500 SSETCSSKSHDGD----------KLIPAPPS--SPLRKQELENLKCSILACSAYVALALG 547
Query: 671 NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLP 730
+ + AL A LL+ P S FLGH+YAAEAL L+R +A H + + L
Sbjct: 548 DNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNP--ENVTDVSLG 605
Query: 731 FSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM 790
S + +Q + + E +G A PS +S AR + N+ + + +
Sbjct: 606 ISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS----------ARTVMLFNLGSAYCL 655
Query: 791 QGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEALAKLK 836
+ E+++A + QA S++ P+ EA L A+Y++L G +Q AL +K
Sbjct: 656 RSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIK 704
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q5ZIW2|CNOTA_CHICK CCR4-NOT transcription complex subunit 10 OS=Gallus gallus GN=CNOT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 163/563 (28%), Positives = 256/563 (45%), Gaps = 92/563 (16%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSNRTEMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS----------- 421
L + + G + MF NNLGCI++ + K++ + KAL
Sbjct: 273 LNSANIAEHPGFMKTGECLRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDNACAQLGT 332
Query: 422 -NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480
+S +K + T +K + YNCG+Q L G+P+ A C ++ V++ P LW
Sbjct: 333 GSSDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHSNPRLW 392
Query: 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540
LR+AECC+ A + + L + ++G+G R +V+ +N
Sbjct: 393 LRIAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN---------- 442
Query: 541 SSLGSDGQ----PKLSMPLARQCLLNALHLL--NYPDLNYSKFGLPSNS---SVEESESS 591
+ +DGQ P SM A CL NAL LL + + P+N + E SESS
Sbjct: 443 -VVYNDGQSSAIPVASMEFAAICLRNALLLLPEDQQEPKQENGSKPNNQLGGNTENSESS 501
Query: 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRREN 651
E S+K+ H+ + + S L ++E
Sbjct: 502 EACSNKS--HEGDKFIAAPPSSPLK-------------------------------KQEL 528
Query: 652 QMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPK 711
+ ++ ++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R
Sbjct: 529 ENLRCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRIS 588
Query: 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFP 771
+A H + + L S + +Q + + E +G PS S
Sbjct: 589 DAITHLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKQTPQCYPSSVTS------ 640
Query: 772 KPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKS 828
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +
Sbjct: 641 ----ARTMMLFNLGSAYCLRSEYDKARKCLHQAASLIHPKEIPPEAILLAVYLELQNGNT 696
Query: 829 QEALAKLKYCNHVRFLPSGLQLS 851
Q AL +K + LPS LS
Sbjct: 697 QLALQIIK---RNQLLPSVKTLS 716
|
Gallus gallus (taxid: 9031) |
| >sp|Q4R350|CNOTA_MACFA CCR4-NOT transcription complex subunit 10 OS=Macaca fascicularis GN=CNOT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 256/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ Y VR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYIVRAYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGSTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P SM A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASMEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
+KN N ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 AKNSNQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QIIK 704
|
Macaca fascicularis (taxid: 9541) |
| >sp|Q8BH15|CNOTA_MOUSE CCR4-NOT transcription complex subunit 10 OS=Mus musculus GN=Cnot10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 157/544 (28%), Positives = 257/544 (47%), Gaps = 81/544 (14%)
Query: 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379
K K+ YKVR + ++LK KRE+K MN A +S+ +LFLKS EY R N+RKA+KL
Sbjct: 215 KSKIHQYKVRGYIQMKSLKACKREIKSVMNTA--GNSAPSLFLKSNFEYLRGNYRKAVKL 272
Query: 380 LLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL----- 426
L + SN +T + MF NNLGCI++ ++K++ + KAL + ++
Sbjct: 273 LNS-SNIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLS 331
Query: 427 -------RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479
+K + T +K + YNCG+Q L G+P+ A C ++ V++ P L
Sbjct: 332 AGGTDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHVGRPLAAFECLIEAVQVYHANPRL 391
Query: 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKD 539
WLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 392 WLRLAECCIAANKGTSEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQN--------- 442
Query: 540 DSSLGSDGQ----PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
++ +DGQ P S+ A CL NAL LL P+ E+ + +
Sbjct: 443 --TVYNDGQSSAIPVASVEFAAICLRNALLLL--PE--------------EQQDPKQENG 484
Query: 596 SKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655
SK+ + ++ S+ S + +GD +S + ++E + +K
Sbjct: 485 SKSSSQLGGNTESSESSETCSSKSHDGDKFIPAPPSS------------PLRKQELENLK 532
Query: 656 QALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
++LA AYV L + + + AL A LL+ P S FLGH+YAAEAL L+R +A
Sbjct: 533 CSILACSAYVALALGDNLMALNHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAIT 592
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEE 775
H + + L S + +Q + + E +G A PS +S
Sbjct: 593 HLNP--ENVTDVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNS---------- 640
Query: 776 ARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST--EATLTAIYVDLMLGKSQEAL 832
AR + N+ + + ++ E+++A + QA S++ P+ EA L A+Y++L G +Q AL
Sbjct: 641 ARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLAL 700
Query: 833 AKLK 836
+K
Sbjct: 701 QMIK 704
|
Mus musculus (taxid: 10090) |
| >sp|Q6DE97|CNOAA_XENLA CCR4-NOT transcription complex subunit 10-A OS=Xenopus laevis GN=cnot10-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 165/564 (29%), Positives = 253/564 (44%), Gaps = 103/564 (18%)
Query: 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR 370
D + K K+ YKVR + ++LK KRE+K MN + +S+ +LFLKS EY R
Sbjct: 209 DGGVHVEAAKSKIHQYKVRAYIQMKSLKACKREIKSVMNTS--GNSAPSLFLKSNFEYLR 266
Query: 371 RNHRKAIKLLLALSN--------RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL-- 420
N+RKA+KLL + SN +T + MF NNLGCI++ + K++ + KAL
Sbjct: 267 GNYRKAVKLLNS-SNIAEYPGFMKTGECVRCMFWNNLGCIHFAMGKHNLGLFYFKKALQE 325
Query: 421 ----------SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470
SN+ +K + T +K + YNCG+Q L G+P+ A ++
Sbjct: 326 NDNTCAQLPSSNTDPGKKFSSRPMCTLLTNKRYELLYNCGIQLLHIGRPLAAFEYLIEAV 385
Query: 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530
V++ P LWLRLAECC+ A + + L + ++G+G R +V+ +N
Sbjct: 386 QVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSVQN 445
Query: 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590
+ E S P SM A CL NAL L LP + + E+
Sbjct: 446 LLYNDGE-------SSAIPVASMEFAAICLRNALLL------------LPEDQFDAKQEN 486
Query: 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYED----- 645
SS+ T N D+ GG S EV N S+ D
Sbjct: 487 GSKTSSQ---------------------TGNTDS----GGESSEVCSNK-SHEGDKFIPA 520
Query: 646 -----VCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYA 700
+ R+E + ++ ++LA AYV L + + + AL A LL+ P S FLGH+YA
Sbjct: 521 PPSSPLKRQEVENLRCSVLACSAYVGLALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYA 580
Query: 701 AEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNP 760
AEAL L+R +A H + P + D V + E G +N
Sbjct: 581 AEALISLDRISDAITHLN-----------PENVTD-----VSLGVSSNEQEQGSDKGEN- 623
Query: 761 SPEDSRDTMFPK--PE---EARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRST-- 812
P +S P+ P AR + N+ + + ++ E+++A + QA S++ P+
Sbjct: 624 EPMESVGKQMPQCYPSSVTSARTMMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEIPP 683
Query: 813 EATLTAIYVDLMLGKSQEALAKLK 836
EA L A+Y++L G +Q AL +K
Sbjct: 684 EAILLAVYLELQNGNTQLALQIIK 707
|
Xenopus laevis (taxid: 8355) |
| >sp|Q9V3G6|CNOTA_DROME CCR4-NOT transcription complex subunit 10 homolog OS=Drosophila melanogaster GN=CG18616 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 161/391 (41%), Gaps = 76/391 (19%)
Query: 362 LKSQLEYARRNHRKAIKLLLALSNR-TEMG-----ISSMFNNNLGCIYYQLAKYHTSSVF 415
LK+Q Y ++ + A K L+ ++N T+ G +S+ NN+G I+ ++ Y ++ F
Sbjct: 253 LKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQLSTCIANNMGVIHLRVRHYAIAAKF 312
Query: 416 LSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474
AL+ L ++ + L T S +S I YN G+ L +P A +CF F+
Sbjct: 313 FQNALNFDQQLARNLRQSTLQTMSSARSCEILYNLGVAMLHLRRPKEAFQCFLVPVKQFH 372
Query: 475 KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVD 534
P LWLR+AE C+M E LV R +
Sbjct: 373 SNPRLWLRMAEACIMEHEAKLVEEER-----------------------------QSQSE 403
Query: 535 SPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGA 594
+P + S G P+ ++ A CL +AL L + ++F + + S SE E
Sbjct: 404 TPSTKPYAPQSAGVPEPTLEFAVLCLRSALTLTQH---YKTRFHMAAVS----SEDVEAP 456
Query: 595 SSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMI 654
K+ +S + + + SLE ++N ++
Sbjct: 457 EPKDPTQESWRH------------PQDNNFCNPSKPVSLESLENMMA------------- 491
Query: 655 KQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAA 714
A+ A ++V L + + V AL + LL S + LGH+YA EAL L+++ EA
Sbjct: 492 --AIYAAHSFVSLRLGDHVTALEMSEKLLACERLSDAHKLLGHMYAGEALMLMDKASEAR 549
Query: 715 EHFSMYLSGGDN-FDLPFSGEDCEQWRVEKI 744
+H G N FD F D W+++ +
Sbjct: 550 DHLDPTFVGTLNAFD--FETRD---WQLKSV 575
|
Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 854 | ||||||
| 225445605 | 857 | PREDICTED: CCR4-NOT transcription comple | 0.992 | 0.989 | 0.693 | 0.0 | |
| 297739003 | 812 | unnamed protein product [Vitis vinifera] | 0.946 | 0.995 | 0.669 | 0.0 | |
| 356548500 | 859 | PREDICTED: CCR4-NOT transcription comple | 0.988 | 0.982 | 0.665 | 0.0 | |
| 224144137 | 841 | predicted protein [Populus trichocarpa] | 0.968 | 0.983 | 0.671 | 0.0 | |
| 356562973 | 857 | PREDICTED: CCR4-NOT transcription comple | 0.990 | 0.987 | 0.666 | 0.0 | |
| 255582329 | 851 | conserved hypothetical protein [Ricinus | 0.946 | 0.949 | 0.681 | 0.0 | |
| 224090340 | 829 | predicted protein [Populus trichocarpa] | 0.954 | 0.983 | 0.661 | 0.0 | |
| 357478239 | 881 | CCR4-NOT transcription complex subunit 1 | 0.968 | 0.938 | 0.648 | 0.0 | |
| 449464972 | 853 | PREDICTED: CCR4-NOT transcription comple | 0.984 | 0.985 | 0.633 | 0.0 | |
| 449528964 | 776 | PREDICTED: CCR4-NOT transcription comple | 0.880 | 0.969 | 0.633 | 0.0 |
| >gi|225445605|ref|XP_002282408.1| PREDICTED: CCR4-NOT transcription complex subunit 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/861 (69%), Positives = 705/861 (81%), Gaps = 13/861 (1%)
Query: 1 MDSRDSTQSTAA--GNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKP 58
MDSRD++ S+AA S +DD+G LSV A+LAK+AAL FQSRKF ECLD+L QLL KK
Sbjct: 1 MDSRDTSLSSAATRDGASPDDDAG-LSVAASLAKDAALLFQSRKFSECLDVLNQLLQKKE 59
Query: 59 DDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLG 118
DDPK+LHNIAIAEYFRDGC+DPKKLLE LNNVK +SEELA A+GE E N+G+KVG
Sbjct: 60 DDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKKRSEELAHASGENAEAATNLGNKVG-- 117
Query: 119 SKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP 178
SKG+ + Q SAA+SGS+VY DEFD SVA LN+A++WFHLHEY KALSVLE LYQNIEP
Sbjct: 118 SKGTNTMALQFSAASSGSMVYTDEFDTSVATLNLAIVWFHLHEYGKALSVLESLYQNIEP 177
Query: 179 IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVG-CVNQVDSGSMGQQ-STNLL 236
IDETTAL ICLLLLDVALA HD R A+++ YLEKAF VG +Q D+ S QQ S+NL+
Sbjct: 178 IDETTALHICLLLLDVALASHDVSRCAEIINYLEKAFCVGYTASQGDNVSTAQQQSSNLV 237
Query: 237 AKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTR 296
K SS+PSNS+ DASNSD A++N+SEN LSRTLSEETL+ +T+ S+L+I GQNLTR
Sbjct: 238 VKSSSIPSNSTVPDASNSDSVASLNSSENPLSRTLSEETLDYETMF--SALDIGGQNLTR 295
Query: 297 PVGLSS-NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD 355
P GL S N+LSR DRSI TVDLKLKLQLYKVR LLLTRNLK AKREVK AMNIARG+D
Sbjct: 296 PAGLPSLNDLSRAPADRSIPTVDLKLKLQLYKVRILLLTRNLKAAKREVKQAMNIARGRD 355
Query: 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVF 415
SS+AL LKS+LEYAR NHRKAIKLL+A SN++EMGISS+FNNNLGCI+YQL K+HTS++F
Sbjct: 356 SSMALLLKSELEYARGNHRKAIKLLMASSNQSEMGISSIFNNNLGCIHYQLGKHHTSTIF 415
Query: 416 LSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475
SKALS S+SL+K+K KL +FSQDKSLLI YNCG+QYLACGKP+LAARCFQK+SLVFY
Sbjct: 416 FSKALSGSSSLKKEKTPKLSSFSQDKSLLIIYNCGVQYLACGKPILAARCFQKASLVFYN 475
Query: 476 QPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDS 535
PLLWLR+AECCLMALEKG++ S SD SEV++HVIGKGKWR LV+E+G +NGH +S
Sbjct: 476 SPLLWLRIAECCLMALEKGVLESSGSPSDRSEVRIHVIGKGKWRQLVLENGISRNGHANS 535
Query: 536 PEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGAS 595
EK D LG D QPKLSM LARQCLLNALHLL+ ++KFGL S S+++E+ESSE S
Sbjct: 536 VEKGDWLLGDDRQPKLSMSLARQCLLNALHLLDCSASKFAKFGLSSESTLQENESSEVVS 595
Query: 596 SKNLNHKSLSSLDSK---ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652
+KN NHK+L+ DSK I+VGLGQV ANGDAK+QKGG SL ++Q+S++ YED+CRRENQ
Sbjct: 596 AKNSNHKNLAGSDSKASNITVGLGQVNANGDAKEQKGGPSLTILQSSIAVYEDICRRENQ 655
Query: 653 MIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKE 712
MIKQA LANLAYVELE++NP+KAL+ A SLL+LPDCSRI+ FLGH+YAAEALCLLNRPKE
Sbjct: 656 MIKQATLANLAYVELELQNPLKALSTAWSLLKLPDCSRIFTFLGHVYAAEALCLLNRPKE 715
Query: 713 AAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPK 772
A++H S YLSGG+N +LP+S ED EQWR EK +DCEE+NGG KNPS ED + F K
Sbjct: 716 ASDHLSTYLSGGNNVELPYSEEDREQWRAEKTMDCEEVNGGSLTGKNPSLEDLQGITFLK 775
Query: 773 PEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEAL 832
PEEARGTLY N+A M AMQGE E+A FV QALSI+P S+E LTA+YVDL+ GK+QEAL
Sbjct: 776 PEEARGTLYANLATMSAMQGELEQARQFVKQALSIIPNSSEVILTAVYVDLVHGKTQEAL 835
Query: 833 AKLKYCNHVRFLPSGLQLSKS 853
AKLK C+HVRFL S QL+ S
Sbjct: 836 AKLKQCSHVRFLASSSQLTCS 856
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739003|emb|CBI28248.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/856 (66%), Positives = 673/856 (78%), Gaps = 48/856 (5%)
Query: 1 MDSRDSTQSTAA--GNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKP 58
MDSRD++ S+AA S +DD+G LSV A+LAK+AAL FQSRKF ECLD+L QLL KK
Sbjct: 1 MDSRDTSLSSAATRDGASPDDDAG-LSVAASLAKDAALLFQSRKFSECLDVLNQLLQKKE 59
Query: 59 DDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLG 118
DDPK+LHNIAIAEYFRDGC+DPKKLLE LNNVK +SEELA A+GE E N+G+KVG
Sbjct: 60 DDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKKRSEELAHASGENAEAATNLGNKVG-- 117
Query: 119 SKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP 178
SKG+ + Q SAA+SGS+VY DEFD SVA LN+A++WFHLHEY KALSVLE LYQNIEP
Sbjct: 118 SKGTNTMALQFSAASSGSMVYTDEFDTSVATLNLAIVWFHLHEYGKALSVLESLYQNIEP 177
Query: 179 IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAK 238
IDETTAL ICLLLLDVALA HD R A+++ YLEKAF VG K
Sbjct: 178 IDETTALHICLLLLDVALASHDVSRCAEIINYLEKAFCVGYT---------------AIK 222
Query: 239 YSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPV 298
SS+PSNS+ DASNSD A++N+SEN LSRTLSEETL+ +T+ S+L+I GQNLTRP
Sbjct: 223 SSSIPSNSTVPDASNSDSVASLNSSENPLSRTLSEETLDYETMF--SALDIGGQNLTRPA 280
Query: 299 GLSS-NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS 357
GL S N+LSR DRSI TVDLKLKLQLYKVR LLLTRNLK AKREVK AMNIARG+DSS
Sbjct: 281 GLPSLNDLSRAPADRSIPTVDLKLKLQLYKVRILLLTRNLKAAKREVKQAMNIARGRDSS 340
Query: 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLS 417
+AL LKS+LEYAR NHRKAIKLL+A SN++EMGISS+FNNNLGCI+YQL K+HTS++F S
Sbjct: 341 MALLLKSELEYARGNHRKAIKLLMASSNQSEMGISSIFNNNLGCIHYQLGKHHTSTIFFS 400
Query: 418 KALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477
KALS S+SL+K+K KL +FSQDKSLLI YNCG+QYLACGKP+LAARCFQK+SLVFY P
Sbjct: 401 KALSGSSSLKKEKTPKLSSFSQDKSLLIIYNCGVQYLACGKPILAARCFQKASLVFYNSP 460
Query: 478 LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPE 537
LLWLR+AECCLMALEKG++ S SD SEV++HVIGKGKWR LV+E+G +NGH +S E
Sbjct: 461 LLWLRIAECCLMALEKGVLESSGSPSDRSEVRIHVIGKGKWRQLVLENGISRNGHANSVE 520
Query: 538 KDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597
K D LG D QPKLSM LARQCLLNALHLL+ ++KFGL S S+++E+ESSE
Sbjct: 521 KGDWLLGDDRQPKLSMSLARQCLLNALHLLDCSASKFAKFGLSSESTLQENESSE----- 575
Query: 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQA 657
V ANGDAK+QKGG SL ++Q+S++ YED+CRRENQMIKQA
Sbjct: 576 --------------------VNANGDAKEQKGGPSLTILQSSIAVYEDICRRENQMIKQA 615
Query: 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717
LANLAYVELE++NP+KAL+ A SLL+LPDCSRI+ FLGH+YAAEALCLLNRPKEA++H
Sbjct: 616 TLANLAYVELELQNPLKALSTAWSLLKLPDCSRIFTFLGHVYAAEALCLLNRPKEASDHL 675
Query: 718 SMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEAR 777
S YLSGG+N +LP+S ED EQWR EK +DCEE+NGG KNPS ED + F KPEEAR
Sbjct: 676 STYLSGGNNVELPYSEEDREQWRAEKTMDCEEVNGGSLTGKNPSLEDLQGITFLKPEEAR 735
Query: 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837
GTLY N+A M AMQGE E+A FV QALSI+P S+E LTA+YVDL+ GK+QEALAKLK
Sbjct: 736 GTLYANLATMSAMQGELEQARQFVKQALSIIPNSSEVILTAVYVDLVHGKTQEALAKLKQ 795
Query: 838 CNHVRFLPSGLQLSKS 853
C+HVRFL S QL+ S
Sbjct: 796 CSHVRFLASSSQLTCS 811
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548500|ref|XP_003542639.1| PREDICTED: CCR4-NOT transcription complex subunit 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/867 (66%), Positives = 678/867 (78%), Gaps = 23/867 (2%)
Query: 1 MDSRD--------STQSTAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQ 52
M+SRD +T A+ T ED GV +V LAK+AAL+FQS KF EC+++L Q
Sbjct: 1 MESRDLPSSSPSSTTNRDASFATDAED--GVFTVVVALAKDAALHFQSGKFAECVEVLNQ 58
Query: 53 LLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIG 112
LL KK DDPK+LHNIAIAE+FRDGC+DPKKLLE +N +K K++ELA EQ E N+G
Sbjct: 59 LLQKKQDDPKVLHNIAIAEFFRDGCSDPKKLLEVINGIKRKNDELALVLEEQGESVNNVG 118
Query: 113 SKVGLGSKGSGVVGNQVSAANSGSL--VYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170
+KV LGSKGS +Q S ANS S +Y DEFD SVA LNIA+IWFHLH+YAK LSVLE
Sbjct: 119 NKV-LGSKGSNASAHQFSGANSTSTSTMYTDEFDSSVAMLNIAIIWFHLHDYAKTLSVLE 177
Query: 171 PLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQ 230
PL+QNIEPIDETTAL ICLLLLD +LACHDA +SADVL YLEKAF V V+Q DSG+ Q
Sbjct: 178 PLFQNIEPIDETTALHICLLLLDASLACHDASKSADVLTYLEKAFGVSSVSQGDSGNTAQ 237
Query: 231 Q-STNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEI 289
Q + NL+ K V SN S ADAS+SDL + N SEN LSR LSE+TL+ + ++ L++
Sbjct: 238 QQAANLITKSVPVASNVSAADASSSDLGPSANVSENHLSRDLSEDTLDYEAMI----LDM 293
Query: 290 SGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349
GQNL RP+G SSN+LSR LVDR STVDLKLKLQLYKVRFLLLTRNLK AKREVKLAMN
Sbjct: 294 GGQNLARPMGPSSNDLSRALVDR-FSTVDLKLKLQLYKVRFLLLTRNLKLAKREVKLAMN 352
Query: 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409
IARG+DSS+AL LKSQLEYAR NHRKA+KLL+A +NRT+ SS+FNNNLGCIYYQL KY
Sbjct: 353 IARGRDSSMALLLKSQLEYARGNHRKAVKLLMASNNRTDTAFSSIFNNNLGCIYYQLGKY 412
Query: 410 HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469
TSS+F SKAL+N +SLRKD+ LKL TFSQD SLLI YNCG+QYLACGKP+LAARCFQK+
Sbjct: 413 QTSSLFFSKALTNCSSLRKDQSLKLATFSQDNSLLIIYNCGVQYLACGKPILAARCFQKA 472
Query: 470 SLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRK 529
SLVFYKQPLLWLRL+ECCLMALEKGL+ R S+ V V V+G GKWR LV+ED
Sbjct: 473 SLVFYKQPLLWLRLSECCLMALEKGLIKSSRVPSEKLGVGVCVVGIGKWRQLVVEDQISG 532
Query: 530 NGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESE 589
NG VDS E DD DG+ KLSM LARQCLLNALHLL+ N K GLPSNSSVE++
Sbjct: 533 NGLVDSSEGDDCP-SEDGRLKLSMSLARQCLLNALHLLDSNSANCLKSGLPSNSSVEDNN 591
Query: 590 SSEGASSKNLNHKSLSSLDSK---ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDV 646
SE + SKN N K+ +DSK ++VGLGQV ANGD K+QKG S E++QNSLS YE+V
Sbjct: 592 GSEVSPSKNSNIKNSHGIDSKAFSVAVGLGQVNANGDTKEQKGVNSQELVQNSLSCYENV 651
Query: 647 CRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCL 706
RENQ++KQA+LANLAYVELE++NPVKAL+ A+SLLELP+CSRIYIFLGH+YAAEALCL
Sbjct: 652 RNRENQLVKQAVLANLAYVELELDNPVKALSVAKSLLELPECSRIYIFLGHVYAAEALCL 711
Query: 707 LNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSR 766
+NRPKEAAEH S YLSGG+N DLPFS EDCE+W+ E+ D EE+NGG AAKN S E ++
Sbjct: 712 MNRPKEAAEHLSFYLSGGNNVDLPFSLEDCEKWQPERTADFEEVNGGSTAAKNSSLEGTQ 771
Query: 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLG 826
+F KPEEAR T+Y N A M AMQGEFE+++ V QALS+LP S EATLTA+YVDL+LG
Sbjct: 772 SIVFLKPEEARATIYANFAVMSAMQGEFEKSNILVAQALSLLPNSPEATLTAVYVDLLLG 831
Query: 827 KSQEALAKLKYCNHVRFLPSGLQLSKS 853
K QEAL KLK C+ +RFLPSG+ L+KS
Sbjct: 832 KPQEALTKLKRCSRIRFLPSGITLNKS 858
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144137|ref|XP_002325199.1| predicted protein [Populus trichocarpa] gi|222866633|gb|EEF03764.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/865 (67%), Positives = 686/865 (79%), Gaps = 38/865 (4%)
Query: 1 MDSRDSTQS----------TAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLL 50
MD+RDST + G +D +LSVTA LAK+A +F SR+F+ECL++L
Sbjct: 1 MDARDSTSNRDVSSSPGGSGTTTGGGGGEDDPILSVTAALAKDAWFHFNSRRFNECLEVL 60
Query: 51 KQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110
QL KK DDPK+LHNIAIAEY RDG DPKKLLE LNN++ KSEELA A+G+Q E N
Sbjct: 61 YQLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEILNNIERKSEELAHASGKQVETVSN 120
Query: 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170
G+KV GSKGSG +Q SA NS S+ MDEFD +VA+LNIA+IW+HLHEY+KALSVLE
Sbjct: 121 PGNKVVSGSKGSGATVHQASATNSLSVADMDEFDPAVARLNIAIIWYHLHEYSKALSVLE 180
Query: 171 PLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQ 230
PLY NIEPI+E TAL +CLLLLDVALAC DA +SADVL+YLEKAF G V Q D+GS Q
Sbjct: 181 PLYHNIEPIEERTALHVCLLLLDVALACQDASKSADVLLYLEKAFGFGSVGQGDNGSAAQ 240
Query: 231 Q-STNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEI 289
Q STNL+AK SVPS+SS DA NSDLA + NA EN+LSRTLS+ETLE +++ SL+I
Sbjct: 241 QQSTNLVAKSFSVPSSSSGMDA-NSDLAPSENALENSLSRTLSDETLEYESMF---SLDI 296
Query: 290 SGQNLTRPVGLSS-NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348
SGQNL RPVGLSS N+LSRT +DRS S ++KLKL +YKV+FLLLTRNLK AKREVKLA+
Sbjct: 297 SGQNLARPVGLSSSNDLSRTPIDRSFSPSEMKLKLHIYKVQFLLLTRNLKQAKREVKLAI 356
Query: 349 NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408
NIAR +DS +AL LKSQLEYAR N+RKAIKLL+A SNR EMGISSMFNN LGCIYYQL K
Sbjct: 357 NIARVRDSPMALLLKSQLEYARGNYRKAIKLLMASSNRAEMGISSMFNN-LGCIYYQLGK 415
Query: 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468
YHT++V SKALS+S+SL+KDKP KLLTF QDKSLLI YNCG+Q+LACGKP+LAARCF+K
Sbjct: 416 YHTATVLFSKALSSSSSLQKDKPWKLLTFLQDKSLLIVYNCGVQHLACGKPLLAARCFEK 475
Query: 469 SSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528
+SLVFY +PLLWLRLAECCL+ALE+GL+ R LSD S+V VHV GKGKWR+L +E+G
Sbjct: 476 ASLVFYNRPLLWLRLAECCLVALERGLLKASRVLSDKSDVTVHVFGKGKWRHLAIENGIS 535
Query: 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEES 588
+NG S+ LARQCL NALHLL+Y +LN+ K GLPSN S++E+
Sbjct: 536 RNG--------------------SLSLARQCLRNALHLLDYSELNHLKPGLPSNISLDEN 575
Query: 589 ESSEGASSKNLNHKSLSSLDSKIS-VGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC 647
E SE S K+ NHK+L+ LDSK S VGLGQV ANGDAK+QKGGTS E++QNS+S++ED+
Sbjct: 576 ELSEEGSMKSSNHKNLTGLDSKASTVGLGQVNANGDAKEQKGGTSQEIMQNSISFHEDIR 635
Query: 648 RRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLL 707
RRENQMIKQALLANLAYVELE+ENP KAL+ ARSLLELP CSRIYIFLGH+YAAEALCLL
Sbjct: 636 RRENQMIKQALLANLAYVELELENPEKALSNARSLLELPVCSRIYIFLGHVYAAEALCLL 695
Query: 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRD 767
++PKEAAEH S+YLSGG+N LPFS +D QWRVEK D EELNGG AKN SP++S+
Sbjct: 696 DKPKEAAEHLSIYLSGGNNVGLPFSQDDYVQWRVEKAFDYEELNGGSITAKNSSPDESQG 755
Query: 768 TMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGK 827
+F PEEA GTLY N AAM+A QG+ ERAHHFVTQALS++P EATLTA+YVDLMLG
Sbjct: 756 IVFLNPEEACGTLYANFAAMYAAQGDLERAHHFVTQALSLVPNRPEATLTAVYVDLMLGN 815
Query: 828 SQEALAKLKYCNHVRFLPSGLQLSK 852
SQ A+AKLK C+ VRFLPS +QL+K
Sbjct: 816 SQAAVAKLKQCSRVRFLPSDVQLNK 840
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562973|ref|XP_003549742.1| PREDICTED: CCR4-NOT transcription complex subunit 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/863 (66%), Positives = 684/863 (79%), Gaps = 17/863 (1%)
Query: 1 MDSRD----STQSTAAGNTSGEDDS--GVLSVTATLAKEAALYFQSRKFDECLDLLKQLL 54
M+SRD S STA + S D+ GV +V LAK+AAL+FQS KF EC+++L QLL
Sbjct: 1 MESRDLPSSSPSSTANRDASSATDAEDGVFTVAVALAKDAALHFQSGKFAECVEVLNQLL 60
Query: 55 DKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSK 114
KK DPK+LHNIAI ++FRDGC+DPKKLLE +N +K K++ELA A+ EQ E N+G+K
Sbjct: 61 QKKQGDPKVLHNIAIVDFFRDGCSDPKKLLEVINGIKRKNDELALASEEQGESVNNVGNK 120
Query: 115 VGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQ 174
V LGSKGS +Q S ANS S +Y DEFD SVA LNIA++WFHLH+Y K LSVLEPL+Q
Sbjct: 121 V-LGSKGSNASVHQFSGANSTSTMYTDEFDSSVAMLNIAIVWFHLHDYVKTLSVLEPLFQ 179
Query: 175 NIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQ-ST 233
NIEPIDETTAL ICLLLLD +LACHDA +SADVL YLEKAF V +Q DSG+ QQ +
Sbjct: 180 NIEPIDETTALHICLLLLDASLACHDASKSADVLTYLEKAFGVSSASQGDSGNTAQQQAV 239
Query: 234 NLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQN 293
NL+ K V ++S ADAS+SDL ++ NASEN LSR LSE+TL+ + ++ L+++GQN
Sbjct: 240 NLITKSVPVAISASAADASSSDLGSSANASENHLSRALSEDTLDYEAMI----LDMAGQN 295
Query: 294 LTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARG 353
L RP+G SSN+LSR LVDR STVDLKLKLQLYKVRFLLLTRNLK AKREVKLAMNIARG
Sbjct: 296 LVRPMGPSSNDLSRALVDR-FSTVDLKLKLQLYKVRFLLLTRNLKLAKREVKLAMNIARG 354
Query: 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413
+DSS+AL LKSQLEYAR NHRKA+KLL+A +NRT+ SS+FNNNLGCIYYQL KY TSS
Sbjct: 355 RDSSMALLLKSQLEYARGNHRKAVKLLMASNNRTDTAFSSIFNNNLGCIYYQLGKYQTSS 414
Query: 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473
+F SKAL+N +SLRKD+ LKL TFSQD SLLI YNCG+Q+LACGKP+LAARCFQK+SLVF
Sbjct: 415 LFFSKALTNCSSLRKDQALKLATFSQDNSLLIIYNCGVQHLACGKPILAARCFQKASLVF 474
Query: 474 YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHV 533
YKQPLLWLRL+ECCLMALEKGL+ S+ V V V+G GKWR LV+ED NG V
Sbjct: 475 YKQPLLWLRLSECCLMALEKGLIKSSWVPSEKLGVGVCVVGIGKWRQLVVEDQISGNGLV 534
Query: 534 DSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEG 593
DS E DD G DG+ KLSM LARQCLLNALHLL+ N K GLPSNSSVE+++ SE
Sbjct: 535 DSSEGDDCP-GEDGRLKLSMSLARQCLLNALHLLDSNSANCLKSGLPSNSSVEDNDGSEV 593
Query: 594 ASSKNLNHKSLSSLDSK---ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650
+ SKN N K+L +DSK ++VGLGQV ANGD K+QKGG S E++QNSLSYYE+V +RE
Sbjct: 594 SPSKNSNIKNLHGIDSKAFSVAVGLGQVNANGDTKEQKGGNSQELVQNSLSYYENVRKRE 653
Query: 651 NQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRP 710
NQ++KQA+LANLAYVELE++NPVKAL+ A+SLLELP+CSRIYIFLGH+YAAEALCLLNRP
Sbjct: 654 NQLVKQAVLANLAYVELELDNPVKALSVAKSLLELPECSRIYIFLGHVYAAEALCLLNRP 713
Query: 711 KEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMF 770
KEAAEH S YLSGG+N DLPFS EDCE+W+ E+ D +E+NGG AKN S E ++ +F
Sbjct: 714 KEAAEHLSFYLSGGNNVDLPFSLEDCEKWQPERTADFDEVNGGSTTAKNSSLEGTQSIVF 773
Query: 771 PKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQE 830
KPEEAR T+Y N A M AMQGEFE+++ V QALSILP S EATLTA+YVDLMLGK QE
Sbjct: 774 LKPEEARATIYANFAVMSAMQGEFEKSNILVAQALSILPNSPEATLTAVYVDLMLGKPQE 833
Query: 831 ALAKLKYCNHVRFLPSGLQLSKS 853
AL KLK C+ +RFLPSG+ L+KS
Sbjct: 834 ALTKLKRCSRIRFLPSGITLNKS 856
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582329|ref|XP_002531955.1| conserved hypothetical protein [Ricinus communis] gi|223528401|gb|EEF30437.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/834 (68%), Positives = 672/834 (80%), Gaps = 26/834 (3%)
Query: 19 DDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCT 78
+D VLSV A LAK+A+L+FQSR+F ECL +L QL KK DDPK+LHNIAIAEYFRDGC+
Sbjct: 38 EDDAVLSVNAALAKDASLHFQSRRFVECLAVLYQLKQKKEDDPKVLHNIAIAEYFRDGCS 97
Query: 79 DPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLV 138
DPKKLL+ LNNVK KSE+LA+A+GEQ E + +K GSKGSG +Q SAAN G+LV
Sbjct: 98 DPKKLLDVLNNVKKKSEQLAQASGEQVEAANSAVNKATQGSKGSGATSHQFSAANGGTLV 157
Query: 139 YMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALAC 198
YMDEFD +VA LNIA+IWFHLHEY KALSVLEPLY NIEPIDETTAL +CLLLLDVALAC
Sbjct: 158 YMDEFDPAVATLNIAIIWFHLHEYTKALSVLEPLYHNIEPIDETTALHVCLLLLDVALAC 217
Query: 199 HDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAA 258
DA +SADVLIYLEKAF VG V Q D + QQS NL+AK +SVPS+SS DAS+SDLA
Sbjct: 218 QDASKSADVLIYLEKAFGVGGVGQGDGSTAQQQSANLVAKSTSVPSSSSVVDASSSDLAT 277
Query: 259 TVNASENALSRT--LSEETLEDDTVLALSSLEISGQNLTRPVGLSS-NELSRTLVDRSIS 315
+ N EN+LSRT LSEETLE +T+ SLEISGQNLTRP LSS N+LSR VDR++S
Sbjct: 278 SGNGLENSLSRTLSLSEETLEYETMF---SLEISGQNLTRPSALSSANDLSRAQVDRTMS 334
Query: 316 TVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRK 375
++DLKLKLQLYKVRFLLLTRNLK AKREVKLAMNIARG+DSS AL LK+QLEYAR NHRK
Sbjct: 335 SIDLKLKLQLYKVRFLLLTRNLKQAKREVKLAMNIARGRDSSTALLLKAQLEYARGNHRK 394
Query: 376 AIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435
AIKLL+A SNRTEMG+SSMF NNLGCIY+QL KYH+SSV SKAL++S+SLRKDKPLK+L
Sbjct: 395 AIKLLMASSNRTEMGVSSMF-NNLGCIYFQLGKYHSSSVLFSKALTSSSSLRKDKPLKML 453
Query: 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGL 495
TFSQDKSLLI YNCG+Q+L CGKP LAAR FQK+SL+FY P+LWLRLAECCLMAL+KGL
Sbjct: 454 TFSQDKSLLIMYNCGIQHLVCGKPFLAARFFQKASLIFYNVPILWLRLAECCLMALDKGL 513
Query: 496 VAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPL 555
+ +D SE+ VHVIGKGKWR+L +++G +NG+ DS ++D L S+G PKLS+ L
Sbjct: 514 IKA----ADKSEIVVHVIGKGKWRHLAIDNGKPRNGYADSIGREDLFLDSNGHPKLSLSL 569
Query: 556 ARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK---IS 612
ARQCLLNALHLL+ D+N+ K LPS+ S+EE+ESS+ S KN NHKSL+ D++ +S
Sbjct: 570 ARQCLLNALHLLDSCDINHLKSTLPSSISLEENESSDAGSLKNSNHKSLTGHDTRASNVS 629
Query: 613 VGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENP 672
VGLGQ+ +NGD K+ KGGTS E++QNS+SY+ED+ RRENQMIKQALLA+LAYVELE+ENP
Sbjct: 630 VGLGQLNSNGDVKEPKGGTSQEIMQNSISYFEDIHRRENQMIKQALLADLAYVELELENP 689
Query: 673 VKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFS 732
KAL+AA+ LLELP+CSRIY+FL H+YAAEALC+LN+PKEAAE+ S+Y+SGG+N +LPFS
Sbjct: 690 EKALSAAKCLLELPECSRIYVFLSHVYAAEALCVLNKPKEAAEYLSIYMSGGNNVELPFS 749
Query: 733 GEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQG 792
ED EQ R EK D EE NGG A AK+ S E+ + F KPEEARG LY N A M+A QG
Sbjct: 750 QEDTEQLRAEKSYDYEESNGGSATAKSSSVEEPQGMEFLKPEEARGILYTNFATMYAAQG 809
Query: 793 EFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRFLPS 846
E ERAHHFV+QALS++P S EATLTA+YVDL L H R LPS
Sbjct: 810 EIERAHHFVSQALSLVPDSPEATLTAVYVDLYLA------------GHKRRLPS 851
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090340|ref|XP_002308973.1| predicted protein [Populus trichocarpa] gi|222854949|gb|EEE92496.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/865 (66%), Positives = 681/865 (78%), Gaps = 50/865 (5%)
Query: 1 MDSRDSTQS---------TAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLK 51
MD+RDST + G ++ +LSVTA LAK+A L+F SR+F+ECL++L
Sbjct: 1 MDARDSTSNRDVSSSGGSGTTTGGGGGEEDPILSVTAALAKDAWLHFNSRRFNECLEVLY 60
Query: 52 QLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111
QL KK DDPK+LHNIAIAEY RDG DPKKLLE LNN++ KS+ELA +GEQ E N+
Sbjct: 61 QLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEVLNNIERKSKELAHTSGEQVETVSNL 120
Query: 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEP 171
G+KV G+ S+VYMDEFD +VA+LNIA+IW+HLHEY+KALSVLEP
Sbjct: 121 GNKVISGT----------------SVVYMDEFDPTVARLNIAIIWYHLHEYSKALSVLEP 164
Query: 172 LYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQ 231
LY NIEPI+E TAL +CLLLLDVALAC DA +SADVL+YLEKAF GCV Q ++G+ QQ
Sbjct: 165 LYHNIEPIEERTALHVCLLLLDVALACQDASKSADVLLYLEKAFGFGCVGQSENGNTAQQ 224
Query: 232 -STNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLS--EETLEDDTVLALSSLE 288
S +L+AK SVPS+SS DA NSDLA++ NA E +LSRTLS +ETLE +++ SL+
Sbjct: 225 QSASLVAKSLSVPSSSSGMDA-NSDLASSENALEKSLSRTLSLSDETLEYESMF---SLD 280
Query: 289 ISGQNLTRPVGLS-SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347
ISGQ+L RP GLS S +LSRT +DRS S ++KLKL LYKV+FLLLTRNLK AKREVKLA
Sbjct: 281 ISGQDLARPAGLSFSTDLSRTPIDRSFSPSEMKLKLHLYKVQFLLLTRNLKQAKREVKLA 340
Query: 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407
+NIAR +DS +AL LKSQLEYAR NHRKAIKLL+A SNRTEMGISSMFNN LGCIYYQL
Sbjct: 341 INIARVRDSPMALLLKSQLEYARSNHRKAIKLLMAASNRTEMGISSMFNN-LGCIYYQLG 399
Query: 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQ 467
KYHT+SV SKALS+S+SL+KDKP KLLTF QDKSLLI YNCG+Q+LACGKP+LAARCF+
Sbjct: 400 KYHTASVLFSKALSSSSSLQKDKPWKLLTFLQDKSLLIVYNCGVQHLACGKPLLAARCFE 459
Query: 468 KSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGF 527
K+SLVFY +PLLWLRLAECCL+ALE+GL+ R LSD S+V VHV GKGKWR+L +E+G
Sbjct: 460 KASLVFYNRPLLWLRLAECCLVALERGLLKASRVLSDKSDVTVHVFGKGKWRHLAIENGI 519
Query: 528 RKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEE 587
+NG+VDS EK+D LGSDGQ KLS+PLARQCLLNALHLL+Y LN+ K GLPSN S++E
Sbjct: 520 SRNGYVDSAEKEDMFLGSDGQLKLSVPLARQCLLNALHLLDYSGLNHLKPGLPSNLSLDE 579
Query: 588 SESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC 647
+E SE S K+L GQV ANGDAK+QKGGTS E +QNS+S++ED+
Sbjct: 580 NEMSEAGSMKSL----------------GQVNANGDAKEQKGGTSQESMQNSISFHEDIR 623
Query: 648 RRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLL 707
RRENQ++KQALLANLAYVELE+ENP KAL+ ARSLLELP CSRIYIFLGH+YAAEALC+L
Sbjct: 624 RRENQLLKQALLANLAYVELELENPEKALSTARSLLELPVCSRIYIFLGHLYAAEALCML 683
Query: 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRD 767
N+PKEAAEH S+YLSGG+N +LPFS ED EQWRVEK D EE+NGG A KN SPE+S+
Sbjct: 684 NKPKEAAEHLSIYLSGGNNVELPFSQEDFEQWRVEKAFDYEEMNGGSVATKNSSPEESQG 743
Query: 768 TMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGK 827
+F PEEARGTLY N A + A QG+ ERAHHFVTQALS++P +ATLTA+YVDLML
Sbjct: 744 IVFLNPEEARGTLYTNFAVLCAAQGDLERAHHFVTQALSLVPNHPQATLTAVYVDLMLCN 803
Query: 828 SQEALAKLKYCNHVRFLPSGLQLSK 852
SQ A+ KLK C+ VRFLPSG+QLSK
Sbjct: 804 SQAAIGKLKQCSRVRFLPSGVQLSK 828
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478239|ref|XP_003609405.1| CCR4-NOT transcription complex subunit 10-B [Medicago truncatula] gi|355510460|gb|AES91602.1| CCR4-NOT transcription complex subunit 10-B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/837 (64%), Positives = 656/837 (78%), Gaps = 10/837 (1%)
Query: 16 SGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRD 75
S E D GVL++T LAK+AAL++QS KF EC+D+++ LL KP DPK+LHN AIAE+FRD
Sbjct: 21 SAEVDDGVLALTVALAKDAALHYQSGKFAECVDVMQHLLLNKPTDPKVLHNTAIAEFFRD 80
Query: 76 GCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSG 135
GC+DPKKLLE + ++K K +EL+ +Q E N+G+KV LGSKGS Q S NS
Sbjct: 81 GCSDPKKLLEVIYSIKRKYDELSLTYVDQGELVNNVGNKVALGSKGSNASAPQFSGVNST 140
Query: 136 SLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVA 195
++ DE D SVA LNIA+IWFHLH+YAK +SVLEPL+Q I+PI E+TAL ICLLLLD +
Sbjct: 141 DTMHPDELDSSVATLNIAIIWFHLHDYAKTVSVLEPLFQKIDPIKESTALHICLLLLDAS 200
Query: 196 LACHDAFRSADVLIYLEKAFSVGCVNQVDSG-SMGQQSTNLLAKYSSVPSNSSTADASNS 254
LACHDA +SADVL YLE+AF VG NQVD+G + QQS NL K V + S AD S+S
Sbjct: 201 LACHDASKSADVLTYLERAFGVGSANQVDNGNTTQQQSANLTTKSVPVTISESAADPSSS 260
Query: 255 DLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSI 314
DL ++ NASEN LSRT SE+ L+ + ++ L++ QNLTRP SN LSRTLVDR
Sbjct: 261 DLGSSANASENNLSRTFSEDGLDYEAMI----LDMGSQNLTRPTVPPSNYLSRTLVDR-F 315
Query: 315 STVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHR 374
ST+DLKLKLQL KV+FL+LTRNLK AKREVKLAMNIARG+DSS+AL LKSQLEYAR NHR
Sbjct: 316 STLDLKLKLQLCKVQFLILTRNLKIAKREVKLAMNIARGRDSSMALILKSQLEYARGNHR 375
Query: 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434
KAIKLL+A SNRT+ SS+FNNNLGCIYYQL KY TSS F SKAL+N +SLRK++ KL
Sbjct: 376 KAIKLLMASSNRTDTEFSSIFNNNLGCIYYQLGKYQTSSFFFSKALTNCSSLRKEQQKKL 435
Query: 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKG 494
TFSQDKSLLI YNCG+Q+LACGKP+LAARCFQK+SLVFYKQPLLWLRL+ECCLMALEKG
Sbjct: 436 ATFSQDKSLLIIYNCGVQHLACGKPILAARCFQKASLVFYKQPLLWLRLSECCLMALEKG 495
Query: 495 LVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMP 554
L+ R S+ EV V V+G KWR LV+ED NGH++S + DD G DG+ KLSM
Sbjct: 496 LIKSCRVPSEKMEVGVCVVGLEKWRQLVVEDQIPGNGHMESSKGDDCVPGEDGRLKLSMS 555
Query: 555 LARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK---I 611
LARQCLLNALHLL+ N K GLPSNSSVE+ ++SE SKNL+ K+ DSK +
Sbjct: 556 LARQCLLNALHLLDSYSTNRLKSGLPSNSSVED-DTSEMLPSKNLSRKNSHGADSKAFSV 614
Query: 612 SVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN 671
+V +GQV +NGD K+QKGG S E+ QNSLSYYEDVCRR+NQ++KQA+LANLAYVELE++N
Sbjct: 615 AVAVGQVNSNGDTKEQKGGASQELFQNSLSYYEDVCRRDNQLVKQAVLANLAYVELELDN 674
Query: 672 PVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPF 731
PVKALAAA+SL ELP+CSRIYIFLGH+YAAEALCLLNRPKEAA++ S YLSGG++ +LPF
Sbjct: 675 PVKALAAAKSLFELPECSRIYIFLGHVYAAEALCLLNRPKEAADYLSYYLSGGNSVELPF 734
Query: 732 SGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791
S +DCE+ +VE+ ++ E+ NGG AAKN S +D + +F KPEEAR ++Y N A M AMQ
Sbjct: 735 SQDDCEKLQVERTVEFEDGNGGSTAAKNSSLQDPQSIVFLKPEEARASIYANFAVMSAMQ 794
Query: 792 GEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGL 848
GE E+A+ VTQALSILP S EATLTA+YVDL+LGK QEALAKLK C+ +RFLPSG
Sbjct: 795 GELEKANILVTQALSILPNSPEATLTAVYVDLLLGKPQEALAKLKSCSRIRFLPSGF 851
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464972|ref|XP_004150203.1| PREDICTED: CCR4-NOT transcription complex subunit 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/864 (63%), Positives = 666/864 (77%), Gaps = 23/864 (2%)
Query: 1 MDSRDSTQSTAA---GNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKK 57
MD+RDS+ S+A G++S +D G LS+TA LA+EAA FQS K+ C+++L QLL KK
Sbjct: 1 MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
Query: 58 PDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGL 117
DDPK+LHNIAIAEY RDGC++PKKLLE LNNVK +SE LA ++GEQT+ +
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKKRSENLAVSSGEQTDA-------LNT 113
Query: 118 GSKGSGVVGNQVSA----ANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY 173
+K + V GN VSA AN+ +LVYM+EFD S+A LNIA++WF+LHEY KAL+VLEPLY
Sbjct: 114 ENKSTLVKGNNVSAHQAPANNANLVYMEEFDASIAILNIAIVWFNLHEYTKALAVLEPLY 173
Query: 174 QNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMG-QQS 232
QNIEPIDETTAL IC LLLDV LAC DA SADVL+YLEKAF V NQ ++GS G QS
Sbjct: 174 QNIEPIDETTALHICFLLLDVGLACRDASLSADVLLYLEKAFGVTSTNQSENGSTGVPQS 233
Query: 233 TNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQ 292
TN++AK SSVP+N+S D+SNSDLAA+VN+SEN LSRTLSEET E +++L S+L+I GQ
Sbjct: 234 TNVVAKSSSVPTNASAFDSSNSDLAASVNSSENPLSRTLSEETFEYESML--STLDIGGQ 291
Query: 293 NLTRPVGL-SSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA 351
N G SSN L R VDRS+STVDLKLKLQLYKVRFLLLTRNLK AKRE K AMNIA
Sbjct: 292 NPATQTGFPSSNVLLRIPVDRSLSTVDLKLKLQLYKVRFLLLTRNLKQAKREAKHAMNIA 351
Query: 352 RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411
RG DSS+AL LK++LEYAR NHRKA+KLLLA SNRT++GISSM NNNLGCIY QL KYH+
Sbjct: 352 RGIDSSMALLLKAELEYARGNHRKAMKLLLASSNRTDLGISSMLNNNLGCIYNQLGKYHS 411
Query: 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471
S+VF SKA+SNS +L KD+ K T SQD SLLI YNCG+QYLACGKP+LAARCFQK+SL
Sbjct: 412 STVFFSKAVSNSTALWKDR--KPTTVSQDNSLLIVYNCGVQYLACGKPLLAARCFQKASL 469
Query: 472 VFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNG 531
+FY +PLLWLRLAECCLMA EKGL+ + SD S++KVHV+G GKWR LV+EDG KNG
Sbjct: 470 IFYNRPLLWLRLAECCLMASEKGLLKDNLADSDRSDIKVHVVGMGKWRELVLEDGVSKNG 529
Query: 532 HVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESS 591
+S ++D S+GQPKLS+ LARQCL NAL+LLN+ + ++ L NSS+E+ +S+
Sbjct: 530 RANSSGREDGHFSSEGQPKLSISLARQCLSNALYLLNHSETSFLHSVLSPNSSLEDRDSN 589
Query: 592 EGASSKNLNHKSLSSLDSKISVGLG--QVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRR 649
E A+S+ N K+L +DSK S LG Q+TANGDAK+QKG T E++QNSLSYY+++ RR
Sbjct: 590 EVAASRR-NFKNLHCIDSKTSSTLGSSQITANGDAKEQKGATIQELVQNSLSYYDEISRR 648
Query: 650 ENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNR 709
EN +IKQALLANLAYVEL++ NP++AL ARSL+EL + S++Y FLGH+YAAEALCLLNR
Sbjct: 649 ENLLIKQALLANLAYVELKLGNPLRALTIARSLVELQESSKVYTFLGHVYAAEALCLLNR 708
Query: 710 PKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTM 769
PKEAA+H YL GG +F LPFS EDCE WR++ D E NGG A S E+
Sbjct: 709 PKEAADHLLYYLFGGVDFKLPFSQEDCELWRMDGTGDLEGANGGSTTANISSQEEPHHIN 768
Query: 770 FPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQ 829
F +PEEAR L N A + A+QG FE A FV++ALSI+P S EATLTA+YVDL LGKSQ
Sbjct: 769 FLRPEEARAVLLANFATVSALQGNFEEAKQFVSEALSIMPNSPEATLTAVYVDLALGKSQ 828
Query: 830 EALAKLKYCNHVRFLPSGLQLSKS 853
EA+AKLK C+ VRFLPSGL + +S
Sbjct: 829 EAVAKLKQCSCVRFLPSGLTMKRS 852
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528964|ref|XP_004171471.1| PREDICTED: CCR4-NOT transcription complex subunit 10-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/772 (63%), Positives = 594/772 (76%), Gaps = 20/772 (2%)
Query: 90 VKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSA----ANSGSLVYMDEFDV 145
V+ +SE LA ++GEQT+ + +K + V GN VSA AN+ +LVYM+EFD
Sbjct: 16 VQKRSENLAVSSGEQTDA-------LNTENKSTLVKGNNVSAHQAPANNANLVYMEEFDA 68
Query: 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSA 205
S+A LNIA++WF+LHEY KAL+VLEPLYQNIEPIDETTAL IC LLLDV LAC DA SA
Sbjct: 69 SIAILNIAIVWFNLHEYTKALAVLEPLYQNIEPIDETTALHICFLLLDVGLACRDASLSA 128
Query: 206 DVLIYLEKAFSVGCVNQVDSGSMG-QQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264
DVL+YLEKAF V NQ ++GS G QSTN++AK SSVP+N+S D+SNSDLAA+VN+SE
Sbjct: 129 DVLLYLEKAFGVTSTNQSENGSTGVPQSTNVVAKSSSVPTNASAFDSSNSDLAASVNSSE 188
Query: 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGL-SSNELSRTLVDRSISTVDLKLKL 323
N LSRTLSEET E +++L S+L+I GQN G SSN L R VDRS+STVDLKLKL
Sbjct: 189 NPLSRTLSEETFEYESML--STLDIGGQNPATQTGFPSSNVLLRIPVDRSLSTVDLKLKL 246
Query: 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383
QLYKVRFLLLTRNLK AKRE K AMNIARG DSS+AL LK++LEYAR NHRKA+KLLLA
Sbjct: 247 QLYKVRFLLLTRNLKQAKREAKHAMNIARGIDSSMALLLKAELEYARGNHRKAMKLLLAS 306
Query: 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL 443
SNRT++GISSM NNNLGCIY QL KYH+S+VF SKA+SNS +L KD+ K T SQD SL
Sbjct: 307 SNRTDLGISSMLNNNLGCIYNQLGKYHSSTVFFSKAVSNSTALWKDR--KPTTVSQDNSL 364
Query: 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLS 503
LI YNCG+QYLACGKP+LAARCFQK+SL+FY +PLLWLRLAECCLMA EKGL+ + S
Sbjct: 365 LIVYNCGVQYLACGKPLLAARCFQKASLIFYNRPLLWLRLAECCLMASEKGLLKDNLADS 424
Query: 504 DGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563
D S++KVHV+G GKWR LV+EDG KNG +S ++D S+GQPKLS+ LARQCL NA
Sbjct: 425 DRSDIKVHVVGMGKWRELVLEDGVSKNGRANSSGREDGHFSSEGQPKLSISLARQCLSNA 484
Query: 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLG--QVTAN 621
L+LLN+ + ++ L NSS+E+ +S+E A+S+ N K+L +DSK S LG Q+TAN
Sbjct: 485 LYLLNHSETSFLHSVLSPNSSLEDRDSNEVAASRR-NFKNLHCIDSKTSSTLGSSQITAN 543
Query: 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARS 681
GDAK+QKG T E++QNSLSYY+++ RREN +IKQALLANLAYVEL++ NP++AL ARS
Sbjct: 544 GDAKEQKGATIQELVQNSLSYYDEISRRENLLIKQALLANLAYVELKLGNPLRALTIARS 603
Query: 682 LLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRV 741
L+EL + S++Y FLGH+YAAEALCLLNRPKEAA+H YL GG +F LPFS EDCE WR+
Sbjct: 604 LVELQESSKVYTFLGHVYAAEALCLLNRPKEAADHLLYYLFGGVDFKLPFSQEDCELWRM 663
Query: 742 EKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFV 801
+ D E NGG A S E+ F +PEEAR L N A + A+QG FE A FV
Sbjct: 664 DGTGDLEGANGGSTTANISSQEEPHHINFLRPEEARAVLLANFATVSALQGNFEEAKQFV 723
Query: 802 TQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGLQLSKS 853
++ALSI+P S EATLTA+YVDL LGKSQEA+AKLK C+ VRFLPSGL + +S
Sbjct: 724 SEALSIMPNSPEATLTAVYVDLALGKSQEAVAKLKQCSCVRFLPSGLTMKRS 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 854 | ||||||
| TAIR|locus:2169503 | 786 | AT5G35430 "AT5G35430" [Arabido | 0.503 | 0.547 | 0.535 | 1e-203 | |
| MGI|MGI:1926143 | 744 | Cnot10 "CCR4-NOT transcription | 0.195 | 0.224 | 0.301 | 3.5e-40 | |
| RGD|1359219 | 744 | Cnot10 "CCR4-NOT transcription | 0.195 | 0.224 | 0.301 | 5.5e-40 | |
| UNIPROTKB|Q9H9A5 | 744 | CNOT10 "CCR4-NOT transcription | 0.195 | 0.224 | 0.306 | 1.3e-39 | |
| UNIPROTKB|Q5ZIW2 | 744 | CNOT10 "CCR4-NOT transcription | 0.195 | 0.224 | 0.306 | 4.6e-39 | |
| ZFIN|ZDB-GENE-060929-368 | 748 | cnot10 "CCR4-NOT transcription | 0.199 | 0.227 | 0.305 | 5.1e-33 | |
| FB|FBgn0260444 | 635 | CG18616 [Drosophila melanogast | 0.173 | 0.233 | 0.320 | 1.4e-25 | |
| DICTYBASE|DDB_G0281363 | 934 | DDB_G0281363 "putative CCR4-NO | 0.151 | 0.138 | 0.307 | 3.5e-18 |
| TAIR|locus:2169503 AT5G35430 "AT5G35430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.0e-203, Sum P(3) = 1.0e-203
Identities = 244/456 (53%), Positives = 310/456 (67%)
Query: 127 NQVSAANSGSLVYM--DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184
+QV AAN G+ V + D FD +V LNIAV WFHL+ Y+K+ S+LEPL+QNI+ +DET A
Sbjct: 104 DQVEAANPGTNVSVSKDHFDRTVTTLNIAVTWFHLYHYSKSFSILEPLFQNIQRLDETIA 163
Query: 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPX 244
LQIC LLLD++LAC DA V Y++KAF VG + ++GS Q S+N +++ SS+
Sbjct: 164 LQICFLLLDISLACRDAVNFLAVFDYMDKAFGVGFGSHEENGSTMQLSSNQVSRTSSL-- 221
Query: 245 XXXXXXXXXXXXXXXVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG-LSSN 303
+ A+E++L EETL+ + VLA EI + + VG + +N
Sbjct: 222 --LSSSVASDTLRSDLTAAESSLC----EETLDYENVLA----EIEAEKRMKLVGHIPAN 271
Query: 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLK 363
L +TL +RS ST DLKL+LQLYKVRFLLLTRNLK AKREVK AMNIA+ +DSS+AL LK
Sbjct: 272 NLLKTLSERSFSTADLKLELQLYKVRFLLLTRNLKLAKREVKHAMNIAQKRDSSMALLLK 331
Query: 364 SQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423
SQLEYA NH KA+KLLL E G S +FNNNLGCI+YQL Y SSV KAL +
Sbjct: 332 SQLEYAHGNHPKAMKLLLVSGIHKEAGTSGIFNNNLGCIFYQLGCYQASSVLFLKALRSC 391
Query: 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483
+SLR KP K + SQ+KS+LITYNCGL YLA GKP+LAA+CFQK+S VF +QPL+WLRL
Sbjct: 392 SSLRNGKPAKTFSLSQNKSMLITYNCGLLYLASGKPLLAAQCFQKASHVFRRQPLIWLRL 451
Query: 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSL 543
AECC+MAL+KGL+ G S D SE++VHVIGKG R L++E+ NG+V+
Sbjct: 452 AECCMMALQKGLLEGGNSSLDRSEIRVHVIGKGNRRQLMIEE----NGYVELA------- 500
Query: 544 GSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGL 579
GS+ KLS+PLAR CL N ++LLN N SK L
Sbjct: 501 GSNQLSKLSLPLARVCLSNGIYLLNESLSNDSKSDL 536
|
|
| MGI|MGI:1926143 Cnot10 "CCR4-NOT transcription complex, subunit 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 3.5e-40, Sum P(4) = 3.5e-40
Identities = 56/186 (30%), Positives = 89/186 (47%)
Query: 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNS----ASL--------RKDKPLKLLTFSQDK 441
MF NNLGCI++ ++K++ + KAL + A L +K + T +K
Sbjct: 294 MFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGGTDPGKKFSGRPMCTLLTNK 353
Query: 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501
+ YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A + +
Sbjct: 354 RYELLYNCGIQLLHVGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKG 413
Query: 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561
L + ++G+G R +V+ + + + +D S P S+ A CL
Sbjct: 414 LPTKKGIVQSIVGQGYHRKIVLA-----SQSIQNTVYNDGQ--SSAIPVASVEFAAICLR 466
Query: 562 NALHLL 567
NAL LL
Sbjct: 467 NALLLL 472
|
|
| RGD|1359219 Cnot10 "CCR4-NOT transcription complex, subunit 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 5.5e-40, Sum P(4) = 5.5e-40
Identities = 56/186 (30%), Positives = 89/186 (47%)
Query: 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNS----ASL--------RKDKPLKLLTFSQDK 441
MF NNLGCI++ ++K++ + KAL + A L +K + T +K
Sbjct: 294 MFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGNTDPGKKFSGRPMCTLLANK 353
Query: 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501
+ YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A + +
Sbjct: 354 RYELLYNCGIQLLHVGRPLAAFECLVEAVQVYHANPRLWLRLAECCIAANKGTSEQETKG 413
Query: 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561
L + ++G+G R +V+ + + + +D S P S+ A CL
Sbjct: 414 LPTKKGIVQSIVGQGYHRKIVLA-----SQSIQNTVYNDGQ--SSAIPVASVEFAAICLR 466
Query: 562 NALHLL 567
NAL LL
Sbjct: 467 NALLLL 472
|
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| UNIPROTKB|Q9H9A5 CNOT10 "CCR4-NOT transcription complex subunit 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
Identities = 57/186 (30%), Positives = 89/186 (47%)
Query: 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNS----ASL--------RKDKPLKLLTFSQDK 441
MF NNLGCI++ ++K++ + KAL + A L +K + T +K
Sbjct: 294 MFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGSTDPGKKFSGRPMCTLLTNK 353
Query: 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501
+ YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A + +
Sbjct: 354 RYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKG 413
Query: 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561
L + ++G+G R +V+ + + + +D S P SM A CL
Sbjct: 414 LPSKKGIVQSIVGQGYHRKIVLA-----SQSIQNTVYNDGQ--SSAIPVASMEFAAICLR 466
Query: 562 NALHLL 567
NAL LL
Sbjct: 467 NALLLL 472
|
|
| UNIPROTKB|Q5ZIW2 CNOT10 "CCR4-NOT transcription complex subunit 10" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 4.6e-39, Sum P(4) = 4.6e-39
Identities = 57/186 (30%), Positives = 89/186 (47%)
Query: 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNS----ASL--------RKDKPLKLLTFSQDK 441
MF NNLGCI++ + K++ + KAL + A L +K + T +K
Sbjct: 294 MFWNNLGCIHFAMGKHNLGIFYFKKALQENDNACAQLGTGSSDPGKKFSGRPMCTLLTNK 353
Query: 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501
+ YNCG+Q L G+P+ A C ++ V++ P LWLR+AECC+ A + +
Sbjct: 354 RYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHSNPRLWLRIAECCIAANKGTSEQETKG 413
Query: 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561
L + ++G+G R +V+ +N V + S++ P SM A CL
Sbjct: 414 LPSKKGIVQSIVGQGYHRKIVLASQSIQN--VVYNDGQSSAI-----PVASMEFAAICLR 466
Query: 562 NALHLL 567
NAL LL
Sbjct: 467 NALLLL 472
|
|
| ZFIN|ZDB-GENE-060929-368 cnot10 "CCR4-NOT transcription complex, subunit 10" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 5.1e-33, Sum P(3) = 5.1e-33
Identities = 58/190 (30%), Positives = 92/190 (48%)
Query: 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKAL-------------SNSASLRKDKPLKLLTF 437
+ MF NNLGCI++ + K++ + KAL SN+ + +K + +
Sbjct: 289 VRCMFWNNLGCIHFAMGKHNLGLFYFKKALQENDHTCAQIGDGSNAQASKKFSGIPMCAL 348
Query: 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVA 497
+K + YNCG+Q L G+P+ A C ++ V++ P LWLRLAECC+ A +
Sbjct: 349 LANKRYELLYNCGIQLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCITANKGSSEQ 408
Query: 498 PGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLAR 557
+ L + V+G+G R +V+ +N + S E +++ P SM A
Sbjct: 409 ETKGLPSKKGIVQAVVGQGYHRKIVLASQSTQNT-IYS-EAQSAAI-----PVASMEFAA 461
Query: 558 QCLLNALHLL 567
CL NAL LL
Sbjct: 462 ICLRNALLLL 471
|
|
| FB|FBgn0260444 CG18616 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 1.4e-25, Sum P(5) = 1.4e-25
Identities = 50/156 (32%), Positives = 78/156 (50%)
Query: 362 LKSQLEYARRNHRKAIKLLLALSNR-TEMG-----ISSMFNNNLGCIYYQLAKYHTSSVF 415
LK+Q Y ++ + A K L+ ++N T+ G +S+ NN+G I+ ++ Y ++ F
Sbjct: 253 LKAQQYYIMKDFQMAAKQLMRINNECTQAGTITPQLSTCIANNMGVIHLRVRHYAIAAKF 312
Query: 416 LSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474
AL+ L ++ + L T S +S I YN G+ L +P A +CF F+
Sbjct: 313 FQNALNFDQQLARNLRQSTLQTMSSARSCEILYNLGVAMLHLRRPKEAFQCFLVPVKQFH 372
Query: 475 KQPLLWLRLAECCLMALEKGLVAPGR-SLSDGSEVK 509
P LWLR+AE C+M E LV R S S+ K
Sbjct: 373 SNPRLWLRMAEACIMEHEAKLVEEERQSQSETPSTK 408
|
|
| DICTYBASE|DDB_G0281363 DDB_G0281363 "putative CCR4-NOT complex subunit 10" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 3.5e-18, Sum P(6) = 3.5e-18
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 377 IKLLLALSNRTEM-GIS-SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434
+K L+ N M I+ +F NN+G +++ + Y ++ + SK+L +
Sbjct: 330 VKSSLSFGNDLIMESITPGIFYNNIGSLHFNIQDYTLANYYFSKSLKETQPTSTSSTTAT 389
Query: 435 LT--------FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486
T S DK + +N G+ +A GK LA C Q+S ++ PL+WLRLAEC
Sbjct: 390 ATTTTTPQTLISTDKRAQVFFNTGIVLMASGKYELAFSCLQESCILLRCSPLVWLRLAEC 449
Query: 487 CLMALEKGLVAPGRSLSDGS 506
C++A + L S SD S
Sbjct: 450 CILAHQNKL-KDKLSQSDNS 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVIII1075 | hypothetical protein (841 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 854 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 637 QNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIFL 695
+L YYE + NLA ++ +AL LEL PD ++ Y L
Sbjct: 17 DEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74
Query: 696 GHIYAAEALCLLNRPKEAAEHF 717
G Y L + +EA E +
Sbjct: 75 GLAY-----YKLGKYEEALEAY 91
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 854 | |||
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.8 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.59 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.58 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.53 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.53 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.51 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.42 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.38 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.28 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.24 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.16 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.08 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.05 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.04 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.92 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.67 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.65 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.62 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.57 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.46 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.27 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.09 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.02 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.89 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.83 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.6 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.59 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.28 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.17 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.02 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.86 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.72 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.62 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.6 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.33 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.26 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.15 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 96.11 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.1 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.07 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.97 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.48 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.34 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.31 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.23 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.99 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.94 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.82 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.5 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.37 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.11 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.85 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.77 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.64 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.31 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.18 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.93 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 92.72 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 92.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.12 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 91.66 | |
| COG3014 | 449 | Uncharacterized protein conserved in bacteria [Fun | 91.03 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.87 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 90.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 90.76 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.57 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.23 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.92 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 89.77 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.54 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 89.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.21 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 89.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.96 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.94 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 88.6 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.94 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 87.38 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 87.27 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.24 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.16 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.13 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 86.01 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 85.86 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.46 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.41 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 84.81 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 84.27 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 84.23 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.15 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 83.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 83.42 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 83.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.87 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.82 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 82.09 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.04 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 81.51 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.88 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 80.64 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.45 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.44 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 80.3 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 80.18 |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=630.36 Aligned_cols=668 Identities=45% Similarity=0.677 Sum_probs=545.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCC
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTE 106 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (854)
-.+|..+|.++|..++||.|+++++.+-.++..+..++||-+++.||+.+|++...+++.++.+...+ +.+.+..+
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~----~~~~~~~~ 92 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADA----DAPGDVSS 92 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhh----ccccchhc
Confidence 46789999999999999999999999999999999999999999999999999999999999887766 22222111
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 107 GGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
-.++.+..+.+||.||+||+.++|.+|+++.+++++.++++++.++..
T Consensus 93 --------------------------------gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~ 140 (696)
T KOG2471|consen 93 --------------------------------GLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAAS 140 (696)
T ss_pred --------------------------------chhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHH
Confidence 234566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+|++..++|+.+.+.++|++.++++++.+...... .. ++.+.. ||
T Consensus 141 v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~--~~--------------------------gn~~~~---nn---- 185 (696)
T KOG2471|consen 141 VTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK--LV--------------------------GNHIPA---NN---- 185 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cc--------------------------ccccch---hh----
Confidence 99999999999999999999999999877654221 00 000110 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
+-.+.+ . .-.+++..+.+.+.+++.||.+.|+++.+++.+++++|.
T Consensus 186 ~~kt~s--------~--------------------------~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~ 231 (696)
T KOG2471|consen 186 LLKTLS--------P--------------------------SAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKH 231 (696)
T ss_pred hcccCC--------c--------------------------chhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhh
Confidence 000000 0 001223334455667999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~-------~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
++++. .+.+.++++++++++..|+|.+|.+.+...-...+|. ....+||||||||+++|.|..++.+|.||
T Consensus 232 vmn~a--~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA 309 (696)
T KOG2471|consen 232 VMNIA--QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA 309 (696)
T ss_pred hhhhc--CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence 99999 8999999999999999999999999998865422222 13467799999999999999999999999
Q ss_pred HH-hchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccC
Q 003047 420 LS-NSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVA 497 (854)
Q Consensus 420 L~-~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e 497 (854)
|+ .+.++..+ .+-+...+..+++.+++||.|..|++.|++-.|++||.+++..++.+|++|+|||+|||+.++++..+
T Consensus 310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhh
Confidence 97 55555433 23334455677889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc-c
Q 003047 498 PGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS-K 576 (854)
Q Consensus 498 ~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~-~ 576 (854)
+.++.+.++++++.+||+| ||+.++..+. ..+.. ++ +..+|.++++||+.|+||||.|.|+ .+... -
T Consensus 390 e~~~s~s~~~i~~~vig~g-~rr~~m~~~n---t~~~~--~q-----S~~~p~~slefA~vCLrnal~Ll~e-~q~~~~~ 457 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKG-NRRQLMIEEN---TYVEL--AQ-----SNQLPKLSLEFARVCLRNALYLLNE-KQDLGSI 457 (696)
T ss_pred hccCCcccccceeeeeccc-chhheeeccc---ceecc--cc-----ccCCCccccHHHHHHHHhhhhcCch-hhcchhh
Confidence 8888888999999999999 8887777753 23332 33 5899999999999999999999988 33221 1
Q ss_pred cCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHH
Q 003047 577 FGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQ 656 (854)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 656 (854)
++.++..+.+++..-+.-+ ++ ..|.++.++ +.++ .+|+++|+..+.+++||+
T Consensus 458 ~~~a~ns~~~g~~~e~~e~-------------~~----------t~~Sk~h~g---d~~~--~~p~ssp~~~e~leNm~~ 509 (696)
T KOG2471|consen 458 LSVAMNSTKEGSSSEHEEG-------------NT----------TTDSKEHKG---DMSQ--EIPQSSPSAFEDLENMRQ 509 (696)
T ss_pred hhhhccccccCCCCcCCCC-------------CC----------CcchhcCCC---CCCc--cCCCCCcchHHHHHHHHH
Confidence 2222222222211000000 00 001111111 1222 368899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
+|++++|||.+++||+..|+.++.++|..|+++++|+||||+|+|||||.++|+.||+.||++.+....++.+++-..+.
T Consensus 510 ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df 589 (696)
T KOG2471|consen 510 AIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDF 589 (696)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999655667777888888
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP--RSTEA 814 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P--~~~~a 814 (854)
++|-++. ++++..++++ |+ +.|.+|++|+..+++|||.+++.+|++++|+.|+.+|..+.| ..+.+
T Consensus 590 ~~~~~~~-------e~l~~s~~r~----~q-~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A 657 (696)
T KOG2471|consen 590 DQWWKHT-------ETLDPSTGRT----RQ-SVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQA 657 (696)
T ss_pred hhhhccc-------cccCCcCCCC----cc-cccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHH
Confidence 8886665 3677677775 55 789999999999999999999999999999999999999998 56899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCcccccccccccC
Q 003047 815 TLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGLQLSKS 853 (854)
Q Consensus 815 ~~l~~y~~L~~G~~~eA~~~lk~~~~~~~~~~~~~~~~~ 853 (854)
+.+.+|+.|++|+.+.|++++|+++++|++|.-+++.++
T Consensus 658 ~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~evr~~ 696 (696)
T KOG2471|consen 658 TVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEVRAS 696 (696)
T ss_pred HHHHHHHHHhcCCCcchHHHHHhcccccccCcchhhccC
Confidence 999999999999999999999999999999998877654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.93 Aligned_cols=447 Identities=16% Similarity=0.102 Sum_probs=314.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
...-|.+.|+.|+|.+|++....+-..+|.+-..+--++..+|-.+ ++.+.......++
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~------r~d~s~a~~~~a~--------------- 109 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS------RLDKSSAGSLLAI--------------- 109 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc------chhhhhhhhhhhh---------------
Confidence 5667889999999999999999999999999888777776655222 2222222222222
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
.+ .+.-+..|-|+|++|...|++..|+..|+.+++..+..-| .+.
T Consensus 110 -----------------------------r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fid-----a~i 154 (966)
T KOG4626|consen 110 -----------------------------RK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFID-----AYI 154 (966)
T ss_pred -----------------------------hc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhH-----HHh
Confidence 11 4556779999999999999999999999999995544333 588
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh-
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS- 268 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 268 (854)
+++..|..+|+...|- +-|..++.++ ++ ..+...+.+|.++
T Consensus 155 nla~al~~~~~~~~a~---~~~~~alqln----P~-------------------------------l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAV---QCFFEALQLN----PD-------------------------------LYCARSDLGNLLKA 196 (966)
T ss_pred hHHHHHHhcCCCcccH---HHHHHHHhcC----cc-------------------------------hhhhhcchhHHHHh
Confidence 8999999999999997 5667777775 32 1223333444444
Q ss_pred -hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 269 -RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
+++-|+..-|...+ + .| ..-..++.|||-++ ..+|++-.|+..++++
T Consensus 197 ~Grl~ea~~cYlkAi-----~--~q---p~fAiawsnLg~~f----------------------~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAI-----E--TQ---PCFAIAWSNLGCVF----------------------NAQGEIWLAIQHYEEA 244 (966)
T ss_pred hcccchhHHHHHHHH-----h--hC---CceeeeehhcchHH----------------------hhcchHHHHHHHHHHh
Confidence 44545555555554 1 11 01113444554433 2367777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
+.++ |+..++++++|++|...+.|++|+.+|.+++. ..| ..+.++-|||+||+.+|..+.||..|++||..
T Consensus 245 vkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----- 315 (966)
T KOG4626|consen 245 VKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALN-LRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----- 315 (966)
T ss_pred hcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-cCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc-----
Confidence 7777 77777777777777777777777777777777 566 35777777777777777777777777777776
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcc
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSE 507 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~ 507 (854)
.|..+.++.|+|+++-..|+..||.+||.++|.+.|+++++.++||+++. ..+
T Consensus 316 -----------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~---E~~------------- 368 (966)
T KOG4626|consen 316 -----------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR---EQG------------- 368 (966)
T ss_pred -----------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH---Hhc-------------
Confidence 34456677777777777777777777777777777777777777777665 110
Q ss_pred cceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccc
Q 003047 508 VKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEE 587 (854)
Q Consensus 508 ~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~ 587 (854)
.++.|...|+.||...|+..
T Consensus 369 --------------------------------------------~~e~A~~ly~~al~v~p~~a---------------- 388 (966)
T KOG4626|consen 369 --------------------------------------------KIEEATRLYLKALEVFPEFA---------------- 388 (966)
T ss_pred --------------------------------------------cchHHHHHHHHHHhhChhhh----------------
Confidence 12557777777777777743
Q ss_pred cccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHH
Q 003047 588 SESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVEL 667 (854)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l 667 (854)
.++.+||.++.
T Consensus 389 ---------------------------------------------------------------------aa~nNLa~i~k 399 (966)
T KOG4626|consen 389 ---------------------------------------------------------------------AAHNNLASIYK 399 (966)
T ss_pred ---------------------------------------------------------------------hhhhhHHHHHH
Confidence 22456788888
Q ss_pred HcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhh
Q 003047 668 EMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIID 746 (854)
Q Consensus 668 ~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 746 (854)
.+|++.+|+.+|+++|. .|...++|.++|+.|. .+|+.++|++|+.+++. .+
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-----e~g~v~~A~q~y~rAI~--~n-------------------- 452 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-----EMGDVSAAIQCYTRAIQ--IN-------------------- 452 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-----HhhhHHHHHHHHHHHHh--cC--------------------
Confidence 88888888888888887 7778888888888666 47888888888888882 11
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 747 CEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
|. -|++|.|||.+|...|+.++|+..|+++|.++||++.+.-++..++
T Consensus 453 ------------------Pt----------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 453 ------------------PT----------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred ------------------cH----------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 32 6778888888888888888888888888888888877766665553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.26 Aligned_cols=428 Identities=17% Similarity=0.074 Sum_probs=338.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGS 113 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (854)
+-.+|+-.+++.+...-..++++.|.-++++.|+|.+.-.+ .++.+++...+.+++
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker------g~~~~al~~y~~aie------------------ 144 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER------GQLQDALALYRAAIE------------------ 144 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh------chHHHHHHHHHHHHh------------------
Confidence 34567778888888888888888888888888888664433 445667777777774
Q ss_pred cccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHH
Q 003047 114 KVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLD 193 (854)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~ 193 (854)
+ +|+...+|.|+|.+|..+|+.+.|...|.+.++..+.+-. +...+++
T Consensus 145 --------------------------l-~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-----a~s~lgn 192 (966)
T KOG4626|consen 145 --------------------------L-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-----ARSDLGN 192 (966)
T ss_pred --------------------------c-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh-----hhcchhH
Confidence 1 4667778888888888888888888888888885443322 3455788
Q ss_pred HHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh--hhh
Q 003047 194 VALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS--RTL 271 (854)
Q Consensus 194 vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 271 (854)
+.-..|+..+|-. -|.|++... + -.+..|.|++..+. +.+
T Consensus 193 Llka~Grl~ea~~---cYlkAi~~q----p-------------------------------~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 193 LLKAEGRLEEAKA---CYLKAIETQ----P-------------------------------CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHhhcccchhHH---HHHHHHhhC----C-------------------------------ceeeeehhcchHHhhcchH
Confidence 8888888888863 456665443 0 12234444444444 334
Q ss_pred hhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Q 003047 272 SEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA 351 (854)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~ 351 (854)
-.+.-.|+... .+++... -++-|||.||. ..+.++.|+.++.+++.+-
T Consensus 235 ~~aiq~y~eAv---kldP~f~-------dAYiNLGnV~k----------------------e~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 235 WLAIQHYEEAV---KLDPNFL-------DAYINLGNVYK----------------------EARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHHHhh---cCCCcch-------HHHhhHHHHHH----------------------HHhcchHHHHHHHHHHhcC
Confidence 44455555554 2333222 26777777773 3578899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 352 RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 352 ~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
|++..++-++|-+|+.+|..+-||.+|++++. .+|+ .+.+|+|||..+...|+..+|..+|.+||..
T Consensus 283 --pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------- 349 (966)
T KOG4626|consen 283 --PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------- 349 (966)
T ss_pred --CcchhhccceEEEEeccccHHHHHHHHHHHHh-cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh---------
Confidence 99999999999999999999999999999999 7995 6899999999999999999999999999999
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccee
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVH 511 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~ 511 (854)
.+..+.+++|||++|..+|+.++|...|.++++++|+.+.++.+||.++- +++
T Consensus 350 -------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k---qqg----------------- 402 (966)
T KOG4626|consen 350 -------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK---QQG----------------- 402 (966)
T ss_pred -------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH---hcc-----------------
Confidence 45678999999999999999999999999999999999999999998776 221
Q ss_pred eccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccc
Q 003047 512 VIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESS 591 (854)
Q Consensus 512 ~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~ 591 (854)
.+..|+.||+.||.+.|....
T Consensus 403 ----------------------------------------nl~~Ai~~YkealrI~P~fAd------------------- 423 (966)
T KOG4626|consen 403 ----------------------------------------NLDDAIMCYKEALRIKPTFAD------------------- 423 (966)
T ss_pred ----------------------------------------cHHHHHHHHHHHHhcCchHHH-------------------
Confidence 346799999999999999542
Q ss_pred cccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC
Q 003047 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN 671 (854)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~ 671 (854)
++.++|.++-++||
T Consensus 424 ------------------------------------------------------------------a~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 424 ------------------------------------------------------------------ALSNMGNTYKEMGD 437 (966)
T ss_pred ------------------------------------------------------------------HHHhcchHHHHhhh
Confidence 36789999999999
Q ss_pred HHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhc
Q 003047 672 PVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEEL 750 (854)
Q Consensus 672 ~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 750 (854)
-..|+.++.+++. .|...+++.+||.+|. ..|.+.+||..|+.+++ ++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-----DsGni~~AI~sY~~aLk--lk------------------------ 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYK-----DSGNIPEAIQSYRTALK--LK------------------------ 486 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-----ccCCcHHHHHHHHHHHc--cC------------------------
Confidence 9999999999987 8999999999999887 78999999999999994 22
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 751 NGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 751 ~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|+ .+.++-||+.++..--+|.+=-+-+++..++
T Consensus 487 --------------PD----------fpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 487 --------------PD----------FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred --------------CC----------CchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33 4667899998887777666655556665554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=303.06 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
-++.|+.++-....++++|.|.+.++|++.++|+++.++..++.+....++ +.++...+.+.++. .|
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~------~~~A~~~l~~l~~~-------~P 93 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGD------SDGAQKLLDRLSQL-------AP 93 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhh-------CC
Confidence 356699999999999999999999999999999999999999987765543 33455555555521 12
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
+. .. ++.. . ..... ........+.+|.++...|+|++|+++|+++++..++..+ ++
T Consensus 94 ~~------------~~-----~~~~-~---~~~~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~-la- 149 (1157)
T PRK11447 94 DS------------NA-----YRSS-R---TTMLL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELD-LA- 149 (1157)
T ss_pred CC------------hH-----HHHH-H---HHHHh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChH-HH-
Confidence 20 00 0000 0 00000 0112223467899999999999999999999986554332 11
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
...+..+....+++++|+. .|++++... ++. .........
T Consensus 150 --~~y~~~~~~~~g~~~~A~~---~L~~ll~~~----P~~-------------------------------~~~~~~LA~ 189 (1157)
T PRK11447 150 --VEYWRLVAKLPAQRPEAIN---QLQRLNADY----PGN-------------------------------TGLRNTLAL 189 (1157)
T ss_pred --HHHHHHHhhCCccHHHHHH---HHHHHHHhC----CCC-------------------------------HHHHHHHHH
Confidence 1122233345699999985 556665443 211 111122222
Q ss_pred hhhhhhh--hhhhhh-hhhhhhhh-----hccccCCCCCCCCCccchhhhh-----hhhcccchhHHHHHH---------
Q 003047 266 ALSRTLS--EETLED-DTVLALSS-----LEISGQNLTRPVGLSSNELSRT-----LVDRSISTVDLKLKL--------- 323 (854)
Q Consensus 266 ~~~~~~~--~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~l--------- 323 (854)
++ ...+ ++++.. +.+..... ..+-.+.+ ...+.....++.. .++.+.........+
T Consensus 190 ll-~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 190 LL-FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI-KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HH-HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH-hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 22 2222 334333 33321000 00000000 0000000000000 001111000001111
Q ss_pred ----HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH------
Q 003047 324 ----QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS------ 393 (854)
Q Consensus 324 ----~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a------ 393 (854)
...++.+++..|++++|++.+++++.++ |+++.+++.+|.+++.+|++++|+.+|+++++ .+|....
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~-~~p~~~~~~~~~~ 344 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALA-LDPHSSNRDKWES 344 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCccchhHHHH
Confidence 1244788999999999999999999999 99999999999999999999999999999998 5664221
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 394 -------MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 394 -------~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
.....+|.++.+.|++++|+.+|++++.. .|.+..+++++|.++...|++++|+++|
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 12235689999999999999999999998 3456788999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 003047 467 QKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++++++|+++.+|..++.++.
T Consensus 409 ~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 409 QQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999998875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-27 Score=290.21 Aligned_cols=336 Identities=20% Similarity=0.146 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++.++...|++++|+..+++++... |++..+++.+|.+++..|++++|+.++.+++. ..|. ...++..++.++.
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~ 340 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILK-YAPN-SHQARRLLASIQL 340 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHH
Confidence 446777888899999999999999999 99999999999999999999999999999998 6774 4667778999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
..|++++|+..|++++.. .+.+...++.+|.++...|++++|+++|++++.+.|+++.+|..+|
T Consensus 341 ~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGL----------------DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred HCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999998886 2345678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.++.. .+ ..+.|+.+|+.++
T Consensus 405 ~~~~~---~~---------------------------------------------------------~~~~A~~~~~~a~ 424 (899)
T TIGR02917 405 ISKLS---QG---------------------------------------------------------DPSEAIADLETAA 424 (899)
T ss_pred HHHHh---CC---------------------------------------------------------ChHHHHHHHHHHH
Confidence 88772 11 1245777777777
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|....... .+... ....|+..+. + ....
T Consensus 425 ~~~~~~~~~~~----~l~~~---------------------------------~~~~~~~~~A--------~----~~~~ 455 (899)
T TIGR02917 425 QLDPELGRADL----LLILS---------------------------------YLRSGQFDKA--------L----AAAK 455 (899)
T ss_pred hhCCcchhhHH----HHHHH---------------------------------HHhcCCHHHH--------H----HHHH
Confidence 77766432100 00000 0011111110 0 0000
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.+....+. ....+..+|.++...|++.+|+.++++++. .|....++..+|.+| ...|++++|+.++++.+.
T Consensus 456 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~~- 527 (899)
T TIGR02917 456 KLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID-----IQEGNPDDAIQRFEKVLT- 527 (899)
T ss_pred HHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH-
Confidence 00000000 113467789999999999999999999997 788888888777755 468999999999999982
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. ....+..++.++...|++++|...+++
T Consensus 528 -~~--------------------------------------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 528 -ID--------------------------------------PK----------NLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred -hC--------------------------------------cC----------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 22 466788899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 804 ALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 804 Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
++...|++......++.++...|++++|+.++++ ....|.++.
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 9999999998899999999999999999999998 555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-27 Score=288.53 Aligned_cols=462 Identities=19% Similarity=0.152 Sum_probs=338.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.+..+..+...|++++|++.+++++...|.++.+++.+|.+++..+ ++.++...+.+.+..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~a~~~------------- 494 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG------DLAKAREAFEKALSI------------- 494 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC------CHHHHHHHHHHHHhh-------------
Confidence 3445778889999999999999999999999999999998877544 345577777776631
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+|++...++++|.++...|++++|+++|++++...+... .++.
T Consensus 495 --------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 537 (899)
T TIGR02917 495 --------------------------------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-----RAIL 537 (899)
T ss_pred --------------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-----HHHH
Confidence 345667899999999999999999999999998544322 3577
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
.++.+|...|++++|+ ..+++++... ++. .
T Consensus 538 ~l~~~~~~~~~~~~A~---~~~~~~~~~~----~~~------------------------------~------------- 567 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAV---AWLEKAAELN----PQE------------------------------I------------- 567 (899)
T ss_pred HHHHHHHHcCCHHHHH---HHHHHHHHhC----ccc------------------------------h-------------
Confidence 7889999999999998 4667776553 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
...+..+.+|...|++++|++.+++++.
T Consensus 568 ----------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 568 ----------------------------------------------------EPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred ----------------------------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111235566677888888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
.. |+++.+++.+|.++...|++++|+++|++++. ..|. .+.++..+|.+|...|++++|+.+|++++..
T Consensus 596 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 664 (899)
T TIGR02917 596 AA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA-LQPD-SALALLLLADAYAVMKNYAKAITSLKRALEL------- 664 (899)
T ss_pred cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 87 88888888888888888888888888888877 5663 4567777888888888888888888888776
Q ss_pred CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccc
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVK 509 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~ 509 (854)
.+....+++.++.++...|++++|+..++++....|+.+..|..+|.++. ..+
T Consensus 665 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g--------------- 717 (899)
T TIGR02917 665 ---------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL---RQK--------------- 717 (899)
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHH---HCC---------------
Confidence 23445677777888888888888888888888888888888888877766 210
Q ss_pred eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccc
Q 003047 510 VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESE 589 (854)
Q Consensus 510 ~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~ 589 (854)
.++.|...|+.++...|.... .. .++..
T Consensus 718 ------------------------------------------~~~~A~~~~~~~~~~~~~~~~-~~----~l~~~----- 745 (899)
T TIGR02917 718 ------------------------------------------DYPAAIQAYRKALKRAPSSQN-AI----KLHRA----- 745 (899)
T ss_pred ------------------------------------------CHHHHHHHHHHHHhhCCCchH-HH----HHHHH-----
Confidence 124466666666666555311 00 00000
Q ss_pred cccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHc
Q 003047 590 SSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEM 669 (854)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~l 669 (854)
....|+..+... ..++++. ..+.. ..++..+|.++...
T Consensus 746 ----------------------------~~~~g~~~~A~~-~~~~~l~-----------~~~~~--~~~~~~la~~~~~~ 783 (899)
T TIGR02917 746 ----------------------------LLASGNTAEAVK-TLEAWLK-----------THPND--AVLRTALAELYLAQ 783 (899)
T ss_pred ----------------------------HHHCCCHHHHHH-HHHHHHH-----------hCCCC--HHHHHHHHHHHHHC
Confidence 001122111110 0011110 00000 13466788999999
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
|++.+|+.++++++. .|+++..+..++.+|. ..|+ .+|+..+++++. ..
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~-~~A~~~~~~~~~--~~---------------------- 833 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-----ELKD-PRALEYAEKALK--LA---------------------- 833 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hcCc-HHHHHHHHHHHh--hC----------------------
Confidence 999999999999997 7888888888887554 6888 889999999993 21
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKS 828 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~ 828 (854)
|. .+..+.++|.++..+|++++|.++++++++..|.++.+...++.++.+.|++
T Consensus 834 ----------------~~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 834 ----------------PN----------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887 (899)
T ss_pred ----------------CC----------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence 22 3456788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003047 829 QEALAKLKY 837 (854)
Q Consensus 829 ~eA~~~lk~ 837 (854)
++|.+++++
T Consensus 888 ~~A~~~~~~ 896 (899)
T TIGR02917 888 AEARKELDK 896 (899)
T ss_pred HHHHHHHHH
Confidence 999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=285.31 Aligned_cols=436 Identities=17% Similarity=0.133 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..+..+...|..+|..|+|++|++.|++++.+.|+ +..+.|+|.|++..+ ++.+++..+.++++
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~------~~~~Ai~~~~~al~--------- 188 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALG------DWEKVVEDTTAALE--------- 188 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC------CHHHHHHHHHHHHH---------
Confidence 34667889999999999999999999999999995 889999999988654 45568888888773
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+ +|++...|+++|.+|..+|+|++|+..|.++..+ .+.....
T Consensus 189 -----------------------------------l-~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~-~~~~~~~- 230 (615)
T TIGR00990 189 -----------------------------------L-DPDYSKALNRRANAYDGLGKYADALLDLTASCII-DGFRNEQ- 230 (615)
T ss_pred -----------------------------------c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccHH-
Confidence 1 5667889999999999999999999999877663 3333221
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
...++.-+.. ..+. ..++..+... +.. .| ..
T Consensus 231 ---~~~~~~~~l~----~~a~---~~~~~~l~~~----~~~----------------~~------------~~------- 261 (615)
T TIGR00990 231 ---SAQAVERLLK----KFAE---SKAKEILETK----PEN----------------LP------------SV------- 261 (615)
T ss_pred ---HHHHHHHHHH----HHHH---HHHHHHHhcC----CCC----------------CC------------CH-------
Confidence 1111111111 1121 1222222221 000 00 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
..+|.. +.....+.+.+.+
T Consensus 262 --------------------------------------~~~~~~-----------------------~~~~~~~~~~~~~ 280 (615)
T TIGR00990 262 --------------------------------------TFVGNY-----------------------LQSFRPKPRPAGL 280 (615)
T ss_pred --------------------------------------HHHHHH-----------------------HHHccCCcchhhh
Confidence 000000 0000111122233
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEY---ARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~---~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
....+.+ |.....++.+|..+. ..++|++|+++|++++.. ..| ..+.+++++|.+|..+|++++|+.+|+++
T Consensus 281 ~~~~~~~--~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELD--EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccc--cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455 555556666665543 357899999999999973 245 45778999999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCC
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPG 499 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~ 499 (854)
+.+ .|.....|+++|.++...|++++|+.+|++++.++|+++.+|+.+|.++.. .+
T Consensus 358 l~l----------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~---~g----- 413 (615)
T TIGR00990 358 IEL----------------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI---KG----- 413 (615)
T ss_pred HHc----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cC-----
Confidence 998 344567899999999999999999999999999999999999999998872 10
Q ss_pred CCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCC
Q 003047 500 RSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGL 579 (854)
Q Consensus 500 ~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~ 579 (854)
.++.|+.+|++|+.+.|....
T Consensus 414 ----------------------------------------------------~~~~A~~~~~kal~l~P~~~~------- 434 (615)
T TIGR00990 414 ----------------------------------------------------EFAQAGKDYQKSIDLDPDFIF------- 434 (615)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHcCccCHH-------
Confidence 246799999999999887431
Q ss_pred CCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHH
Q 003047 580 PSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALL 659 (854)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l 659 (854)
++
T Consensus 435 ------------------------------------------------------------------------------~~ 436 (615)
T TIGR00990 435 ------------------------------------------------------------------------------SH 436 (615)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 24
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhh
Q 003047 660 ANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQ 738 (854)
Q Consensus 660 ~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~ 738 (854)
..+|.++..+|++.+|+..+++++. .|.++..+..+|.+| ..+|++++|+.+|++++. .+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~Al~--l~------------ 497 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL-----LDQNKFDEAIEKFDTAIE--LE------------ 497 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHccCHHHHHHHHHHHHh--cC------------
Confidence 5678899999999999999999997 888899998887755 468999999999999993 22
Q ss_pred hhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 739 WRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM-QGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 739 ~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~-~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
|. ..+. ......+++.+.++.. +|++++|++++++++.++|++..++..
T Consensus 498 --------------------------p~-~~~~---~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 498 --------------------------KE-TKPM---YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred --------------------------Cc-cccc---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 10 0000 0123334455555544 699999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 003047 818 AIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~ 837 (854)
++.+++++|++++|+..+++
T Consensus 548 la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999987
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-25 Score=283.85 Aligned_cols=563 Identities=13% Similarity=0.075 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
..+..|..++..|+|++|++.|+++++.+|.++..-.. ++..-...+.+..+++..+++.+..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~-----y~~~~~~~~g~~~~A~~~L~~ll~~------------ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVE-----YWRLVAKLPAQRPEAINQLQRLNAD------------ 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHH-----HHHHHhhCCccHHHHHHHHHHHHHh------------
Confidence 45778888999999999999999999999988743211 1111111234555677777776631
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---------
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI--------- 179 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~--------- 179 (854)
+|++..+++.+|.+++..|++++|+.+|+++...-...
T Consensus 177 ---------------------------------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 177 ---------------------------------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred ---------------------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 46677899999999999999999999999986532100
Q ss_pred ------------------------chhh--HHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 180 ------------------------DETT--ALQ--------------ICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 180 ------------------------~e~~--~~~--------------~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+... +.. ....++.+++..|++++|+ ..|++++.+.
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~---~~l~~aL~~~- 299 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAI---PELQQAVRAN- 299 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHH---HHHHHHHHhC-
Confidence 0000 000 0013367788899999997 5678887664
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhccccCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT---LSEETLEDDTVLALSSLEISGQNLTR 296 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (854)
++. ...+...+ .+... ..++.-.|...+ ...+....
T Consensus 300 ---P~~-------------------------------~~a~~~Lg-~~~~~~g~~~eA~~~l~~Al---~~~p~~~~--- 338 (1157)
T PRK11447 300 ---PKD-------------------------------SEALGALG-QAYSQQGDRARAVAQFEKAL---ALDPHSSN--- 338 (1157)
T ss_pred ---CCC-------------------------------HHHHHHHH-HHHHHcCCHHHHHHHHHHHH---HhCCCccc---
Confidence 111 11122222 22322 223333444443 11110000
Q ss_pred CCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHH
Q 003047 297 PVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKA 376 (854)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kA 376 (854)
.+. .... .......+.+..+.+++..|++++|++.+++++.++ |++..+++.+|.++...|++++|
T Consensus 339 --------~~~-~~~l---l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 339 --------RDK-WESL---LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred --------hhH-HHHH---HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 000 0000 000011123345778899999999999999999999 99999999999999999999999
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
+++|+++++ .+|. +..++.+++.+|.. +++++|+.++++.....+. +.. ....-....+..+|.++..
T Consensus 405 ~~~y~~aL~-~~p~-~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~--------~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 405 ERYYQQALR-MDPG-NTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDD--------IERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHH--------HHHHhhhhHHHHHHHHHHH
Confidence 999999999 7884 57788889988854 5788888887664332110 000 0000112456678888888
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCC
Q 003047 456 CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDS 535 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~ 535 (854)
.|++++|+.+|+++++++|+++.+++.+|.++...++. ++ ++ ..+ .+.+.+.+..+.. .+..
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~---~~---------A~-~~l----~~al~~~P~~~~~-~~a~ 535 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR---SQ---------AD-ALM----RRLAQQKPNDPEQ-VYAY 535 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HH---------HH-HHH----HHHHHcCCCCHHH-HHHH
Confidence 88888888888888888888888888888888742221 11 00 000 0001111111000 0000
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccc
Q 003047 536 PEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGL 615 (854)
Q Consensus 536 ~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (854)
+ .........++|..+|+.+..-....... .+ ..++.. ......
T Consensus 536 --a------l~l~~~~~~~~Al~~l~~l~~~~~~~~~~----------~l---------------~~~l~~---~~~l~~ 579 (1157)
T PRK11447 536 --G------LYLSGSDRDRAALAHLNTLPRAQWNSNIQ----------EL---------------AQRLQS---DQVLET 579 (1157)
T ss_pred --H------HHHHhCCCHHHHHHHHHhCCchhcChhHH----------HH---------------HHHHhh---hHHHHH
Confidence 0 00000113455666665432111000000 00 000000 000000
Q ss_pred cc-cccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHH
Q 003047 616 GQ-VTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYI 693 (854)
Q Consensus 616 ~~-~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~ 693 (854)
+. +...|+..+.. +++. ..+. ...++..+|.++...|++.+|+.+++++++ .|+++.++.
T Consensus 580 a~~l~~~G~~~eA~-----~~l~-----------~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 580 ANRLRDSGKEAEAE-----ALLR-----------QQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHHHCCCHHHHH-----HHHH-----------hCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 00 01122211110 0000 0001 113466789999999999999999999998 888999988
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCc
Q 003047 694 FLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKP 773 (854)
Q Consensus 694 ~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~ 773 (854)
.++.+|. ..|++++|+.+|+..+. .+ |.
T Consensus 642 ~la~~~~-----~~g~~~eA~~~l~~ll~--~~--------------------------------------p~------- 669 (1157)
T PRK11447 642 GLIEVDI-----AQGDLAAARAQLAKLPA--TA--------------------------------------ND------- 669 (1157)
T ss_pred HHHHHHH-----HCCCHHHHHHHHHHHhc--cC--------------------------------------CC-------
Confidence 8877554 68999999999998772 11 22
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 774 EEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST------EATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 774 ~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~------~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
.+..+..+|.++..+|++++|.+++++++...|+.+ .++...+.++.+.|++++|+..+++.
T Consensus 670 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 ---SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678899999999999999999999999876553 34445678888999999999999883
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-24 Score=264.50 Aligned_cols=260 Identities=12% Similarity=0.006 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccccccee
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYL 521 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l 521 (854)
...+|+++|.++.. +++++|+.+|.+++...|++ |.+++..+... ..+..++ ++ ..++++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~---~~~L~lA~al~-~~Gr~ee---------Ai------~~~rka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA---WQHRAVAYQAY-QVEDYAT---------AL------AAWQKI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---HHHHHHHHHHH-HCCCHHH---------HH------HHHHHH
Confidence 67899999999998 89999999999999999985 34554444321 2221111 00 001111
Q ss_pred eeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccc
Q 003047 522 VMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNH 601 (854)
Q Consensus 522 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (854)
...+.... .... -| ........++.|..+|++|+.+.|...... ..+...
T Consensus 536 ~~~~p~~~-a~~~--la------~all~~Gd~~eA~~~l~qAL~l~P~~~~l~----~~La~~----------------- 585 (987)
T PRK09782 536 SLHDMSNE-DLLA--AA------NTAQAAGNGAARDRWLQQAEQRGLGDNALY----WWLHAQ----------------- 585 (987)
T ss_pred hccCCCcH-HHHH--HH------HHHHHCCCHHHHHHHHHHHHhcCCccHHHH----HHHHHH-----------------
Confidence 11110000 0000 00 011123357889999999999887754210 000000
Q ss_pred cccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 602 KSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARS 681 (854)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~ 681 (854)
....|+..++.. ..++++. +.|. ...+.++|.++..+|++.+|+.++++
T Consensus 586 ----------------l~~~Gr~~eAl~-~~~~AL~--l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 586 ----------------RYIPGQPELALN-DLTRSLN--IAPS------------ANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred ----------------HHhCCCHHHHHH-HHHHHHH--hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000133222111 1111111 0111 24567888899999999999999999
Q ss_pred HHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCC
Q 003047 682 LLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNP 760 (854)
Q Consensus 682 lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 760 (854)
++. .|+++.++..+|. +|+.+|++++|+.+|++++. .+
T Consensus 635 AL~l~Pd~~~a~~nLG~-----aL~~~G~~eeAi~~l~~AL~--l~---------------------------------- 673 (987)
T PRK09782 635 ALELEPNNSNYQAALGY-----ALWDSGDIAQSREMLERAHK--GL---------------------------------- 673 (987)
T ss_pred HHHhCCCCHHHHHHHHH-----HHHHCCCHHHHHHHHHHHHH--hC----------------------------------
Confidence 887 7888888877776 55678999999999999883 21
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 761 SPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 761 ~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
|. .+.+++|||.++..+|++++|++++++++++.|+.+.+.+..+.++.+..+++.|.+.+++
T Consensus 674 ----P~----------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 674 ----PD----------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred ----CC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33 5778889999999999999999999999999999988888999999999999999988877
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=241.59 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=220.2
Q ss_pred hcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 334 TRNLKHAKREVKLAMNIA-RGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~-~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
.+.+++|++.++++++.. .+|+...++..+|.+++.+|++++|+..|++++. .+|. ....|.++|.+|..+|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~-~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPR-VTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 467889999999999863 1288889999999999999999999999999999 7884 577899999999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+.+|++++.. .+.+..+++++|.+++..|++++|+.+|++++.++|++..+|.++|.++. +
T Consensus 385 ~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~---~ 445 (615)
T TIGR00990 385 EEDFDKALKL----------------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY---K 445 (615)
T ss_pred HHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH---H
Confidence 9999999998 34567899999999999999999999999999999999999999998887 2
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+ .++.|+..|++++.+.|....
T Consensus 446 ~g---------------------------------------------------------~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 446 EG---------------------------------------------------------SIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred CC---------------------------------------------------------CHHHHHHHHHHHHHhCCCChH
Confidence 20 247799999999998887431
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
T Consensus 469 -------------------------------------------------------------------------------- 468 (615)
T TIGR00990 469 -------------------------------------------------------------------------------- 468 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHH-HHHHHHHHHh-cCCHHHHHHHHHhhhcCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLG-HIYAAEALCL-LNRPKEAAEHFSMYLSGGDNFDL 729 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la-~lY~aeAl~~-lgr~~eAl~~l~~~l~~~~~~~~ 729 (854)
++..+|.++..+|++.+|+..+++++. .|.....+..+. .+..+.++.. .|++++|+.++++++. .+
T Consensus 469 -----~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~--- 538 (615)
T TIGR00990 469 -----VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID--- 538 (615)
T ss_pred -----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC---
Confidence 245668899999999999999999998 555443333222 2222333333 6999999999999993 22
Q ss_pred CCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 730 PFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 730 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
|. ...++.+||.++..+|++++|++.|++++++.+
T Consensus 539 -----------------------------------p~----------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 -----------------------------------PE----------CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred -----------------------------------CC----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 22 355788899999999999999999999999987
Q ss_pred CCH
Q 003047 810 RST 812 (854)
Q Consensus 810 ~~~ 812 (854)
...
T Consensus 574 ~~~ 576 (615)
T TIGR00990 574 TEG 576 (615)
T ss_pred cHH
Confidence 653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-22 Score=229.67 Aligned_cols=569 Identities=16% Similarity=0.116 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPD---DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~---~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
-.|+.+|-..|++|+|-.|+.+|+++|.++|. |+.|-. | +++.. +....+ ++..+.++++. +
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g--~Cf~k-l~~~~~---a~~a~~ralqL-------d 229 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--G--HCFWK-LGMSEK---ALLAFERALQL-------D 229 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--h--hHHHh-ccchhh---HHHHHHHHHhc-------C
Confidence 35889999999999999999999999998777 443321 2 11111 112222 44444444421 1
Q ss_pred CCCC-CCCCCccc------CCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 105 TEGG-GNIGSKVG------LGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 105 ~~~~-~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
|... .-+|..+- ..+...|+..-+.+ ... +++|++++.-+|..||..|+|..+..+.+-++++.
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a-------y~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t- 300 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA-------YKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT- 300 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH-------Hhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-
Confidence 1100 00000000 01111111110000 122 67789999999999999999999999999999864
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhh
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLA 257 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (854)
..+.+....|+.++-.|..+|+|++|- .||.+++... ++. ...+
T Consensus 301 -~~~~~~aes~Y~~gRs~Ha~Gd~ekA~---~yY~~s~k~~----~d~----------------------------~~l~ 344 (1018)
T KOG2002|consen 301 -ENKSIKAESFYQLGRSYHAQGDFEKAF---KYYMESLKAD----NDN----------------------------FVLP 344 (1018)
T ss_pred -hhhHHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHccC----CCC----------------------------cccc
Confidence 334445567999999999999999997 6788777553 110 0111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhc--
Q 003047 258 ATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTR-- 335 (854)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~-- 335 (854)
-+...-..+.-..+-+...-|+.++. . . ++.-+ ....-+.+|...+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k----~---~---------------------p~~~e----tm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLK----Q---L---------------------PNNYE----TMKILGCLYAHSAKK 392 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHH----h---C---------------------cchHH----HHHHHHhHHHhhhhh
Confidence 11111112222334466677777762 1 0 00011 1112244555443
Q ss_pred --CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCH
Q 003047 336 --NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 336 --~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
..++|..-+.+++... |.+..+|+.+|.++....-+ .++.+|..++.. ..+ .++.++||+|+.|+.+|.+
T Consensus 393 ~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcCh
Confidence 6688999999999999 99999999999988765544 448888888852 223 4688999999999999999
Q ss_pred HHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|...|.+|+..... .....+ .......-||+|.++...++++.|.+.|..++...|....++.+|| |+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~-------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~--~m 539 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEG-------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG--CM 539 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCcccc-------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh--HH
Confidence 9999999999997331 111000 1123457899999999999999999999999999999999999999 33
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
...+. .+.+|...++.+|..+.
T Consensus 540 a~~k~----------------------------------------------------------~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 540 ARDKN----------------------------------------------------------NLYEASLLLKDALNIDS 561 (1018)
T ss_pred HHhcc----------------------------------------------------------CcHHHHHHHHHHHhccc
Confidence 11111 11223444444444443
Q ss_pred CCcccccccC-CCCCCcccccccccccccccccccccccc-cccccccccccc-----cCCCcccccCCchhHHHhhhcc
Q 003047 569 YPDLNYSKFG-LPSNSSVEESESSEGASSKNLNHKSLSSL-DSKISVGLGQVT-----ANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 569 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
..+.+++-.+ +++.-.... .+.--+.+++.. +.+. +.=...++|.+. ..-+.++..-.-..+ ++.
T Consensus 562 ~np~arsl~G~~~l~k~~~~---~a~k~f~~i~~~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K----Alq 633 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWK---PAKKKFETILKK-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK----ALQ 633 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhc---ccccHHHHHHhh-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH----HHH
Confidence 3333222111 111000000 000000000000 0000 000111333211 001101000001112 223
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.+..+-...+.+|.+ -..+|-|+-.-|++.+|+.++.++.+ ..+++++|.++||+|. .+|+|-.|++.|+.+
T Consensus 634 ~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~-----e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 634 LYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV-----EQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH-----HHHHHHHHHHHHHHH
Confidence 333333334455554 45678899999999999999999998 4558999999999887 479999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
++. | ++.+ +..+..-||.++...|.|.+|.+.
T Consensus 707 lkk-----------------------f---------------------~~~~----~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 707 LKK-----------------------F---------------------YKKN----RSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHH-----------------------h---------------------cccC----CHHHHHHHHHHHHHhhhHHHHHHH
Confidence 942 0 0111 355556699999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 003047 801 VTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 801 ~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
+-.|+.+.|.++.+.++.+.+.
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHH
Confidence 9999999999998888888885
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-21 Score=235.98 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
++.++|+++...|++.+|+.+++++++ .|.++.++.++|.+| ..+|++++|+.+|++++. .+
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-----~~lGd~~eA~~~l~~Al~--l~---------- 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-----QRLDDMAATQHYARLVID--DI---------- 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHh--cC----------
Confidence 477899999999999999999999998 899999999999855 579999999999999993 32
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
|. .+....-.|.+...+.+++.|.+.+.++....|+.. +-.
T Consensus 708 ----------------------------P~----------~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~ 748 (987)
T PRK09782 708 ----------------------------DN----------QALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGL 748 (987)
T ss_pred ----------------------------CC----------CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hcc
Confidence 32 466677899999999999999999999999999987 555
Q ss_pred HHHHHHHhcCCHH
Q 003047 817 TAIYVDLMLGKSQ 829 (854)
Q Consensus 817 l~~y~~L~~G~~~ 829 (854)
..+-+++..+++-
T Consensus 749 ~~g~~~~~~~~~~ 761 (987)
T PRK09782 749 RSGAMSTANNNVG 761 (987)
T ss_pred ccchHhhhccccc
Confidence 5555666666653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-21 Score=230.58 Aligned_cols=281 Identities=14% Similarity=0.083 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
.+-.-+..++++|++++|+.+++.++...|.++.++++++++....+ ++.+++..+.+.+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g------~~~~A~~~l~~~l~~------------ 105 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASS------QPDAVLQVVNKLLAV------------ 105 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcC------CHHHHHHHHHHHHHh------------
Confidence 35556788899999999999999999999999999999999988644 344577777776631
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
+|+++.+++++|.++...|++++|++.|+++++..+...+ +.
T Consensus 106 ---------------------------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~-----a~ 147 (656)
T PRK15174 106 ---------------------------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ-----IF 147 (656)
T ss_pred ---------------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HH
Confidence 5667889999999999999999999999999996444322 57
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
..++.+|...|++++|+..+ ++..... ++.
T Consensus 148 ~~la~~l~~~g~~~eA~~~~---~~~~~~~----P~~------------------------------------------- 177 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLA---RTQAQEV----PPR------------------------------------------- 177 (656)
T ss_pred HHHHHHHHHCCChHHHHHHH---HHHHHhC----CCC-------------------------------------------
Confidence 77899999999999998644 4443322 100
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
.+ ... ....++..|++++|...+++++
T Consensus 178 ------------------------------------------------~~----a~~-~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 178 ------------------------------------------------GD----MIA-TCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred ------------------------------------------------HH----HHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 0123667899999999999999
Q ss_pred HhcCCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhc
Q 003047 349 NIARGK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT----SSVFLSKALSNS 423 (854)
Q Consensus 349 ~~~~~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e----Ai~~f~kAL~~~ 423 (854)
..+ | ++......++.++...|++++|+..|.+++. .+|+ .+.+++++|.+|..+|++++ |+.+|++++..
T Consensus 205 ~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 205 PFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALA-RGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred hcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 987 6 4455556778999999999999999999999 7885 57899999999999999986 89999999998
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|....++.++|.++...|++++|+.+|++++.++|+++.+|..+|.++.
T Consensus 280 ---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 280 ---------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred ---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999998877
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=231.30 Aligned_cols=341 Identities=13% Similarity=0.003 Sum_probs=275.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 003047 149 KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSM 228 (854)
Q Consensus 149 ~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~ 228 (854)
..-.+.-..+.|++++|+..++.++...+.-.+ +..+++......|++++|+. .|++++.+. |+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-----~l~~l~~~~l~~g~~~~A~~---~l~~~l~~~----P~~--- 109 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-----LLRRWVISPLASSQPDAVLQ---VVNKLLAVN----VCQ--- 109 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-----HHHHHhhhHhhcCCHHHHHH---HHHHHHHhC----CCC---
Confidence 334477789999999999999999997665444 46777788888999999984 667776553 111
Q ss_pred ccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhh
Q 003047 229 GQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRT 308 (854)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (854)
T Consensus 110 -------------------------------------------------------------------------------- 109 (656)
T PRK15174 110 -------------------------------------------------------------------------------- 109 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC
Q 003047 309 LVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 309 ~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d 388 (854)
...++..+.+|..+|++++|+..+++++.++ |+++.++..+|.++...|++++|+..+.+++. ..
T Consensus 110 ------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~ 174 (656)
T PRK15174 110 ------------PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EV 174 (656)
T ss_pred ------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hC
Confidence 0022335778889999999999999999999 99999999999999999999999999999988 67
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|. .+.++..++ .+...|++++|+..|++++...+ .........+|.++...|++++|+..|++
T Consensus 175 P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 175 PP-RGDMIATCL-SFLNKSRLPEDHDLARALLPFFA---------------LERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred CC-CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---------------CcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 74 466666554 58899999999999999988621 11223445678999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCC
Q 003047 469 SSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ 548 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~ 548 (854)
++.+.|+++.+|+.||.++...++. ++
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~---~e-------------------------------------------------- 264 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRS---RE-------------------------------------------------- 264 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCc---hh--------------------------------------------------
Confidence 9999999999999999998831110 00
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccccc
Q 003047 549 PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQK 628 (854)
Q Consensus 549 ~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 628 (854)
-...|..+|++|+.+.|+...
T Consensus 265 ---A~~~A~~~~~~Al~l~P~~~~-------------------------------------------------------- 285 (656)
T PRK15174 265 ---AKLQAAEHWRHALQFNSDNVR-------------------------------------------------------- 285 (656)
T ss_pred ---hHHHHHHHHHHHHhhCCCCHH--------------------------------------------------------
Confidence 013599999999999998431
Q ss_pred CCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhc
Q 003047 629 GGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 629 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~l 707 (854)
++..+|.++..+|++.+|+.++++++. .|+++.++..+|. ++..+
T Consensus 286 -----------------------------a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~-----~l~~~ 331 (656)
T PRK15174 286 -----------------------------IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR-----ALRQV 331 (656)
T ss_pred -----------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----HHHHC
Confidence 255779999999999999999999998 7888888877776 45579
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|++++|+.+|++.+. .+ |. .+..+..+|.+
T Consensus 332 G~~~eA~~~l~~al~--~~--------------------------------------P~----------~~~~~~~~a~a 361 (656)
T PRK15174 332 GQYTAASDEFVQLAR--EK--------------------------------------GV----------TSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHH--hC--------------------------------------cc----------chHHHHHHHHH
Confidence 999999999999882 11 32 34556668999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 788 FAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
+...|++++|+++|++++++.|++.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-20 Score=227.80 Aligned_cols=395 Identities=13% Similarity=-0.014 Sum_probs=288.3
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
+..+..+.++|.++..+|++++|+++|+++++..+...+ +.+.++.++...|++++|+. .+++++...
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----a~~~la~~l~~~g~~~eA~~---~l~~~l~~~---- 113 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----YQRGLILTLADAGQYDEALV---KAKQLVSGA---- 113 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHCCCHHHHHH---HHHHHHHhC----
Confidence 345667999999999999999999999999995443333 35678889999999999984 567666442
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
++.
T Consensus 114 P~~----------------------------------------------------------------------------- 116 (765)
T PRK10049 114 PDK----------------------------------------------------------------------------- 116 (765)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLA 382 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~k 382 (854)
. . .+..+.++..+|+.++|+..+++++.+. |+++.+++.+|.++...+..++|++.+++
T Consensus 117 --------------~----~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 117 --------------A----N-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred --------------H----H-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 0 0 2224778888999999999999999999 99999999999999999999999999998
Q ss_pred hhhccCCCc-c---HHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 383 LSNRTEMGI-S---SMFNNNLGCIYY-----QLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 383 al~~~dp~~-~---a~~~nnLG~iy~-----~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
+.. .|.. . ......+..++. ..+++ ++|+..|+++++..+..... .+....+.....
T Consensus 176 ~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~---------~~~~~~a~~d~l 244 (765)
T PRK10049 176 ANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA---------TADYQRARIDRL 244 (765)
T ss_pred CCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc---------chHHHHHHHHHH
Confidence 775 3321 0 001111222222 22345 78899999988763211100 011123333323
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCC
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFY---KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGF 527 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P---~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~ 527 (854)
..++..|++++|+..|+++++..| +++..| +|..++ ..+
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl---~~g--------------------------------- 286 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYL---KLH--------------------------------- 286 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHH---hcC---------------------------------
Confidence 455788999999999999999864 444445 466555 210
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccc
Q 003047 528 RKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSL 607 (854)
Q Consensus 528 ~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (854)
..+.|+.+|++++...|......
T Consensus 287 ------------------------~~e~A~~~l~~~l~~~p~~~~~~--------------------------------- 309 (765)
T PRK10049 287 ------------------------QPEKAQSILTELFYHPETIADLS--------------------------------- 309 (765)
T ss_pred ------------------------CcHHHHHHHHHHhhcCCCCCCCC---------------------------------
Confidence 13679999999887665531100
Q ss_pred cccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CC
Q 003047 608 DSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LP 686 (854)
Q Consensus 608 ~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p 686 (854)
. .....|++++++.|++.+|+..++++.. .|
T Consensus 310 ----------------------------~--------------------~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 310 ----------------------------D--------------------EELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ----------------------------h--------------------HHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 0 1134567788999999999999999997 45
Q ss_pred CCh----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCC
Q 003047 687 DCS----------RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAA 756 (854)
Q Consensus 687 ~~~----------~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 756 (854)
+.. ......+.+..+.++...|++++|+++|++++. .
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~------------------------------- 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--N------------------------------- 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-------------------------------
Confidence 321 111223344556677789999999999999993 1
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003047 757 AKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLK 836 (854)
Q Consensus 757 ~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk 836 (854)
.|. ++.+++++|.++..+|++++|++++++++++.|+++.+...++++.+++|++++|..+++
T Consensus 389 -------~P~----------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 389 -------APG----------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred -------CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 143 578899999999999999999999999999999999999999999999999999999999
Q ss_pred h-cCCCcccccccccc
Q 003047 837 Y-CNHVRFLPSGLQLS 851 (854)
Q Consensus 837 ~-~~~~~~~~~~~~~~ 851 (854)
+ ....|.+|...+|.
T Consensus 452 ~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 452 DVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHhCCCCHHHHHHH
Confidence 9 88889888776653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-18 Score=209.92 Aligned_cols=420 Identities=13% Similarity=-0.007 Sum_probs=298.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcc
Q 003047 36 LYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKV 115 (854)
Q Consensus 36 ~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (854)
...-.|++++|++.|.++...+|..+.++.++|.++...+ ++.+++..+.+.+..
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g------~~~~A~~~~~~al~~------------------- 78 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK------QWQNSLTLWQKALSL------------------- 78 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHh-------------------
Confidence 3447899999999999999999999999999998876443 455677777777731
Q ss_pred cCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHH
Q 003047 116 GLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVA 195 (854)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy 195 (854)
+|+++.+++++|.++...|++++|+.+++++++..+...+ .+.++.+|
T Consensus 79 --------------------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~------~~~la~~l 126 (765)
T PRK10049 79 --------------------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN------LLALAYVY 126 (765)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHH
Confidence 4667778999999999999999999999999995333222 56678999
Q ss_pred HHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhh
Q 003047 196 LACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEET 275 (854)
Q Consensus 196 ~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (854)
...|++++|+ ..+++++.+. ++.
T Consensus 127 ~~~g~~~~Al---~~l~~al~~~----P~~-------------------------------------------------- 149 (765)
T PRK10049 127 KRAGRHWDEL---RAMTQALPRA----PQT-------------------------------------------------- 149 (765)
T ss_pred HHCCCHHHHH---HHHHHHHHhC----CCC--------------------------------------------------
Confidence 9999999998 5678887664 111
Q ss_pred hhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC
Q 003047 276 LEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD 355 (854)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~ 355 (854)
....+..+.++...+..++|++.++++.. . |+
T Consensus 150 ---------------------------------------------~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~--p~ 181 (765)
T PRK10049 150 ---------------------------------------------QQYPTEYVQALRNNRLSAPALGAIDDANL-T--PA 181 (765)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHCCChHHHHHHHHhCCC-C--HH
Confidence 00122245666777888888888887665 4 54
Q ss_pred CHH-----HHHHHHHHHH-----HhcCH---HHHHHHHHHhhhc--cCCCccH---HHHHH-HHHHHHHcCCHHHHHHHH
Q 003047 356 SSL-----ALFLKSQLEY-----ARRNH---RKAIKLLLALSNR--TEMGISS---MFNNN-LGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 356 ~~~-----a~~lla~ly~-----~~g~~---~kAl~~l~kal~~--~dp~~~a---~~~nn-LG~iy~~~g~~~eAi~~f 416 (854)
... ....+..+++ ..+++ ++|++.|+++++. .+|...+ .+... +|.+ ...|++++|+..|
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~ 260 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 311 1122222222 23345 8899999998852 2342211 12222 4544 5779999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHh
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP----LLWLRLAECCLMALE 492 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~----~aw~~La~~~i~~~~ 492 (854)
+++++..+. .|.. +...+|.+|+.+|++++|+.+|++++...|.++ ..+..|+..+. .
T Consensus 261 ~~ll~~~~~-------------~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~---~ 322 (765)
T PRK10049 261 QRLKAEGQI-------------IPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL---E 322 (765)
T ss_pred HHhhccCCC-------------CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH---h
Confidence 998876100 1222 233359999999999999999999999888763 34444444433 1
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
. ..+++|...|++++...|....
T Consensus 323 ~---------------------------------------------------------g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 323 S---------------------------------------------------------ENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred c---------------------------------------------------------ccHHHHHHHHHHHhhcCCceEe
Confidence 1 0247799999999988887432
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
.. . .. ... ++
T Consensus 346 ~~-----~---~~-----------------------------------~~~---------------------------p~ 355 (765)
T PRK10049 346 LY-----G---SP-----------------------------------TSI---------------------------PN 355 (765)
T ss_pred ec-----C---CC-----------------------------------CCC---------------------------CC
Confidence 10 0 00 000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPF 731 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~ 731 (854)
.....++..++.++...|++.+|+..+++++. .|+++..+..+|.+|. ..|++++|+..|++++. .+
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-----~~g~~~~A~~~l~~al~--l~----- 423 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-----ARGWPRAAENELKKAEV--LE----- 423 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHh--hC-----
Confidence 01112355678899999999999999999997 8999999988887665 68999999999999993 21
Q ss_pred CchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 732 SGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 732 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|. +..+++.+|.++..+|++++|++.++++++..|++
T Consensus 424 ---------------------------------Pd----------~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 424 ---------------------------------PR----------NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred ---------------------------------CC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 33 46788999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 812 TEATLTA 818 (854)
Q Consensus 812 ~~a~~l~ 818 (854)
+.+..+.
T Consensus 461 ~~~~~~~ 467 (765)
T PRK10049 461 PGVQRLA 467 (765)
T ss_pred HHHHHHH
Confidence 8655543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=196.10 Aligned_cols=294 Identities=15% Similarity=0.061 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
.......+..|+.+...|++++|+..|+++++.+|+++.+++.+|.+++..++ +.+++..+.+.+.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~-------- 97 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGE------VDRAIRIHQNLLS-------- 97 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCc------HHHHHHHHHHHhc--------
Confidence 44566778889999999999999999999999999999999999988775543 3345555544441
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
.++ ..+......++++|.+|...|+|++|+++|+++++. .+..
T Consensus 98 ~~~---------------------------------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~--- 140 (389)
T PRK11788 98 RPD---------------------------------LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFA--- 140 (389)
T ss_pred CCC---------------------------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-Ccch---
Confidence 111 012234567889999999999999999999999884 2221
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
..++..++.+|...|++++|++. +++.+... +.. . ..
T Consensus 141 -~~~~~~la~~~~~~g~~~~A~~~---~~~~~~~~----~~~--------------------~--------~~------- 177 (389)
T PRK11788 141 -EGALQQLLEIYQQEKDWQKAIDV---AERLEKLG----GDS--------------------L--------RV------- 177 (389)
T ss_pred -HHHHHHHHHHHHHhchHHHHHHH---HHHHHHhc----CCc--------------------c--------hH-------
Confidence 23577788999999999999854 45544322 000 0 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 264 ENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKRE 343 (854)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~e 343 (854)
....+....+.+|..+|++++|++.
T Consensus 178 -------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 178 -------------------------------------------------------EIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000122346678889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++++++.. |++..+++.+|.++...|++++|+++|++++. .+|.....+++.++.+|...|++++|+.+|++++...
T Consensus 203 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999 99999999999999999999999999999998 5675445678889999999999999999999999872
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
+ +...+..+|..+...|++++|+..|++++..+|+++.++..++..
T Consensus 280 ----------------p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 280 ----------------P-GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred ----------------C-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 2 224457899999999999999999999999999988665444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=193.39 Aligned_cols=306 Identities=16% Similarity=0.069 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNN 397 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~n 397 (854)
+...++++..++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+.++++++. ..+. ....+++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~ 111 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQ 111 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 3456678889999999999999999999999 99999999999999999999999999999988 3221 1235688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|.+|..+|++++|+.+|++++.. .+....++..++.++...|++++|++.|++++...|.+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDE----------------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcC----------------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8999999999999999999999986 234567888999999999999999999999999998764
Q ss_pred H-----HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 478 L-----LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 478 ~-----aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
. .|..+|.++. +. ..
T Consensus 176 ~~~~~~~~~~la~~~~---~~---------------------------------------------------------~~ 195 (389)
T PRK11788 176 RVEIAHFYCELAQQAL---AR---------------------------------------------------------GD 195 (389)
T ss_pred hHHHHHHHHHHHHHHH---hC---------------------------------------------------------CC
Confidence 3 3445555444 11 02
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|..+|++++.+.|....
T Consensus 196 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 215 (389)
T PRK11788 196 LDAARALLKKALAADPQCVR------------------------------------------------------------ 215 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHH------------------------------------------------------------
Confidence 47799999999988776321
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCC-hHHHHHHHHHHHHHHHHhcCCH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDC-SRIYIFLGHIYAAEALCLLNRP 710 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~-~~~~~~la~lY~aeAl~~lgr~ 710 (854)
++..+|.++...|++.+|+..+++++. .|.. ...+..++ .+++..|++
T Consensus 216 -------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~-----~~~~~~g~~ 265 (389)
T PRK11788 216 -------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM-----ECYQALGDE 265 (389)
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH-----HHHHHcCCH
Confidence 134568889999999999999999997 4443 23444444 466789999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH
Q 003047 711 KEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM 790 (854)
Q Consensus 711 ~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~ 790 (854)
++|+.++++.+. .+ |. . ..+..++.++..
T Consensus 266 ~~A~~~l~~~~~--~~--------------------------------------p~----------~-~~~~~la~~~~~ 294 (389)
T PRK11788 266 AEGLEFLRRALE--EY--------------------------------------PG----------A-DLLLALAQLLEE 294 (389)
T ss_pred HHHHHHHHHHHH--hC--------------------------------------CC----------c-hHHHHHHHHHHH
Confidence 999999999883 11 21 1 223779999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHh--cCCCccccc
Q 003047 791 QGEFERAHHFVTQALSILPRSTEATLTAIYVD-LM-LGKSQEALAKLKY--CNHVRFLPS 846 (854)
Q Consensus 791 ~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~-L~-~G~~~eA~~~lk~--~~~~~~~~~ 846 (854)
+|++++|...++++++..|++..+..+..... .. .|+.++++.++++ .+.+..+|.
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999876554443332 22 5699999998887 334455554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-16 Score=191.96 Aligned_cols=465 Identities=13% Similarity=-0.006 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.++..+.+|+..+++|+|+.|++.|+++++.+|.++...+.++.++... .++.+++..+++.+. +
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~------G~~~~A~~~~eka~~---------p 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA------GRDQEVIDVYERYQS---------S 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc------CCcHHHHHHHHHhcc---------C
Confidence 3557899999999999999999999999999999975555666555544 333446666666551 1
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
++.....+..+|.+|..+|+|++|+++|+++++..+...+
T Consensus 98 ------------------------------------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---- 137 (822)
T PRK14574 98 ------------------------------------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---- 137 (822)
T ss_pred ------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----
Confidence 1223345555688999999999999999999996554433
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
+++.++.+|...+++++|+. +++++.... ++ .
T Consensus 138 -~l~gLa~~y~~~~q~~eAl~---~l~~l~~~d----p~-------------------------------~--------- 169 (822)
T PRK14574 138 -LISGMIMTQADAGRGGVVLK---QATELAERD----PT-------------------------------V--------- 169 (822)
T ss_pred -HHHHHHHHHhhcCCHHHHHH---HHHHhcccC----cc-------------------------------h---------
Confidence 45667899999999999985 456554332 00 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 266 ALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVK 345 (854)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk 345 (854)
. ..+....++..+++..+|++.++
T Consensus 170 ---------------------------------------------------~-----~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 170 ---------------------------------------------------Q-----NYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred ---------------------------------------------------H-----HHHHHHHHHHhcchHHHHHHHHH
Confidence 0 00112233333566666999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Q 003047 346 LAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-----LAKYHTSSVFLSKAL 420 (854)
Q Consensus 346 ~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-----~g~~~eAi~~f~kAL 420 (854)
++++.+ |++..++..+..+....|-...|++...+-...-.+.+....-.....-..+ .....+.....+++|
T Consensus 194 kll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999999 9999999999999999999999999888755421111111111111111111 111223333444555
Q ss_pred Hhchhccc---CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccc
Q 003047 421 SNSASLRK---DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-QPLLWLRLAECCLMALEKGLV 496 (854)
Q Consensus 421 ~~~~~l~~---~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-~~~aw~~La~~~i~~~~~~~~ 496 (854)
.....+.. ..+- ..+..-.+....=.++...|++.++++.|+..-.-... -+.+....|..++. .+
T Consensus 272 a~~~~l~~~~~~~p~-----~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~---~~-- 341 (822)
T PRK14574 272 ADYQNLLTRWGKDPE-----AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID---RR-- 341 (822)
T ss_pred HHHHHHHhhccCCCc-----cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh---cC--
Confidence 54222110 0000 00111234456677888999999999999986644422 22344555666662 10
Q ss_pred CCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccc
Q 003047 497 APGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSK 576 (854)
Q Consensus 497 e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~ 576 (854)
..+.|...|+.++.-.|..... +
T Consensus 342 -------------------------------------------------------~P~kA~~l~~~~~~~~~~~~~~-~- 364 (822)
T PRK14574 342 -------------------------------------------------------LPEKAAPILSSLYYSDGKTFRN-S- 364 (822)
T ss_pred -------------------------------------------------------CcHHHHHHHHHHhhccccccCC-C-
Confidence 1155888888876655431110 0
Q ss_pred cCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHH
Q 003047 577 FGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQ 656 (854)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 656 (854)
-+ .
T Consensus 365 ---------------------------------------------~~---~----------------------------- 367 (822)
T PRK14574 365 ---------------------------------------------DD---L----------------------------- 367 (822)
T ss_pred ---------------------------------------------cc---h-----------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC------------Ch---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLE-LPD------------CS---RIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~------------~~---~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.....|-|++++.+++.+|.....++.. .|. ++ ..+..+ +..++..|++.+|.+.++..
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~-----a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL-----VQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH-----HHHHHHcCCHHHHHHHHHHH
Confidence 0123568899999999999999999997 441 11 233333 44566799999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
+. . .|. ++.++..+|.++..+|++.+|++.
T Consensus 443 ~~--~--------------------------------------aP~----------n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 443 SS--T--------------------------------------APA----------NQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HH--h--------------------------------------CCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 82 1 254 688899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccccccc
Q 003047 801 VTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSGLQL 850 (854)
Q Consensus 801 ~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~~~~ 850 (854)
++.++.+.|++..+...++++.+.+|++++|..++++ ....|.+|..-+|
T Consensus 473 ~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 473 LKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred HHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 9999999999999999999999999999999999988 8888888876553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-17 Score=176.63 Aligned_cols=438 Identities=17% Similarity=0.161 Sum_probs=301.1
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
-.+..+..|=-+|-.+|.+|+|++|+++|++++++.|+.|--+.|++-||-..+ ++.+-++...++++
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lg------d~~~Vied~TkALE------ 177 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLG------DWEKVIEDCTKALE------ 177 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHh------hHHHHHHHHHHHhh------
Confidence 345567777789999999999999999999999999999999999998877543 45556666666663
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
+ +|+-.-+++-.|.++-.+|++++|+.=. -++-+++...+
T Consensus 178 --------------------------------------l-~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n 217 (606)
T KOG0547|consen 178 --------------------------------------L-NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQN 217 (606)
T ss_pred --------------------------------------c-CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhccc
Confidence 2 5667779999999999999999998655 23333333322
Q ss_pred hhHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhcc-CCCCCCCcccc---cccchh
Q 003047 182 TTALQICLLLL-DVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKY-SSVPSNSSTAD---ASNSDL 256 (854)
Q Consensus 182 ~~~~~~~l~l~-~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~ 256 (854)
. ....++ .++..+++ .++- .-++-+++ ..+++.|. ++.| .|..+++.... .++++.
T Consensus 218 ~----s~~~~~eR~Lkk~a~-~ka~-------e~~k~nr~-----p~lPS~~f--i~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 218 A----SIEPMAERVLKKQAM-KKAK-------EKLKENRP-----PVLPSATF--IASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred c----hhHHHHHHHHHHHHH-HHHH-------HhhcccCC-----CCCCcHHH--HHHHHhhccccccccccCCCccchh
Confidence 2 111111 22222221 1111 11110000 01122110 0111 11111111100 001111
Q ss_pred hhhhhhhhhhhhhhhh-----------hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHH
Q 003047 257 AATVNASENALSRTLS-----------EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQL 325 (854)
Q Consensus 257 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l 325 (854)
... +.+..|..... +++..+.+.. ..|++ +. ..++......
T Consensus 279 -~l~-~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~------------------~~n~~-------d~-~le~~A~al~ 330 (606)
T KOG0547|consen 279 -ALA-EALEALEKGLEEGYLKAYDKATEECLGSESSL------------------SVNEI-------DA-ELEYMAEALL 330 (606)
T ss_pred -hHH-HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhc------------------ccccc-------ch-hHHHHHHHHH
Confidence 011 11222222211 2222222221 11111 11 1355566778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
+++-+++..|+...|.+.++.+|+++ |.+..-|+.+|.+|....+-++-.+.|+++.. .+|. ++.+|+..|.+++-
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~-ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAED-LDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHh-cCCC-CCchhHhHHHHHHH
Confidence 89999999999999999999999999 99999899999999999999999999999999 7995 67788899999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+++|++|+.-|+|++.+ .|.+...+..++.+++++++++++...|+.+...+|+-++++.--|+
T Consensus 407 L~q~e~A~aDF~Kai~L----------------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe 470 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISL----------------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE 470 (606)
T ss_pred HHHHHHHHHHHHHHhhc----------------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999 34567788899999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHh
Q 003047 486 CCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALH 565 (854)
Q Consensus 486 ~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~ 565 (854)
++.. +. .+..|.+.|+.|+.
T Consensus 471 iLtD---qq---------------------------------------------------------qFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 471 ILTD---QQ---------------------------------------------------------QFDKAVKQYDKAIE 490 (606)
T ss_pred HHhh---HH---------------------------------------------------------hHHHHHHHHHHHHh
Confidence 8772 10 13559999999999
Q ss_pred hcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhh
Q 003047 566 LLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYED 645 (854)
Q Consensus 566 L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~ 645 (854)
|.|..+.-+. |+ .|
T Consensus 491 LE~~~~~~~v---------------------------~~---------------------------------------~p 504 (606)
T KOG0547|consen 491 LEPREHLIIV---------------------------NA---------------------------------------AP 504 (606)
T ss_pred hccccccccc---------------------------cc---------------------------------------hh
Confidence 9999553110 00 00
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 646 VCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 646 ~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+.++. + .++...+|+..|+...+++++ +|.+--++--||.+- ++.|+++||++.|+.+.
T Consensus 505 lV~Ka-------~-----l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-----lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKA-------L-----LVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE-----LQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhh-------H-----hhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHH
Confidence 01111 1 134466999999999999998 888999998888754 57899999999999988
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=185.11 Aligned_cols=511 Identities=13% Similarity=0.034 Sum_probs=305.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGS 113 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (854)
|++....|+-+.|+..|+.+++++|+++.++--||++.... .+++.+..++..+.++... +...|+++|-+.+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~---~d~~s~~~~~~ll~~ay~~----n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF---NDSDSYKKGVQLLQRAYKE----NNENPVALNHLAN 278 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhh----cCCCcHHHHHHHH
Confidence 46666666666677777777777776666666666554433 3456666666666666532 1222222211111
Q ss_pred ccc-CCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHH
Q 003047 114 KVG-LGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLL 192 (854)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~ 192 (854)
-+. -+.....-..+--+.. ....++..+..+|++|..|..+|+|++|..+|.+.++.-+.. .+-..+-++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~-----~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~~Glg 349 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIK-----NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPLVGLG 349 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccccchh
Confidence 110 0000000000000000 011134467789999999999999999999999999854332 122467789
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhh
Q 003047 193 DVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLS 272 (854)
Q Consensus 193 ~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (854)
++|+..|++..|+ -.||+.+... ++ ... ..-.++-|+-..+
T Consensus 350 Qm~i~~~dle~s~---~~fEkv~k~~----p~--------------------~~e------------tm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 350 QMYIKRGDLEESK---FCFEKVLKQL----PN--------------------NYE------------TMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHhchHHHHH---HHHHHHHHhC----cc--------------------hHH------------HHHHHHhHHHhhh
Confidence 9999999999998 5788887664 11 111 1111222221111
Q ss_pred hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC
Q 003047 273 EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR 352 (854)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~ 352 (854)
.....-+ .+.+-+|-+.-.. +++. ..++-.+++|.+. +...++..+.+++.+-.
T Consensus 391 ~~~~~~d--------------------~a~~~l~K~~~~~---~~d~--~a~l~laql~e~~-d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 391 KKQEKRD--------------------KASNVLGKVLEQT---PVDS--EAWLELAQLLEQT-DPWASLDAYGNALDILE 444 (1018)
T ss_pred hhhHHHH--------------------HHHHHHHHHHhcc---cccH--HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 0000000 1112222222111 1111 2444557777764 55555888888885442
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 353 ---GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 353 ---~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
++=-++.+.++|-+++..|++.+|...+.+++.. .+++ .+....+|++.++-.+++++.|.+.|+.++.
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3555778899999999999999999999999984 1221 1123477899999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRS 501 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~ 501 (854)
. .|....++..+|...-..+...+|...+..++.++..+|.+|.-+|+++...... +.
T Consensus 525 e----------------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~------~~ 582 (1018)
T KOG2002|consen 525 E----------------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW------KP 582 (1018)
T ss_pred H----------------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh------cc
Confidence 8 3455678888886666778899999999999999999999999999998842222 11
Q ss_pred CCCCcccc------------eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 003047 502 LSDGSEVK------------VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNY 569 (854)
Q Consensus 502 ~~~~~~~~------------~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~ 569 (854)
.+.+-..+ .-.+|- .+..-...+ ++++ .......+.|..||.++|..+|.
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN-~~~~~l~~~--~rn~---------------ek~kk~~~KAlq~y~kvL~~dpk 644 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGN-VYIQALHNP--SRNP---------------EKEKKHQEKALQLYGKVLRNDPK 644 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhH-HHHHHhccc--ccCh---------------HHHHHHHHHHHHHHHHHHhcCcc
Confidence 11110000 001121 000000000 0000 00123478999999999999998
Q ss_pred CcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHH
Q 003047 570 PDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRR 649 (854)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~ 649 (854)
..-+ ..+++..+ ..+|...++.. .++.|+
T Consensus 645 N~yA----ANGIgiVL---------------------------------A~kg~~~~A~d------------IFsqVr-- 673 (1018)
T KOG2002|consen 645 NMYA----ANGIGIVL---------------------------------AEKGRFSEARD------------IFSQVR-- 673 (1018)
T ss_pred hhhh----ccchhhhh---------------------------------hhccCchHHHH------------HHHHHH--
Confidence 6532 22222222 12233222211 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 650 ENQMIKQALLANLAYVELEMENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 650 ~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
....-.+..|.|+|.|++++|+|..|+..|...+.. .+.+.... |+|+|+...|++.+|...+-+++
T Consensus 674 Ea~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~-----~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 674 EATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH-----YLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH-----HHHHHHHHhhhHHHHHHHHHHHH
Confidence 111112345889999999999999999999999962 23566664 45557888999999999999998
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-16 Score=172.86 Aligned_cols=397 Identities=15% Similarity=0.102 Sum_probs=279.6
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
+-+..+-|.|+=+|..|+|++||++|.+++.. .|.+.. -+.+....|...|++.+.+ ...-+++.+. +
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l-~p~epi----FYsNraAcY~~lgd~~~Vi---ed~TkALEl~----P 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL-CPDEPI----FYSNRAACYESLGDWEKVI---EDCTKALELN----P 180 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc-CCCCch----hhhhHHHHHHHHhhHHHHH---HHHHHHhhcC----c
Confidence 45667778899999999999999999999994 443332 2556778999999999987 4666788775 2
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh------hh--hhhhhhhhhhhhhhhcc--ccCC
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT------LS--EETLEDDTVLALSSLEI--SGQN 293 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~--~~~~ 293 (854)
+- . .+|.++ +| .+++.+-++ ++| ..++
T Consensus 181 ~Y------------------------------~--------KAl~RRA~A~E~lg~~~eal~D~tv-----~ci~~~F~n 217 (606)
T KOG0547|consen 181 DY------------------------------V--------KALLRRASAHEQLGKFDEALFDVTV-----LCILEGFQN 217 (606)
T ss_pred HH------------------------------H--------HHHHHHHHHHHhhccHHHHHHhhhH-----HHHhhhccc
Confidence 21 1 122222 22 333444344 233 2221
Q ss_pred CCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC-------------------
Q 003047 294 LTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGK------------------- 354 (854)
Q Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P------------------- 354 (854)
..+...--|++-.++.. ++.+-++ .++-|
T Consensus 218 ---------------------------~s~~~~~eR~Lkk~a~~-ka~e~~k----~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 218 ---------------------------ASIEPMAERVLKKQAMK-KAKEKLK----ENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred ---------------------------chhHHHHHHHHHHHHHH-HHHHhhc----ccCCCCCCcHHHHHHHHhhccccc
Confidence 12333333444443332 2333333 11101
Q ss_pred --------CCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhc--cCCCcc---------HHHHHHHHHHHHHcCCHHHH
Q 003047 355 --------DSSLALFLKSQLEYARR---NHRKAIKLLLALSNR--TEMGIS---------SMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 355 --------~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~--~dp~~~---------a~~~nnLG~iy~~~g~~~eA 412 (854)
+..++-..-+.-++..+ .|.+|...+.+.... ..+..+ +.+++..|..|+-.|++..|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 11233333333444444 788888877776541 122233 67777789999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
..-|++++.+.+ .....|..+|.+|++..+.++-+..|.+|..++|+++++|+..|+..+.+.
T Consensus 346 ~~d~~~~I~l~~----------------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~- 408 (606)
T KOG0547|consen 346 QEDFDAAIKLDP----------------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ- 408 (606)
T ss_pred hhhHHHHHhcCc----------------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-
Confidence 999999999832 233447789999999999999999999999999999999999999887311
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+++|...|+.|+.|+|++..
T Consensus 409 -----------------------------------------------------------q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 409 -----------------------------------------------------------QYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhhcChhhhH
Confidence 147799999999999999552
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
T Consensus 430 -------------------------------------------------------------------------------- 429 (606)
T KOG0547|consen 430 -------------------------------------------------------------------------------- 429 (606)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPF 731 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~ 731 (854)
.+.-++++..+++++.++..-+.++.. .|.++..|.+.| |+|...+++++|++.|+.++. +....
T Consensus 430 -----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fA-----eiLtDqqqFd~A~k~YD~ai~--LE~~~-- 495 (606)
T KOG0547|consen 430 -----AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFA-----EILTDQQQFDKAVKQYDKAIE--LEPRE-- 495 (606)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH-----HHHhhHHhHHHHHHHHHHHHh--hcccc--
Confidence 133457788899999999999999997 899999996654 588899999999999999993 32100
Q ss_pred CchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Q 003047 732 SGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFA-MQGEFERAHHFVTQALSILPR 810 (854)
Q Consensus 732 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~-~~g~~e~A~~~~~~Al~~~P~ 810 (854)
+ . + ..++..+++-|.+.. -.+++.+|+.++++|++++|.
T Consensus 496 ------~----~---------------------------~---~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 496 ------H----L---------------------------I---IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred ------c----c---------------------------c---cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence 0 0 0 002222333333332 349999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 811 STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 811 ~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+-.+.-.++.++|++|+.++|++++.+
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=185.13 Aligned_cols=301 Identities=17% Similarity=0.121 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHHHHHhhcH--HHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 144 DVSVAKLNIAVIWFHLHEY--AKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y--~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+-..++.++|..|....+| .+|+..|+++-..+.... -|...++..|+++++|++|..+...+.+.-+..
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-----wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r--- 386 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-----WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR--- 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---
Confidence 3445777889999888887 799999999555443322 256668899999999999986543333322111
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
.+.
T Consensus 387 -v~~---------------------------------------------------------------------------- 389 (638)
T KOG1126|consen 387 -VKG---------------------------------------------------------------------------- 389 (638)
T ss_pred -ccc----------------------------------------------------------------------------
Confidence 000
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
++-|...++-. +...+ ----.+.+++.+ |+.|..|-.+|+.|-.+++++.|+++|+
T Consensus 390 --------------meiyST~LWHL-------q~~v~-Ls~Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~ 445 (638)
T KOG1126|consen 390 --------------MEIYSTTLWHL-------QDEVA-LSYLAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFK 445 (638)
T ss_pred --------------hhHHHHHHHHH-------HhhHH-HHHHHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHH
Confidence 11122222222 11111 112236788899 9999999999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. .||. .+.+|--+|.-+.....++.|..+|++||.. .+++..+||-+|.+|+++++++.
T Consensus 446 RAiQ-ldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----------------~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 446 RAIQ-LDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----------------DPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred Hhhc-cCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----------------CchhhHHHHhhhhheeccchhhH
Confidence 9999 7995 5889998999999999999999999999998 35678999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 462 AARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 462 Al~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
|.-.|++|++++|.+..+...+|..+. +.+ .
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~---~~k-------------------------------------~--------- 538 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQH---QLK-------------------------------------R--------- 538 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHH---Hhh-------------------------------------h---------
Confidence 999999999999999888777776655 210 1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
.+.|...|++|++++|..+..
T Consensus 539 -----------~d~AL~~~~~A~~ld~kn~l~------------------------------------------------ 559 (638)
T KOG1126|consen 539 -----------KDKALQLYEKAIHLDPKNPLC------------------------------------------------ 559 (638)
T ss_pred -----------hhHHHHHHHHHHhcCCCCchh------------------------------------------------
Confidence 156999999999999996520
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYA 700 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~ 700 (854)
.+..|.++.+++++++|+.-++++-+ .|+.+.+|..+|.+|.
T Consensus 560 -------------------------------------~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 560 -------------------------------------KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred -------------------------------------HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 12446789999999999999999998 8999999999999777
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 003047 701 AEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 701 aeAl~~lgr~~eAl~~l~~~l 721 (854)
.+|+.+.|+.+|..+.
T Consensus 603 -----~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 603 -----RLGNTDLALLHFSWAL 618 (638)
T ss_pred -----HHccchHHHHhhHHHh
Confidence 6899999999999998
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-16 Score=167.93 Aligned_cols=492 Identities=17% Similarity=0.127 Sum_probs=315.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCC------CHHHHHHHHHHHHHHhCCCChhHHH
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK------------KPD------DPKILHNIAIAEYFRDGCTDPKKLL 84 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~------------~~~------~~~~l~nla~~~~~~~~~~~~~~~~ 84 (854)
...++-.|+.+....-..|+|++|++--+.+=.. -|. -..|++||+.-|-.. .-+.
T Consensus 145 le~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n------dm~~ 218 (840)
T KOG2003|consen 145 LEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN------DMTA 218 (840)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh------HHHH
Confidence 3456777888899999999999998866544221 111 245677777432211 1122
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHH
Q 003047 85 EALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAK 164 (854)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~ 164 (854)
++|....--+.. .+ =|....+..|+|.|+++++.|.|
T Consensus 219 ealntyeiivkn------------------------------------------km-f~nag~lkmnigni~~kkr~fsk 255 (840)
T KOG2003|consen 219 EALNTYEIIVKN------------------------------------------KM-FPNAGILKMNIGNIHFKKREFSK 255 (840)
T ss_pred HHhhhhhhhhcc------------------------------------------cc-cCCCceeeeeecceeeehhhHHH
Confidence 333322222210 00 12234466799999999999999
Q ss_pred HHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCC
Q 003047 165 ALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPS 244 (854)
Q Consensus 165 A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (854)
||++|+-++..++.+...+.++++.+++...++.|+|+.||.. |+-..... ++-
T Consensus 256 aikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dains---fdh~m~~~--pn~--------------------- 309 (840)
T KOG2003|consen 256 AIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINS---FDHCMEEA--PNF--------------------- 309 (840)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhh---HHHHHHhC--ccH---------------------
Confidence 9999999999999999999999999999999999999999954 45443332 100
Q ss_pred CCcccccccchhhhhhhhhhhhhhhhhh--hhhhh-hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH
Q 003047 245 NSSTADASNSDLAATVNASENALSRTLS--EETLE-DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL 321 (854)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (854)
..++ | +-+....++ |+.-+ |...+ +|.. -+..+.|..
T Consensus 310 -----------~a~~-n--l~i~~f~i~d~ekmkeaf~kli-----~ip~---------------------~~dddkyi~ 349 (840)
T KOG2003|consen 310 -----------IAAL-N--LIICAFAIGDAEKMKEAFQKLI-----DIPG---------------------EIDDDKYIK 349 (840)
T ss_pred -----------Hhhh-h--hhhhheecCcHHHHHHHHHHHh-----cCCC---------------------CCCcccccC
Confidence 0000 0 111223333 11111 22221 1100 011111100
Q ss_pred ---------HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcC---CCCCH--------------------HHHHHHHHHH
Q 003047 322 ---------KLQLYKVRFLLLT--RNLKHAKREVKLAMNIAR---GKDSS--------------------LALFLKSQLE 367 (854)
Q Consensus 322 ---------~l~l~K~~lyl~~--~~~~~A~~elk~al~~~~---~P~~~--------------------~a~~lla~ly 367 (854)
.-+-.|.--+-.+ .+...|.+.+-.+.++-- -|+.. +.-..++.-+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 0000011000000 111122233322222210 02221 1224567778
Q ss_pred HHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 368 YARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL--AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~--g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
+.+|+++.|+++++-..+ .+......+-+||..+++-+ +++..|..|-..||.+++ -++.+
T Consensus 430 lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr----------------yn~~a 492 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR----------------YNAAA 492 (840)
T ss_pred HhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc----------------cCHHH
Confidence 888888888888766555 34333344566776666653 367788888888887722 23566
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeecc
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMED 525 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~ 525 (854)
+.|.|.+.+..|++++|.+.|+++|.-+..-..+++++|..+- ..
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e---~~-------------------------------- 537 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE---AL-------------------------------- 537 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---Hh--------------------------------
Confidence 7788888888999999999999888877777777777775433 10
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccc
Q 003047 526 GFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLS 605 (854)
Q Consensus 526 ~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (854)
..+++|..||-....++-...
T Consensus 538 -------------------------~~ldeald~f~klh~il~nn~---------------------------------- 558 (840)
T KOG2003|consen 538 -------------------------GNLDEALDCFLKLHAILLNNA---------------------------------- 558 (840)
T ss_pred -------------------------cCHHHHHHHHHHHHHHHHhhH----------------------------------
Confidence 146789999876554443311
Q ss_pred cccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-
Q 003047 606 SLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE- 684 (854)
Q Consensus 606 ~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~- 684 (854)
-+|+-+|.+|-.+.++..|++.+-++-.
T Consensus 559 ---------------------------------------------------evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 559 ---------------------------------------------------EVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 2356678899999999999999999987
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCC
Q 003047 685 LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPED 764 (854)
Q Consensus 685 ~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 764 (854)
.|.+|..+.-||.+|-.| |+-..|.+|+-..-..
T Consensus 588 ip~dp~ilskl~dlydqe-----gdksqafq~~ydsyry----------------------------------------- 621 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQE-----GDKSQAFQCHYDSYRY----------------------------------------- 621 (840)
T ss_pred CCCCHHHHHHHHHHhhcc-----cchhhhhhhhhhcccc-----------------------------------------
Confidence 899999999999999865 8999998887665521
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 765 SRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
+|-+. ..+-| ||..|....=+++|+..|++|.-+.|+...+.++.+-+.-+.|+++.|+.++|. ||..|.
T Consensus 622 ----fp~ni---e~iew--l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 622 ----FPCNI---ETIEW--LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ----cCcch---HHHHH--HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 12211 24445 899999999999999999999999999999999999999999999999999999 998887
Q ss_pred ccc
Q 003047 844 LPS 846 (854)
Q Consensus 844 ~~~ 846 (854)
+-.
T Consensus 693 dld 695 (840)
T KOG2003|consen 693 DLD 695 (840)
T ss_pred chH
Confidence 643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-16 Score=169.60 Aligned_cols=486 Identities=16% Similarity=0.157 Sum_probs=339.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLD--KKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~--~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..-||--|.+|--+.-+.+|+..|+=+.. ..|+....-.|+|.++|-++.|+++.+ ..+-++.+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaik------fyrmaldq-------- 266 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIK------FYRMALDQ-------- 266 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHH------HHHHHHhh--------
Confidence 34566677777777888899999987776 378888889999999997777666555 44444421
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
.. ++....---.+.|+|+.+.+.|+|+.||.-|+-.+...+. .
T Consensus 267 vp--------------------------------sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn---~-- 309 (840)
T KOG2003|consen 267 VP--------------------------------SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN---F-- 309 (840)
T ss_pred cc--------------------------------ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc---H--
Confidence 11 0001111225679999999999999999999988873322 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
...++|+.+|+.-|+.+|.- +.|+|.+.+--.++.| ||-+.++++.+ + +.|...
T Consensus 310 -~a~~nl~i~~f~i~d~ekmk---eaf~kli~ip~~~ddd-------------kyi~~~ddp~~--------~-ll~eai 363 (840)
T KOG2003|consen 310 -IAALNLIICAFAIGDAEKMK---EAFQKLIDIPGEIDDD-------------KYIKEKDDPDD--------N-LLNEAI 363 (840)
T ss_pred -HhhhhhhhhheecCcHHHHH---HHHHHHhcCCCCCCcc-------------cccCCcCCcch--------H-HHHHHH
Confidence 24788899999999999987 4678887765334332 46666666553 1 111111
Q ss_pred h-hhhhh-------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhh---hhcccchhHHHHHHHHHHHHHHHH
Q 003047 265 N-ALSRT-------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTL---VDRSISTVDLKLKLQLYKVRFLLL 333 (854)
Q Consensus 265 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~l~l~K~~lyl~ 333 (854)
+ .+-.. ..|+++-.-..+ ..||-....-+|--+ +-+.....++...+++-|+--|+.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~ki------------iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKI------------IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH------------hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 1 11111 112222211111 011111111111100 001111234556788899999999
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHH--hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSS-LALFLKSQLEYA--RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~-~a~~lla~ly~~--~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
+|+++.|++-+|-.-..+ ..-. .+-.++.-+++. -.++-+|-.+-..++. .+. .++.++.|.|.+-+..|+++
T Consensus 432 ~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln-~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKD--NKTASAAANNLCALRFLQGGKDFADAQQYADIALN-IDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred ccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc-ccc-cCHHHhhcCCceeeecCcHH
Confidence 999999999988777766 3222 233445555554 3368899999999998 566 57889999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+|.+.|+.||..+ ....+++||+|..+..+|+.++|++||.+.-.+--++..++++++.+|-.+
T Consensus 508 ka~~~ykeal~nd----------------asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 508 KAAEFYKEALNND----------------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred HHHHHHHHHHcCc----------------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999972 234689999999999999999999999999999999999999999988731
Q ss_pred HhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 003047 491 LEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYP 570 (854)
Q Consensus 491 ~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~ 570 (854)
.. ...|+..|-+|..+.|.+
T Consensus 572 ed------------------------------------------------------------~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 572 ED------------------------------------------------------------PAQAIELLMQANSLIPND 591 (840)
T ss_pred hC------------------------------------------------------------HHHHHHHHHHhcccCCCC
Confidence 11 033888888888888885
Q ss_pred cccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHh
Q 003047 571 DLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650 (854)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 650 (854)
+
T Consensus 592 p------------------------------------------------------------------------------- 592 (840)
T KOG2003|consen 592 P------------------------------------------------------------------------------- 592 (840)
T ss_pred H-------------------------------------------------------------------------------
Confidence 5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCC
Q 003047 651 NQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDL 729 (854)
Q Consensus 651 ~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~ 729 (854)
.+|..||-.|-.-||-..|..|+-.... .|.+....--||..|. ...=.+.|+.+|+++-. ..
T Consensus 593 ------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi-----dtqf~ekai~y~ekaal--iq--- 656 (840)
T KOG2003|consen 593 ------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI-----DTQFSEKAINYFEKAAL--IQ--- 656 (840)
T ss_pred ------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH-----hhHHHHHHHHHHHHHHh--cC---
Confidence 2466778888889999999998888777 7777788888887665 45678899999999872 11
Q ss_pred CCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 730 PFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 730 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
.++.+| ..-+|.++...|+|.+|...|++..+..|
T Consensus 657 ----p~~~kw-----------------------------------------qlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 657 ----PNQSKW-----------------------------------------QLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ----ccHHHH-----------------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 111111 24478899999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 003047 810 RSTEATLTAIYV 821 (854)
Q Consensus 810 ~~~~a~~l~~y~ 821 (854)
.+..-+..+|.+
T Consensus 692 edldclkflvri 703 (840)
T KOG2003|consen 692 EDLDCLKFLVRI 703 (840)
T ss_pred cchHHHHHHHHH
Confidence 887666666665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-15 Score=160.18 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=208.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-------------
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG------------- 390 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~------------- 390 (854)
++...+|...++.++++.....++.. . |.+.-.....|.+.+.+.++++|+..|+.+.+ .+|.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf--~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGF--PNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC--CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHH
Confidence 34455555556677777777777777 4 77777777777777777777777777777776 4443
Q ss_pred --------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 391 --------------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 391 --------------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
..+..-.-+|++|.-.+++++|+.||++||++ ++....+|--+|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmG 371 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMG 371 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhh
Confidence 11112223688898899999999999999999 345568899999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCC
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~ 530 (854)
.-|+.+++...|+++|++|++++|.+.++|+-||+.|-.. .
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~-------------------------------------- 412 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM-K-------------------------------------- 412 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-c--------------------------------------
Confidence 9999999999999999999999999999999999987720 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccc
Q 003047 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610 (854)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (854)
....|.-.|++|+.+.|.+.
T Consensus 413 ---------------------Mh~YaLyYfqkA~~~kPnDs--------------------------------------- 432 (559)
T KOG1155|consen 413 ---------------------MHFYALYYFQKALELKPNDS--------------------------------------- 432 (559)
T ss_pred ---------------------chHHHHHHHHHHHhcCCCch---------------------------------------
Confidence 12569999999999999954
Q ss_pred ccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCh
Q 003047 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCS 689 (854)
Q Consensus 611 ~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~ 689 (854)
.+|..||-+|..+++.++|+.++++++. .....
T Consensus 433 ----------------------------------------------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 433 ----------------------------------------------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred ----------------------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 2366789999999999999999999998 44467
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCC
Q 003047 690 RIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTM 769 (854)
Q Consensus 690 ~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~ 769 (854)
.++..||.+|. .+++.++|..++.+.+... . .++ ..+|
T Consensus 467 ~~l~~LakLye-----~l~d~~eAa~~yek~v~~~-~--------------------~eg------------~~~~---- 504 (559)
T KOG1155|consen 467 SALVRLAKLYE-----ELKDLNEAAQYYEKYVEVS-E--------------------LEG------------EIDD---- 504 (559)
T ss_pred HHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-H--------------------hhc------------ccch----
Confidence 88988888777 6899999999999999310 0 000 0011
Q ss_pred CCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 770 FPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 770 p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
..-.+.++ ||.-+...+++++|.....+++.-.|
T Consensus 505 ----~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 505 ----ETIKARLF--LAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred ----HHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 11245666 99999999999999998888876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=182.25 Aligned_cols=134 Identities=11% Similarity=0.038 Sum_probs=85.4
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHHHHHHHHHHcCC
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNNNLGCIYYQLAK 408 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~nnLG~iy~~~g~ 408 (854)
.+.+=+.++|+..+.++.... ++-...+.++|..||.+++|++|.++|+.+-+ .+|-.. -++| ..++.-++
T Consensus 329 ~~s~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~-~~p~rv~~meiy---ST~LWHLq- 401 (638)
T KOG1126|consen 329 SLSQYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRR-IEPYRVKGMEIY---STTLWHLQ- 401 (638)
T ss_pred HHHHHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccccchhHH---HHHHHHHH-
Confidence 334446778888888876666 88888888899999999999999999998887 455211 1111 11111111
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
-+-++.++-+-|-.. .+..++.|--+|+||..+++++.|++||++|++++|++..+|.-+|.=
T Consensus 402 ~~v~Ls~Laq~Li~~---------------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDT---------------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred hhHHHHHHHHHHHhh---------------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 133444444433320 123456777777777777777777777777777777777777766643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-14 Score=157.38 Aligned_cols=367 Identities=17% Similarity=0.110 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
-|+..|+...+.|..+.|++.|.++...-|-.=.+|-.|+.+ +++ .. .+..+-...
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l------it~-~e---~~~~l~~~l-------------- 221 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL------ITD-IE---ILSILVVGL-------------- 221 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh------hch-HH---HHHHHHhcC--------------
Confidence 367889999999999999999999999999988888877754 111 11 111110000
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
..| ..=---.-++.+|..+++.++++.-++++....-+...+ +-
T Consensus 222 ------------------------------~~~--~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~----i~ 265 (559)
T KOG1155|consen 222 ------------------------------PSD--MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMY----IK 265 (559)
T ss_pred ------------------------------ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHH----HH
Confidence 000 011112245888999999999999999999864454443 33
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
...+.++....++|+|+++ ||..+.- +|.+
T Consensus 266 ~~~A~~~y~~rDfD~a~s~---Feei~kn----DPYR------------------------------------------- 295 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESV---FEEIRKN----DPYR------------------------------------------- 295 (559)
T ss_pred HHHHHHHhhhhhHHHHHHH---HHHHHhc----CCCc-------------------------------------------
Confidence 4457888889999999864 4544321 1111
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
++ .+.+|-.-+|+...+-+-+. -...+.
T Consensus 296 ------------------l~---------------------------------dmdlySN~LYv~~~~skLs~-LA~~v~ 323 (559)
T KOG1155|consen 296 ------------------LD---------------------------------DMDLYSNVLYVKNDKSKLSY-LAQNVS 323 (559)
T ss_pred ------------------ch---------------------------------hHHHHhHHHHHHhhhHHHHH-HHHHHH
Confidence 00 01111122333332222111 123445
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 349 NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 349 ~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
+++ .=-++..-.+|+.|-.+++++||+.+|+++++ .+|. ...+|.-||.-|..|++-..|+..|++|+.+
T Consensus 324 ~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-LNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------ 393 (559)
T KOG1155|consen 324 NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALK-LNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------ 393 (559)
T ss_pred Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHh-cCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc------
Confidence 555 44556677889999999999999999999999 7995 5779999999999999999999999999999
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEV 508 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~ 508 (854)
+|.+..+||.||-+|..++.+.=|+-+|++|+.+.|++++.|..||+||-.++
T Consensus 394 ----------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~----------------- 446 (559)
T KOG1155|consen 394 ----------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN----------------- 446 (559)
T ss_pred ----------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc-----------------
Confidence 56788999999999999999999999999999999999999999999997211
Q ss_pred ceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccc
Q 003047 509 KVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEES 588 (854)
Q Consensus 509 ~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~ 588 (854)
.+++|++||.+|+.+... .
T Consensus 447 -------------------------------------------~~~eAiKCykrai~~~dt-e----------------- 465 (559)
T KOG1155|consen 447 -------------------------------------------RLEEAIKCYKRAILLGDT-E----------------- 465 (559)
T ss_pred -------------------------------------------cHHHHHHHHHHHHhcccc-c-----------------
Confidence 247899999999876554 1
Q ss_pred ccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHH
Q 003047 589 ESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELE 668 (854)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~ 668 (854)
| ++|..||-.|-+
T Consensus 466 ---------------------------------~----------------------------------~~l~~LakLye~ 478 (559)
T KOG1155|consen 466 ---------------------------------G----------------------------------SALVRLAKLYEE 478 (559)
T ss_pred ---------------------------------h----------------------------------HHHHHHHHHHHH
Confidence 1 457788999999
Q ss_pred cCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 669 MENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 669 lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
++|..+|..++.+-++. .........-+.+.+|+=....+++++|-.+....+.
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999986641 1222223334445555566789999999999998884
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-14 Score=158.59 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc-CCC-------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCC
Q 003047 661 NLAYVELEMENPVKALAAARSLLE-LPD-------CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFS 732 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~-~p~-------~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~ 732 (854)
-+|.|...-+.|.+|+.+++.+|+ .+. -.+.+.+|||+|. .+++++||+.++++++. +
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-----kl~~~~eAI~~~q~aL~--l------- 484 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-----KLNKYEEAIDYYQKALL--L------- 484 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-----HHhhHHHHHHHHHHHHH--c-------
Confidence 446788889999999999999883 221 2356899999665 79999999999999993 2
Q ss_pred chhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 733 GEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 733 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|. .+..|..+|.+|..+|+++.|+..|++||.+.|++.
T Consensus 485 -------------------------------~~k----------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 485 -------------------------------SPK----------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred -------------------------------CCC----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 133 577888999999999999999999999999999994
Q ss_pred HH
Q 003047 813 EA 814 (854)
Q Consensus 813 ~a 814 (854)
.+
T Consensus 524 ~~ 525 (611)
T KOG1173|consen 524 FI 525 (611)
T ss_pred HH
Confidence 43
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-13 Score=164.02 Aligned_cols=443 Identities=11% Similarity=-0.045 Sum_probs=292.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
-|..+...|..|++.+++|+|++|++.|+++++.. |.... ....++.++...|+.++|+ .++++++...
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~----av~dll~l~~~~G~~~~A~---~~~eka~~p~--- 98 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSG----QVDDWLQIAGWAGRDQEVI---DVYERYQSSM--- 98 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchh----hHHHHHHHHHHcCCcHHHH---HHHHHhccCC---
Confidence 34566689999999999999999999999999943 33321 1226778888899999998 5778876110
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
+. ..
T Consensus 99 -n~------------------------------~~--------------------------------------------- 102 (822)
T PRK14574 99 -NI------------------------------SS--------------------------------------------- 102 (822)
T ss_pred -CC------------------------------CH---------------------------------------------
Confidence 00 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
....-.+++|..+|++++|++.++++++.+ |+++.+++.++.++...+++++|++.++
T Consensus 103 --------------------~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 103 --------------------RGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 011113678899999999999999999999 9999999999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
++.+ .+|. ... +..++.++..++++.+|++.|++++.. .|.+.++++.+..++...|-...
T Consensus 161 ~l~~-~dp~-~~~-~l~layL~~~~~~~~~AL~~~ekll~~----------------~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 161 ELAE-RDPT-VQN-YMTLSYLNRATDRNYDALQASSEAVRL----------------APTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred Hhcc-cCcc-hHH-HHHHHHHHHhcchHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHH
Confidence 9999 7884 333 344666777788888899999999998 34567888899999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 462 AARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 462 Al~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
|++...+--.++-..-..|+....+... -+..... .. .....+
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~-vr~a~~~---------------------------~~-~~~~r~-------- 264 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQ-VRMAVLP---------------------------TR-SETERF-------- 264 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHH-Hhhcccc---------------------------cc-cchhhH--------
Confidence 9977665333333333344444333221 1110000 00 000000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
..++.|...+++.+..-|..+++.+ .++.+.- . .+..+..-
T Consensus 265 ---------~~~d~ala~~~~l~~~~~~~p~~~~-------------------~~~~~~~----------D-rl~aL~~r 305 (822)
T PRK14574 265 ---------DIADKALADYQNLLTRWGKDPEAQA-------------------DYQRARI----------D-RLGALLVR 305 (822)
T ss_pred ---------HHHHHHHHHHHHHHhhccCCCccch-------------------HHHHHHH----------H-HHHHHHHh
Confidence 1246677777777775555443210 0000000 0 00000011
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC-C---Ch-HHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELP-D---CS-RIYIFLG 696 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p-~---~~-~~~~~la 696 (854)
+. ..+++ .-+..|.... ..+=..+....|-.|+.++.|.+|+..+++++..+ + .+ +.....+
T Consensus 306 ~r--------~~~vi----~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 306 HQ--------TADLI----KEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred hh--------HHHHH----HHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 11 11122 1222222111 01112455667899999999999999999998743 2 11 1211222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhh
Q 003047 697 HIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEA 776 (854)
Q Consensus 697 ~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a 776 (854)
. ..|++..+++++|..+++..... . |+. -.++ ++++.+..|.
T Consensus 373 L---~yA~ld~e~~~~A~~~l~~~~~~--~---p~~-----------~~~~---------~~~~~~pn~d---------- 414 (822)
T PRK14574 373 L---YYSLNESEQLDKAYQFAVNYSEQ--T---PYQ-----------VGVY---------GLPGKEPNDD---------- 414 (822)
T ss_pred H---HHHHHhcccHHHHHHHHHHHHhc--C---CcE-----------Eecc---------CCCCCCCCcc----------
Confidence 2 33688999999999999998831 1 100 0011 1111111121
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
-...+..++.++.-.|++++|++.++..+..-|.++.+++.++-++...|++.+|.+.++...
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999999999999999999999998833
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-15 Score=161.95 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 371 RNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 371 g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
+..+.++..+.+++.. .+|...+.+|+++|.+|..+|++++|+..|+++++. .|..+.+|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~ 103 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNY 103 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHH
Confidence 3455566666666641 233233556666777777777777777777777776 2344566777
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|.++...|++++|+.+|+++++++|+++.+|.++|.++.
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777776665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-13 Score=158.61 Aligned_cols=362 Identities=15% Similarity=0.093 Sum_probs=190.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
-+++-+....+.|+.+|...|-.|++++|..++.++...+|.++.+++-||.+|--+++ ..+++.....+.
T Consensus 130 r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd------~eK~l~~~llAA--- 200 (895)
T KOG2076|consen 130 RGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD------IEKALNFWLLAA--- 200 (895)
T ss_pred CcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc------HHHHHHHHHHHH---
Confidence 34455555699999999999999999999999999999999999999999988765543 233444333332
Q ss_pred HhhhcccCCCC-------CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003047 98 ARATGEQTEGG-------GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170 (854)
Q Consensus 98 ~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e 170 (854)
|.+..+.+-= -..|+.. .+...+ + -.+.. +|++-.+.|+.+.+|.+.|++..|...|+
T Consensus 201 -HL~p~d~e~W~~ladls~~~~~i~------qA~~cy--~-----rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 201 -HLNPKDYELWKRLADLSEQLGNIN------QARYCY--S-----RAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred -hcCCCChHHHHHHHHHHHhcccHH------HHHHHH--H-----HHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1111100000 0000000 000000 0 00112 45555566667777777777777777777
Q ss_pred HhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccc
Q 003047 171 PLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTAD 250 (854)
Q Consensus 171 ~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (854)
+++...++.+-..........+..++..++-..|+ +.+|.++..... . -+.+
T Consensus 266 ~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~---~~le~~~s~~~~----~-----------------~~~e---- 317 (895)
T KOG2076|consen 266 QLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA---KALEGALSKEKD----E-----------------ASLE---- 317 (895)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHhhccc----c-----------------cccc----
Confidence 77776665444333333444456666666666665 455655542200 0 0000
Q ss_pred cccchhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhccc-------chhHHH
Q 003047 251 ASNSDLAATVNASENALS---RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSI-------STVDLK 320 (854)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~ 320 (854)
+.+ +-...-... ..-+..+.++..- +.+.+...| .++..+.. -+.+..
T Consensus 318 ----d~n--i~ael~l~~~q~d~~~~~i~~~~~r----~~e~d~~e~------------~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 318 ----DLN--ILAELFLKNKQSDKALMKIVDDRNR----ESEKDDSEW------------DTDERRREEPNALCEVGKELS 375 (895)
T ss_pred ----HHH--HHHHHHHHhHHHHHhhHHHHHHhcc----ccCCChhhh------------hhhhhccccccccccCCCCCC
Confidence 000 000000000 0000111111110 000000000 00000000 001111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR--GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN 398 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~--~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn 398 (854)
-.|.++|..+.+..=+..+..+.+...+-... ..+.++-++.++..++..|+|++|+++|..+.. .++..++.+|..
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYK 454 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHH
Confidence 12333333333333232333333333332221 024455667778888888888888888887777 555556677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
+|.+|..+|.+++|+++|.++|.. .|.+..+-..|+..+.++|++++|++.+.+..
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~----------------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL----------------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc----------------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 888888888888888888888877 23445566677788888888888887777766
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=160.95 Aligned_cols=292 Identities=21% Similarity=0.155 Sum_probs=231.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKIL-HNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l-~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
+..-|+..-++=+..+|-.+|..++|.+|++++.++++++|-++..+ ..|| +.+..++ ..+ |-.+.-.+.
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~---~n~----Lf~lsh~LV- 305 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGK---SNK----LFLLSHKLV- 305 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcc---cch----HHHHHHHHH-
Confidence 44556666677888999999999999999999999999999986553 4455 4443333 222 222322221
Q ss_pred HHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcc
Q 003047 97 LARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNI 176 (854)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~ 176 (854)
. +.|+.++.|+-.|..|+-.|+|++|-.+|-|....-
T Consensus 306 ------------------------------------------~-~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 306 ------------------------------------------D-LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred ------------------------------------------H-hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 1 368899999999999999999999999999999843
Q ss_pred CCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchh
Q 003047 177 EPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDL 256 (854)
Q Consensus 177 ~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (854)
+ ..+. .++-++..|-..++-++|+..| -++-.+. +..
T Consensus 343 ~----~fgp-aWl~fghsfa~e~EhdQAmaaY---~tAarl~----~G~------------------------------- 379 (611)
T KOG1173|consen 343 P----TFGP-AWLAFGHSFAGEGEHDQAMAAY---FTAARLM----PGC------------------------------- 379 (611)
T ss_pred c----cccH-HHHHHhHHhhhcchHHHHHHHH---HHHHHhc----cCC-------------------------------
Confidence 3 3332 5777899999999999998644 3333232 000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcC
Q 003047 257 AATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRN 336 (854)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~ 336 (854)
.+ -.+|-+.-|.++++
T Consensus 380 -----------------------------hl-----------------------------------P~LYlgmey~~t~n 395 (611)
T KOG1173|consen 380 -----------------------------HL-----------------------------------PSLYLGMEYMRTNN 395 (611)
T ss_pred -----------------------------cc-----------------------------------hHHHHHHHHHHhcc
Confidence 01 12344556778999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---c--CCCccHHHHHHHHHHHHHcCCHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---T--EMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~--dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
++-|.+-+..++.+. |.++-.+..+|.+.+..+.|.+|+++|+.++.. . +...+...++|||.+|.+++++++
T Consensus 396 ~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999999999 999999999999999999999999999999942 1 111366789999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
||.+|+++|.. .+.++.++-.+|.+|..+|+++.|++.|.++|.+.|++..+-.-|+.+
T Consensus 474 AI~~~q~aL~l----------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLL----------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHc----------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999998 456788999999999999999999999999999999998877767644
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=167.11 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHHHHHH---hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhchhccc
Q 003047 361 FLKSQLEYA---RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---------AKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 361 ~lla~ly~~---~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---------g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
++.|..++. .+.+++|+.+|++++. .+|+ .+.+|.++|.+|..+ +++++|+.++++|+++
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~-ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------ 333 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVN-MSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------ 333 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------
Confidence 444544432 2345566666666666 5663 455566666655432 2256666666666665
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|.+..++..+|.++...|++++|+.+|+++++++|+++.+|+.+|.++.
T Consensus 334 ----------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 334 ----------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF 383 (553)
T ss_pred ----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 23345566666666666666666666666666666666666666666655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-12 Score=160.43 Aligned_cols=452 Identities=10% Similarity=-0.008 Sum_probs=294.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 34 AALYFQSRKFDECLDLLKQLLDKKPD--DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 34 a~~~~~~g~y~~Al~~l~~~l~~~~~--~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
-..+...|++++|+++|+.+....+. |..++..+..+....+. +. ....+...+...
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~------~~-~a~~l~~~m~~~-------------- 152 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS------IR-CVKAVYWHVESS-------------- 152 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC------HH-HHHHHHHHHHHh--------------
Confidence 34456789999999999999875433 56666666555332221 11 222233333110
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL 191 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l 191 (854)
.. .+ +...+..+..+|.+.|++++|.++|+++.. + +. ..+..+
T Consensus 153 ---------------------------g~-~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~-~~----~t~n~l 195 (697)
T PLN03081 153 ---------------------------GF-EP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---R-NL----ASWGTI 195 (697)
T ss_pred ---------------------------CC-Cc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---C-Ce----eeHHHH
Confidence 01 23 355777788999999999999999988754 1 22 246678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhh
Q 003047 192 LDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTL 271 (854)
Q Consensus 192 ~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (854)
+..|...|++++|+.++..+. ..... ++. . +.+....... ..
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~---~~g~~--p~~-------------------------------~-t~~~ll~a~~-~~ 237 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMW---EDGSD--AEP-------------------------------R-TFVVMLRASA-GL 237 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHH---HhCCC--CCh-------------------------------h-hHHHHHHHHh-cC
Confidence 899999999999997665444 22200 110 0 0000000000 00
Q ss_pred h--hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 272 S--EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 272 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
+ +......... . ..+ ..+...-+.. -...|...|++++|.+-++..
T Consensus 238 ~~~~~~~~l~~~~----~---~~g------------------~~~d~~~~n~-----Li~~y~k~g~~~~A~~vf~~m-- 285 (697)
T PLN03081 238 GSARAGQQLHCCV----L---KTG------------------VVGDTFVSCA-----LIDMYSKCGDIEDARCVFDGM-- 285 (697)
T ss_pred CcHHHHHHHHHHH----H---HhC------------------CCccceeHHH-----HHHHHHHCCCHHHHHHHHHhC--
Confidence 0 0000000000 0 000 0000001111 145677888999888887654
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
. +.+...|..+...|...|++++|+++|.+.... ..| +...|+.+...|.+.|++++|...+.+.++.-
T Consensus 286 -~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g----- 355 (697)
T PLN03081 286 -P--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI--DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG----- 355 (697)
T ss_pred -C--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-----
Confidence 4 567788888888999999999999999888663 345 35678888889999999999999988888751
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEV 508 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~ 508 (854)
.+++..++..+...|.+.|+.++|.+.|++..+ | +...|..|...|. +.+
T Consensus 356 ----------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~---~~G-------------- 405 (697)
T PLN03081 356 ----------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYG---NHG-------------- 405 (697)
T ss_pred ----------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH---HcC--------------
Confidence 123455677788899999999999999988653 3 4567888887776 210
Q ss_pred ceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccc
Q 003047 509 KVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEES 588 (854)
Q Consensus 509 ~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~ 588 (854)
..++|...|++.+...-.+..
T Consensus 406 -------------------------------------------~~~~A~~lf~~M~~~g~~Pd~---------------- 426 (697)
T PLN03081 406 -------------------------------------------RGTKAVEMFERMIAEGVAPNH---------------- 426 (697)
T ss_pred -------------------------------------------CHHHHHHHHHHHHHhCCCCCH----------------
Confidence 136688888876643221100
Q ss_pred ccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHH
Q 003047 589 ESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELE 668 (854)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~ 668 (854)
..+..+-.++..
T Consensus 427 --------------------------------------------------------------------~T~~~ll~a~~~ 438 (697)
T PLN03081 427 --------------------------------------------------------------------VTFLAVLSACRY 438 (697)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhc
Confidence 112233445778
Q ss_pred cCCHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhh
Q 003047 669 MENPVKALAAARSLLEL---PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKII 745 (854)
Q Consensus 669 lg~~~~Al~~~~~lL~~---p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 745 (854)
.|+..+|..+++.+.+. .+....|..+.. +|+..|+++||.+.++..- .
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~-----~l~r~G~~~eA~~~~~~~~--~--------------------- 490 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIE-----LLGREGLLDEAYAMIRRAP--F--------------------- 490 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHH-----HHHhcCCHHHHHHHHHHCC--C---------------------
Confidence 89999999999998852 233445655554 5678999999998876432 0
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 003047 746 DCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLML 825 (854)
Q Consensus 746 d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~ 825 (854)
.| .+..|..|-.+++..|+++.|+..+++.+.+.|++......++.++.+.
T Consensus 491 ------------------~p-----------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 491 ------------------KP-----------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred ------------------CC-----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 13 3567888999999999999999999999999998765556666677799
Q ss_pred CCHHHHHHHHHh
Q 003047 826 GKSQEALAKLKY 837 (854)
Q Consensus 826 G~~~eA~~~lk~ 837 (854)
|++++|.++++.
T Consensus 542 G~~~~A~~v~~~ 553 (697)
T PLN03081 542 GRQAEAAKVVET 553 (697)
T ss_pred CCHHHHHHHHHH
Confidence 999999999987
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=160.88 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=236.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+....-.|++++|.+-+..+|..+ |.++.+++.+|.+|-++|+.+||+.+...+-- .+|.+ ...|..++....++|
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d-~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKD-YELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC-hHHHHHHHHHHHhcc
Confidence 445556699999999999999999 99999999999999999999999999988887 78865 479999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH-H----H
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW-L----R 482 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw-~----~ 482 (854)
.+++|+-||.||++. .|++.+..++....|.++|++..|.++|.+++.+.|..-.-| . .
T Consensus 222 ~i~qA~~cy~rAI~~----------------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 222 NINQARYCYSRAIQA----------------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred cHHHHHHHHHHHHhc----------------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 999999999999998 456678889999999999999999999999999999211111 1 1
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccC-CcCCCCCCCCCCCCCCCCCCCCCC----CChHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDG-FRKNGHVDSPEKDDSSLGSDGQPK----LSMPLAR 557 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~----~sl~~A~ 557 (854)
.+..++..... +....++ ... ...... +..+. ..+--..
T Consensus 286 ~~~~~~~~~~~-------------e~a~~~l----------e~~~s~~~~~-------------~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 286 VAHYFITHNER-------------ERAAKAL----------EGALSKEKDE-------------ASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHHHHhhHH-------------HHHHHHH----------HHHHhhcccc-------------ccccHHHHHHHHHHHh
Confidence 12222211110 0000000 000 000001 11111 1122223
Q ss_pred HHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHh
Q 003047 558 QCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQ 637 (854)
Q Consensus 558 ~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~ 637 (854)
..+++|+...-....- ..+ .+.+. .-|--.+ . ..+. ..+- +.
T Consensus 330 ~q~d~~~~~i~~~~~r----------~~e--~d~~e--~~~~~~~-~----~~~~-~~~~------------------~~ 371 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNR----------ESE--KDDSE--WDTDERR-R----EEPN-ALCE------------------VG 371 (895)
T ss_pred HHHHHhhHHHHHHhcc----------ccC--CChhh--hhhhhhc-c----cccc-cccc------------------CC
Confidence 3333333332221100 000 00000 0000000 0 0000 0000 00
Q ss_pred hhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 003047 638 NSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715 (854)
Q Consensus 638 ~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~ 715 (854)
.-+++..++ +...++.+++..++..+++.++-..-. -.+..+-|.- .++||+..|++.+|+.
T Consensus 372 ~~~s~~l~v-----------~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-----~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 372 KELSYDLRV-----------IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-----LADALTNIGKYKEALR 435 (895)
T ss_pred CCCCccchh-----------HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-----HHHHHHhcccHHHHHH
Confidence 112233222 355668899999999999998865444 2234555644 4568889999999999
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHH
Q 003047 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFE 795 (854)
Q Consensus 716 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e 795 (854)
+|.+.+..+. -+ ++.+|+++|.+|..+|.++
T Consensus 436 ~l~~i~~~~~---------------------------------------~~----------~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 436 LLSPITNREG---------------------------------------YQ----------NAFVWYKLARCYMELGEYE 466 (895)
T ss_pred HHHHHhcCcc---------------------------------------cc----------chhhhHHHHHHHHHHhhHH
Confidence 9999993110 01 5788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 796 RAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 796 ~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+|.++|.+++...|++..+...+.-++.++|+.++|+++|..
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=162.96 Aligned_cols=272 Identities=12% Similarity=0.033 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQS---RKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGC---TDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~---g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
.+-.++.+|..++.. +.+++|+++|+++++++|+++.++.++|.++...... ....++.+++..++++++
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~---- 332 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE---- 332 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----
Confidence 344577788766543 5688999999999999999999999999988766442 244567778888888773
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI 179 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~ 179 (854)
+ +|+++.++..+|.++...|++++|+.+|+++++..+..
T Consensus 333 ----------------------------------------l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 333 ----------------------------------------L-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred ----------------------------------------c-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2 67788899999999999999999999999999954332
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhh
Q 003047 180 DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAAT 259 (854)
Q Consensus 180 ~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (854)
.+ +++.++.+|...|++++|+ ..+++++.+. ++. .
T Consensus 372 ~~-----a~~~lg~~l~~~G~~~eAi---~~~~~Al~l~----P~~------------------------------~--- 406 (553)
T PRK12370 372 AD-----IKYYYGWNLFMAGQLEEAL---QTINECLKLD----PTR------------------------------A--- 406 (553)
T ss_pred HH-----HHHHHHHHHHHCCCHHHHH---HHHHHHHhcC----CCC------------------------------h---
Confidence 22 5778899999999999998 5778887664 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHH
Q 003047 260 VNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKH 339 (854)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~ 339 (854)
...+.+..++...|++++
T Consensus 407 --------------------------------------------------------------~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 407 --------------------------------------------------------------AAGITKLWITYYHTGIDD 424 (553)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHhccCHHH
Confidence 001112334566799999
Q ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 340 AKREVKLAMNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 340 A~~elk~al~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
|++.+++++.. . |+++.++..+|.++...|++++|...+.++.. ..|. ...+.+.++.+|..+| ++|...+++
T Consensus 425 A~~~~~~~l~~~~--p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 425 AIRLGDELRSQHL--QDNPILLSMQVMFLSLKGKHELARKLTKEIST-QEIT-GLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHhcc--ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-ccch-hHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 99999999987 5 78899999999999999999999999999887 5663 5667888999999988 488888888
Q ss_pred HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 419 ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 419 AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.++.... ...-......+|-..|+.+.|+.. +++.+-
T Consensus 499 ll~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 499 FLESEQR----------------IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhhH----------------hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7775210 011112256777778888887766 555444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=163.68 Aligned_cols=263 Identities=18% Similarity=0.154 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLD-K-KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~-~-~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.-|..++..|+|++|++++++... . +|+|+..|..+|.+....++ +..++...++-+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~------~~~A~~ay~~l~~-------------- 72 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD------YDEAIEAYEKLLA-------------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccc--------------
Confidence 348899999999999999977654 4 58999999888855443332 2223333333221
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
. ++.++..+.+++.+ ...++|++|++++++.++.... .+ ...
T Consensus 73 ------------------------------~-~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~-----~l~ 114 (280)
T PF13429_consen 73 ------------------------------S-DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PR-----YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------c-cccccccccccccc-cccccccccccccccccccccc-cc-----hhh
Confidence 1 12233455566666 7999999999999999885422 22 244
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
..+.+|...++++++..+++.++...... +
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~--------------------------------------------- 144 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAP-----D--------------------------------------------- 144 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T--------T---------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCC-----C---------------------------------------------
Confidence 56788999999999997765555211000 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
...+.+..+.+|...|+.++|++.++++++
T Consensus 145 --------------------------------------------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 145 --------------------------------------------------SARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 012445578899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
++ |+++.+...++.++...|+++++.+.+....+ ..|. ++.++..+|.+|..+|++++|+.+|++++..
T Consensus 175 ~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~-~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------- 243 (280)
T PF13429_consen 175 LD--PDDPDARNALAWLLIDMGDYDEAREALKRLLK-AAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL------- 243 (280)
T ss_dssp H---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-------
T ss_pred cC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HCcC-HHHHHHHHHHHhccccccccccccccccccc-------
Confidence 99 99999999999999999999998888877776 3342 3456778999999999999999999999997
Q ss_pred CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.+.++..+.++|.++...|++++|.+++++++..
T Consensus 244 ---------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 ---------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ---------STT-HHHHHHHHHHHT------------------
T ss_pred ---------cccccccccccccccccccccccccccccccccc
Confidence 3557788889999999999999999999998754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-11 Score=154.14 Aligned_cols=305 Identities=12% Similarity=0.048 Sum_probs=214.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.+...|++++|.+.++.+++..- ..+...+..+-..|...|++++|.++|++... + +...|+.|...|.+.|+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~--d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K--DVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C--CeeeHHHHHHHHHHCCCH
Confidence 56778999999999999988872 34566777888999999999999999998755 3 235789999999999999
Q ss_pred HHHHHHHHHHHHhch-hc-------c---c-C-----Cccc--cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSA-SL-------R---K-D-----KPLK--LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~-~l-------~---~-~-----~~l~--~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
++|+..|++.+.... +. . . . ..+. ........+..++..+-..|.+.|+.++|...|++.
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 999999999875311 00 0 0 0 0000 000011122233445567888888899998888875
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
+.+...|..|...|. +.|
T Consensus 551 ---~~d~~s~n~lI~~~~---~~G-------------------------------------------------------- 568 (857)
T PLN03077 551 ---EKDVVSWNILLTGYV---AHG-------------------------------------------------------- 568 (857)
T ss_pred ---CCChhhHHHHHHHHH---HcC--------------------------------------------------------
Confidence 566778888887776 211
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
..++|...|++.......+..
T Consensus 569 -~~~~A~~lf~~M~~~g~~Pd~---------------------------------------------------------- 589 (857)
T PLN03077 569 -KGSMAVELFNRMVESGVNPDE---------------------------------------------------------- 589 (857)
T ss_pred -CHHHHHHHHHHHHHcCCCCCc----------------------------------------------------------
Confidence 136688888877653222110
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C--CCChHHHHHHHHHHHHHHHHhc
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-L--PDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~--p~~~~~~~~la~lY~aeAl~~l 707 (854)
..+..+-..+...|++.+|..+++.+.. . .+....|..+.. +|+..
T Consensus 590 --------------------------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~-----~l~r~ 638 (857)
T PLN03077 590 --------------------------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD-----LLGRA 638 (857)
T ss_pred --------------------------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH-----HHHhC
Confidence 0011112346788999999999999883 2 344556665555 56789
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|+++||.+.++..- . .| ++..|..|-.+
T Consensus 639 G~~~eA~~~~~~m~---~--------------------------------------~p-----------d~~~~~aLl~a 666 (857)
T PLN03077 639 GKLTEAYNFINKMP---I--------------------------------------TP-----------DPAVWGALLNA 666 (857)
T ss_pred CCHHHHHHHHHHCC---C--------------------------------------CC-----------CHHHHHHHHHH
Confidence 99999999887642 0 13 25566667777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--cCCCcccc
Q 003047 788 FAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY--CNHVRFLP 845 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~--~~~~~~~~ 845 (854)
+...|+.+.|+...++++++.|+++....++..++-..|++++|.++.+. .+-+..+|
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999999999987788888888899999999999877 44444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=157.04 Aligned_cols=334 Identities=14% Similarity=0.044 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
.-.|..+|.+.+..|++.+-+++|+.+++....|. .|+..||.+|||..+|.++.+|-.--..+.+.+..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd------ 90 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD------ 90 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc------
Confidence 56799999999999999999999999999988885 56788999999998877666654433344444420
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~ 182 (854)
....+-.--|+|+++-.+|.|++|+-+.++-+.+.+++.|.
T Consensus 91 ---------------------------------------klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr 131 (639)
T KOG1130|consen 91 ---------------------------------------KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR 131 (639)
T ss_pred ---------------------------------------hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH
Confidence 01122233489999999999999999999999999999988
Q ss_pred h-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 183 T-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 183 ~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
. -.++++++++||...|+-..-.. .-... .. +.|. ..
T Consensus 132 v~e~RAlYNlgnvYhakGk~~g~~~-------pee~g----~f----------------------------~~ev---~~ 169 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHAKGKCTGLEA-------PEEKG----AF----------------------------NAEV---TS 169 (639)
T ss_pred HhhhHHHhhhhhhhhhcccccCCCC-------hhhcc----cc----------------------------cHHH---HH
Confidence 5 56788999999999886432110 00000 00 0000 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcc-ccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLSEETLEDDTVLALSSLEI-SGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
. =+.+++|+.-. ++. ...+..-.-|.+..|||.+|+-+ ++|..+|++.|.|+.+.+.-=+.|
T Consensus 170 a---------l~~Av~fy~eN----L~l~~~lgDr~aqGRa~GnLGNTyYlL----Gdf~~ai~~H~~RL~ia~efGDrA 232 (639)
T KOG1130|consen 170 A---------LENAVKFYMEN----LELSEKLGDRLAQGRAYGNLGNTYYLL----GDFDQAIHFHKLRLEIAQEFGDRA 232 (639)
T ss_pred H---------HHHHHHHHHHH----HHHHHHhhhHHhhcchhcccCceeeee----ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 0 02334444432 221 11222233478999999999988 999999999999988875333322
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
-+ . .++.++|+.|.-.|+++.|+++|++.+.. .+....+..-+.||..|.-.+.+++||.|+
T Consensus 233 ae-------R-------RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 233 AE-------R-------RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred HH-------H-------HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 22 2 58889999999999999999999998763 222234556678999999999999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC------CHHHHHHHHHHHH
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK------QPLLWLRLAECCL 488 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~------~~~aw~~La~~~i 488 (854)
.+=|.+.+.+... -....+.+.||.++..+|..+.|+.+.++.+++... ...+..+|...-.
T Consensus 299 ~rHLaIAqeL~Dr----------iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 299 QRHLAIAQELEDR----------IGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHHHh----------hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 9999996655311 113467789999999999999999988887776421 2345666665544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=163.34 Aligned_cols=258 Identities=21% Similarity=0.146 Sum_probs=102.3
Q ss_pred HHHHHHhcCHHHHHHHHHHH-HHh-cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLA-MNI-ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~a-l~~-~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
++++...|++++|++.+++. ... . |+++.++..+|.+....+++++|++.|++++. .++. .+..+.+++.+ ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~--~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAP--PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc-cccc-ccccccccccc-cc
Confidence 88999999999999999654 455 6 89999999999999999999999999999998 6664 56677778888 79
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--CCCHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--YKQPLLWLRL 483 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--P~~~~aw~~L 483 (854)
.+++++|+.++.++++.. +.+..+.....++...++++++...+.++.... |+++.+|..+
T Consensus 90 ~~~~~~A~~~~~~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD-----------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccccccccccccccccc-----------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999999988751 233445556778899999999999999987655 7889999999
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 003047 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563 (854)
Q Consensus 484 a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nA 563 (854)
|.++. +.| ..+.|+.+|++|
T Consensus 153 a~~~~---~~G---------------------------------------------------------~~~~A~~~~~~a 172 (280)
T PF13429_consen 153 AEIYE---QLG---------------------------------------------------------DPDKALRDYRKA 172 (280)
T ss_dssp HHHHH---HCC---------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHH---HcC---------------------------------------------------------CHHHHHHHHHHH
Confidence 99888 321 126699999999
Q ss_pred HhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccch
Q 003047 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYY 643 (854)
Q Consensus 564 L~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~ 643 (854)
|.+.|++..
T Consensus 173 l~~~P~~~~----------------------------------------------------------------------- 181 (280)
T PF13429_consen 173 LELDPDDPD----------------------------------------------------------------------- 181 (280)
T ss_dssp HHH-TT-HH-----------------------------------------------------------------------
T ss_pred HHcCCCCHH-----------------------------------------------------------------------
Confidence 999999542
Q ss_pred hhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 644 EDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 644 ~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
++..+++++...|++.++....+.... .|+++..+..+|. ++..+|++++|+.+|++.+.
T Consensus 182 --------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~-----~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 182 --------------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA-----AYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp --------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH-----HHHHHT-HHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH-----Hhcccccccccccccccccc
Confidence 234567788899999998888888776 4677777766665 55578999999999999883
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVT 802 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~ 802 (854)
. .|. ++..+.++|.++...|+.++|.++.+
T Consensus 243 --~--------------------------------------~p~----------d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 243 --L--------------------------------------NPD----------DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp --H--------------------------------------STT-----------HHHHHHHHHHHT-------------
T ss_pred --c--------------------------------------ccc----------cccccccccccccccccccccccccc
Confidence 1 132 56777889999999999999999999
Q ss_pred HHHhh
Q 003047 803 QALSI 807 (854)
Q Consensus 803 ~Al~~ 807 (854)
+++..
T Consensus 273 ~~~~~ 277 (280)
T PF13429_consen 273 QALRL 277 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 98764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=150.90 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=199.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
-+++|+..|...+|.+.++..++.. ..++.+.+++.+|....+...|+..|...+. ..|. +...+..++.||..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld-~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLD-SFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhh-cCCc-hhhhhhhhHHHHHHH
Confidence 4789999999999999999999987 4678889999999999999999999999999 7884 466777889999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
+++++|+++|+.+++. .+.+.++.--+|.-|+.-++++-|+.+|+++|++--.+|.++.++|.|
T Consensus 304 ~~~~~a~~lYk~vlk~----------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL----------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred HhHHHHHHHHHHHHhc----------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 9999999999999998 234556666778899999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhh
Q 003047 487 CLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHL 566 (854)
Q Consensus 487 ~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L 566 (854)
|.... .++++..||++|+..
T Consensus 368 C~yaq------------------------------------------------------------Q~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 368 CLYAQ------------------------------------------------------------QIDLVLPSFQRALST 387 (478)
T ss_pred HHhhc------------------------------------------------------------chhhhHHHHHHHHhh
Confidence 99311 136688999999988
Q ss_pred cCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhH
Q 003047 567 LNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDV 646 (854)
Q Consensus 567 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~ 646 (854)
..+..++
T Consensus 388 at~~~~a------------------------------------------------------------------------- 394 (478)
T KOG1129|consen 388 ATQPGQA------------------------------------------------------------------------- 394 (478)
T ss_pred ccCcchh-------------------------------------------------------------------------
Confidence 7764431
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 647 CRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 647 ~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
..+|++|++|....||+..|..+++-+|. ++++..++.+||.+-+ ..|++++|...|+-+-
T Consensus 395 ---------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~-----r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 395 ---------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA-----RSGDILGARSLLNAAK 456 (478)
T ss_pred ---------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh-----hcCchHHHHHHHHHhh
Confidence 14689999999999999999999999997 8999999999998766 4699999999999888
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=144.14 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+-.+.-|+.+|+...|+..++++++.+ |++..+|..+|.+|...|..+.|-+.|++++. .+|+ +..++||.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~-~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALS-LAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCC-ccchhhhhhHH
Confidence 55566788999999999999999999999 99999999999999999999999999999999 7994 78999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
++.+|+|++|..+|++|+.. |. .+..+.+|.|+|.|.++.|+++.|.++|+++|+++|+++.....
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-PA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-CC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 99999999999999999996 11 12345789999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 483 LAECCLM 489 (854)
Q Consensus 483 La~~~i~ 489 (854)
|+...+.
T Consensus 179 ~a~~~~~ 185 (250)
T COG3063 179 LARLHYK 185 (250)
T ss_pred HHHHHHh
Confidence 9988773
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-10 Score=143.41 Aligned_cols=344 Identities=11% Similarity=-0.023 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
...|..+-..|...|++++|.++|+++.+.--.-+. .++..++..|...|+.++|..+++.+.+. ++. ++
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~----~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~----Pd- 506 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC----KLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVE----AN- 506 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCC----CC-
Confidence 456767778889999999999999998874222222 25777889999999999999776555431 110 10
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
.
T Consensus 507 -------------------------------v------------------------------------------------ 507 (1060)
T PLN03218 507 -------------------------------V------------------------------------------------ 507 (1060)
T ss_pred -------------------------------H------------------------------------------------
Confidence 0
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
.-|.. -...|...|++++|.+.++........|+ ...+..+-..|...|++++|.++|.+...
T Consensus 508 -----------vTyna-----LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 508 -----------HTFGA-----LIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred -----------HHHHH-----HHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111 13456778999999999998877664355 56677788889999999999999999865
Q ss_pred c---cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH
Q 003047 386 R---TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA 462 (854)
Q Consensus 386 ~---~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA 462 (854)
. ..|+ ...|+.|-..|.+.|++++|++.|++..+.. ..+....|..+...|.+.|++++|
T Consensus 571 ~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---------------i~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 571 ETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYN---------------IKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred hcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCChHHHHHHHHHHHhcCCHHHH
Confidence 1 3563 5688889999999999999999999987751 134567888889999999999999
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCC
Q 003047 463 ARCFQKSSLV--FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540 (854)
Q Consensus 463 l~~y~kAL~l--~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~ 540 (854)
++.|.+.... .|+ ...|..|..+|. +.+
T Consensus 634 l~lf~eM~~~Gv~PD-~~TynsLI~a~~---k~G---------------------------------------------- 663 (1060)
T PLN03218 634 LSIYDDMKKKGVKPD-EVFFSALVDVAG---HAG---------------------------------------------- 663 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHH---hCC----------------------------------------------
Confidence 9999998875 465 456777766655 210
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccccc
Q 003047 541 SSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTA 620 (854)
Q Consensus 541 ~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (854)
.++.|...|+.+.........
T Consensus 664 -----------~~eeA~~l~~eM~k~G~~pd~------------------------------------------------ 684 (1060)
T PLN03218 664 -----------DLDKAFEILQDARKQGIKLGT------------------------------------------------ 684 (1060)
T ss_pred -----------CHHHHHHHHHHHHHcCCCCCH------------------------------------------------
Confidence 246678888776643211100
Q ss_pred CCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHH
Q 003047 621 NGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHI 698 (854)
Q Consensus 621 ~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~l 698 (854)
..+..|...|.+.|++.+|+..++++.. ..++...|..|..
T Consensus 685 ------------------------------------~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~- 727 (1060)
T PLN03218 685 ------------------------------------VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT- 727 (1060)
T ss_pred ------------------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 1234455678889999999999998875 3445566666555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
+|+..|++++|++.|+.... ..+ .| +.
T Consensus 728 ----gy~k~G~~eeAlelf~eM~~--~Gi------------------------------------~P-----------d~ 754 (1060)
T PLN03218 728 ----ALCEGNQLPKALEVLSEMKR--LGL------------------------------------CP-----------NT 754 (1060)
T ss_pred ----HHHHCCCHHHHHHHHHHHHH--cCC------------------------------------CC-----------CH
Confidence 66789999999999998772 110 13 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSI--LPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~--~P~~ 811 (854)
..|..|-.+++..|++++|.+++.++++. .|+.
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 67777888899999999999999998775 3554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-13 Score=135.97 Aligned_cols=148 Identities=19% Similarity=0.130 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..++..+|.++...|++++|++.|++++. ..|. ...+++++|.+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALT-LNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCC-CHHHHHHHHHH
Confidence 44556888999999999999999999999 99999999999999999999999999999999 6774 56789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|..+|++++|+.+|++++.... .+.....++++|.++...|++++|..+|.+++..+|+++.+|..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 9999999999999999998511 12345688999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
+|.++.
T Consensus 175 la~~~~ 180 (234)
T TIGR02521 175 LAELYY 180 (234)
T ss_pred HHHHHH
Confidence 998877
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=147.58 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 336 NLKHAKREVKLAMNIAR-GK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~-~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
+.+.++..+..++.... .| +.+.+++.+|.+|...|++++|+..|++++. .+|+ .+.+|+++|.+|..+|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~-l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA-LRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777888886430 03 3377899999999999999999999999999 7895 6889999999999999999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
..|++++++ .|....+++++|.++...|++++|+++|+++++++|+++.
T Consensus 119 ~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 119 EAFDSVLEL----------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999998 3456789999999999999999999999999999999984
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-13 Score=135.16 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
..+..++++|.+|+..|+|++|++.++++++..+... .+...++.+|...|++++|+ .++++++... +
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~al~~~----~ 96 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY-----LAYLALALYYQQLGELEKAE---DSFRRALTLN----P 96 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHhhC----C
Confidence 3577999999999999999999999999998543322 25677889999999999998 5667776543 1
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
.. .
T Consensus 97 ~~------------------------------~----------------------------------------------- 99 (234)
T TIGR02521 97 NN------------------------------G----------------------------------------------- 99 (234)
T ss_pred CC------------------------------H-----------------------------------------------
Confidence 00 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
......+.+|..+|++++|++.+++++.....|.....+..+|.++...|++++|++.|.++
T Consensus 100 ------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 100 ------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred ------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01223466777889999999999999886433566778888999999999999999999999
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
+. .+|. ...++..+|.+|..+|++++|+.+|++++.. .+.....+..++.++...|++++|.
T Consensus 162 ~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 162 LQ-IDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT----------------YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HH-hCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 98 6774 4667888999999999999999999999887 1234566677889999999999999
Q ss_pred HHHHHHHHhcC
Q 003047 464 RCFQKSSLVFY 474 (854)
Q Consensus 464 ~~y~kAL~l~P 474 (854)
.+.+.+....|
T Consensus 224 ~~~~~~~~~~~ 234 (234)
T TIGR02521 224 RYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhCc
Confidence 98888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-12 Score=145.99 Aligned_cols=309 Identities=13% Similarity=0.064 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
.++.....+|+..+..|+|+.|.+.+.++.+..|+..-.+.-.|.+..-.+ ++..+...+.++.+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g------~~~~A~~~l~~a~~~-------- 147 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG------DEARANQHLEEAAEL-------- 147 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHh--------
Confidence 467888999999999999999999999999998887666665565544333 333455555555521
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhH-HHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVS-VAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
.|+.. ......+.++...|+|++|+..++++.+.. |.+.
T Consensus 148 -------------------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~-- 187 (409)
T TIGR00540 148 -------------------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHK-- 187 (409)
T ss_pred -------------------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH--
Confidence 11121 134456999999999999999999999954 4333
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhh-hhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAAT-VNA 262 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 262 (854)
.+..+++.+|...|++++|++.+..+.+..... +. +.... ...
T Consensus 188 --~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~----~~------------------------------~~~~l~~~a 231 (409)
T TIGR00540 188 --EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD----DE------------------------------EFADLEQKA 231 (409)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC----HH------------------------------HHHHHHHHH
Confidence 267888999999999999998777776653211 00 00000 000
Q ss_pred hhhhhhhhhhhhhh-hhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHH
Q 003047 263 SENALSRTLSEETL-EDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAK 341 (854)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~ 341 (854)
..+.+.....++.. ..... . ...+....-...+.+..+..++..|+.++|.
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~---------------------------~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNW---------------------------W-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHH---------------------------H-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 00000000000000 00000 0 0001000012356777889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLAL--FLKSQLEYARRNHRKAIKLLLALSNRTEMGISS--MFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~--~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a--~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
+.++++++.. |++.... .+........++.+++++.++++++ .+|+ ++ .++..+|.++.++|++++|.++|+
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-NVDD-KPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH-hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999 9998642 4455555667899999999999999 7885 56 678889999999999999999999
Q ss_pred H--HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 418 K--ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 418 k--AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+ ++.. .++.+.+..+|.++...|+.++|.++|++++..
T Consensus 360 ~a~a~~~-----------------~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 360 NVAACKE-----------------QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhHHhhc-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 5554 234556679999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-12 Score=142.41 Aligned_cols=306 Identities=13% Similarity=0.029 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
-.+.++.+.+..|+++.|.+.+.++.+.. |+...++++.|.++..+|++++|.++|.++.+ ..|+....+....+.+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~-~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAE-LAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCcCchHHHHHHHHH
Confidence 44567888888999999999999998888 88888888999999999999999999999887 5564322344446888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...|++++|...+++.++. .|.+..++.-++.+++..|++++|.+.+.+.++....++.....
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~----------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEM----------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 88999999999999998887 34566788888999999999999999999888875555443322
Q ss_pred HHH-HHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 483 LAE-CCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 483 La~-~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
+-. .+......+ . .+.+...+.
T Consensus 227 l~~~a~~~~l~~~-------------------------------------~--------------------~~~~~~~L~ 249 (409)
T TIGR00540 227 LEQKAEIGLLDEA-------------------------------------M--------------------ADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHH-------------------------------------H--------------------HhcCHHHHH
Confidence 211 111000100 0 011344555
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
.++...|..... +
T Consensus 250 ~~~~~~p~~~~~-------------------------------------------------~------------------ 262 (409)
T TIGR00540 250 NWWKNQPRHRRH-------------------------------------------------N------------------ 262 (409)
T ss_pred HHHHHCCHHHhC-------------------------------------------------C------------------
Confidence 666666652210 0
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
..++..++..+...|++++|+...++++. .|+....... ++.....+..++.+++++.++++
T Consensus 263 --------------~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 263 --------------IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred --------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCCCChHHHHHHHHHH
Confidence 02345668889999999999999999998 6776532211 11222334568889999999998
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
++ .+ |. +| ....+..||.++..+|+|++|.+.
T Consensus 326 lk--~~--------------------------------------p~-----~~---~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 326 AK--NV--------------------------------------DD-----KP---KCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HH--hC--------------------------------------CC-----Ch---hHHHHHHHHHHHHHcccHHHHHHH
Confidence 83 11 22 11 226778899999999999999999
Q ss_pred HH--HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 801 VT--QALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 801 ~~--~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
|+ ++++..|+... ...++-++.++|+.++|.+++++
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 57778887754 44778888899999999999998
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=151.38 Aligned_cols=266 Identities=18% Similarity=0.139 Sum_probs=198.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
|.-......+|..|..+|+|++|+..++.++.. ..| ......+++|.+|..++++.+|+..|++||.+....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl-~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHL-VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 777778888999999999999999999999983 266 456777789999999999999999999999996544
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhccccCCCCC
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-----QPLLWLRLAECCLMALEKGLVAPGRS 501 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-----~~~aw~~La~~~i~~~~~~~~e~~~~ 501 (854)
...+ .+..+.++.||+..|...|++++|..++++|+.|.-. .+++-..|.+.......
T Consensus 275 ~G~~--------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~--------- 337 (508)
T KOG1840|consen 275 FGED--------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS--------- 337 (508)
T ss_pred cCCC--------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH---------
Confidence 3221 2445788999999999999999999999999998854 34443333332220000
Q ss_pred CCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCC
Q 003047 502 LSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPS 581 (854)
Q Consensus 502 ~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~ 581 (854)
+...++|...|++|+.+.-+.....
T Consensus 338 ------------------------------------------------~~~~Eea~~l~q~al~i~~~~~g~~------- 362 (508)
T KOG1840|consen 338 ------------------------------------------------MNEYEEAKKLLQKALKIYLDAPGED------- 362 (508)
T ss_pred ------------------------------------------------hcchhHHHHHHHHHHHHHHhhcccc-------
Confidence 0124789999999999987533210
Q ss_pred CCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHH
Q 003047 582 NSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLAN 661 (854)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~ 661 (854)
+ ..-..+..+
T Consensus 363 -----------------------------------------~-----------------------------~~~a~~~~n 372 (508)
T KOG1840|consen 363 -----------------------------------------N-----------------------------VNLAKIYAN 372 (508)
T ss_pred -----------------------------------------c-----------------------------hHHHHHHHH
Confidence 0 001134678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC----C--ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchh
Q 003047 662 LAYVELEMENPVKALAAARSLLELP----D--CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGED 735 (854)
Q Consensus 662 la~v~l~lg~~~~Al~~~~~lL~~p----~--~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~ 735 (854)
||.+++.+|++.+|.+.+++++... . ....-+.+.+ +|+++..++++.+|...|.++.-
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~--la~~~~~~k~~~~a~~l~~~~~~------------- 437 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ--LAEAYEELKKYEEAEQLFEEAKD------------- 437 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH--HHHHHHHhcccchHHHHHHHHHH-------------
Confidence 9999999999999999999999522 2 3333344444 56688899999999999999982
Q ss_pred hhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 736 CEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 736 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|+..-+ | .+|. .-..+.|||.+|..+|++|+|+++.++++..
T Consensus 438 ---i~~~~g--------------------~--~~~~-----~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 438 ---IMKLCG--------------------P--DHPD-----VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred ---HHHHhC--------------------C--CCCc-----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 221111 1 1222 5677899999999999999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=141.75 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
++..+|..+...|++.+|....++++..+.++......+ .+..+++++|+..++..++ .
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~-------~l~~~~~~~al~~~e~~lk--~------------ 323 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIP-------RLKTNNPEQLEKVLRQQIK--Q------------ 323 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHh-------hccCCChHHHHHHHHHHHh--h------------
Confidence 456778899999999999999999999777775443333 3456999999999999993 1
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
.|. ++..++-+|.++..+|++++|.+.|++++++.|++.. ...
T Consensus 324 --------------------------~P~----------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~ 366 (398)
T PRK10747 324 --------------------------HGD----------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAW 366 (398)
T ss_pred --------------------------CCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHH
Confidence 133 5778889999999999999999999999999998754 345
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 003047 818 AIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~~ 838 (854)
++-++.++|+.++|.++++++
T Consensus 367 La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666999999999999985
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-12 Score=141.01 Aligned_cols=352 Identities=13% Similarity=0.098 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC----CCChhHH--------------HHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDG----CTDPKKL--------------LEALN 88 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~----~~~~~~~--------------~~~l~ 88 (854)
++-++..|..++-.|+|++|+..|.+-|+.+|++...+.+++.++.-... |++|.=+ ..++.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 46689999999999999999999999999999999999988877632210 1111100 11111
Q ss_pred HHHHHHHHHHhhhcccCCCCCC----------------C--CCcccCCCCCCCccccc-ccccccCCcccccchh-----
Q 003047 89 NVKNKSEELARATGEQTEGGGN----------------I--GSKVGLGSKGSGVVGNQ-VSAANSGSLVYMDEFD----- 144 (854)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----------------~--g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 144 (854)
.+...++ ..|..++. + +.-+..++..+.....- +.-..+..... |..+
T Consensus 150 ~~l~~~~-------~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-d~~ee~~~k 221 (539)
T KOG0548|consen 150 KILEIIQ-------KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIE-DNTEERRVK 221 (539)
T ss_pred HHHHHhh-------cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccc-hhHHHHHHH
Confidence 1111111 11111111 1 11111222222111111 11111111110 1122
Q ss_pred -hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 145 -VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 145 -~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
.+.-.-++|...+..++|..|++.|.+++..-..+ .-..+.+.+|+..+.|.+.+. ..++++..+.
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~i------t~~~n~aA~~~e~~~~~~c~~---~c~~a~E~gr---- 288 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELATDI------TYLNNIAAVYLERGKYAECIE---LCEKAVEVGR---- 288 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhh------HHHHHHHHHHHhccHHHHhhc---chHHHHHHhH----
Confidence 45566688999999999999999999999954221 225556799999999999984 3455544331
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+...-. +.+.. ++.
T Consensus 289 -------------------------------e~rad~----klIak-------------------------------~~~ 302 (539)
T KOG0548|consen 289 -------------------------------ELRADY----KLIAK-------------------------------ALA 302 (539)
T ss_pred -------------------------------HHHHHH----HHHHH-------------------------------HHH
Confidence 111000 01110 111
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHH--------HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHH
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVR--------FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRK 375 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~--------lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~k 375 (854)
-+|.+|+.. +.+...+.+|..- +.-..+..++++++.+...-++ |+-..--...|+-++..|+|.+
T Consensus 303 r~g~a~~k~----~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 303 RLGNAYTKR----EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HhhhhhhhH----HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHH
Confidence 144444443 3444444444221 2223345666777777777777 8888888899999999999999
Q ss_pred HHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 376 AIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 376 Al~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
|++.|.++++ .+|+ .+..|.|.+.+|.++|.+..|+...++++++ .|.....|+.-|.++..
T Consensus 377 Av~~YteAIk-r~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----------------~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 377 AVKHYTEAIK-RDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL----------------DPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------CchHHHHHHHHHHHHHH
Confidence 9999999999 6885 6889999999999999999999999999998 35567889999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 456 CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+.+|++|.++|+++++.+|++..+.-.+..|.-.
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=140.13 Aligned_cols=308 Identities=13% Similarity=0.050 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEY-FRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
..++...+.+|+..+..|+|++|.+.+.+.-+. .+.|.+++.++ +.. ... .++..+...+.++.+.
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~lla-A~aA~~~-----g~~~~A~~~l~~A~~~------ 147 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLA-AEAAQQR-----GDEARANQHLERAAEL------ 147 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHH-HHHHHHC-----CCHHHHHHHHHHHHhc------
Confidence 347788899999999999999999777765443 23466666553 333 232 3445577777776631
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHH-HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVA-KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
++++... ..-.+.++...|+|++|+.+++++.+..+...+
T Consensus 148 ---------------------------------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 148 ---------------------------------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred ---------------------------------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 2333222 224489999999999999999999995544333
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
+..++..+|...|++++|+++|..+++...+.... -.+ .+.. .+.
T Consensus 189 -----al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~----------~~~-------------------l~~~-a~~ 233 (398)
T PRK10747 189 -----VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH----------RAM-------------------LEQQ-AWI 233 (398)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH----------HHH-------------------HHHH-HHH
Confidence 57778899999999999999998888776442000 000 0000 000
Q ss_pred hhhhhhhhhhh-hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLS-EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
.........-+ +...++-..+ -..+ .-...+.+.-++.++..|+.++|
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~l-----------------------p~~~--------~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQ-----------------------SRKT--------RHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhC-----------------------CHHH--------hCCHHHHHHHHHHHHHCCCHHHH
Confidence 00000000000 0011110010 0000 00123555668999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
.+.+++.++. |.++......+.+ ..++++++++.+++.++ ..|+ ++..+..+|.++...|++++|..+|++++
T Consensus 283 ~~~L~~~l~~---~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk-~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 283 QQIILDGLKR---QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK-QHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHhc---CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999995 5566655555554 44999999999999999 7884 67788889999999999999999999999
Q ss_pred HhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 421 SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 421 ~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.. .|+...+..++.++...|+.++|.++|++++.+.
T Consensus 356 ~~-----------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 356 KQ-----------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hc-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 97 2345566678999999999999999999998865
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=152.34 Aligned_cols=256 Identities=14% Similarity=0.104 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
=|.+|...+.+|...+|.-.|+.+...+|.++++|--||+++....+ -..++..+++.++
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~------E~~ai~AL~rcl~-------------- 347 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN------EQNAISALRRCLE-------------- 347 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc------hHHHHHHHHHHHh--------------
Confidence 48899999999999999999999999999999999999999775432 2346667777763
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+ ||+|-.++..+|+.|.+.|.-.+|+++|.+=+....+ +
T Consensus 348 ------------------------------L-dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~---y------- 386 (579)
T KOG1125|consen 348 ------------------------------L-DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK---Y------- 386 (579)
T ss_pred ------------------------------c-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc---c-------
Confidence 2 6778889999999999999999999999777664332 1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
. ++- ... .+.+. -++++++ +
T Consensus 387 --------------~-----~l~----~a~-~~~~~-----------~~~~s~~---~---------------------- 406 (579)
T KOG1125|consen 387 --------------V-----HLV----SAG-ENEDF-----------ENTKSFL---D---------------------- 406 (579)
T ss_pred --------------h-----hcc----ccC-ccccc-----------cCCcCCC---C----------------------
Confidence 0 000 000 00000 0000000 0
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
. ..+.. + .++|+ .+..
T Consensus 407 -----------~-----------------------------------~~l~~-i----~~~fL-------------eaa~ 422 (579)
T KOG1125|consen 407 -----------S-----------------------------------SHLAH-I----QELFL-------------EAAR 422 (579)
T ss_pred -----------H-----------------------------------HHHHH-H----HHHHH-------------HHHH
Confidence 0 00000 0 11222 2223
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 350 IARGK--DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 350 ~~~~P--~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
.. | .+++.+.-+|.+|+..|+|++|++||+.+|. .+|. +...||.||..+..-.+.++||..|++||++
T Consensus 423 ~~--~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~-v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----- 493 (579)
T KOG1125|consen 423 QL--PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ-VKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL----- 493 (579)
T ss_pred hC--CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh-cCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----
Confidence 33 7 7899999999999999999999999999999 7995 6889999999999999999999999999999
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ----------PLLWLRLAECCLMA 490 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~----------~~aw~~La~~~i~~ 490 (854)
.|....+.||+|++++.+|-|+||..+|..||.+.+.+ -.+|..|=.+++..
T Consensus 494 -----------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 494 -----------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred -----------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 35556789999999999999999999999999998772 25788887666643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-09 Score=137.80 Aligned_cols=294 Identities=11% Similarity=-0.019 Sum_probs=225.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g 407 (854)
..|...|++++|.+.++...+... .-|...|..+-..|.+.|++++|+++|...... ..| +...|+.|...|.+.|
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P--D~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP--DRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCC
Confidence 456788999999999999988762 236778888888999999999999999998763 356 3678999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-YKQPLLWLRLAEC 486 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-P~~~~aw~~La~~ 486 (854)
++++|...|.+....... ..++..+|..+-.+|.+.|++++|++.|++..+.. +.++..|..+..+
T Consensus 557 ~~deA~~lf~eM~~~~~g-------------i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHP-------------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred CHHHHHHHHHHHHHhcCC-------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999998764110 12456778888899999999999999999999876 4567788888887
Q ss_pred HHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhh
Q 003047 487 CLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHL 566 (854)
Q Consensus 487 ~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L 566 (854)
|. +.+ .+++|...|+.....
T Consensus 624 y~---k~G---------------------------------------------------------~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 624 CS---QKG---------------------------------------------------------DWDFALSIYDDMKKK 643 (1060)
T ss_pred HH---hcC---------------------------------------------------------CHHHHHHHHHHHHHc
Confidence 77 211 236688888766542
Q ss_pred cCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhH
Q 003047 567 LNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDV 646 (854)
Q Consensus 567 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~ 646 (854)
.-. + .
T Consensus 644 Gv~--P----------------------------------------------------------------------D--- 648 (1060)
T PLN03218 644 GVK--P----------------------------------------------------------------------D--- 648 (1060)
T ss_pred CCC--C----------------------------------------------------------------------C---
Confidence 111 0 0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 647 CRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 647 ~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
...+..+..++...|++.+|+..+++++. .+++...|..|.. +|+..|++++|++.|+....
T Consensus 649 ---------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~-----ay~k~G~~eeA~~lf~eM~~-- 712 (1060)
T PLN03218 649 ---------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG-----ACSNAKNWKKALELYEDIKS-- 712 (1060)
T ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH--
Confidence 01234455678899999999999999997 3556677777766 66789999999999998762
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
..+ .| +...|..|-..|+..|++++|.+.+++.
T Consensus 713 ~g~------------------------------------~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 713 IKL------------------------------------RP-----------TVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred cCC------------------------------------CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 110 13 3677899999999999999999999987
Q ss_pred Hhh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 805 LSI--LPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 805 l~~--~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
... .|+. .....++..+.+.|++++|+.++..
T Consensus 746 ~~~Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 746 KRLGLCPNT-ITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 4654 3344444566699999999999988
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=149.15 Aligned_cols=259 Identities=16% Similarity=0.059 Sum_probs=185.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
+..-|..|+.+|+|+.|+.+|++++++ .|.=...+.++|++|...+. +.+++.-+.+++...-.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k------~~eAv~ly~~AL~i~e~-- 273 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK------YDEAVNLYEEALTIREE-- 273 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHH--
Confidence 334788999999999999999999997 22223445568888776654 44455555555532100
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
....++|..+..+.|+|+.|+..|+|++|..++++++.+.+.+.-
T Consensus 274 -----------------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 274 -----------------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG 318 (508)
T ss_pred -----------------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc
Confidence 012247889999999999999999999999999999998776322
Q ss_pred ---hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhh
Q 003047 182 ---TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAA 258 (854)
Q Consensus 182 ---~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (854)
......+..++.++...+++++|. .++++++.+-...
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~al~i~~~~------------------------------------- 358 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAK---KLLQKALKIYLDA------------------------------------- 358 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHhh-------------------------------------
Confidence 223345566778888888999887 4566776553100
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHH
Q 003047 259 TVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLK 338 (854)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~ 338 (854)
+. + .
T Consensus 359 ----------------------------~g---~--------------------------------------------~- 362 (508)
T KOG1840|consen 359 ----------------------------PG---E--------------------------------------------D- 362 (508)
T ss_pred ----------------------------cc---c--------------------------------------------c-
Confidence 00 0 0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+ |.-+..+..+|.+|+.+|+|++|.++|++++.+ .++ .....+++||..|.+++++.+
T Consensus 363 ------------~--~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 363 ------------N--VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred ------------c--hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHHHHhcccch
Confidence 0 112234556777788888888888888888763 133 346788899999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|...|.+++.+.+..... .+.-...+-||+.+|-.+|++++|+++.++++.
T Consensus 428 a~~l~~~~~~i~~~~g~~---------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPD---------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCC---------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999997333321 123456788999999999999999999888774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-12 Score=139.18 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHhhhccCCCccHH
Q 003047 316 TVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR-NHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g-~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
.++|.....++++- +...++.++|+....+++.++ |++..++..++.++...| ++++|++++++++. .+|. +..
T Consensus 33 ~~~~~~a~~~~ra~-l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-~npk-nyq 107 (320)
T PLN02789 33 TPEFREAMDYFRAV-YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE-DNPK-NYQ 107 (320)
T ss_pred CHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HCCc-chH
Confidence 47788888888664 666789999999999999999 999999999999999998 68999999999999 7884 678
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKY--HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~--~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+|++.|.++.++|+. ++++.+++++|.. .+.+..+|+++|.++...|++++|++++.++|++
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~----------------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSL----------------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999984 7889999999998 4567899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 003047 473 FYKQPLLWLRLAECCL 488 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i 488 (854)
+|.+..+|.+++.+..
T Consensus 172 d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 172 DVRNNSAWNQRYFVIT 187 (320)
T ss_pred CCCchhHHHHHHHHHH
Confidence 9999999999997765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-10 Score=142.20 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
.|..+...+...|+..+|+..+++.....-.|+...+.+.+ .++...|++++|..+|+..... ..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll---~a~~~~g~v~ea~~~f~~M~~~-~g----------- 620 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL---CACSRSGMVTQGLEYFHSMEEK-YS----------- 620 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH---HHHhhcChHHHHHHHHHHHHHH-hC-----------
Confidence 35556667888899999999999888632222233333322 2678889999999999887720 00
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLT 817 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l 817 (854)
+ .| +...|..|..+++..|++++|.+.+++. .+.|+.. ++..
T Consensus 621 ---------------i----------~P-----------~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~-~~~a 662 (857)
T PLN03077 621 ---------------I----------TP-----------NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA-VWGA 662 (857)
T ss_pred ---------------C----------CC-----------chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH-HHHH
Confidence 0 13 3678889999999999999999999875 4567643 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHh-cCCCccccccc
Q 003047 818 AIYVDLMLGKSQEALAKLKY-CNHVRFLPSGL 848 (854)
Q Consensus 818 ~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~~ 848 (854)
++......|+.+.|....++ .+.-|.++..+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 33344578999998888877 56666665544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=132.52 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++ ++.+|.++...|++++|+++|++++. .+|. ...+++++|.++..+|++++|+.+|++++.
T Consensus 14 ~~~~~al~~~--p~~---~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSVD--PET---VYASGYASWQEGDYSRAVIDFSWLVM-AQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHcC--HHH---HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5678889999 885 56789999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
. .|.++.+++++|.++...|++++|+.+|++++.+.|+++..|..++.+++.+
T Consensus 87 l----------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 L----------------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred c----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 8 3567899999999999999999999999999999999999999999998853
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-12 Score=140.17 Aligned_cols=386 Identities=14% Similarity=0.036 Sum_probs=228.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
-.+|+..+..|+|+.|+.+|..++. .+|. +...|.|...+|..+|+|++|++-=.|...+ .|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~-l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l----------------~p 67 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIM-LSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL----------------NP 67 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHc-cCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc----------------CC
Confidence 4578999999999999999999999 7885 6788999999999999999999999999998 45
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccce
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRY 520 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~ 520 (854)
..+..|..+|.+++-+|+|++|+..|.+.|+.+|+|..+...|+++....... -+. +.++- .|.+
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~--~~~-----~~~p~--------~~~~ 132 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA--DQL-----FTKPY--------FHEK 132 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh--hhh-----ccCcH--------HHHH
Confidence 56789999999999999999999999999999999999999999988321111 000 00000 0111
Q ss_pred eeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccc
Q 003047 521 LVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLN 600 (854)
Q Consensus 521 l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (854)
.+..|..+......||.+-+...+..+.. .++++.+..-........+...-
T Consensus 133 ------------------------l~~~p~t~~~~~~~~~~~~l~~~~~~p~~---l~~~l~d~r~m~a~~~l~~~~~~- 184 (539)
T KOG0548|consen 133 ------------------------LANLPLTNYSLSDPAYVKILEIIQKNPTS---LKLYLNDPRLMKADGQLKGVDEL- 184 (539)
T ss_pred ------------------------hhcChhhhhhhccHHHHHHHHHhhcCcHh---hhcccccHHHHHHHHHHhcCccc-
Confidence 12223333444566777777777665432 33333221111000000000000
Q ss_pred ccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 601 HKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAAR 680 (854)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~ 680 (854)
-.-..+..++ .....+.... ...-+...+............-...+|...+.-.++..|+.++.
T Consensus 185 --~~~~~~~~~~-------~~~~~p~~~~-------~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 185 --LFYASGIEIL-------ASMAEPCKQE-------HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred --cccccccccC-------CCCCCccccc-------CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0000000000 0000000000 00000000000111112222334556666666666666666666
Q ss_pred HHHcCCCChHHHHHHHHHH------------------------------------HHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 681 SLLELPDCSRIYIFLGHIY------------------------------------AAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 681 ~lL~~p~~~~~~~~la~lY------------------------------------~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
.+++......-+.+.|++| .+.++..+++++.|+.+|.+++..-
T Consensus 249 ~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 249 KALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 6665333332222222222 2346777899999999999988421
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
...++--+..+..+.+.+.. ..+.+ .| . .+.---+-|.-+...|+|..|.+.|.+|
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e-------~~a~~-------~p-----e-----~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAE-------RKAYI-------NP-----E-----KAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHH-------HHHhh-------Ch-----h-----HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 11111112222222222211 01101 12 1 2444455688899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 805 LSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 805 l~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
+..+|+++...-+++++++++|++..|+.-.+. ++.-|.-+.|
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999999999999988877 5554544433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-09 Score=127.13 Aligned_cols=429 Identities=16% Similarity=0.034 Sum_probs=281.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.-..||.++..|...|.-.+|+.++++.+...+...+.. ++++-..++ .+++..+.+.++|-.|++...... +
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s---~~Lmasklc--~e~l~~~eegldYA~kai~~~~~~--~ 428 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS---VLLMASKLC--IERLKLVEEGLDYAQKAISLLGGQ--R 428 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch---HHHHHHHHH--HhchhhhhhHHHHHHHHHHHhhhh--h
Confidence 345899999999999999999999999999776665542 344444554 345555556668999988643100 0
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
+ .. .+..+-.
T Consensus 429 ~-----------------------------~l-----------------------------------------~~~~~l~ 438 (799)
T KOG4162|consen 429 S-----------------------------HL-----------------------------------------KPRGYLF 438 (799)
T ss_pred h-----------------------------hh-----------------------------------------hhhHHHH
Confidence 0 00 0112223
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+|.+|....-... +.-.|- ....+++..++++++.+ |+|+.+.|.++..|-.+++.+.|..+..+++
T Consensus 439 lGi~y~~~A~~a~-----~~seR~------~~h~kslqale~av~~d--~~dp~~if~lalq~A~~R~l~sAl~~~~eaL 505 (799)
T KOG4162|consen 439 LGIAYGFQARQAN-----LKSERD------ALHKKSLQALEEAVQFD--PTDPLVIFYLALQYAEQRQLTSALDYAREAL 505 (799)
T ss_pred HHHHHHhHhhcCC-----ChHHHH------HHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444433210000 001111 12356889999999999 9999999999999999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
+ ..+.+.+.+|.-|+.++...+++.+|+....-+|...+ .+...+.-...+-...++.++|+.
T Consensus 506 ~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----------------~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 506 A-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----------------DNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred H-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----------------hhhhhchhhhhhhhhcccHHHHHH
Confidence 9 65667788999999999999999999999999999733 222333333444555899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
.+...|.+....+.+-..+++.-....+. ++-+...
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~--------------------------~l~la~~------------------ 604 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKA--------------------------GLHLALS------------------ 604 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhc--------------------------ccccCcc------------------
Confidence 99999999888877777777433311110 0111111
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
....|..-.+.+..+.-.... +.+++..-.+. +. ..|
T Consensus 605 -------q~~~a~s~sr~ls~l~a~~~~---------------~~~se~~Lp~s-----------~~--------~~~-- 641 (799)
T KOG4162|consen 605 -------QPTDAISTSRYLSSLVASQLK---------------SAGSELKLPSS-----------TV--------LPG-- 641 (799)
T ss_pred -------cccccchhhHHHHHHHHhhhh---------------hcccccccCcc-----------cc--------cCC--
Confidence 112244555555554442111 00000000000 00 000
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeA 703 (854)
|.+ .-.+...++...+.+++..++.++|..|..++-. .|-.+..|+..|.++..
T Consensus 642 -----------------~~~------~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-- 696 (799)
T KOG4162|consen 642 -----------------PDS------LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV-- 696 (799)
T ss_pred -----------------CCc------hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH--
Confidence 000 1111124455667788888999999888888776 67777888888887664
Q ss_pred HHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 003047 704 LCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVN 783 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~N 783 (854)
.|...||.++|.-++ ..| |. .+.....
T Consensus 697 ---~~~~~EA~~af~~Al--~ld--------------------------------------P~----------hv~s~~A 723 (799)
T KOG4162|consen 697 ---KGQLEEAKEAFLVAL--ALD--------------------------------------PD----------HVPSMTA 723 (799)
T ss_pred ---HHhhHHHHHHHHHHH--hcC--------------------------------------CC----------CcHHHHH
Confidence 589999999999888 333 32 2333456
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 784 IAAMFAMQGEFERAHH--FVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 784 La~~~~~~g~~e~A~~--~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
||-++.+.|+-.-|.+ .++-|++++|.++++|..++-+.-++|+.++|-..+.. .+.-++.|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7888888887777777 88888888888888888888888888888888888876 55444444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=137.17 Aligned_cols=217 Identities=16% Similarity=0.089 Sum_probs=178.8
Q ss_pred HHHHH-HHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 147 VAKLN-IAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 147 ~~~~n-~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
|.|-+ +|.+|+++|.+.+|.+.++..++..+- .| ..++|..||....++..|+.++ ..-+... +
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~d-----TfllLskvY~ridQP~~AL~~~---~~gld~f----P-- 287 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PD-----TFLLLSKVYQRIDQPERALLVI---GEGLDSF----P-- 287 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hh-----HHHHHHHHHHHhccHHHHHHHH---hhhhhcC----C--
Confidence 44444 599999999999999999999996543 44 2667789999999999998543 3222221 0
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
.+
T Consensus 288 -------------------------------------------------------------~~----------------- 289 (478)
T KOG1129|consen 288 -------------------------------------------------------------FD----------------- 289 (478)
T ss_pred -------------------------------------------------------------ch-----------------
Confidence 00
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
..+..-.+|+|-.+++.++|.+-+|.+++.+ |.|.++.--+|.-|+--++.+-|+.+|.+++.
T Consensus 290 ---------------VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 290 ---------------VTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred ---------------hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 0122224788889999999999999999999 99999999999999999999999999999998
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
. .- .++..++|+|.|.+-.++++.++..|++|+....+ .+..+.+|||+|.+....|++.-|.+|
T Consensus 353 m-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-------------~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 353 M-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-------------PGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred h-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-------------cchhhhhhhccceeEEeccchHHHHHH
Confidence 3 33 35789999999999999999999999999997321 123578999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 466 FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 466 y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|+-+|.-+|++..++.+||..-.
T Consensus 418 frlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHh
Confidence 99999999999999999996533
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=144.21 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=136.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+..++..|++-+|.-.++.++..+ |.+.++|..+|.+...+++-..||..++++++ .+| .+-.++..|+..|-..
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~-LdP-~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLE-LDP-TNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-cCC-ccHHHHHHHHHHHhhh
Confidence 5778899999999999999999999 99999999999999999999999999999999 899 4789999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhc---c----cCC-----c-cc--------------cccccCCccHHHHHHHHHHHHHCCCc
Q 003047 407 AKYHTSSVFLSKALSNSASL---R----KDK-----P-LK--------------LLTFSQDKSLLITYNCGLQYLACGKP 459 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l---~----~~~-----~-l~--------------~~~~~~~~~~~~~~nLG~~ll~~Gk~ 459 (854)
|--.+|++++.+=|...+.. . +.+ + +. -...+...++++..-||+.|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999988874321 0 000 1 00 11123336778888999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 460 VLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 460 eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++|++||+.||...|++..+|.+||-.+.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 99999999999999999999999996544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-11 Score=126.19 Aligned_cols=311 Identities=14% Similarity=0.120 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
..++..+.-|-..+-.|+|..|+..|-.+.+.+|++-.++|.-|-+|...+.-.- ++..+.+-++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~------al~Dl~rVle--------- 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA------ALQDLSRVLE--------- 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc------chhhHHHHHh---------
Confidence 5677888889999999999999999999999999999999999999987765221 4444444442
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+ .||-.-+....|+++..+|+++.|..=|.++++.-+..+..
T Consensus 101 -----------------------------------l-KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~-- 142 (504)
T KOG0624|consen 101 -----------------------------------L-KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV-- 142 (504)
T ss_pred -----------------------------------c-CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh--
Confidence 1 35566688899999999999999999999999954432222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
.+++..+--.++-+..-..+..+.+ ++|.
T Consensus 143 -------~eaqskl~~~~e~~~l~~ql~s~~~-----~GD~--------------------------------------- 171 (504)
T KOG0624|consen 143 -------LEAQSKLALIQEHWVLVQQLKSASG-----SGDC--------------------------------------- 171 (504)
T ss_pred -------HHHHHHHHhHHHHHHHHHHHHHHhc-----CCch---------------------------------------
Confidence 1222222222222211111111111 1111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
.++++|-..+ ++| +.|. ..+..+|+.+|+..|+.++|+..+
T Consensus 172 --------~~ai~~i~~l----lEi--~~Wd-------------------------a~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 172 --------QNAIEMITHL----LEI--QPWD-------------------------ASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred --------hhHHHHHHHH----Hhc--Ccch-------------------------hHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1222333332 222 2231 236678899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC----------------C
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----------------K 408 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----------------~ 408 (854)
+.+-.+. .++.+.+|-++.+++..|+.+.++.....+|+ .+|+. -..| -.|.+++ +
T Consensus 213 k~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-ldpdH-K~Cf----~~YKklkKv~K~les~e~~ie~~~ 284 (504)
T KOG0624|consen 213 KQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-LDPDH-KLCF----PFYKKLKKVVKSLESAEQAIEEKH 284 (504)
T ss_pred HHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-cCcch-hhHH----HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 99999999999999999999999999999999 67752 2222 2333433 4
Q ss_pred HHHHHHHHHHHHHhchhc---c-----------cCCc-----cc--cccc-cCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASL---R-----------KDKP-----LK--LLTF-SQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l---~-----------~~~~-----l~--~~~~-~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+.++++-.++.|+..|.. + ..+. +. ...+ ..+.+..++...+.+|+....|++|+..|
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444444444444433221 0 0000 00 0111 23445788889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 003047 467 QKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~ 486 (854)
++|+++++++..+..-+-.+
T Consensus 365 e~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 365 EKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHhcCcccHHHHHHHHHH
Confidence 99999999998887666544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=133.99 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC----------
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---------- 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---------- 390 (854)
+...+.|+.++...++.+.|..+--..+.++ +.+.+++++.|.+++..++.++|+..|+++++ .+|+
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALR-LDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhc-cChhhhhHHhHhhh
Confidence 3466789999999999999999999999999 99999999999999999999999999999999 6764
Q ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 391 -ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 391 -~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
..-.++-.-|.-.++.|+|.+|.++|..||.++|.- ..+.+.+|.|++.+...+|+..+|+..++.+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 122344455888899999999999999999996532 2345788999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 003047 470 SLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 470 L~l~P~~~~aw~~La~~~i~ 489 (854)
+.|+|....++.+.|+|++.
T Consensus 314 l~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999984
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-09 Score=113.38 Aligned_cols=301 Identities=12% Similarity=-0.022 Sum_probs=208.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
++++...+...-+....-...... |+|..-+..+|.+++..|++++|+..|+++.- .+|. .....--.|..+...|
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~l--r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy-~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTL--RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPD-NVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccC--CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChh-hhhhHHHHHHHHHhcc
Confidence 555555555555556665566666 99999999999999999999999999999998 7884 4445555688888899
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+++.-.......+.+. +....-|+--|-.++..++++.|+.+-.|+++.+|++..++.-.|..+
T Consensus 281 ~~e~~~~L~~~Lf~~~----------------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKV----------------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred CHhhHHHHHHHHHhhh----------------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 9988888878777762 234566777788888889999999999999999999999988888877
Q ss_pred HHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhc
Q 003047 488 LMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLL 567 (854)
Q Consensus 488 i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~ 567 (854)
+...+ .+.|+..||.|.-|.
T Consensus 345 ~~~~R------------------------------------------------------------~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 345 IALER------------------------------------------------------------HTQAVIAFRTAQMLA 364 (564)
T ss_pred Hhccc------------------------------------------------------------hHHHHHHHHHHHhcc
Confidence 73111 255888888888888
Q ss_pred CCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccC--CchhHHHhhhccchhh
Q 003047 568 NYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKG--GTSLEVIQNSLSYYED 645 (854)
Q Consensus 568 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~--~~~~~~~~~~i~~~~~ 645 (854)
|.... .+++...+ ...++.++++.. .|.=+++++
T Consensus 365 p~rL~-----------~Y~GL~hs--------------------------YLA~~~~kEA~~~An~~~~~~~~------- 400 (564)
T KOG1174|consen 365 PYRLE-----------IYRGLFHS--------------------------YLAQKRFKEANALANWTIRLFQN------- 400 (564)
T ss_pred hhhHH-----------HHHHHHHH--------------------------HHhhchHHHHHHHHHHHHHHhhc-------
Confidence 87442 11111111 011222222211 000011111
Q ss_pred HhHHhhHHHHHHHHHHHH-HHHHHcC-CHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 646 VCRRENQMIKQALLANLA-YVELEME-NPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 646 ~~~~~~~~l~~~~l~~la-~v~l~lg-~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
... .|..+| .|++..- --..|...+++.|. .|...++-. -.||-+.+-|++.+++..|++.+.
T Consensus 401 ----sA~-----~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~-----~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 401 ----SAR-----SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN-----LIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred ----chh-----hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH-----HHHHHHHhhCccchHHHHHHHHHh
Confidence 001 122222 3322221 12678888888887 677666654 455666678999999999999993
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVT 802 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~ 802 (854)
+- | ...+|.-||.++..++.+.+|...|.
T Consensus 467 --~~--------------------------------------~-----------D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 467 --IF--------------------------------------P-----------DVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred --hc--------------------------------------c-----------ccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 10 2 35778899999999999999999999
Q ss_pred HHHhhCCCCHHHHHH
Q 003047 803 QALSILPRSTEATLT 817 (854)
Q Consensus 803 ~Al~~~P~~~~a~~l 817 (854)
.||+++|++-.++-.
T Consensus 496 ~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRG 510 (564)
T ss_pred HHHhcCccchHHHHH
Confidence 999999998654433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=134.29 Aligned_cols=133 Identities=9% Similarity=0.010 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLEL--PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~~--p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
+..|...|...|+..+|+..+++.+.. .++...|..+- .+|...|++++|.++|+..... ..+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-----~a~~~~g~~~~a~~~f~~m~~~-~g~--------- 458 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL-----SACRYSGLSEQGWEIFQSMSEN-HRI--------- 458 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHh-cCC---------
Confidence 344556788999999999999999864 33344443333 3788999999999999988731 000
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
.| +...|.-|..+|+..|++++|.+.+++. ...|+. .++.
T Consensus 459 ---------------------------~p-----------~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~-~~~~ 498 (697)
T PLN03081 459 ---------------------------KP-----------RAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTV-NMWA 498 (697)
T ss_pred ---------------------------CC-----------CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHH
Confidence 13 3566788999999999999999998874 344543 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 817 TAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.++-.....|+++.|..++++ ....|.++.
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 555556689999999999988 555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-10 Score=119.47 Aligned_cols=277 Identities=13% Similarity=0.073 Sum_probs=179.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHH----------
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSM---------- 394 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~---------- 394 (854)
|+-+|+.+|+-+.|+..+.+++++. |+...+....|.+++.+|.+++|+.-|..++. .+|.. +-.
T Consensus 78 RaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 78 RATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHH
Confidence 5666666677666777777777776 77777777777777777777777777776666 34421 011
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 395 --FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 395 --~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.+.....-+...|++.-||++..+.|++ .+.++..+...+.||...|++..|+.-++.+-.+
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----------------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEI----------------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 1111223344456666666666666665 3445556666677777777777777777777777
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
..++...++.+...++ . | ..
T Consensus 219 s~DnTe~~ykis~L~Y---~--------------------v-------------------------------------gd 238 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLY---T--------------------V-------------------------------------GD 238 (504)
T ss_pred cccchHHHHHHHHHHH---h--------------------h-------------------------------------hh
Confidence 7777777776666555 1 1 12
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
.+.+....|..|.|+|++..-
T Consensus 239 ~~~sL~~iRECLKldpdHK~C----------------------------------------------------------- 259 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKLC----------------------------------------------------------- 259 (504)
T ss_pred HHHHHHHHHHHHccCcchhhH-----------------------------------------------------------
Confidence 355777788888999996521
Q ss_pred hHHHhhhccchhhHhH--HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCh----HHHHHHHHHHHHHHHH
Q 003047 633 LEVIQNSLSYYEDVCR--RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCS----RIYIFLGHIYAAEALC 705 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~--~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~----~~~~~la~lY~aeAl~ 705 (854)
.|.+..++. ..+..++ -..+.++|.++++.+++++. .|..+ ..++.+-+.|.
T Consensus 260 -------f~~YKklkKv~K~les~e---------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~----- 318 (504)
T KOG0624|consen 260 -------FPFYKKLKKVVKSLESAE---------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR----- 318 (504)
T ss_pred -------HHHHHHHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc-----
Confidence 111111111 1122222 35688999999999999997 45423 23444444444
Q ss_pred hcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 003047 706 LLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIA 785 (854)
Q Consensus 706 ~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa 785 (854)
.-+.+-||+....+.+. .+ |. .+.++...|
T Consensus 319 ~d~~~~eAiqqC~evL~--~d--------------------------------------~~----------dv~~l~dRA 348 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--ID--------------------------------------PD----------DVQVLCDRA 348 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cC--------------------------------------ch----------HHHHHHHHH
Confidence 46899999999999882 11 32 577888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 786 AMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 786 ~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
-+|...-.|+.|++-|++|++.+|++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-10 Score=132.43 Aligned_cols=326 Identities=19% Similarity=0.164 Sum_probs=219.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCC
Q 003047 42 KFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKG 121 (854)
Q Consensus 42 ~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (854)
...++++.+++|.+++|+|+.+.|++++=|-..+ ++..++..+++++.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R------~l~sAl~~~~eaL~-------------------------- 506 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR------QLTSALDYAREALA-------------------------- 506 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH------hHHHHHHHHHHHHH--------------------------
Confidence 4568999999999999999999999996655444 34556777777662
Q ss_pred CCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH
Q 003047 122 SGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA 201 (854)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~ 201 (854)
++.-+++..|.-+|.++-.+++|..|+.+.+-.+...+..-.. ...-+.+-...++.
T Consensus 507 ------------------l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l-----~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 507 ------------------LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL-----MDGKIHIELTFNDR 563 (799)
T ss_pred ------------------hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh-----chhhhhhhhhcccH
Confidence 1123467799999999999999999999999888854442111 11122334445666
Q ss_pred HHHHHH----HHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 003047 202 FRSADV----LIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLE 277 (854)
Q Consensus 202 ~kA~~~----l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (854)
.+|+++ |..+|+--++.+..+ +| -...+-++-.--++.+..++.+-.+.. ..+. +..-.
T Consensus 564 e~~l~t~~~~L~~we~~~~~q~~~~--~g----~~~~lk~~l~la~~q~~~a~s~sr~ls-------~l~a----~~~~~ 626 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGVQQTLD--EG----KLLRLKAGLHLALSQPTDAISTSRYLS-------SLVA----SQLKS 626 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhh--hh----hhhhhhcccccCcccccccchhhHHHH-------HHHH----hhhhh
Confidence 666533 333342222221110 00 001111111122222222221111110 0000 00000
Q ss_pred hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH
Q 003047 278 DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS 357 (854)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~ 357 (854)
+.... .+.-... . ......-.....+++..+-+++..++.++|.-++..+-.++ |-.+
T Consensus 627 ~~se~---~Lp~s~~---~--------------~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~ 684 (799)
T KOG4162|consen 627 AGSEL---KLPSSTV---L--------------PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSA 684 (799)
T ss_pred ccccc---ccCcccc---c--------------CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhH
Confidence 11000 0000000 0 00111222335788899999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhchhcccCCccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV--FLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~--~f~kAL~~~~~l~~~~~l~~~ 435 (854)
..+++.|..+..+|+..+|.+.|.-++. .+|+. ......+|.+|...|+...|.. .+..|+++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~------------- 749 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRL------------- 749 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-------------
Confidence 9999999999999999999999999999 89964 5678889999999999999999 99999998
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+++||.+|.++...|+.++|.+||+-++++.+.+|..
T Consensus 750 ---dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 750 ---DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred ---CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 34578999999999999999999999999999999988753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-10 Score=124.18 Aligned_cols=309 Identities=12% Similarity=-0.005 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
-+..++.+|...++.+.+.+.+.++.... |.+ .+..+..|.++...|++++|++++++++. ..|. ...++..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~-~~~a~~~- 82 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL--AARATERERAHVEALSAWIAGDLPKALALLEQLLD-DYPR-DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHH-
Confidence 34456788888999999999999988888 755 55678899999999999999999999999 6885 4556654
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+..+..+|++..+...+.+++.... .. .+.....+..+|.++...|++++|+..|++++.+.|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~---------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA---PE---------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC---cC---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 6677777766666666666665310 00 23345677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 003047 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQC 559 (854)
Q Consensus 480 w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~ 559 (854)
+..+|.++.. .+ .+++|+.+
T Consensus 151 ~~~la~i~~~---~g---------------------------------------------------------~~~eA~~~ 170 (355)
T cd05804 151 VHAVAHVLEM---QG---------------------------------------------------------RFKEGIAF 170 (355)
T ss_pred HHHHHHHHHH---cC---------------------------------------------------------CHHHHHHH
Confidence 9999998882 20 24779999
Q ss_pred HHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhh
Q 003047 560 LLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNS 639 (854)
Q Consensus 560 l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~ 639 (854)
|++++.+.|.....
T Consensus 171 l~~~l~~~~~~~~~------------------------------------------------------------------ 184 (355)
T cd05804 171 MESWRDTWDCSSML------------------------------------------------------------------ 184 (355)
T ss_pred HHhhhhccCCCcch------------------------------------------------------------------
Confidence 99999888762210
Q ss_pred ccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHH---H-HHHHHHHHHHhcCCHHHHHH
Q 003047 640 LSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIF---L-GHIYAAEALCLLNRPKEAAE 715 (854)
Q Consensus 640 i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~---l-a~lY~aeAl~~lgr~~eAl~ 715 (854)
....+..+|.+++.+|++++|+.++++++...+.+..... . ..++. +...|....+..
T Consensus 185 ---------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~g~~~~~~~ 246 (355)
T cd05804 185 ---------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR---LELAGHVDVGDR 246 (355)
T ss_pred ---------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH---HHhcCCCChHHH
Confidence 0023457788999999999999999998753221111111 1 11111 112222111111
Q ss_pred HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHH
Q 003047 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFE 795 (854)
Q Consensus 716 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e 795 (854)
. +... ... . . . .| + +. ........+.++..+|+.+
T Consensus 247 w-~~~~--------------------~~~--~-~----------~---~~--~-~~-----~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 247 W-EDLA--------------------DYA--A-W----------H---FP--D-HG-----LAFNDLHAALALAGAGDKD 281 (355)
T ss_pred H-HHHH--------------------HHH--H-h----------h---cC--c-cc-----chHHHHHHHHHHhcCCCHH
Confidence 1 0000 000 0 0 0 00 0 00 1122235888999999999
Q ss_pred HHHHHHHHHHhhC-C---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 796 RAHHFVTQALSIL-P---R-----STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 796 ~A~~~~~~Al~~~-P---~-----~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+|...+..+.... . . ...+..+.++++.++|+.++|++.|..
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998865432 1 1 256778888999999999999999986
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-10 Score=120.01 Aligned_cols=290 Identities=16% Similarity=0.093 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
+=+..|+.+.-..+-|+|+++|.+.++.+|...++..-||..+...+. ..++++ |+..+ .+.|+
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE------vDRAIR-iHQ~L-------~~spd-- 100 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE------VDRAIR-IHQTL-------LESPD-- 100 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch------HHHHHH-HHHHH-------hcCCC--
Confidence 446789999999999999999999999999999999999966543332 122222 33333 12222
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
........+++.+|.=|...|=|+.|..+|..+... . .++..+.
T Consensus 101 -------------------------------lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~-efa~~Al 144 (389)
T COG2956 101 -------------------------------LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----G-EFAEGAL 144 (389)
T ss_pred -------------------------------CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----h-hhhHHHH
Confidence 012234567888999999999999999999888762 2 2344567
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS 268 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (854)
--|+++|....+..|||++-..|.+. . ++. .
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~---~----~q~------------------------------~------------ 175 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKL---G----GQT------------------------------Y------------ 175 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc---C----Ccc------------------------------c------------
Confidence 77899999999999999765444433 2 110 0
Q ss_pred hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003047 269 RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAM 348 (854)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al 348 (854)
.++| .. .-..-++.++...++++|..-+++++
T Consensus 176 -----------------~~eI----------------Aq---------------fyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 176 -----------------RVEI----------------AQ---------------FYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred -----------------hhHH----------------HH---------------HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 0111 00 11223566777889999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 349 NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 349 ~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
..+ |+...+-+.+|.+++..|+|++|++.|+.++. .+|...+.+...|-.+|.++|+.++.+.++.++.+..+
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~---- 280 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT---- 280 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 999 99999999999999999999999999999999 78888889999999999999999999999999999732
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
...+..-++..-....-.+.|-.++.+-+...|. ....++|....+
T Consensus 281 -------------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l 326 (389)
T COG2956 281 -------------GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHL 326 (389)
T ss_pred -------------CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhh
Confidence 1233334566666667788899998888998887 344566665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-10 Score=132.86 Aligned_cols=319 Identities=13% Similarity=0.033 Sum_probs=216.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
..+.|.-|.+.+++-.|+.-||.+|..+|.|.+.|--+|-+|...++++.+.+ -+.++.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK------vF~kAs--------------- 623 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK------VFTKAS--------------- 623 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH------hhhhhH---------------
Confidence 44588889999999999999999999999999999999999888887766444 222333
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh--HHH-
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT--ALQ- 186 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~--~~~- 186 (854)
.+ +|+.....|..|++..-.|.|.+|++.|+.+++.. ..+... ...
T Consensus 624 -----------------------------~L-rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 624 -----------------------------LL-RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAE 672 (1238)
T ss_pred -----------------------------hc-CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHH
Confidence 12 67788899999999999999999999999988843 222221 111
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc-CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN-QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASEN 265 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (854)
++..++..+..+|-+.+|. +++|+++...... .-+- |+. ...|--
T Consensus 673 ~~ir~akd~~~~gf~~kav---d~~eksie~f~~~l~h~~-----~~~-----------------------~~~Wi~--- 718 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAV---DFFEKSIESFIVSLIHSL-----QSD-----------------------RLQWIV--- 718 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHhh-----hhh-----------------------HHHHHH---
Confidence 2333556667778888887 6778776554221 0000 000 000110
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH---HHHHHhcC-HHHHH
Q 003047 266 ALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV---RFLLLTRN-LKHAK 341 (854)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~---~lyl~~~~-~~~A~ 341 (854)
.|+.-..|... +++ ...-...+.+.++ ..++...+ +--+.
T Consensus 719 -----asdac~~f~q~------e~~-------------------------~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 719 -----ASDACYIFSQE------EPS-------------------------IVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred -----HhHHHHHHHHh------ccc-------------------------chHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 11222222222 000 0000000111110 01110001 01244
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHH--------hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYA--------RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~--------~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
+++-..+.+. .++..|+++|.-|+. +.+...|+.++.++++ .+. ++...||.||.+ ...|.+.-|.
T Consensus 763 ~c~~~hlsl~---~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~-L~a-nn~~~WnaLGVl-sg~gnva~aQ 836 (1238)
T KOG1127|consen 763 ECGIAHLSLA---IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS-LCA-NNEGLWNALGVL-SGIGNVACAQ 836 (1238)
T ss_pred HHhhHHHHHh---hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-Hhh-ccHHHHHHHHHh-hccchhhhhh
Confidence 5554445543 336788888888776 3445689999999999 676 467899999999 5669999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+|-+++.. .+.....|+|+|..++...+++-|-..|.++..++|.+...|...+.|.+..++
T Consensus 837 HCfIks~~s----------------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 837 HCFIKSRFS----------------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred hhhhhhhhc----------------cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 999999998 355678999999999999999999999999999999999999999998885443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-09 Score=116.33 Aligned_cols=217 Identities=11% Similarity=-0.041 Sum_probs=157.7
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
||+.+..+..+|.++...+++++|.+.+.++.+..+..-+ .....+..+.++...|++++|+ ..+++++...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g~~~~A~---~~~~~~l~~~--- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAGDLPKAL---ALLEQLLDDY--- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHC---
Confidence 6888999999999999999999999999998886554322 2223555678899999999997 5667776543
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. .. .+
T Consensus 74 -P~~------------------------------~~-----------------------a~------------------- 80 (355)
T cd05804 74 -PRD------------------------------LL-----------------------AL------------------- 80 (355)
T ss_pred -CCc------------------------------HH-----------------------HH-------------------
Confidence 110 00 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+. +.++ .......+..+.+.+.+......+ |+...++..+|.++...|++++|++.++
T Consensus 81 -~~-~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 81 -KL-HLGA------------------FGLGDFSGMRDHVARVLPLWAPEN--PDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred -HH-hHHH------------------HHhcccccCchhHHHHHhccCcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 0000 000111233344444444444455 8888899999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. ..|. .+.++..+|.+|...|++++|+.+|++++...+. . .......+.++|.++...|++++
T Consensus 139 ~al~-~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~--------~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 139 RALE-LNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----S--------SMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHh-hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----C--------cchhHHHHHHHHHHHHHCCCHHH
Confidence 9999 6785 4678888999999999999999999999997321 0 01123456789999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
|+.+|++++...|.
T Consensus 205 A~~~~~~~~~~~~~ 218 (355)
T cd05804 205 ALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHhccccC
Confidence 99999999877763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=127.06 Aligned_cols=330 Identities=15% Similarity=0.105 Sum_probs=227.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++-.|+..+++.+|+.+++.++..+ |++...|.-+|.+|...|+|.-|++.|.++.. .+|. ....-+-.+.+.+.+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~-s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-LRPL-SKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcH-hHHHHHHHHHHHHHh
Confidence 6667888999999999999999999 99999999999999999999999999999998 7884 455566689999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--------CCCHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--------YKQPL 478 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--------P~~~~ 478 (854)
|+|.+|+..+.+.+......... ...-.+.+...+..+...|=+..|.+.++++++.+ -++..
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~---------q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTG---------QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999873221100 11234556666666666666666666666655543 45667
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcccc-eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCC-ChHHH
Q 003047 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVK-VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKL-SMPLA 556 (854)
Q Consensus 479 aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~-~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~-sl~~A 556 (854)
.|.-++..|.....- +. + ++ ..+++ ++..+ ..+ . ...+.. -+..|
T Consensus 715 ~Wi~asdac~~f~q~---e~-------~-~vn~h~l~-------il~~q-~e~-~-------------~~l~~~d~l~Lg 761 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQE---EP-------S-IVNMHYLI-------ILSKQ-LEK-T-------------GALKKNDLLFLG 761 (1238)
T ss_pred HHHHHhHHHHHHHHh---cc-------c-chHHHHHH-------HHHHH-HHh-c-------------ccCcchhHHHHH
Confidence 799999988854442 11 1 11 11111 01100 000 0 001100 24567
Q ss_pred HHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHH
Q 003047 557 RQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVI 636 (854)
Q Consensus 557 ~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~ 636 (854)
..|+-..|.+-...-+ |.|+++
T Consensus 762 ~~c~~~hlsl~~~~~~----------------------------WyNLGi------------------------------ 783 (1238)
T KOG1127|consen 762 YECGIAHLSLAIHMYP----------------------------WYNLGI------------------------------ 783 (1238)
T ss_pred HHHhhHHHHHhhccch----------------------------HHHHhH------------------------------
Confidence 7888777776655211 222220
Q ss_pred hhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHH
Q 003047 637 QNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPV-KALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAA 714 (854)
Q Consensus 637 ~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~-~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl 714 (854)
..++. .+.+-+.++-. .|+.++++++. ...+...+..||.+ -+.|.+.=|.
T Consensus 784 ---------------nylr~------f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl------sg~gnva~aQ 836 (1238)
T KOG1127|consen 784 ---------------NYLRY------FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL------SGIGNVACAQ 836 (1238)
T ss_pred ---------------HHHHH------HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh------hccchhhhhh
Confidence 01111 11222333333 79999999987 55566777778764 3557787777
Q ss_pred HHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCH
Q 003047 715 EHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEF 794 (854)
Q Consensus 715 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~ 794 (854)
.|+-+.+ .. +|. ....|.|+|.+.....|+
T Consensus 837 HCfIks~--~s--------------------------------------ep~----------~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 837 HCFIKSR--FS--------------------------------------EPT----------CHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred hhhhhhh--hc--------------------------------------ccc----------chhheeccceeEEecccH
Confidence 7777666 11 122 467789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 795 ERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 795 e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
+.|...+.++.+++|.+...++..+++.-..|+.-++..++..
T Consensus 867 E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999999999988899999999999998888887765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-11 Score=113.14 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
+.+++++..+ |++..+++.+|..++..|++++|+..+++++. .+|. ++.++.++|.+|..+|++++|+.+|++++.
T Consensus 4 ~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999 99999999999999999999999999999999 6884 678999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
. .+.....++++|.++...|++++|+..|+++++++|++...+...
T Consensus 80 ~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 80 L----------------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred c----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 8 345678999999999999999999999999999999998865433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-07 Score=103.86 Aligned_cols=296 Identities=17% Similarity=0.093 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+++.-++.+-..|+...|..-+..+.+.+ |++.+.++..-.+.+...+++.|-.+|.++.. ..| .+.+|+.-..+
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~-~sg--TeRv~mKs~~~ 660 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS-ISG--TERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCC--cchhhHHHhHH
Confidence 44445777778899999999999999999 99999999999999999999999999999988 555 25678777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
..-+++.++|+..++++|+.+ |..+..|..+|-++.++++.+.|.+.|..-+...|+.+.+|.-
T Consensus 661 er~ld~~eeA~rllEe~lk~f----------------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSF----------------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhC----------------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 889999999999999999984 3456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
|+..-- +. | .+-.|+..|..
T Consensus 725 LakleE---k~--------------------------------------------~-------------~~~rAR~ildr 744 (913)
T KOG0495|consen 725 LAKLEE---KD--------------------------------------------G-------------QLVRARSILDR 744 (913)
T ss_pred HHHHHH---Hh--------------------------------------------c-------------chhhHHHHHHH
Confidence 986422 10 0 12449999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
|..-+|....-
T Consensus 745 arlkNPk~~~l--------------------------------------------------------------------- 755 (913)
T KOG0495|consen 745 ARLKNPKNALL--------------------------------------------------------------------- 755 (913)
T ss_pred HHhcCCCcchh---------------------------------------------------------------------
Confidence 99988886521
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+...-.+-+..|+...|....-++|. .|... .+ . +|+-.+-.++.. ..-.
T Consensus 756 ----------------wle~Ir~ElR~gn~~~a~~lmakALQecp~sg-~L------W-aEaI~le~~~~r-kTks---- 806 (913)
T KOG0495|consen 756 ----------------WLESIRMELRAGNKEQAELLMAKALQECPSSG-LL------W-AEAIWLEPRPQR-KTKS---- 806 (913)
T ss_pred ----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-hh------H-HHHHHhccCccc-chHH----
Confidence 11112246788999999999999887 55432 22 1 233333333322 0000
Q ss_pred cCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 722 SGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFV 801 (854)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~ 801 (854)
.++|..- .. ++.++.-.|..+-...++++|.+.|
T Consensus 807 ---------------~DALkkc--------------------------e~-----dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 807 ---------------IDALKKC--------------------------EH-----DPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred ---------------HHHHHhc--------------------------cC-----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111110 00 3455667899999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 802 TQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 802 ~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
.+|+.++|+++.++-..--.+++.|.-++-..++.+ ...-|.
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999988777777778899999999999988 443343
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-10 Score=118.92 Aligned_cols=207 Identities=13% Similarity=-0.017 Sum_probs=146.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
++..+..++++|..++..|+|++|+..|++++...+.- .....+.+.++.+|...|++++|+. .+++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~~~~A~~---~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGDYAEAIA---AADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHC---
Confidence 45577899999999999999999999999999955432 2233468889999999999999985 567666543
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. +. .. .+
T Consensus 101 -p~~--------------------~~--------~~------------------------------------------~a 109 (235)
T TIGR03302 101 -PNH--------------------PD--------AD------------------------------------------YA 109 (235)
T ss_pred -cCC--------------------Cc--------hH------------------------------------------HH
Confidence 110 00 00 02
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+..+|.+|... -..++...++.++|++.+++++..+ |++..+.-.+..+....+
T Consensus 110 ~~~~g~~~~~~--------------~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~---------- 163 (235)
T TIGR03302 110 YYLRGLSNYNQ--------------IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRN---------- 163 (235)
T ss_pred HHHHHHHHHHh--------------cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH----------
Confidence 22334444221 0112333478899999999999999 999777543332211110
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
.+ ......+|.+|..+|++.+|+..|++++...++ .+....+++++|.++..+|++++
T Consensus 164 -~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 164 -RL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPD-------------TPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred -HH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-------------CcchHHHHHHHHHHHHHcCCHHH
Confidence 01 122346899999999999999999999997331 12346899999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
|..+++....-+|+
T Consensus 222 A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 222 AQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999888777664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=120.75 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=114.2
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH-HHHcCC--HH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI-YYQLAK--YH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i-y~~~g~--~~ 410 (854)
.++.++++..+++++..+ |++..+|+.+|.+|...|++++|+.+|++++. .+|+ ++.++.++|.+ |...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~-l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ-LRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 456678899999999999 99999999999999999999999999999999 7884 68899999987 578888 59
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+|+..|+++++. .+.+..+++++|.+++..|++++|+.+|++++++.|.+..-
T Consensus 128 ~A~~~l~~al~~----------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALAL----------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHh----------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999998 34567899999999999999999999999999999887644
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-10 Score=112.66 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.+.+.+|.-|++.|++..|.+-++++|+ .||+ ...+|..++.+|.+.|+.+.|-+.|++||.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~-~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------------- 98 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE-HDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--------------- 98 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------
Confidence 4668889999999999999999999999 7995 6889999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hcCCCHHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL--VFYKQPLLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~--l~P~~~~aw~~La~~~i 488 (854)
.|.+.++++|.|-.+..+|+|++|...|++|+. .+|..+..|.++|.|..
T Consensus 99 -~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 99 -APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred -CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 455678999999999999999999999999996 46777889999999988
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-08 Score=110.76 Aligned_cols=401 Identities=14% Similarity=0.073 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
+....-...+..|...++-+.|+..+.+.-.... .|++..-++ ..+..++..-..-+..-+.++...-
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r-~p~inlMla--~l~~~g~r~~~~vl~ykevvrecp~--------- 162 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR-SPRINLMLA--RLQHHGSRHKEAVLAYKEVIRECPM--------- 162 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc-chhHHHHHH--HHHhccccccHHHHhhhHHHHhcch---------
Confidence 3455666778888899999999988776543222 344444344 4444443321111111111111110
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHH---HHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLN---IAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n---~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
|...-+++..-+++|....+..+..+ .. ++-..|.|.- .|.+....+-|.-+..++-.....++...+
T Consensus 163 -------aL~~i~~ll~l~v~g~e~~S~~m~~~-~~-~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh 233 (564)
T KOG1174|consen 163 -------ALQVIEALLELGVNGNEINSLVMHAA-TV-PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH 233 (564)
T ss_pred -------HHHHHHHHHHHhhcchhhhhhhhhhe-ec-CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH
Confidence 00000011111222222222222111 11 1222333333 366666666666666666666665555444
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
.+..++.+|...|++++|+ ..||+...+. ++.
T Consensus 234 -----Ll~~lak~~~~~Gdn~~a~---~~Fe~~~~~d----py~------------------------------------ 265 (564)
T KOG1174|consen 234 -----LMMALGKCLYYNGDYFQAE---DIFSSTLCAN----PDN------------------------------------ 265 (564)
T ss_pred -----HHHHHhhhhhhhcCchHHH---HHHHHHhhCC----hhh------------------------------------
Confidence 2445789999999999998 6889887653 210
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHH
Q 003047 262 ASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAK 341 (854)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~ 341 (854)
+ . .+++ | +-++-+.|+++.-.
T Consensus 266 -------------------i--------~------------------------~MD~-------Y-a~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 266 -------------------V--------E------------------------AMDL-------Y-AVLLGQEGGCEQDS 286 (564)
T ss_pred -------------------h--------h------------------------hHHH-------H-HHHHHhccCHhhHH
Confidence 0 0 0111 1 22334456666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
.-...+..+. .....-||.-+.+.+...+|+.|+.+-++++. .+|. +..++...|..+.++|++++|+-.|+.|..
T Consensus 287 ~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 6666677776 56667788889999999999999999999999 7885 456787789999999999999999999988
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhccccCCCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA-ECCLMALEKGLVAPGR 500 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La-~~~i~~~~~~~~e~~~ 500 (854)
+ .|-+.+.|--|-.+|+..|++.||.-.-+.++...|+++....-+| .+|.
T Consensus 363 L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~------------ 414 (564)
T KOG1174|consen 363 L----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF------------ 414 (564)
T ss_pred c----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec------------
Confidence 7 3446678888888999999999999999999999999888776665 2222
Q ss_pred CCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCC
Q 003047 501 SLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLP 580 (854)
Q Consensus 501 ~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~ 580 (854)
.+ |. .-|.|-+.++.+|.+.|.+..+
T Consensus 415 --------------------------------~d-p~--------------~rEKAKkf~ek~L~~~P~Y~~A------- 440 (564)
T KOG1174|consen 415 --------------------------------PD-PR--------------MREKAKKFAEKSLKINPIYTPA------- 440 (564)
T ss_pred --------------------------------cC-ch--------------hHHHHHHHHHhhhccCCccHHH-------
Confidence 00 00 1377999999999999997642
Q ss_pred CCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHH
Q 003047 581 SNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLA 660 (854)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~ 660 (854)
-.
T Consensus 441 ------------------------------------------------------------------------------V~ 442 (564)
T KOG1174|consen 441 ------------------------------------------------------------------------------VN 442 (564)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 661 NLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
.+|-.++.-|.+..++...++.|...++...|..||.+..| .+.+.+|+++|..+++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A-----~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA-----QNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHH-----hhhHHHHHHHHHHHHh
Confidence 33556777788888888888888755555688888876654 5888888888888884
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=118.13 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=160.7
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eA 412 (854)
..++.+|...++.++... +++++|+..+.+++. .+|. +..+|+..|.++..+| +++++
T Consensus 33 ~~~~~~a~~~~ra~l~~~-------------------e~serAL~lt~~aI~-lnP~-~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 33 TPEFREAMDYFRAVYASD-------------------ERSPRALDLTADVIR-LNPG-NYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred CHHHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHH-HCch-hHHHHHHHHHHHHHcchhHHHH
Confidence 356666666666666655 899999999999999 7994 6789999999999999 68999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP--VLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~--eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+.++.+++.. .+....+|++.|.++...|++ +++++++.++++++|++..+|..++.++...
T Consensus 92 L~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 92 LDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999998 456788999999999999984 7889999999999999999999999876621
Q ss_pred HhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 003047 491 LEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYP 570 (854)
Q Consensus 491 ~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~ 570 (854)
+ .++.|..++.++|.++|..
T Consensus 156 ~------------------------------------------------------------~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 156 G------------------------------------------------------------GWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred h------------------------------------------------------------hHHHHHHHHHHHHHHCCCc
Confidence 0 1467999999999999885
Q ss_pred cccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHh
Q 003047 571 DLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRE 650 (854)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 650 (854)
..+
T Consensus 176 ~sA----------------------------------------------------------------------------- 178 (320)
T PLN02789 176 NSA----------------------------------------------------------------------------- 178 (320)
T ss_pred hhH-----------------------------------------------------------------------------
Confidence 432
Q ss_pred hHHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 651 NQMIKQALLANLAYVELEM---ENP----VKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 651 ~~~l~~~~l~~la~v~l~l---g~~----~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
+...+++...+ |.+ ..++.+.+++|. .|.+.+++.+++.++... -..+++..+|++.+...+
T Consensus 179 --------W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~-~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 179 --------WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD-KEALVSDPEVSSVCLEVL 248 (320)
T ss_pred --------HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC-CcccccchhHHHHHHHhh
Confidence 33344444443 323 478889988886 899999999998876530 011466677888877766
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=128.34 Aligned_cols=285 Identities=13% Similarity=0.035 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.|.-+--.|.-+++.|++.+-+.+|+.+++ +-.-|=..-.+|+.-|++.|+.+++|.||++ |..-=+.+.+....+
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~---yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALK---YHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHh---hhhhhHHHHHHhcch
Confidence 355555668889999999999999999999 3333333466788889999999999999985 333222222222111
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh--hhhhhhhhhhhhhhhhhhhccccCCCCCCCC--C
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS--RTLSEETLEDDTVLALSSLEISGQNLTRPVG--L 300 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 300 (854)
..+|.+| .|++|.|. ++..|+.+--... +++..+ ++++|+ .
T Consensus 92 ---------------------lGEAKss--------gNLGNtlKv~G~fdeA~~cc~rh-----Ld~are-LgDrv~e~R 136 (639)
T KOG1130|consen 92 ---------------------LGEAKSS--------GNLGNTLKVKGAFDEALTCCFRH-----LDFARE-LGDRVLESR 136 (639)
T ss_pred ---------------------hcccccc--------ccccchhhhhcccchHHHHHHHH-----hHHHHH-HhHHHhhhH
Confidence 1122211 23455555 4455444333333 233222 234454 8
Q ss_pred ccchhhhhhhhcccchhH----------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003047 301 SSNELSRTLVDRSISTVD----------------LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKS 364 (854)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~----------------~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla 364 (854)
++.|||.||+.++-.++. +..+..+|.-.+-+. +.+...+... .++-.+|
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~--------~~lgDr~aqG------Ra~GnLG 202 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS--------EKLGDRLAQG------RAYGNLG 202 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHhhc------chhcccC
Confidence 999999999987543321 122222221111111 1111112222 5677899
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 365 QLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
+.|+-.|+|+.||..-+.-+.+ .+......++.|||.+|.-+|+++.|+++|++++.+..++.+..
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------- 272 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------- 272 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh----------
Confidence 9999999999999998876653 22222356889999999999999999999999999866654221
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHh
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK------QPLLWLRLAECCLMALE 492 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~------~~~aw~~La~~~i~~~~ 492 (854)
-.+..-|.||+.|.....++.|+.++++=|.|... ..++++.||+.+..++.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 13567789999999999999999999998887643 34567777776664433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-06 Score=99.61 Aligned_cols=231 Identities=14% Similarity=0.085 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG-KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~-P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
-++..+..+-..|..--+..-++.++.+.+- .+.-..|+.-++.....+-++=|..+|..+|. ..|. ...+|.....
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq-vfp~-k~slWlra~~ 558 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ-VFPC-KKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-hccc-hhHHHHHHHH
Confidence 4445556666667777777788888887721 23345678889999999999999999999999 7885 4567876677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.-..-|..+.-...|++|+... +...-.|...+.-+...|+...|...+.++++..|++.++|+
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~----------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQC----------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhC----------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 7778899999999999999983 444566777788889999999999999999999999999998
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.--.... .. ..++.|+..|.
T Consensus 623 aavKle~---en---------------------------------------------------------~e~eraR~lla 642 (913)
T KOG0495|consen 623 AAVKLEF---EN---------------------------------------------------------DELERARDLLA 642 (913)
T ss_pred HHHHHhh---cc---------------------------------------------------------ccHHHHHHHHH
Confidence 6553322 10 02477888887
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+|-...|. +-
T Consensus 643 kar~~sgT-eR--------------------------------------------------------------------- 652 (913)
T KOG0495|consen 643 KARSISGT-ER--------------------------------------------------------------------- 652 (913)
T ss_pred HHhccCCc-ch---------------------------------------------------------------------
Confidence 77664444 10
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
+++..+.+.-.+++..+|+..+++.|. .|++...|..+|.+|. .+++++.|.+.|...
T Consensus 653 ----------------v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-----~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 653 ----------------VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-----QMENIEMAREAYLQG 711 (913)
T ss_pred ----------------hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-----HHHHHHHHHHHHHhc
Confidence 122334456678888888888888886 7888888877777665 578888888888877
Q ss_pred hc
Q 003047 721 LS 722 (854)
Q Consensus 721 l~ 722 (854)
++
T Consensus 712 ~k 713 (913)
T KOG0495|consen 712 TK 713 (913)
T ss_pred cc
Confidence 74
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-07 Score=107.78 Aligned_cols=254 Identities=17% Similarity=0.113 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
.++-..||.+++..|+.++|...++..+++|...|.+++.+--.|+.-.- -.+-.++...++..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~------lg~~~ea~~~vr~glr-------- 69 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC------LGKKEEAYELVRLGLR-------- 69 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhc------ccchHHHHHHHHHHhc--------
Confidence 35567899999999999999999999999999999999999888877442 2334558888887772
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
+|+...+-|.-+|.++..-++|++||++|..++++ ++.+..
T Consensus 70 -------------------------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN~q- 110 (700)
T KOG1156|consen 70 -------------------------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDNLQ- 110 (700)
T ss_pred -------------------------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcHH-
Confidence 14556678999999999999999999999999994 443332
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
++--|.-+-.+.++|+-..++ ++ +.+... + -..++|.
T Consensus 111 ---ilrDlslLQ~QmRd~~~~~~t--r~-~LLql~----~-------------------------------~~ra~w~-- 147 (700)
T KOG1156|consen 111 ---ILRDLSLLQIQMRDYEGYLET--RN-QLLQLR----P-------------------------------SQRASWI-- 147 (700)
T ss_pred ---HHHHHHHHHHHHHhhhhHHHH--HH-HHHHhh----h-------------------------------hhHHHHH--
Confidence 455566666777777766542 11 122121 0 0011122
Q ss_pred hhhhhhh------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH-HHHHHHHHHHHHhcC
Q 003047 264 ENALSRT------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL-KLQLYKVRFLLLTRN 336 (854)
Q Consensus 264 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~l~l~K~~lyl~~~~ 336 (854)
+-+++.- +.-++++..... + +.+++..++.+ ...+|+.++.+..|.
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t---------~------------------~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKT---------Q------------------NTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------h------------------ccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 1122200 111111111111 0 01122333333 467889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+++|.+.+..--..- -+.....-..|.+++..+++++|+.+|...+. ..|+ +..+|..+=.++.
T Consensus 201 ~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~-rnPd-n~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE-RNPD-NLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh-hCch-hHHHHHHHHHHHH
Confidence 998887765544443 45556677899999999999999999999999 6885 4555655544544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=118.32 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~n 397 (854)
..+.++..|+..|++++|+..+++++..+ |+++ .+++.+|.+++..|++++|+..|+++++ ..|+. .+.+++
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~ 111 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCchHHHHH
Confidence 55667889999999999999999999999 9886 5789999999999999999999999999 56642 234688
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhchhcccCC-ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 398 NLGCIYYQL--------AKYHTSSVFLSKALSNSASLRKDK-PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 398 nLG~iy~~~--------g~~~eAi~~f~kAL~~~~~l~~~~-~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.+|.+|... |++++|+..|++++...+.-.... .+..............+.+|..|+..|++.+|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 899999987 889999999999999743210000 00000000000112335789999999999999999999
Q ss_pred HHHhcCCC---HHHHHHHHHHHHH
Q 003047 469 SSLVFYKQ---PLLWLRLAECCLM 489 (854)
Q Consensus 469 AL~l~P~~---~~aw~~La~~~i~ 489 (854)
++..+|+. +.+|+.+|.++..
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHH
Confidence 99998875 5799999999995
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-06 Score=99.71 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=158.3
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhh
Q 003047 21 SGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARA 100 (854)
Q Consensus 21 ~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (854)
+|-......|+..=-++-..|+|++|++...++|.+.|+++.+.|-..++-+ +..+|.++|.-+++-..
T Consensus 6 ~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI------q~~ky~~ALk~ikk~~~----- 74 (652)
T KOG2376|consen 6 SGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI------QLDKYEDALKLIKKNGA----- 74 (652)
T ss_pred cCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh------hhhHHHHHHHHHHhcch-----
Confidence 3444455789999999999999999999999999999999999998877754 56788888844443220
Q ss_pred hcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCc
Q 003047 101 TGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPID 180 (854)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~ 180 (854)
. +. .....+-.|-+.|++++.++|++.++ ..++.+
T Consensus 75 -----~-----------------------------------~~-~~~~~fEKAYc~Yrlnk~Dealk~~~----~~~~~~ 109 (652)
T KOG2376|consen 75 -----L-----------------------------------LV-INSFFFEKAYCEYRLNKLDEALKTLK----GLDRLD 109 (652)
T ss_pred -----h-----------------------------------hh-cchhhHHHHHHHHHcccHHHHHHHHh----cccccc
Confidence 0 01 11122577889999999999999996 344455
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhh
Q 003047 181 ETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATV 260 (854)
Q Consensus 181 e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (854)
+. ...+-+++...+++|++|++||.++-+--. ++. | .+...+.
T Consensus 110 ~~----ll~L~AQvlYrl~~ydealdiY~~L~kn~~------dd~------------------------d---~~~r~nl 152 (652)
T KOG2376|consen 110 DK----LLELRAQVLYRLERYDEALDIYQHLAKNNS------DDQ------------------------D---EERRANL 152 (652)
T ss_pred hH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------chH------------------------H---HHHHHHH
Confidence 43 456677999999999999988766632210 110 0 0111000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 261 NASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
.++...+. .. .. ...+...+....+-+..+-+++..|++.+|
T Consensus 153 ----~a~~a~l~-----~~-~~----------------------------q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 153 ----LAVAAALQ-----VQ-LL----------------------------QSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred ----HHHHHhhh-----HH-HH----------------------------HhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 11110000 00 00 000001122334566678889999999999
Q ss_pred HHHHHHHHHhcC-----CCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHH
Q 003047 341 KREVKLAMNIAR-----GKDS--------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNL 399 (854)
Q Consensus 341 ~~elk~al~~~~-----~P~~--------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnL 399 (854)
++-+.+++.+.+ +-.+ ....+.++.++..+|+.++|.++|..+++. +|. ..+.+-|||
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR-NPADEPSLAVAVNNL 268 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCCchHHHHHhcch
Confidence 999999955442 0111 134577888888999999999999888883 222 234455555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-07 Score=112.92 Aligned_cols=313 Identities=14% Similarity=0.030 Sum_probs=214.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc----c
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKD---------SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI----S 392 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~----~ 392 (854)
.++.++...+++++|.+.+..+.... +. .......+|.++...|++++|..++++++.. .+.. .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQEL--KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE-LPLTWYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhc--cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccHHHH
Confidence 45566678899999998888887654 21 1234566889999999999999999999872 2221 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
..+++.+|.++...|++++|..+|++++...+.... ......++.++|.+++..|++++|..++++++.+
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346678999999999999999999999987443211 0112346678999999999999999999999987
Q ss_pred cCCC--------HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 473 FYKQ--------PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 473 ~P~~--------~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
.... ..++..+|.++. ..
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~---~~--------------------------------------------------- 586 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLW---EW--------------------------------------------------- 586 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHH---Hh---------------------------------------------------
Confidence 4331 111223333322 10
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
..++.|..++++++.+.......
T Consensus 587 ------G~~~~A~~~~~~al~~~~~~~~~--------------------------------------------------- 609 (903)
T PRK04841 587 ------ARLDEAEQCARKGLEVLSNYQPQ--------------------------------------------------- 609 (903)
T ss_pred ------cCHHHHHHHHHHhHHhhhccCch---------------------------------------------------
Confidence 12477999999998876542110
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CC--ChHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PD--CSRIYIFLGHIYAA 701 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~--~~~~~~~la~lY~a 701 (854)
.....+..++.++...|++..|...+.+++.. .. ..............
T Consensus 610 -----------------------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 610 -----------------------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 00023456788999999999999999998652 11 11111111111112
Q ss_pred HHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 003047 702 EALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLY 781 (854)
Q Consensus 702 eAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~ 781 (854)
..+...|+.++|...+..... .... .+ ......+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~--~~~~-----------------------------------~~---------~~~~~~~ 694 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPK--PEFA-----------------------------------NN---------HFLQGQW 694 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCC--CCCc-----------------------------------cc---------hhHHHHH
Confidence 344568999999999877662 1000 00 0023345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPR------STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~------~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++|.++..+|++++|...+++++..... ...++.+++..+.+.|+.++|...+++
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78999999999999999999999886322 245778888889999999999999887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-10 Score=109.12 Aligned_cols=111 Identities=6% Similarity=-0.169 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.++.++...|++++|.+.++.++.++ |++..+++.+|.++...|++++|+..|++++. .+|. .+.+++++|.+|..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-LDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CcHHHHHHHHHHHH
Confidence 46888899999999999999999999 99999999999999999999999999999999 7895 67899999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
+|++++|+..|++++.. .|.++..+.++|.+....
T Consensus 105 ~g~~~eAi~~~~~Al~~----------------~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM----------------SYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHH
Confidence 99999999999999998 355677888888876554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=106.80 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+..+..+..|..++..|++++|.++|+-+.. .+| .+...|++||.++..+|+|.+||..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----------- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-YDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----------- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence 45667889999999999999999999999999 799 57889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+.++..++|+|.|++..|+.+.|.++|+.++.+..+.|.
T Consensus 99 -----~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 99 -----KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 3456789999999999999999999999999999955543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=117.41 Aligned_cols=111 Identities=17% Similarity=0.095 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
+=..|+-.+..++|++|+..|.++|. .+| .++.+|.|.+.+|.++|.|+.|++-.++||.+ .
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~-l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----------------D 145 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIE-LDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----------------D 145 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh-cCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------C
Confidence 34568999999999999999999999 799 47889999999999999999999999999999 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|....+|-.||.+|+.+|++++|++.|+++|+++|++...|.+|..+-.
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999999986644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=128.54 Aligned_cols=140 Identities=11% Similarity=-0.042 Sum_probs=121.1
Q ss_pred HHHHHhcCHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 329 RFLLLTRNLK---HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 329 ~lyl~~~~~~---~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
++....+... +++.++.....-. |+++++++++|.+....|++++|+..++.++. ..|+ +..++.+++.++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd-~~~a~~~~a~~L~~ 132 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRY--PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPD-SSEAFILMLRGVKR 132 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCC-cHHHHHHHHHHHHH
Confidence 3444444333 4555556666667 99999999999999999999999999999999 7895 67889999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
++++++|+..++++|.. .|.++..++.+|.++.++|+|++|+++|++++...|+++.+|..+|.
T Consensus 133 ~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 133 QQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred hccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999998 45678899999999999999999999999999999999999999999
Q ss_pred HHH
Q 003047 486 CCL 488 (854)
Q Consensus 486 ~~i 488 (854)
++.
T Consensus 197 ~l~ 199 (694)
T PRK15179 197 SLT 199 (694)
T ss_pred HHH
Confidence 888
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-09 Score=107.46 Aligned_cols=141 Identities=21% Similarity=0.085 Sum_probs=128.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+-..+-.++++-|..+++.+...+ |......-+.|..+-..|++++|+++|+..+. .||. +..++-..-.+...+|
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-ddpt-~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-DDPT-DTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-cCcc-hhHHHHHHHHHHHHcC
Confidence 334566789999999999999999 99999999999999999999999999999999 7885 4566777778889999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+.-+||+.+.+-|..+ ..+.++|..++..|+..|+|+.|.-||++.+-+.|-+|..+.++|+++
T Consensus 135 K~l~aIk~ln~YL~~F----------------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKF----------------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred CcHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999874 245799999999999999999999999999999999999999999998
Q ss_pred H
Q 003047 488 L 488 (854)
Q Consensus 488 i 488 (854)
+
T Consensus 199 Y 199 (289)
T KOG3060|consen 199 Y 199 (289)
T ss_pred H
Confidence 8
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=115.97 Aligned_cols=291 Identities=13% Similarity=-0.019 Sum_probs=211.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.+..++.+.+|+..+..+++.. |++..+|...+..++..|+|++|+-..++.++ .+|. ....+...|.+|..++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r-~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR-LKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee-cCCC-ccccccchhhhhhhhHHH
Confidence 3445678888999999999999 99999999999999999999999999999998 6774 455777789999999999
Q ss_pred HHHHHHHHHHHH--hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 410 HTSSVFLSKALS--NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 410 ~eAi~~f~kAL~--~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+|...|+-.=. ....+...+++.......|.-....+.-+.|+...|++++|...-...+++++.+..+.+-.|.|+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccc
Confidence 999988772110 000011001111111111222345566799999999999999999999999999999887777665
Q ss_pred HHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhc
Q 003047 488 LMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLL 567 (854)
Q Consensus 488 i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~ 567 (854)
.. . ...+-|+.+|++||.+.
T Consensus 214 yy--------------------------------------------~----------------~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 214 YY--------------------------------------------N----------------DNADKAINHFQQALRLD 233 (486)
T ss_pred cc--------------------------------------------c----------------cchHHHHHHHhhhhccC
Confidence 51 0 02366999999999999
Q ss_pred CCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHh
Q 003047 568 NYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVC 647 (854)
Q Consensus 568 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~ 647 (854)
|.+... +++ .|
T Consensus 234 pdh~~s-----------------------k~~------------~~---------------------------------- 244 (486)
T KOG0550|consen 234 PDHQKS-----------------------KSA------------SM---------------------------------- 244 (486)
T ss_pred hhhhhH-----------------------HhH------------hh----------------------------------
Confidence 995431 000 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHhhhcCC
Q 003047 648 RRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIY--AAEALCLLNRPKEAAEHFSMYLSGG 724 (854)
Q Consensus 648 ~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY--~aeAl~~lgr~~eAl~~l~~~l~~~ 724 (854)
++..| -.+-.-|.-....|++..|-++|.++|. +|.+. ..++++| .|.+.+.+||..||+...+.++.
T Consensus 245 --~~k~l--e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~-- 315 (486)
T KOG0550|consen 245 --MPKKL--EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK---KTNAKLYGNRALVNIRLGRLREAISDCNEALK-- 315 (486)
T ss_pred --hHHHH--HHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhh--
Confidence 00011 1122346678899999999999999997 55532 3345555 35567889999999999999983
Q ss_pred CCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 725 DNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQA 804 (854)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~A 804 (854)
+| |. -..++.--|.+|...++|++|.+-|++|
T Consensus 316 iD--------------------------------------~s----------yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 316 ID--------------------------------------SS----------YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred cC--------------------------------------HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22 5677777999999999999999999999
Q ss_pred HhhCCC
Q 003047 805 LSILPR 810 (854)
Q Consensus 805 l~~~P~ 810 (854)
+...-+
T Consensus 348 ~q~~~s 353 (486)
T KOG0550|consen 348 MQLEKD 353 (486)
T ss_pred Hhhccc
Confidence 887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.3e-08 Score=111.07 Aligned_cols=243 Identities=16% Similarity=0.052 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.++|..+.=.+..++|++.++..+.+|+ ..|. .+..+-..|..+..+|+-++|..+.+.++..+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------------- 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILK-KFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------------- 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC--------------
Confidence 5677788888889999999999999999 6774 56677778999999999999999999999872
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.....+|.-+|..+-..++|++|+.||+.|+.+.|+|..+|.-|+...++.... +
T Consensus 72 --~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~---~-------------------- 126 (700)
T KOG1156|consen 72 --LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY---E-------------------- 126 (700)
T ss_pred --cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---h--------------------
Confidence 345678999999999999999999999999999999999999999776632221 0
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
| ....-.+-|.+.|...
T Consensus 127 --------------------~-----------------~~~tr~~LLql~~~~r-------------------------- 143 (700)
T KOG1156|consen 127 --------------------G-----------------YLETRNQLLQLRPSQR-------------------------- 143 (700)
T ss_pred --------------------h-----------------HHHHHHHHHHhhhhhH--------------------------
Confidence 0 1111122233444432
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALA 677 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~ 677 (854)
+.|...|..+..+|++..|+.
T Consensus 144 -----------------------------------------------------------a~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 144 -----------------------------------------------------------ASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 124455777888899999998
Q ss_pred HHHHHHc----CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 678 AARSLLE----LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 678 ~~~~lL~----~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
....... .|+.-..-+....+|....+...|++++|++++...-.++.|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--------------------------- 217 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--------------------------- 217 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------------------------
Confidence 8877664 233334445566788888899999999999999765521111
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
.-...---|..+..++++++|...++..+..+||+..
T Consensus 218 -----------------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 218 -----------------------KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred -----------------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 0111122566778889999999999999999999843
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-09 Score=107.57 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=106.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
.-+|+..|++.......++... |.. -+...++.++++..+++++. .+|+ +...|..||.+|..+|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~---------~~~~~~~~~~~i~~l~~~L~-~~P~-~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH---------QFASQQTPEAQLQALQDKIR-ANPQ-NSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc---------cccCchhHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHCC
Confidence 4478888888765444332221 110 11136788999999999999 7895 6889999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH-HHCCC--cHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY-LACGK--PVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l-l~~Gk--~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
++++|+..|++++.+ .+.+..+++++|.++ ...|+ +++|.++|+++++++|+++.+|+.||
T Consensus 88 ~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 88 DYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 999999999999998 356788999999985 67788 59999999999999999999999999
Q ss_pred HHHH
Q 003047 485 ECCL 488 (854)
Q Consensus 485 ~~~i 488 (854)
.++.
T Consensus 152 ~~~~ 155 (198)
T PRK10370 152 SDAF 155 (198)
T ss_pred HHHH
Confidence 9887
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=125.66 Aligned_cols=142 Identities=9% Similarity=-0.120 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.-+++....|.+++|.+-++.++++. |++..+++.++.++.+.+++++|+..+++++. .+| +++.+++.+|.+
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGS-SSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCC-CCHHHHHHHHHH
Confidence 34445888999999999999999999999 99999999999999999999999999999999 799 478999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+.++|+|++|+.+|++++.. .+..+.++.++|.++...|+.++|..+|+++++...+..+.+.+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~----------------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ----------------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999985 34567899999999999999999999999999999888777555
Q ss_pred HH
Q 003047 483 LA 484 (854)
Q Consensus 483 La 484 (854)
+.
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 43
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-06 Score=98.73 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc-----------------
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRT----------------- 387 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~----------------- 387 (854)
+.|+=|..+.++.++|+++++ ..+ +.+...+.+.|++.+.+|+|++|+++|+.+++-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---ccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 446667788999999999998 566 7777899999999999999999999999986510
Q ss_pred ------------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-cccCCccccccccCCccHHHHHHHHHHHH
Q 003047 388 ------------EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS-LRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 388 ------------dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~-l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
-|...-..++|.+|++...|+|.+|++.+++|+.+.+. +...+.-+ .. ....-..+...++-+|.
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e-Ee-ie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE-EE-IEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch-hh-HHHHHHHHHHHHHHHHH
Confidence 12223456778999999999999999999999988654 22111000 00 00112345567899999
Q ss_pred HCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 455 ACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|+.++|...|...+..+|-+....
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHH
Confidence 99999999999999999998876543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-07 Score=97.13 Aligned_cols=298 Identities=17% Similarity=0.106 Sum_probs=217.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC----ccHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG----ISSMFNNNL 399 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~----~~a~~~nnL 399 (854)
.++++--++..++-++|...+-.+++.+ |...++++.+|+++-.+|..++||.+-+..+.. |+ ....++..|
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHH
Confidence 3456777888999999999999999999 999999999999999999999999999998873 32 234567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.=|...|=++.|...|...... ......++-.|-.+|....++++|+++-++...+.|....
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de----------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~- 176 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDE----------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR- 176 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcc----------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-
Confidence 99999999999999999987764 1224567888999999999999999999999999998655
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 003047 480 WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQC 559 (854)
Q Consensus 480 w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~ 559 (854)
..+|.+|..+-... . +....+.|+.-
T Consensus 177 -~eIAqfyCELAq~~-------------------------------------~----------------~~~~~d~A~~~ 202 (389)
T COG2956 177 -VEIAQFYCELAQQA-------------------------------------L----------------ASSDVDRAREL 202 (389)
T ss_pred -hHHHHHHHHHHHHH-------------------------------------h----------------hhhhHHHHHHH
Confidence 56788877433320 0 00124669999
Q ss_pred HHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhh
Q 003047 560 LLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNS 639 (854)
Q Consensus 560 l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~ 639 (854)
+.+|+.-+|+..-+
T Consensus 203 l~kAlqa~~~cvRA------------------------------------------------------------------ 216 (389)
T COG2956 203 LKKALQADKKCVRA------------------------------------------------------------------ 216 (389)
T ss_pred HHHHHhhCccceeh------------------------------------------------------------------
Confidence 99999988885421
Q ss_pred ccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC-ChHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 640 LSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD-CSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717 (854)
Q Consensus 640 i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~-~~~~~~~la~lY~aeAl~~lgr~~eAl~~l 717 (854)
+ ..+|.|.+..|+|..|++.++.+++ .|+ .+.+.-.|.. ++..+|++++.+.+|
T Consensus 217 -----------------s--i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~-----~Y~~lg~~~~~~~fL 272 (389)
T COG2956 217 -----------------S--IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE-----CYAQLGKPAEGLNFL 272 (389)
T ss_pred -----------------h--hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH-----HHHHhCCHHHHHHHH
Confidence 1 1357899999999999999999998 444 3444444443 566899999999999
Q ss_pred HhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHH
Q 003047 718 SMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERA 797 (854)
Q Consensus 718 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A 797 (854)
.++.. .. + .+.+-.-|+..-..+.=.++|
T Consensus 273 ~~~~~--~~--------------------------------------~-----------g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 273 RRAME--TN--------------------------------------T-----------GADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHHHH--cc--------------------------------------C-----------CccHHHHHHHHHHHhhChHHH
Confidence 99993 11 0 011112255555556666777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHh
Q 003047 798 HHFVTQALSILPRSTEATLTAIYV--DLMLGKSQEALAKLKY 837 (854)
Q Consensus 798 ~~~~~~Al~~~P~~~~a~~l~~y~--~L~~G~~~eA~~~lk~ 837 (854)
...+.+-+...|+---...+.-|- ..-.|+..+-+-.+++
T Consensus 302 q~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 302 QAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 777777778777652222222221 2234556666666665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-06 Score=108.02 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a 393 (854)
+....+.++...|++++|...++.++... |... .+...+|.++...|++++|...+.+++.. ..+....
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 44456788899999999999999999865 5432 35577899999999999999999999863 1222234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.++.++|.++...|++++|..++++++.......... .+.....+..+|.++...|++++|..++.+++.+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ--------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 5677899999999999999999999999844321000 01123445678999999999999999999999876
Q ss_pred CCCH-----HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCC
Q 003047 474 YKQP-----LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQ 548 (854)
Q Consensus 474 P~~~-----~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~ 548 (854)
.... ..+..+|.+.. ..
T Consensus 604 ~~~~~~~~~~~~~~la~~~~---~~------------------------------------------------------- 625 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISL---AR------------------------------------------------------- 625 (903)
T ss_pred hccCchHHHHHHHHHHHHHH---Hc-------------------------------------------------------
Confidence 5321 11222222221 00
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccccc
Q 003047 549 PKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQK 628 (854)
Q Consensus 549 ~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~ 628 (854)
...+.|...++.++.+.+...... .
T Consensus 626 --G~~~~A~~~l~~a~~~~~~~~~~~------------------------------------------------~----- 650 (903)
T PRK04841 626 --GDLDNARRYLNRLENLLGNGRYHS------------------------------------------------D----- 650 (903)
T ss_pred --CCHHHHHHHHHHHHHHHhcccccH------------------------------------------------h-----
Confidence 124668899999887755421100 0
Q ss_pred CCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHHhc
Q 003047 629 GGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIFLGHIYAAEALCLL 707 (854)
Q Consensus 629 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~~~~~~~la~lY~aeAl~~l 707 (854)
.. . .........+...|+...|.......... +..... ...-.+..+.++...
T Consensus 651 ------~~---------------~----~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 651 ------WI---------------A----NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-LQGQWRNIARAQILL 704 (903)
T ss_pred ------Hh---------------h----HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh-HHHHHHHHHHHHHHc
Confidence 00 0 00000112345589999999998776652 111111 111123466788899
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 003047 708 NRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAM 787 (854)
Q Consensus 708 gr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~ 787 (854)
|++++|+.+|++++. .. +.. + .+ .-.+.++..+|.+
T Consensus 705 g~~~~A~~~l~~al~--~~---------------~~~----g--------------~~---------~~~a~~~~~la~a 740 (903)
T PRK04841 705 GQFDEAEIILEELNE--NA---------------RSL----R--------------LM---------SDLNRNLILLNQL 740 (903)
T ss_pred CCHHHHHHHHHHHHH--HH---------------HHh----C--------------ch---------HHHHHHHHHHHHH
Confidence 999999999999983 10 000 0 00 0146677789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 788 FAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 788 ~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
+..+|+.++|..++++|+++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999987544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=118.89 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
+...|.-.+..|+|++|+++|.+++. .+|. .+.++.++|.+|..+|++++|+.++++++.+ .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~-~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----------------~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAID-LDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL----------------D 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------C
Confidence 55678999999999999999999999 7885 6789999999999999999999999999998 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
+....+++++|.+|+.+|+|++|+.+|++++.++|+++.++..++.|.-.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999886644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=110.58 Aligned_cols=134 Identities=23% Similarity=0.229 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...++|+.+++.+.|.++++.+-+.+ .|.+-..+..|.+.+..| ++++|+-+|+.... ..+ ..+..++.+++++
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~-~t~~~lng~A~~~ 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFG-STPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS---SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccC-CCHHHHHHHHHHH
Confidence 36789999999999999999999999 898888888888988877 59999999999776 444 3578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhcCCCHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP-VLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~-eeAl~~y~kAL~l~P~~~~a 479 (854)
..+|+|++|...+++|+.. .+.++.++.|+..+...+|+. +.+.+++.+.-..+|++|.+
T Consensus 212 l~~~~~~eAe~~L~~al~~----------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEK----------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHhCCHHHHHHHHHHHHHh----------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999876 345678999999999999998 56668888888899998865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.9e-08 Score=117.16 Aligned_cols=223 Identities=9% Similarity=-0.070 Sum_probs=156.1
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|.+..+|..+..+|...+++++|+.+.+..++..+..-. .++.++.+|.+.+++++|.-+ +++.+....
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-----~yy~~G~l~~q~~~~~~~~lv-----~~l~~~~~~ 96 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-----ALYISGILSLSRRPLNDSNLL-----NLIDSFSQN 96 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-----hHHHHHHHHHhhcchhhhhhh-----hhhhhcccc
Confidence 5778889999999999999999999999988886544333 477778899999999999743 333222000
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
T Consensus 97 -------------------------------------------------------------------------------- 96 (906)
T PRK14720 97 -------------------------------------------------------------------------------- 96 (906)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
.++ .+.+.+-..+... |++..+++.+|.+|-.+|++++|+..|+
T Consensus 97 ---------------------------------~~~-~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 97 ---------------------------------LKW-AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred ---------------------------------cch-hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 000 0111111122223 6677788888888888888888888888
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc-------------CCc--cc---------cccc
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK-------------DKP--LK---------LLTF 437 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~-------------~~~--l~---------~~~~ 437 (854)
++++ .+| .++.++||+|..|... +.++|+.++.||+...-+... .++ .. ....
T Consensus 141 r~L~-~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 141 RLVK-ADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHh-cCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 8888 677 4677888888888777 888888888888776211000 000 00 0001
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
....-...++-+-.+|-..+++++++..|+.+|+++|+|..+...|+.|+...+..
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~ 273 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKD 273 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccC
Confidence 11223556677778999999999999999999999999999999999999965543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=91.52 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+..++.+|..++..|++++|++.|.+++. ..|+. .+.+++.+|.++.+.|++++|+.+|++++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------- 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLK-KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-------- 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC--------
Confidence 46789999999999999999999999998 45532 25678889999999999999999999999873211
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+..+.+++++|.++...|++++|+.+|++++..+|+++.+.
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 73 -----PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred -----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 12357899999999999999999999999999999987653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-07 Score=95.80 Aligned_cols=131 Identities=12% Similarity=0.001 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
...+...+-...... |++.+. ...+..++..|+-+.++.+..++.. ..|. ...+++.+|....+.|++.+|+..|
T Consensus 49 ~~~a~~al~~~~~~~--p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 49 TQGAAAALGAAVLRN--PEDLSI-AKLATALYLRGDADSSLAVLQKSAI-AYPK-DRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred hhHHHHHHHHHHhcC--cchHHH-HHHHHHHHhcccccchHHHHhhhhc-cCcc-cHHHHHHHHHHHHHhcchHHHHHHH
Confidence 334666677777888 999999 9999999999999999999999777 5664 4667777999999999999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|+... .|++.++|.-+|.+|.+.|++++|...|.+++++.|+.|.+..|||..++
T Consensus 124 rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 124 RKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 999998 46778999999999999999999999999999999999999999998877
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=85.66 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG-KPVLAARCFQKSS 470 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G-k~eeAl~~y~kAL 470 (854)
++.+|+++|.++..+|++++|+.+|++++.. .+.++.+|+++|.+++.+| ++++|+.+|++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4678999999999999999999999999998 3557899999999999999 7999999999999
Q ss_pred HhcC
Q 003047 471 LVFY 474 (854)
Q Consensus 471 ~l~P 474 (854)
+++|
T Consensus 66 ~l~P 69 (69)
T PF13414_consen 66 KLDP 69 (69)
T ss_dssp HHST
T ss_pred HcCc
Confidence 9998
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-08 Score=97.28 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
|....+++.+|..+...|++++|+.+|++++. ..|+ ....++.++|.+|..+|++++|+.+|++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 101 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------- 101 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 56677889999999999999999999999997 3332 23568999999999999999999999999998
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHhcCCC
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGK--------------PVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk--------------~eeAl~~y~kAL~l~P~~ 476 (854)
.+.....++++|.++...|+ +++|++++++++.++|++
T Consensus 102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 23456788899999999988 688999999999999997
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=90.66 Aligned_cols=147 Identities=17% Similarity=0.078 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.|+..+-..++.++|++-++++++-+ |.|...+--+--+...+|+..+||+.+..-++ ..+. ...+|.-++.+|..
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~-D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMN-DQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcC-cHHHHHHHHHHHHh
Confidence 46778888899999999999999999 99999988888888899999999999999998 6774 47889999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
.|+|.+|..||++.+-+ +|-.+..+-.+|.+++-+|. ++-|.++|.+++++.|.+.++|+-
T Consensus 167 ~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 99999999999999887 34455566677888777765 677999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003047 483 LAECCLMALE 492 (854)
Q Consensus 483 La~~~i~~~~ 492 (854)
+-.||..+-.
T Consensus 231 I~lc~~~la~ 240 (289)
T KOG3060|consen 231 IYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHH
Confidence 9999886554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=93.86 Aligned_cols=347 Identities=18% Similarity=0.155 Sum_probs=184.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHH-HHHHHhhhcccCCC
Q 003047 31 AKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALN--NVKNK-SEELARATGEQTEG 107 (854)
Q Consensus 31 ~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~--~~~~~-~~~~~~~~~~~~~~ 107 (854)
.--|..+|..|+|++|+..|.-+-+.+.-+++++-||+.++||.+.|-.++....... -+... +--+++.-..+..
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~- 139 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR- 139 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH-
Confidence 3468999999999999999999999777789999999999999987554333210000 00000 0000000000000
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQI 187 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~ 187 (854)
. -++ ..++. |...-...+|.+.|..-.|.+||++|.+++.. ..++.+..|
T Consensus 140 ---------~---------~~f-------h~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNV 189 (557)
T KOG3785|consen 140 ---------I---------LTF-------HSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNV 189 (557)
T ss_pred ---------H---------HHH-------HHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHH
Confidence 0 000 00111 12234557788999999999999999999884 334555433
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhh
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENAL 267 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (854)
.++-.|....=|+-+.++|+-|-+.++-+ ..+ .|-..-++
T Consensus 190 --y~ALCyyKlDYydvsqevl~vYL~q~pdS------------------------------------tiA--~NLkacn~ 229 (557)
T KOG3785|consen 190 --YMALCYYKLDYYDVSQEVLKVYLRQFPDS------------------------------------TIA--KNLKACNL 229 (557)
T ss_pred --HHHHHHHhcchhhhHHHHHHHHHHhCCCc------------------------------------HHH--HHHHHHHH
Confidence 34567888888898988888776655322 000 00000011
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 268 SRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
.+.+...+.+.+... +. .+. ..+|.+.-.+.|-.+-+. ++-+.|++-+-.+
T Consensus 230 fRl~ngr~ae~E~k~----la---------------------dN~---~~~~~f~~~l~rHNLVvF-rngEgALqVLP~L 280 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKE----LA---------------------DNI---DQEYPFIEYLCRHNLVVF-RNGEGALQVLPSL 280 (557)
T ss_pred hhhhccchhHHHHHH----HH---------------------hcc---cccchhHHHHHHcCeEEE-eCCccHHHhchHH
Confidence 111222222222221 00 000 011222111111111111 1223344444444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
++.- |++.+++...|..+++.++|+.+.+. .+|. .+.-|.-.|.++...|+-.-..+.++-|-+.+.-++
T Consensus 281 ~~~I-----PEARlNL~iYyL~q~dVqeA~~L~Kd----l~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 281 MKHI-----PEARLNLIIYYLNQNDVQEAISLCKD----LDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HhhC-----hHhhhhheeeecccccHHHHHHHHhh----cCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 4433 45667777777777777777776555 3442 233344467777777665444444444333211000
Q ss_pred cC----Ccc----------------c--------cc-cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-CCCH
Q 003047 428 KD----KPL----------------K--------LL-TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-YKQP 477 (854)
Q Consensus 428 ~~----~~l----------------~--------~~-~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-P~~~ 477 (854)
.. +.+ + +. -+.+ +....+|++-++...|.|.+|.+.|.++-.-. .+..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N--dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN--DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 00 000 0 00 0111 23456799999999999999999999877666 4455
Q ss_pred HHHHHHHHHHHH
Q 003047 478 LLWLRLAECCLM 489 (854)
Q Consensus 478 ~aw~~La~~~i~ 489 (854)
.....||.|+|+
T Consensus 429 ~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 429 LYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHh
Confidence 567788999993
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-08 Score=82.85 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
.++.+|..++..|++++|++++++++. ..|. ...++..+|.+|...|++++|+.+|++++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------- 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-LDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD--------------- 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 467778888888888888888888887 5663 35677778888888888888888888888762
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+....+++.+|.++...|++++|..+|.+++.+.|+
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 -PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 233467778888888888888888888888877764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=107.20 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=119.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
+..+|...|+.++|.+-+.+.++ . |+++..|..+|++.....=|++|.++.+..-. .+...+|....+.
T Consensus 430 vi~CY~~lg~~~kaeei~~q~le-k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELE-K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSN 498 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhc-C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccc
Confidence 46689999999999988888888 6 88899999999999999999999998776543 3445577877789
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
++|+++...|+.+|.+ ++-....||++|-+.++++++..|..+|..++.++|++..+|.+++-.
T Consensus 499 ~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 9999999999999998 445678999999999999999999999999999999999999999999
Q ss_pred HH
Q 003047 487 CL 488 (854)
Q Consensus 487 ~i 488 (854)
++
T Consensus 563 yi 564 (777)
T KOG1128|consen 563 YI 564 (777)
T ss_pred HH
Confidence 98
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=90.62 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+..++..|++++|.+.++.++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-ChHHHHHHHHH
Confidence 34567888999999999999999999999 99999999999999999999999999999999 6784 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~ 423 (854)
|..+|++++|+.+|+++++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999984
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-07 Score=95.00 Aligned_cols=359 Identities=13% Similarity=0.075 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------------cC
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--------------TE 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--------------~d 388 (854)
+.++-+-+|...|++++|..+++.+++.+ --+.+..+.+|-.++-.|.|.+|..+-.++.+. .+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 44455667777888888888888888877 666677778888888888888887776665441 00
Q ss_pred CC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 389 MG----------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 389 p~----------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.. +...-...|+.+++..-.|.+||..|+++|...+.+ ..+--+++.||.++.-
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey----------------~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY----------------IALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh----------------hhhHHHHHHHHHhcch
Confidence 00 011122345556655566777777777776652211 1122356777777777
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCC
Q 003047 459 PVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEK 538 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g 538 (854)
|+-+.+.+.-.|...|+++-+..-++-....+...+..++ + -+ .+
T Consensus 201 ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~--------E----------~k-----------~l------ 245 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAED--------E----------KK-----------EL------ 245 (557)
T ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHH--------H----------HH-----------HH------
Confidence 7777777777777777777665555433332222110000 0 00 01
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccc
Q 003047 539 DDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQV 618 (854)
Q Consensus 539 ~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (854)
+.....+++|+..-+|.-|.+...-+.+
T Consensus 246 -------adN~~~~~~f~~~l~rHNLVvFrngEgA--------------------------------------------- 273 (557)
T KOG3785|consen 246 -------ADNIDQEYPFIEYLCRHNLVVFRNGEGA--------------------------------------------- 273 (557)
T ss_pred -------HhcccccchhHHHHHHcCeEEEeCCccH---------------------------------------------
Confidence 1111123556655555333333322210
Q ss_pred ccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 003047 619 TANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHI 698 (854)
Q Consensus 619 ~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~l 698 (854)
.+ .+|+-..+.+ -+..+|..-|+..+|-.+|+...+.+ .|..|-.|..-|.+
T Consensus 274 -----------------Lq-VLP~L~~~IP--------EARlNL~iYyL~q~dVqeA~~L~Kdl--~PttP~EyilKgvv 325 (557)
T KOG3785|consen 274 -----------------LQ-VLPSLMKHIP--------EARLNLIIYYLNQNDVQEAISLCKDL--DPTTPYEYILKGVV 325 (557)
T ss_pred -----------------HH-hchHHHhhCh--------HhhhhheeeecccccHHHHHHHHhhc--CCCChHHHHHHHHH
Confidence 00 1222222222 23456677799999999999888765 45555566555554
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcC-CCCCCCCCCchhhhhhhHhhhh--------hhhhc----cCCCCCCCCCCCCCC
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSG-GDNFDLPFSGEDCEQWRVEKII--------DCEEL----NGGPAAAKNPSPEDS 765 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--------d~~~~----~~~~~~~~~~~~~~p 765 (854)
.+ .+|+-....+|+.-+-.- .. ++-|..+++..-|+... -|+++ +.+.
T Consensus 326 ~a-----alGQe~gSreHlKiAqqffql---VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~----------- 386 (557)
T KOG3785|consen 326 FA-----ALGQETGSREHLKIAQQFFQL---VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE----------- 386 (557)
T ss_pred HH-----HhhhhcCcHHHHHHHHHHHHH---hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44 356665555565443200 00 01111111111111100 01110 0000
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~-P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
. +..+ .-...+|+|.+.+.-|+|.+|++.|-++-... -+.......++-++++.|+.+-||.++-+..
T Consensus 387 s--YF~N----dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 387 S--YFTN----DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred H--HhcC----cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 0 0000 23556899999999999999999998875543 2344456677888889999999999987633
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-08 Score=102.81 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=105.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.=....+++.+|+..+..+|+++ |+|+-+|-++|.+|.++|+|+.|++-+++++. .||+ ...+|-.||.+|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChH-HHHHHHHHHHHHHccC
Confidence 444567789999999999999999 99999999999999999999999999999999 8995 5789999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH---HHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV---LAARCFQKSSL 471 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e---eAl~~y~kAL~ 471 (854)
++.+|+..|+|||.+. |.+...+-||..+-..++... .+...++-+..
T Consensus 164 k~~~A~~aykKaLeld----------------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELD----------------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred cHHHHHHHHHhhhccC----------------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence 9999999999999993 445567778888877777766 34444444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=91.39 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=100.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHHHHHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGCIYYQ 405 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~iy~~ 405 (854)
.+..++...+.+.++.++..+ |+. ..+.+.+|.+++..|++++|++.|+.++. ..| .....+...|+.++..
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHH
Confidence 336889999988899999999 999 66778999999999999999999999998 333 2335678889999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
.|++++|+..+++.-. .+..+.++.-+|.+|+..|++++|+..|++||
T Consensus 98 ~~~~d~Al~~L~~~~~-----------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQIPD-----------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHhccC-----------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999966211 12345677789999999999999999999985
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=94.79 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVF 415 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~ 415 (854)
..+...+.+.++.........+++.+|.++..+|++++|+..|.+++. ..|+ ..+.+++++|.+|..+|++++|+.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444441123356779999999999999999999999987 3332 2356899999999999999999999
Q ss_pred HHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH-------HCCCcH-------HHHHHHHHHHHhcCCCH
Q 003047 416 LSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL-------ACGKPV-------LAARCFQKSSLVFYKQP 477 (854)
Q Consensus 416 f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll-------~~Gk~e-------eAl~~y~kAL~l~P~~~ 477 (854)
|++++.+. +.....++++|.++. ..|+++ +|+.+|++++..+|++.
T Consensus 95 ~~~Al~~~----------------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 95 YFQALERN----------------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhC----------------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999982 233466777777777 777876 66667777888888653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=95.57 Aligned_cols=145 Identities=15% Similarity=0.048 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
...+..|...|+-+.+..-..++...+ |.+...+..+|...+..|+|.+|+..+.++.. ..|+ +..+|+.+|.+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~-d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPT-DWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCC-ChhhhhHHHHHHH
Confidence 556778888899999999999988888 99999998899999999999999999999999 7885 5789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
+.|+.++|-.-|.|++++. +..+.++.|+|..|+..|+++.|...+.++...-+.+..+..+|+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~----------------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 146 QLGRFDEARRAYRQALELA----------------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HccChhHHHHHHHHHHHhc----------------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999993 345678999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 003047 485 ECCLM 489 (854)
Q Consensus 485 ~~~i~ 489 (854)
.+...
T Consensus 210 l~~~~ 214 (257)
T COG5010 210 LVVGL 214 (257)
T ss_pred HHHhh
Confidence 88773
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-07 Score=98.78 Aligned_cols=214 Identities=14% Similarity=0.045 Sum_probs=138.6
Q ss_pred chhhHHHHHHH-HHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 142 EFDVSVAKLNI-AVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 142 ~~~~~~~~~n~-a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+.+.+..+|+. |..|...|+|++|.+.|+++........+.. +...+...+.+|... ++++|+ .+|+++..+.
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai---~~~~~A~~~y- 104 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI---ECYEKAIEIY- 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH---HHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH---HHHHHHHHHH-
Confidence 67787788887 7889999999999999999988766666654 333444455666555 777776 4556655332
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
T Consensus 105 -------------------------------------------------------------------------------- 104 (282)
T PF14938_consen 105 -------------------------------------------------------------------------------- 104 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-cCHHHHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR-RNHRKAIK 378 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~-g~~~kAl~ 378 (854)
...|++..|-+ .+..+|.+|... |++++|++
T Consensus 105 --------------------------------~~~G~~~~aA~----------------~~~~lA~~ye~~~~d~e~Ai~ 136 (282)
T PF14938_consen 105 --------------------------------REAGRFSQAAK----------------CLKELAEIYEEQLGDYEKAIE 136 (282)
T ss_dssp --------------------------------HHCT-HHHHHH----------------HHHHHHHHHCCTT--HHHHHH
T ss_pred --------------------------------HhcCcHHHHHH----------------HHHHHHHHHHHHcCCHHHHHH
Confidence 23344443332 334455666666 78888888
Q ss_pred HHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH
Q 003047 379 LLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 379 ~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
+|++++.. ..+.....++.++|.++.++|+|++|++.|+++.....+.... ...--..++..++|++
T Consensus 137 ~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~---------~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 137 YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL---------KYSAKEYFLKAILCHL 207 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT---------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc---------chhHHHHHHHHHHHHH
Confidence 88888773 2232345677789999999999999999999998863211000 0111246678999999
Q ss_pred HCCCcHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHhccccC
Q 003047 455 ACGKPVLAARCFQKSSLVFYKQPLL-WLRLAECCLMALEKGLVA 497 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~~~~a-w~~La~~~i~~~~~~~~e 497 (854)
..|++..|..+|++...++|..... =..+..-++...+.+..+
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999976432 123344444444554333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-07 Score=102.35 Aligned_cols=121 Identities=22% Similarity=0.186 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.-..+++-.+..++..|.+++|++.+...++ ..| +++.++-..|.++...++..+|++.|++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~-~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---------- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA-AQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD---------- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------
Confidence 77889999999999999999999999999999 789 478788888999999999999999999999983
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
|...-.++|+|.+|+..|++.+|+..++..+.-+|++|..|..||+.|-..+.
T Consensus 371 ------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 371 ------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred ------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 33467889999999999999999999999999999999999999999985333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-07 Score=104.38 Aligned_cols=146 Identities=17% Similarity=0.101 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.+++.+......+++.++.+.++..++++ |-....||..|-+..+.++++.|.+.|...+. .+|+ +..+|||+.+.
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvt-L~Pd-~~eaWnNls~a 562 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-LEPD-NAEAWNNLSTA 562 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-cCCC-chhhhhhhhHH
Confidence 44555666667899999999999999999 99999999999999999999999999999999 8994 78999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~aw 480 (854)
|.++|+-.+|-..+++|++. +..+...|.|--.+....|.+++|++.|.+.+.+..+ ++.+.
T Consensus 563 yi~~~~k~ra~~~l~EAlKc----------------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKC----------------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhc----------------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 99999999999999999997 2235678888899999999999999999998876643 35556
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..+....+
T Consensus 627 ~~iv~~~~ 634 (777)
T KOG1128|consen 627 LIIVRTVL 634 (777)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=104.01 Aligned_cols=110 Identities=13% Similarity=0.005 Sum_probs=97.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++..++..+++++|++.+++++.++ |+++.+++.+|.+++..|++++|+..+++++. .+|. .+.+|+++|.+|..+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIE-LDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHh
Confidence 5777788999999999999999999 99999999999999999999999999999999 7884 688999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
|+|++|+.+|++++.+. +.+..+...++.|...+
T Consensus 84 g~~~eA~~~~~~al~l~----------------P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLA----------------PGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHH
Confidence 99999999999999983 33455565566665444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=91.44 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=85.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+-.+...|++++|.+-++.++.++ |.+..+|+.+|.++..+|+|.+|+..|.+++. .+|+ .+..+.++|.+|+..|
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CchHHHHHHHHHHHcC
Confidence 344557899999999999999999 99999999999999999999999999999999 7885 5678888999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 003047 408 KYHTSSVFLSKALSNS 423 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~ 423 (854)
+.+.|.+.|+.|+...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999984
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-05 Score=89.75 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
.+.+|+..++...|++++|++.++.....- +|...++-.+|.+++..|++++|.+.|...+. .+|+ +..+|..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHH
Confidence 367899999999999999999999888888 89999999999999999999999999999999 7884 5677777766
Q ss_pred HHHHcC-----CHHHHHHHHHHHHH
Q 003047 402 IYYQLA-----KYHTSSVFLSKALS 421 (854)
Q Consensus 402 iy~~~g-----~~~eAi~~f~kAL~ 421 (854)
+..-.. ..+.-...|++.-.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~ 105 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAE 105 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHH
Confidence 663332 33444555554333
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=80.87 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNS 423 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~ 423 (854)
+++..++.+|..++..|+|++|+.+|.+++. .+|. .+.+++++|.+|..+| ++.+|+.+|++++++.
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-LDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3678899999999999999999999999999 7895 6889999999999999 7999999999999973
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-08 Score=84.66 Aligned_cols=82 Identities=27% Similarity=0.261 Sum_probs=50.4
Q ss_pred hcCHHHHHHHHHHhhhccCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 370 RRNHRKAIKLLLALSNRTEMGI-SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~~dp~~-~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
+|+|++|+.++++++. .+|.+ ...+++++|.+|+++|+|++|+.++++ +.. .+......+.
T Consensus 2 ~~~y~~Ai~~~~k~~~-~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----------------~~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE-LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----------------DPSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHH-HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----------------HHCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----------------CCCCHHHHHH
Confidence 4677777777777776 44421 344555677777777777777777777 433 1223455556
Q ss_pred HHHHHHHCCCcHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kA 469 (854)
+|.|++.+|++++|+.+|+++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 677777777777777777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.9e-05 Score=82.20 Aligned_cols=303 Identities=15% Similarity=0.048 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.+..-..+|+.-+..|+|.+|.++..+.-+-. ..|.+.+-+| ++..... .++..+=..+.++.+ .+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~a-A~AA~qr----gd~~~an~yL~eaae--------~~ 148 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLA-AEAAQQR----GDEDRANRYLAEAAE--------LA 148 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHH-HHHHHhc----ccHHHHHHHHHHHhc--------cC
Confidence 45666789999999999999999999855433 3344444333 2221111 122222233333331 11
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
. |+ +--.....+.++...|+|+.|.+-..++...-+-..+
T Consensus 149 ~-----------------------------------~~-~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~---- 188 (400)
T COG3071 149 G-----------------------------------DD-TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE---- 188 (400)
T ss_pred C-----------------------------------Cc-hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----
Confidence 1 12 2224446799999999999999999999994433333
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhh----hhhh
Q 003047 186 QICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLA----ATVN 261 (854)
Q Consensus 186 ~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 261 (854)
+.-+....|+..|++...+.++..++|+--+..+ |.. -.+.
T Consensus 189 -vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~----------------------------------e~~~le~~a~~ 233 (400)
T COG3071 189 -VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE----------------------------------EAARLEQQAWE 233 (400)
T ss_pred -HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH----------------------------------HHHHHHHHHHH
Confidence 5666779999999999999999999987655411 110 0111
Q ss_pred hhhhhhhhhhh-hhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHH
Q 003047 262 ASENALSRTLS-EETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHA 340 (854)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A 340 (854)
+++......-+ +....+ .+++ +........|.+.-+.=++..|+.++|
T Consensus 234 glL~q~~~~~~~~gL~~~-----------------------W~~~--------pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 234 GLLQQARDDNGSEGLKTW-----------------------WKNQ--------PRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHhccccchHHHHH-----------------------HHhc--------cHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 11111000000 000000 0011 111222235666667788999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 341 KREVKLAMNIARGKDSSLALFLKSQL-EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~~lla~l-y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
.+-++..++.. =|.. +...+ ...-+++.+=++..++.++ ..|+ .+..+.-||..|++.+.+.+|..+|+.|
T Consensus 283 ~~~i~~~Lk~~--~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 283 QEIIEDALKRQ--WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPE-DPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHhc--cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999987 3333 11122 3366888888888899998 6774 5688888999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
+.. -+....+.-+|.++.++|++++|-+++++++.+.
T Consensus 355 l~~-----------------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 355 LKL-----------------RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred Hhc-----------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 997 2345677788999999999999999999998554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-05 Score=90.06 Aligned_cols=321 Identities=14% Similarity=0.102 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCC
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTE 106 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (854)
++-++.++....+.|+|++|+++|++....-.+...++...|.+++..+. +.++..-.+.-+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~------~~eA~~~y~~Li~----------- 66 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGR------KEEAEKIYRELID----------- 66 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH-----------
Confidence 45678889999999999999999998888777778888888877665543 2233333333331
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-----cHHHHHHHHHHhhhccCCCch
Q 003047 107 GGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-----EYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-----~y~~A~~~~e~l~~~~~~~~e 181 (854)
.+|+|..++..+..+..... +-++-.++|+++....+. .+
T Consensus 67 ----------------------------------rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~-s~ 111 (517)
T PF12569_consen 67 ----------------------------------RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR-SD 111 (517)
T ss_pred ----------------------------------HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc-cc
Confidence 15778778877777763333 456667888777665532 22
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhh
Q 003047 182 TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVN 261 (854)
Q Consensus 182 ~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (854)
. ...+.+... ...++...+. .|+...+.-+ ||| .+
T Consensus 112 ~-~~rl~L~~~----~g~~F~~~~~--~yl~~~l~Kg-----------------------vPs---------------lF 146 (517)
T PF12569_consen 112 A-PRRLPLDFL----EGDEFKERLD--EYLRPQLRKG-----------------------VPS---------------LF 146 (517)
T ss_pred c-hhHhhcccC----CHHHHHHHHH--HHHHHHHhcC-----------------------Cch---------------HH
Confidence 1 111222221 1223444443 4556555332 111 11
Q ss_pred hhhhhhhhh------hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhc
Q 003047 262 ASENALSRT------LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTR 335 (854)
Q Consensus 262 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~ 335 (854)
.+.-.|+.. +.+-+..|.... +... +.++.+ +....+.....-..+|.++.|-..|
T Consensus 147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l-----~~~~---------~~~~~~----~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 147 SNLKPLYKDPEKAAIIESLVEEYVNSL-----ESNG---------SFSNGD----DEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHhh-----cccC---------CCCCcc----ccccCCchHHHHHHHHHHHHHHHhC
Confidence 111112211 112222222221 1000 000000 0000001111224577899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH-HHHHHHcCCHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL-GCIYYQLAKYHTSSV 414 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL-G~iy~~~g~~~eAi~ 414 (854)
++++|++.++++|+.. |..++.++.+|.++-..|++.+|.+.++.+-. .|+. ..+.|+. +.++.+.|+.++|++
T Consensus 209 ~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-LD~~--DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARE-LDLA--DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-CChh--hHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999 6774 3455554 667889999999998
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHH--HHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITY--NCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~--nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+..-..... ++.. .-..--..|| ..|.+|.+.|++-.|+..|..+..++-+.
T Consensus 284 ~~~~Ftr~~~-----~~~~----~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 284 TASLFTREDV-----DPLS----NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHhhcCCCC-----Cccc----CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7776544310 1000 0001124665 55999999999999999999998877543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=102.26 Aligned_cols=134 Identities=16% Similarity=0.045 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--------CHHHHHHHHHHhhhc-cCCCcc
Q 003047 325 LYKVRFLLLTRN---LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--------NHRKAIKLLLALSNR-TEMGIS 392 (854)
Q Consensus 325 l~K~~lyl~~~~---~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--------~~~kAl~~l~kal~~-~dp~~~ 392 (854)
+.+++-|+.... +.+|+..++++++++ |++..++-.++.+|.... +..++.+...+++.. .+|. .
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~ 419 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-L 419 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-C
Confidence 456666766554 779999999999999 999999999888886643 344566666665542 2553 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+|..+|..+...|++++|..+|++|+.+ . +...+|..+|.++...|++++|++.|++|+.+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----------------~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL----------------E-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 678888999999999999999999999998 2 35788999999999999999999999999999
Q ss_pred cCCCHH
Q 003047 473 FYKQPL 478 (854)
Q Consensus 473 ~P~~~~ 478 (854)
+|.+|.
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 999986
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=77.72 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|..|.+.|++++|+..|++++.. .|.+..+|+.+|.+++.+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5899999999999999999999998 355789999999999999999999999999999999986
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-07 Score=89.05 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=104.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++.+..+. ++..+..+..|.-++..|++++|.++|.-+.. .+|. +..++..||.++..+|+|++|+..|..|..+.
T Consensus 26 lk~l~gis--~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 26 LKDVHGIP--QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-YDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHhCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666 77788999999999999999999999999888 7884 67899999999999999999999999999972
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
. .++...|..|.||+.+|+.+.|..||..++. .|.+..+ -..+..++...+.
T Consensus 102 ~----------------~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l-~~~A~~~L~~l~~ 153 (165)
T PRK15331 102 K----------------NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL-RAKALVYLEALKT 153 (165)
T ss_pred c----------------CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH-HHHHHHHHHHHHc
Confidence 1 2234477899999999999999999999999 5665554 3445555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-07 Score=75.84 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+..+.++..+|++++|+..+++++... |++..+++.+|.++...+++++|+++|++++. ..|. ...++..+|.+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCc-chhHHHHHHHHHH
Confidence 345777888999999999999999999 99999999999999999999999999999998 6674 4568888999999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 003047 405 QLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~ 422 (854)
.+|++++|..+|.+++..
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999999876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=80.82 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--cHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI--SSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~a~~~n 397 (854)
+.+.++..++.+|++++|.+.++.++..+ |++ ..+++.+|.+++..|++++|+++|++++. ..|.. .+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HCCCCCcccHHHH
Confidence 34557888899999999999999999999 987 57899999999999999999999999998 55542 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
++|.+|.++|++++|+.+|++++..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-06 Score=94.87 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
...++=++..+.+.|++++|...+..++... |+|+.++-+.+.+++..++.++|++.+++++. .+|+ ......++|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-l~P~-~~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALA-LDPN-SPLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCC-ccHHHHHHH
Confidence 3455566777889999999999999999999 99999999999999999999999999999999 7995 477888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
..|.+.|++.+|+.+++..+...+..... +-+....-......++....+..|...|++++|+..+..+.+...-+...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 99999999999999999998874321000 00000000011223444444555555555555555555555555333333
Q ss_pred HHH
Q 003047 480 WLR 482 (854)
Q Consensus 480 w~~ 482 (854)
|.+
T Consensus 462 ~aR 464 (484)
T COG4783 462 WAR 464 (484)
T ss_pred HHH
Confidence 443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=93.11 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=85.6
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHhhhccCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 358 LALFLKSQLE-YARRNHRKAIKLLLALSNRTEMGI--SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 358 ~a~~lla~ly-~~~g~~~kAl~~l~kal~~~dp~~--~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
...|..|..+ +..|+|++|+..|++.++ ..|+. .+.+++.+|.+|+..|++++|+.+|++++...++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~-~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK-KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 4445555544 556899999999999988 56642 2567888999999999999999999999987331
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+++++.+|.++..+|++++|...|++++..+|+...+
T Consensus 213 ----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 213 ----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred ----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 23457889999999999999999999999999999998754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-07 Score=80.25 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=68.8
Q ss_pred hcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKD--SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~--~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+|+++.|+..+++++... |. +..+++.+|.+|+..|+|++|++++++ ++ .+|. +......+|.+|.++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 688999999999999999 95 567788899999999999999999999 55 3453 45666678999999999999
Q ss_pred HHHHHHHH
Q 003047 412 SSVFLSKA 419 (854)
Q Consensus 412 Ai~~f~kA 419 (854)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999986
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-06 Score=100.44 Aligned_cols=132 Identities=8% Similarity=-0.101 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..++..+...|...+++++|+.+++..+. ..|. ...+|+.+|.+|++.+++..|... +++.+.+.-.+....+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 88888888888888888888888888888887 6674 456777788888888888887776 6666532110000000
Q ss_pred ---cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 434 ---LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 434 ---~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
......+..-.+++.+|.||-.+|++++|+.+|+++|+++|+++.+..++|..+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 00001122346899999999999999999999999999999999999999988774
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-06 Score=89.42 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR--TEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+...|.++...|+|++|+++|+++... ..+. .....+...+.+|+.+|++..|...|++....++.+..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~------ 231 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS------ 231 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC------
Confidence 345567788889999999999998762 1111 12235667899999999999999999999888665531
Q ss_pred ccccCCccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhcC
Q 003047 435 LTFSQDKSLLITYNCGLQYLA--CGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~--~Gk~eeAl~~y~kAL~l~P 474 (854)
.........|-.++-. ...+++|+.-|++...++|
T Consensus 232 -----s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 232 -----SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp -----SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred -----cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 2223445555555443 3348888888888777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.3e-07 Score=97.70 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcc------CCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRT------EMG-------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~------dp~-------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
..|+.|+..|+|..|+..|++++... ++. ....+++||+.+|.++++|.+|+.+..++|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------ 286 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------ 286 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------
Confidence 56788888888888888888877620 000 12357889999999999999999999999998
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+.+..++|..|.+++.+|+|+.|+..|+++++++|+|-.+...|..|-.
T Consensus 287 ----------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 287 ----------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred ----------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999988766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=93.89 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+..+.+|...|++++|++.+.+. ++.+...+.-.+++.++|++.|.+.++...+ .++ +...+...-+++
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~e-D~~l~qLa~awv 174 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDE-DSILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCC-cHHHHHHHHHHH
Confidence 5566788888899999998776432 5678888999999999999999999999887 455 233333334666
Q ss_pred HHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 403 YYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 403 y~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
....| ++.+|...|+..-.. .+..+.++..++.+++.+|+|++|.+.+.+++..+|+++.++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 66666 699999999995432 123567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003047 481 LRLAECCLMALE 492 (854)
Q Consensus 481 ~~La~~~i~~~~ 492 (854)
.+++-|+...++
T Consensus 239 aNliv~~~~~gk 250 (290)
T PF04733_consen 239 ANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhCC
Confidence 999988885444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-07 Score=78.71 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
.+.+++++|.+|..+|++++|+.+|++++.+...++.. .+....+++++|.++..+|++++|+++|+++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999999984333211 112367899999999999999999999999998
Q ss_pred hc
Q 003047 472 VF 473 (854)
Q Consensus 472 l~ 473 (854)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 75
|
... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0012 Score=73.23 Aligned_cols=295 Identities=13% Similarity=0.040 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
...|..-+..|+|.+|.+...+.-+ -.+ .+...|.--+..-.++|+++.|-.|+.++-+.- .+
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae-~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~---------------~~ 150 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAE-HGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA---------------GD 150 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhh-cCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC---------------CC
Confidence 3445666678999999999988766 233 233444333556678999999999999987761 12
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccce
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRY 520 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~ 520 (854)
+.-.+.......++..|++..|..-..+++...|.++.+..-...||+..+.- .+ +..
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~---~~----------ll~--------- 208 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW---QA----------LLA--------- 208 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH---HH----------HHH---------
Confidence 23445567788899999999999999999999999999988888888854443 11 000
Q ss_pred eeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHh----hcCCCcccccccCCCCCCccccccccccccc
Q 003047 521 LVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALH----LLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 521 l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~----L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
+.+...+.... +-+++...=++|.. -.-+.... .
T Consensus 209 --~l~~L~ka~~l------------------~~~e~~~le~~a~~glL~q~~~~~~~---------------~------- 246 (400)
T COG3071 209 --ILPKLRKAGLL------------------SDEEAARLEQQAWEGLLQQARDDNGS---------------E------- 246 (400)
T ss_pred --HHHHHHHccCC------------------ChHHHHHHHHHHHHHHHHHHhccccc---------------h-------
Confidence 11110011111 11223332233322 11110000 0
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH--HHHHHHHHHHHHHcCCHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK--QALLANLAYVELEMENPVK 674 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~--~~~l~~la~v~l~lg~~~~ 674 (854)
| .+ ..+.. .+-.+| ..+.+.++--+..+|++++
T Consensus 247 -------------------------g----L~-----~~W~~-----------~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 247 -------------------------G----LK-----TWWKN-----------QPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred -------------------------H----HH-----HHHHh-----------ccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 0 00 00000 000001 0223344556789999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCC
Q 003047 675 ALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGP 754 (854)
Q Consensus 675 Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 754 (854)
|..+.++.|...-++..+.+.+. ...+++..=++..+..+.
T Consensus 282 A~~~i~~~Lk~~~D~~L~~~~~~-------l~~~d~~~l~k~~e~~l~-------------------------------- 322 (400)
T COG3071 282 AQEIIEDALKRQWDPRLCRLIPR-------LRPGDPEPLIKAAEKWLK-------------------------------- 322 (400)
T ss_pred HHHHHHHHHHhccChhHHHHHhh-------cCCCCchHHHHHHHHHHH--------------------------------
Confidence 99999999986655554444433 344555555555555552
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003047 755 AAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAK 834 (854)
Q Consensus 755 ~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~ 834 (854)
++|. ++.+++.||..+...+.|.+|...++.|++..|.. .....+++++.++|+.++|-++
T Consensus 323 -------------~h~~-----~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 323 -------------QHPE-----DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred -------------hCCC-----ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHH
Confidence 1223 46889999999999999999999999999988654 4566678888899999999998
Q ss_pred HHhcC
Q 003047 835 LKYCN 839 (854)
Q Consensus 835 lk~~~ 839 (854)
-+...
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 87743
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=83.51 Aligned_cols=167 Identities=15% Similarity=0.036 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~n 397 (854)
-.+.++..++..|++.+|++.++.++... |.. ..+++.+|..++..|+|.+|+..+++.+. ..|. ..+.+++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhhHHH
Confidence 44557888999999999999999999999 876 57889999999999999999999999998 4443 4567888
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHhchhccc-CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 398 NLGCIYYQLAK-----------YHTSSVFLSKALSNSASLRK-DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 398 nLG~iy~~~g~-----------~~eAi~~f~kAL~~~~~l~~-~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
.+|.++..+.+ ..+|+..|++.+...|+-.- .+.......-.+.-+.--+.+|..|+..|+|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 89999876543 34788888888887543110 0000000000112234456789999999999999999
Q ss_pred HHHHHHhcCCCHH---HHHHHHHHHHHHHh
Q 003047 466 FQKSSLVFYKQPL---LWLRLAECCLMALE 492 (854)
Q Consensus 466 y~kAL~l~P~~~~---aw~~La~~~i~~~~ 492 (854)
|+.+++-+|+.+. ++..|++++..++.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999964 58888888885433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-06 Score=82.66 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 320 ~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.....+..+.++..+|++++|+..+++++.+. |+. +.+++.+|.++...|++++|+++|++++. .+|. ....+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~-~~~~-~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE-RNPF-LPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-cHHHH
Confidence 34466778889999999999999999999998 763 45899999999999999999999999999 6774 57788
Q ss_pred HHHHHHHH-------HcCCHHHHHHHHHHHHHhch
Q 003047 397 NNLGCIYY-------QLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 397 nnLG~iy~-------~~g~~~eAi~~f~kAL~~~~ 424 (854)
+++|.+|. .+|++++|+.+|++++....
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 89999999 88899988888888887643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00027 Score=74.52 Aligned_cols=136 Identities=22% Similarity=0.242 Sum_probs=108.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEY----ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~----~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+|++.+.+++-|..++++..+++ -+ ..+..+|+.|. ..+++++|+-+|+..-.+..| .+..++.++++
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~id--ed--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~--T~~llnG~Av~ 216 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQID--ED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP--TPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--hH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC--ChHHHccHHHH
Confidence 4668888999999999999999998 33 34444555554 345799999999998774455 46789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHhcCCCHHH-H
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA-RCFQKSSLVFYKQPLL-W 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl-~~y~kAL~l~P~~~~a-w 480 (854)
+..+|+|++|...++.||.. .+.+++++-|+-.+-.+.|+..++. +...+.....|+++.+ +
T Consensus 217 ~l~~~~~eeAe~lL~eaL~k----------------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDK----------------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999999999999997 3456899999999999999988877 6667777788888765 3
Q ss_pred HHHH
Q 003047 481 LRLA 484 (854)
Q Consensus 481 ~~La 484 (854)
++-.
T Consensus 281 ~~ek 284 (299)
T KOG3081|consen 281 LNEK 284 (299)
T ss_pred HHHH
Confidence 4333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-05 Score=77.38 Aligned_cols=193 Identities=12% Similarity=0.019 Sum_probs=129.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+..++..|..++..|+|.+|+..|++.+...|. .+-...+.+.+|.+++..|++++|+..|++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34677888999999999999999999999987431 12346788999999999999999999999999
Q ss_pred HhcCCCH---HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQP---LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDG 547 (854)
Q Consensus 471 ~l~P~~~---~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~ 547 (854)
..+|+++ .+++.+|.|......... .. ..+
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-----------------------------~~-----~~D------------- 102 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGIL-----------------------------RS-----DRD------------- 102 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH------------------------------T-----T---------------
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccch-----------------------------hc-----ccC-------------
Confidence 9999985 579999999885433200 00 000
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccc
Q 003047 548 QPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQ 627 (854)
Q Consensus 548 ~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~ 627 (854)
......|...|+..+...|+..-.. .+ ..
T Consensus 103 --~~~~~~A~~~~~~li~~yP~S~y~~-----------------------~A-------------------------~~- 131 (203)
T PF13525_consen 103 --QTSTRKAIEEFEELIKRYPNSEYAE-----------------------EA-------------------------KK- 131 (203)
T ss_dssp ---HHHHHHHHHHHHHHHH-TTSTTHH-----------------------HH-------------------------HH-
T ss_pred --hHHHHHHHHHHHHHHHHCcCchHHH-----------------------HH-------------------------HH-
Confidence 1135789999999999999954310 00 00
Q ss_pred cCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHh
Q 003047 628 KGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCL 706 (854)
Q Consensus 628 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~ 706 (854)
.+.. +......--...|--++..|.|..|+..++.++. .|+.+..-. +..++++++..
T Consensus 132 ---~l~~----------------l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~--al~~l~~~y~~ 190 (203)
T PF13525_consen 132 ---RLAE----------------LRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE--ALARLAEAYYK 190 (203)
T ss_dssp ---HHHH----------------HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH--HHHHHHHHHHH
T ss_pred ---HHHH----------------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH--HHHHHHHHHHH
Confidence 0000 0000001123457789999999999999999998 677655444 44667889999
Q ss_pred cCCHHHHHH
Q 003047 707 LNRPKEAAE 715 (854)
Q Consensus 707 lgr~~eAl~ 715 (854)
+|..+.|..
T Consensus 191 l~~~~~a~~ 199 (203)
T PF13525_consen 191 LGLKQAADT 199 (203)
T ss_dssp TT-HHHHHH
T ss_pred hCChHHHHH
Confidence 999985543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-05 Score=77.36 Aligned_cols=128 Identities=23% Similarity=0.155 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhh
Q 003047 661 NLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWR 740 (854)
Q Consensus 661 ~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~ 740 (854)
..+...+..+++..+...+++++...+.+ .|..++.+.+|..++..|++++|+..|+..+....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s-~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-------------- 80 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSS-PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-------------- 80 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--------------
Confidence 33445557999999999999999743332 577889999999999999999999999999931100
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003047 741 VEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIY 820 (854)
Q Consensus 741 ~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y 820 (854)
| .-...+++.||.++..+|++++|+..++++ .-.+-.+.+..+++-
T Consensus 81 ------------------------~---------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 81 ------------------------P---------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------H---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHH
Confidence 1 115778899999999999999999999773 222334678889999
Q ss_pred HHHhcCCHHHHHHHHHh
Q 003047 821 VDLMLGKSQEALAKLKY 837 (854)
Q Consensus 821 ~~L~~G~~~eA~~~lk~ 837 (854)
+++++|++++|...+++
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999999999999875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=80.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN 398 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn 398 (854)
...+.++.+|...|++++|+..+++++.+. |+. ..+++.+|.++...|++++|+++|.+++. ..|. ....+.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-LNPK-QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-cHHHHHH
Confidence 356778889999999999999999999987 653 57899999999999999999999999999 7884 5778889
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHh
Q 003047 399 LGCIYYQLAK-------YHTSSVFLSKALSN 422 (854)
Q Consensus 399 LG~iy~~~g~-------~~eAi~~f~kAL~~ 422 (854)
+|.+|..+|+ +++|+.+|++|++.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 9999988776 44555555555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=78.70 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKI---LHNIAIAEYFRDGCTDPKKLLEALNNVKNKSE 95 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~---l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (854)
...+.++.+|...+.+|+|++|++.|++++...|..+.+ ++++|.++|.. .++.+++..+++-++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~------~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN------ADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999997644 58999888854 446667777777774
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-07 Score=77.84 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 353 GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 353 ~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
||+-..++..+|.+|..+|+|++|+++|++++.. ..+. ..+.++++||.+|..+|++++|+++|++++.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3666788999999999999999999999999973 1111 247789999999999999999999999999974
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=84.58 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc-C--CHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL-A--KYHTS 412 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~-g--~~~eA 412 (854)
..++-+..++.-+..+ |+|.+-|.++|.+|+.+|++..|...|.++++ ..| +++.++..+|.++..+ | .-.++
T Consensus 137 ~~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g-~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 137 EMEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALR-LAG-DNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred cHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHhcCCcccHHH
Confidence 3455667778888889 99999999999999999999999999999999 788 4688898888876543 3 35789
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
...|+++|.. .+.+..+.+.||..++..|+|.+|...+++.+...|.+.. |..+.+..|+.
T Consensus 213 ~~ll~~al~~----------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~ie~~ia~ 273 (287)
T COG4235 213 RALLRQALAL----------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHhc----------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHH
Confidence 9999999998 3456788889999999999999999999999999987755 55555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=71.19 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+.+|..++..|++++|+++|+++++ .+|. ++.++..+|.++..+|++++|+.+|++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK-QDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC-CSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567788888888888888888888 6774 5777888888888888888888888888876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-05 Score=81.68 Aligned_cols=163 Identities=11% Similarity=-0.048 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLAL---FLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNN 398 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~---~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nn 398 (854)
.+.++.-++..|++++|++.++.++... |..+.+. +.+|.+|+..++|++|+..+++.++ ..|+ ..+.+++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCcCCCchHHHHHH
Confidence 4456778888999999999999999999 9887665 8999999999999999999999999 4443 45788888
Q ss_pred HHHHHHHcCC------------------HHHHHHHHHHHHHhchhccc-CCccccccccCCccHHHHHHHHHHHHHCCCc
Q 003047 399 LGCIYYQLAK------------------YHTSSVFLSKALSNSASLRK-DKPLKLLTFSQDKSLLITYNCGLQYLACGKP 459 (854)
Q Consensus 399 LG~iy~~~g~------------------~~eAi~~f~kAL~~~~~l~~-~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ 459 (854)
+|.++..+++ -.+|+..|++.+...|+-.- .+.-.....-.+.-+.--+.+|..|++.|+|
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 9998765541 24688888888887543110 0000000000112234445789999999999
Q ss_pred HHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 003047 460 VLAARCFQKSSLVFYKQP---LLWLRLAECCLM 489 (854)
Q Consensus 460 eeAl~~y~kAL~l~P~~~---~aw~~La~~~i~ 489 (854)
..|+.-|+.++.-+|+.+ ++.+.|++.+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999885 568888888874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=74.72 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.++|.+|..+...|+.++|+.+|++++.. ..+.....++..+|..|..+|++++|+..|++++...++ +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~------ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----D------ 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----c------
Confidence 57899999999999999999999999983 112133668889999999999999999999999986321 0
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
+-...+...++.++...|++++|+..+..++.
T Consensus 72 ---~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ---ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11334555679999999999999999988776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.1e-05 Score=90.17 Aligned_cols=128 Identities=16% Similarity=0.008 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC--------
Q 003047 342 REVKLAMNIARGKDSSLAL--FLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK-------- 408 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~--~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~-------- 408 (854)
.+.+++.... |.+..+| ++.|..|+..+. +.+|+.+|+++++ .+|+ .+.++-.++.+|.....
T Consensus 324 ~e~~~~~~~~--~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~-~a~a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 324 RMQERLQQGL--PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPD-FTYAQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHhccC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHHhcCCccHHH
Confidence 3444555556 8888876 788988886655 8899999999999 8995 68888888888865422
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
...+.....+++.+.. .+..+.++.-+|..+...|++++|...|++|+.++| +..+|..+|.++.
T Consensus 400 l~~a~~~~~~a~al~~--------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 400 LAALSTELDNIVALPE--------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHhhhccc--------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3344444455444300 122356777789999999999999999999999999 5789999999888
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=85.22 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=80.6
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHc
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQL 406 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~ 406 (854)
+..|++++|+..++..+..+ |++ +.+++.+|.+|+..|++++|+..|.+++. ..|+ ..+.++..+|.+|..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~-~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK-NYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhHHHHHHHHHHHHc
Confidence 45689999999999999999 999 58999999999999999999999999997 3332 4678899999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 003047 407 AKYHTSSVFLSKALSNS 423 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~ 423 (854)
|++++|+.+|++++...
T Consensus 231 g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999999999973
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-06 Score=70.43 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
.+.|++++|+..|++++.. .|.+..+++.+|.+|+..|++++|...+.+++..+|+++.+|.-+
T Consensus 2 l~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 5789999999999999998 355788999999999999999999999999999999999988877
Q ss_pred HHH
Q 003047 484 AEC 486 (854)
Q Consensus 484 a~~ 486 (854)
+.+
T Consensus 66 a~i 68 (68)
T PF14559_consen 66 AQI 68 (68)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.7e-05 Score=72.78 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+..++..|...+..|+|++|++.|+.+... .| .....+...||.+|++.+++++|+..+++-+++.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------- 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------- 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 456788899999999999999999999884 33 244677888999999999999999999999998431
Q ss_pred ccccCCccHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHhcCCCHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGK---------------PVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk---------------~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+.-+.++|..|++++.+.. ..+|+..|++.+..+|++..+
T Consensus 80 ----hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 80 ----HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 22346789999999999887 889999999999999998754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=86.92 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
-.+|+-|+.+|+|++||.||.+.+. .+|. ++..+.|.+..|++++++..|..-+..|+.++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---------------- 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-VYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---------------- 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-cCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH----------------
Confidence 4578999999999999999999999 7894 688999999999999999999999999999832
Q ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 441 KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....+|-..|.+-..+|+.+||.+.|+.+|.+.|++-.+.-.++.+
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 2346777889999999999999999999999999998876666644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=67.79 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
|..+|.+.+++++|++++++++.. .|.+...|+..|.++..+|++++|.++|++++++.|+++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 357899999999999999999998 3456789999999999999999999999999999999988
Q ss_pred HHHHHH
Q 003047 479 LWLRLA 484 (854)
Q Consensus 479 aw~~La 484 (854)
+..-++
T Consensus 65 ~~~~~a 70 (73)
T PF13371_consen 65 ARALRA 70 (73)
T ss_pred HHHHHH
Confidence 765544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=90.91 Aligned_cols=67 Identities=9% Similarity=0.011 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS---MFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a---~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
|+++.+++++|..|+..|+|++|+.+|++++. .+|+ .+ .+|+|+|++|..+|++++|+.+|++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777777777777777777 6774 33 23666777777777777777777777664
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0013 Score=71.76 Aligned_cols=318 Identities=15% Similarity=0.092 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHH-----------HHHHHHHHHHhCCCChhHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPD----------DPKIL-----------HNIAIAEYFRDGCTDPKKL 83 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~----------~~~~l-----------~nla~~~~~~~~~~~~~~~ 83 (854)
+.+++-...|++.++..++.+|+..|.+.|..-.+ -+.+. +-+.++.... .+.+..-.
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~-~~~ds~~~ 82 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR-ELEDSDFL 82 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45677788999999999999999999999984111 12222 2222222221 12233333
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHH
Q 003047 84 LEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYA 163 (854)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~ 163 (854)
.++..++.+.-+.+..... -..|. -+..|..+ . -...++- ....-+|.+...++.|.
T Consensus 83 ~ea~lnlar~~e~l~~f~k---------t~~y~--k~~l~lpg---------t-~~~~~~g--q~~l~~~~Ahlgls~fq 139 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHK---------TISYC--KTCLGLPG---------T-RAGQLGG--QVSLSMGNAHLGLSVFQ 139 (518)
T ss_pred HHHHHHHHHHHHHHHHhhh---------HHHHH--HHHhcCCC---------C-Ccccccc--hhhhhHHHHhhhHHHHH
Confidence 5555555555443311110 00010 00000000 0 0000111 24445899999999999
Q ss_pred HHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCC
Q 003047 164 KALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSV 242 (854)
Q Consensus 164 ~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (854)
++++.||+++++-..++|.+ -..||..|+.++-+.++|+||+ -|.-|+..+.+....+.
T Consensus 140 ~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal---~f~~kA~~lv~s~~l~d----------------- 199 (518)
T KOG1941|consen 140 KALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKAL---FFPCKAAELVNSYGLKD----------------- 199 (518)
T ss_pred HHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHh---hhhHhHHHHHHhcCcCc-----------------
Confidence 99999999999999998885 6679999999999999999997 57778877753221110
Q ss_pred CCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHH
Q 003047 243 PSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLK 322 (854)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (854)
|+ --++-.
T Consensus 200 -----------------~~-------------------------------------------------------~kyr~~ 207 (518)
T KOG1941|consen 200 -----------------WS-------------------------------------------------------LKYRAM 207 (518)
T ss_pred -----------------hh-------------------------------------------------------HHHHHH
Confidence 00 112222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIAR----GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~----~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
+.+.-+-.+-++|.+.+|.+..+.+.++.. -|-....+.-+|++|-.+|+.+.|+.-|+++... .|.-....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333334455677899999999998887762 1444566678899999999999999999998862 11101223
Q ss_pred HHHHHHHHHHHcCCHHH-----HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 395 FNNNLGCIYYQLAKYHT-----SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~e-----Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
++..++.+.....-..+ |++.-++++++..++...- -....+..++.+|-.+|.-++=-..+.+
T Consensus 288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~----------~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL----------SVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44444444444433444 7777778777744432110 0123455667777666665554444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.7e-05 Score=85.13 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+++...++++.|+.-++++...+ |+ ..+.++.++...++..+|++++.+++. ..|. ....+.-.+.++.+.++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~--pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD--PE---VAVLLARVYLLMNEEVEAIRLLNEALK-ENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC--Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCC
Confidence 34556789999999999999998 76 667789999999999999999999999 6784 47778778999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
++.|+...++|... .|.....|+.|+.+|...|++++|+..++ .+.+.|.
T Consensus 250 ~~lAL~iAk~av~l----------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAVEL----------------SPSEFETWYQLAECYIQLGDFENALLALN-SCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCCCC
Confidence 99999999999998 45567899999999999999999997766 3444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0021 Score=75.24 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=98.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
....+.|.+.++...... |+..-.++..|.++...|+.++|++.|++++.. .-+......+..+|.+|.-+.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 457788999999999999 999999999999999999999999999998861 1233345667789999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHh
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKP-------VLAARCFQKSSLV 472 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~-------eeAl~~y~kAL~l 472 (854)
|..+|.+.++.. + -......|-.|.|+...|+. ++|.+.|.++-.+
T Consensus 324 A~~~f~~L~~~s-----~----------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKES-----K----------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhcc-----c----------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998861 1 12355667889999999999 5555555554433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=90.42 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA---LFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a---~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
..++..+.+|...|++++|+..++++++++ |++..+ ++++|.+|..+|++++|+++|++++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778999999999999999999999999 999965 99999999999999999999999998
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.3e-05 Score=78.61 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+|.++.+...+.+.+|++-++.+.+.. .-....+-+.+-+.++.+++--+-.+.++... + ..+...+|.||+
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--E--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccC--C--Cccchhccchhe
Confidence 44556666667777787887766554432 11223445667788888888888777777543 1 346788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
.++-|+|++|++-|+.|++. ..-.+-+-||++.+.++.|+++.|+++..+++..
T Consensus 154 lykegqyEaAvqkFqaAlqv----------------sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQV----------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred eeccccHHHHHHHHHHHHhh----------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 1223467789999999999999999887766543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0028 Score=62.09 Aligned_cols=206 Identities=20% Similarity=0.102 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCC
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDS 225 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~ 225 (854)
...+...+..+...+++.+++..++..... ..........+..+..+...+++.+++. .+++........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL---ELLPNLAEALLNLGLLLEALGKYEEALE---LLEKALALDPDP---- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHHHhhHHHHHH---HHHHHHcCCCCc----
Confidence 457778899999999999999999888873 1111122356667788888888888874 456554332000
Q ss_pred CCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchh
Q 003047 226 GSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNEL 305 (854)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (854)
T Consensus 129 -------------------------------------------------------------------------------- 128 (291)
T COG0457 129 -------------------------------------------------------------------------------- 128 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccchhHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 306 SRTLVDRSISTVDLKLKLQLYKVR-FLLLTRNLKHAKREVKLAMNIARGK---DSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 306 g~~~~~~~~~~~~~~~~l~l~K~~-lyl~~~~~~~A~~elk~al~~~~~P---~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
.....+... +|...++++.|...+++++... | ......+..+..+...+++++|+..+.
T Consensus 129 ---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 129 ---------------DLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred ---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 001111222 7788999999999999998877 7 456677778888899999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+++. ..+......+.+++..+...+++.+|+.++.+++... +.....++.++..+...+.+++
T Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 192 KALK-LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD----------------PDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHh-hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC----------------cccHHHHhhHHHHHHHcCCHHH
Confidence 9999 4553135678889999999999999999999999982 2234667788888887778999
Q ss_pred HHHHHHHHHHhcCC
Q 003047 462 AARCFQKSSLVFYK 475 (854)
Q Consensus 462 Al~~y~kAL~l~P~ 475 (854)
+...+.+++...|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999998
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=82.94 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
.+-.+|++.++++++ .|.++.++..+|+ ++...++++.|+..|++++ .++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~-----~~~~~~~~~~a~~~f~rA~--~L~---------------------- 368 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGL-----ITGLSGQAKVSHILFEQAK--IHS---------------------- 368 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHhhcchhhHHHHHHHHh--hcC----------------------
Confidence 345788999999998 8889999999988 5568899999999999999 332
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhcCC
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYV-DLMLGK 827 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~-~L~~G~ 827 (854)
|. .+.+|+-.|.++...|+.++|.+++++++++.|....+..+..|+ .+--..
T Consensus 369 ----------------Pn----------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 369 ----------------TD----------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred ----------------Cc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 32 577888899999999999999999999999999998888888888 777889
Q ss_pred HHHHHHHHHh
Q 003047 828 SQEALAKLKY 837 (854)
Q Consensus 828 ~~eA~~~lk~ 837 (854)
.++|+.++-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 9999998854
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.072 Score=62.41 Aligned_cols=314 Identities=14% Similarity=0.073 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-----------cC
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGK---DSSLALFLKSQLEYARRNHRKAIKLLLALSNR-----------TE 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P---~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-----------~d 388 (854)
++.--+++|-..|+++.|..-+++++... .| +-...|..-|...+...+++.|+++.+++... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 55556889999999999999999998876 12 22567788888899999999999999998762 01
Q ss_pred CC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 389 MG-----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 389 p~-----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
|. ....+|.....+--..|=++.--..|++.+.+ + -..+....|.|..+..-.-+++|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL----r------------iaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL----R------------IATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----h------------cCCHHHHHHHHHHHHhhHHHHHHH
Confidence 11 11233444455556667777777777777776 1 113466778888888888899999
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 464 RCFQKSSLVF--YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 464 ~~y~kAL~l~--P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
+.|++-+.++ |+-.++|.--..-.+. +.
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~--ry------------------------------------------------ 561 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIK--RY------------------------------------------------ 561 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHH--Hh------------------------------------------------
Confidence 9999999998 5778888776655552 11
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
+..+++.|+.-|++||..+|.... |
T Consensus 562 -------gg~klEraRdLFEqaL~~Cpp~~a------------------------K------------------------ 586 (835)
T KOG2047|consen 562 -------GGTKLERARDLFEQALDGCPPEHA------------------------K------------------------ 586 (835)
T ss_pred -------cCCCHHHHHHHHHHHHhcCCHHHH------------------------H------------------------
Confidence 012578999999999999995221 0
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAA 701 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~a 701 (854)
.++...|-.--+-|--..|+..++++-..-+ .+...-+=++|..
T Consensus 587 -----------------------------------tiyLlYA~lEEe~GLar~amsiyerat~~v~-~a~~l~myni~I~ 630 (835)
T KOG2047|consen 587 -----------------------------------TIYLLYAKLEEEHGLARHAMSIYERATSAVK-EAQRLDMYNIYIK 630 (835)
T ss_pred -----------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 0111111122233556677788887665433 2344455566654
Q ss_pred HHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 003047 702 EALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLY 781 (854)
Q Consensus 702 eAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~ 781 (854)
.|--..| +..-.+.|++++. .+ | .+ . ...+.
T Consensus 631 kaae~yG-v~~TR~iYekaIe-~L---------------------------------------p-----~~--~-~r~mc 661 (835)
T KOG2047|consen 631 KAAEIYG-VPRTREIYEKAIE-SL---------------------------------------P-----DS--K-AREMC 661 (835)
T ss_pred HHHHHhC-CcccHHHHHHHHH-hC---------------------------------------C-----hH--H-HHHHH
Confidence 4433333 2233445555552 11 1 10 1 34566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCcc
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPRS--TEATLTAIYVDLMLGKSQEALAKLKYCNHVRF 843 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~~~ 843 (854)
...|-+-+..|+.+.|..+|--.-.++|.. +..+..-=-.+++-||-+.-...||-.|.|..
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa 725 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQA 725 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 778888889999999999999988887654 34444444568899996665555554555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.5e-05 Score=78.95 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.|..|.-++..|+|.+|...|..-++. -|+ ..+.+++.||.+++.+|+|+.|...|..+.+..++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 445556667889999999999998883 332 34567777999999999999999999999997331
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
.+.-+++++.+|.++..+|+.++|...|+++++-+|+.+.+-..
T Consensus 211 -s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 211 -SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred -CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 24457899999999999999999999999999999998876443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.005 Score=65.86 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=102.1
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCCC-----------------
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEMG----------------- 390 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp~----------------- 390 (854)
..+.|++++|.+.++.+++.. .-++-.-+.++..+++.++|..|+++...++.+ ..|.
T Consensus 154 lykegqyEaAvqkFqaAlqvs--GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVS--GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhc--CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 335799999999999999998 788888899999999999999999999998873 2222
Q ss_pred -------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 391 -------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 391 -------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
.-..++|-...|+++.|+++.|.+ +|..+|.-. + .+-++-++.|++.. -..+++-+.+
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e----aLtDmPPRa-E---------~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQE----ALTDMPPRA-E---------EELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHH----HhhcCCCcc-c---------ccCCchhhhHHHHh-cccCCccccH
Confidence 112355556778888888877743 444432100 0 12234567777654 3456788889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+-++=.+.+.|--++.+-++...|.
T Consensus 297 ~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHh
Confidence 8899999999966777777776666
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=83.57 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
+....++++.|+++|++..+ .+|. +..-|+.+|..+++..+|+..+.++|.. .+.+.++
T Consensus 178 ~l~~t~~~~~ai~lle~L~~-~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~----------------~p~d~~L 236 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRE-RDPE----VAVLLARVYLLMNEEVEAIRLLNEALKE----------------NPQDSEL 236 (395)
T ss_pred HHhhcccHHHHHHHHHHHHh-cCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCCCHHH
Confidence 33466899999999999998 6773 2334899999999999999999999987 3445788
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMAL 491 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~ 491 (854)
+..-+..++..++++.|+.+.++++.+.|+....|+.|++||+..+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999999999999999533
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=64.85 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
+..|++++|++.+++++..+ |++..+++.+|.+|+..|++++|.+++++++. .+|+ ++.++.-++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-~~~~-~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK-QDPD-NPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-GGTT-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-HHHHHHHHh
Confidence 56899999999999999999 99999999999999999999999999999999 7884 465665444
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=77.79 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|.+.+-|.-||-+|+.+|++..|...|.+|+++.|+++.+|.-+|+++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999988
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=81.87 Aligned_cols=135 Identities=15% Similarity=0.052 Sum_probs=114.4
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccCC
Q 003047 325 LYKVRFLLLTR---NLKHAKREVKLAM---NIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTEM 389 (854)
Q Consensus 325 l~K~~lyl~~~---~~~~A~~elk~al---~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~dp 389 (854)
+.+++-.+.++ ..+.|+..+.+++ .++ |+...++-.+|..++.. ....+|...-.+++. .+|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld--p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-ld~ 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ--TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-ITT 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC--cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-cCC
Confidence 33454444444 4567888999999 999 99999999999888865 345688888889998 788
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
. ++.++..+|.++.-.++++.|+..|++|+.+ +|..+.+||..|......|+.++|+++++++
T Consensus 336 ~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----------------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 336 V-DGKILAIMGLITGLSGQAKVSHILFEQAKIH----------------STDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred C-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc----------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 6889999999999999999999999999999 4567899999999999999999999999999
Q ss_pred HHhcCCCHHH
Q 003047 470 SLVFYKQPLL 479 (854)
Q Consensus 470 L~l~P~~~~a 479 (854)
++++|....+
T Consensus 399 lrLsP~~~~~ 408 (458)
T PRK11906 399 LQLEPRRRKA 408 (458)
T ss_pred hccCchhhHH
Confidence 9999986543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=71.61 Aligned_cols=87 Identities=8% Similarity=-0.136 Sum_probs=77.0
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
.++|++++|..-++-++..+ |.|+++++-+|-++..+++|++|+..|..+.. .++++ +...+.+|.+|..+|+..+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~~~d-p~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LLKND-YRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccCC-CCccchHHHHHHHhCCHHH
Confidence 37899999999999999999 99999999999999999999999999999887 33322 2234459999999999999
Q ss_pred HHHHHHHHHHh
Q 003047 412 SSVFLSKALSN 422 (854)
Q Consensus 412 Ai~~f~kAL~~ 422 (854)
|..+|..++..
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=73.14 Aligned_cols=106 Identities=12% Similarity=-0.060 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMG----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-|+-+|.+|.|.+|..-|..+|. .-|. .....|.|.|.+..++++.+.||.-..||+++
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale-~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------------- 163 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALE-SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------------- 163 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHH-hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------
Confidence 346899999999999999999998 4443 33567888999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.|....++...+.+|..+.+|++|++-|.++++++|..-.+.-..+
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2334567778899999999999999999999999999876554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=60.61 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
.+++.+|.+|...|++++|+++|+++++.+|+++.+|..||.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5788999999999999999999999999999999999999863
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=78.72 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=97.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI 391 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~ 391 (854)
++..|.+.|++..|...|++++..- +.. ...+++++..+..+++|.+|++.++++|. .+| .
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l--~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~-~ 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL--EYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LDP-N 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh--hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cCC-C
Confidence 4668999999999999999988776 311 24678999999999999999999999999 788 4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH-HHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA-ARCFQKSS 470 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA-l~~y~kAL 470 (854)
+..+++..|.+|..+|+|+.|+..|+||+++ .|.+..+-..+..+-.+..++.+. .+.|.+.+
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKL----------------EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999998 233445555555555544444333 34444433
Q ss_pred H
Q 003047 471 L 471 (854)
Q Consensus 471 ~ 471 (854)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 3
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=67.28 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
..|.++-.+|+.++|+.+|++++. ..+. ++. ..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~--~gL~-----------------------------------~~~----------~~ 38 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALA--AGLS-----------------------------------GAD----------RR 38 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--cCCC-----------------------------------chH----------HH
Confidence 345566689999999999999993 1100 011 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPR---STEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~---~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++++||.++...|++++|+..+++++.-.|+ +..+....+.++...|+.++|+..+..
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999999999999999998898 666777778888899999999998865
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=62.07 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=54.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.+|+..+++++|++.+++++.++ |+++..++.+|.+++..|++++|++.|++++. ..|+ .+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-~~p~-~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE-LSPD-DPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH-HCCC-cHHHH
Confidence 57788899999999999999999 99999999999999999999999999999998 6774 34443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00089 Score=73.03 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
..+..+|+.+.-++-++++++.|+++++. .||-..-.++..||..|-+++++++|+.+..||+.+...+.-.+-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-- 200 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-- 200 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch--
Confidence 45567899999999999999999999983 455455568889999999999999999999999999665431110
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc--CCCH----HHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF--YKQP----LLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~--P~~~----~aw~~La~~~i 488 (854)
..--+..++|.++++|-.+|+.-+|.++.+++.++. ..+- +...-+|.+|.
T Consensus 201 ----~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 201 ----SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred ----hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 001245688999999999999999999999998765 3333 33444555555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0035 Score=61.41 Aligned_cols=145 Identities=21% Similarity=0.142 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHhhhccCC--CccHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQ-LEYARRNHRKAIKLLLALSNRTEM--GISSMFNNNLGC 401 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~-ly~~~g~~~kAl~~l~kal~~~dp--~~~a~~~nnLG~ 401 (854)
.....++...+++..+.+.++.++... +++.......+. ++...|++++|+..|.+++. ..| ......+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhh
Confidence 334566677788899999999999998 887666667777 89999999999999999987 565 234566667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+...+++.+|+..+.+++... +. ....+.+++.++...++++.|...+.+++...|.....+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLN----------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhC----------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 8889999999999999999982 22 357788999999999999999999999999999966667
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..++..+.
T Consensus 240 ~~~~~~~~ 247 (291)
T COG0457 240 YNLALLLL 247 (291)
T ss_pred hhHHHHHH
Confidence 77766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0054 Score=64.96 Aligned_cols=181 Identities=15% Similarity=0.033 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
-+..||+.|..-.+.|+|++|++.|+.+.. ..|..+. ..++.+.++-.+...++|+.|+..+++|-+..+-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~-~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~------ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDS-RHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH------ 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC------
Confidence 455999999999999999999999999987 4455554 37789999999999999999998888777766433
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
++. +.. .+.. .+.+... |+..
T Consensus 105 ---------------------~n~------dY~---------~Ylk----gLs~~~~-------i~~~------------ 125 (254)
T COG4105 105 ---------------------PNA------DYA---------YYLK----GLSYFFQ-------IDDV------------ 125 (254)
T ss_pred ---------------------CCh------hHH---------HHHH----HHHHhcc-------CCcc------------
Confidence 111 111 0100 0000000 0000
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH-----------------HHHHHHHH
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA-----------------LFLKSQLE 367 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a-----------------~~lla~ly 367 (854)
++ -+.-..+|+..++.++... |+..-+ =...|..|
T Consensus 126 ------~r--------------------Dq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 126 ------TR--------------------DQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred ------cc--------------------CHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0122356888999999999 977321 14579999
Q ss_pred HHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 368 YARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 368 ~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..+|.+--|+.-++.+++. -|+ ....++..|...|..+|-.++|.. ..+.|..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHh
Confidence 9999999999999999983 221 345677779999999999999965 4566664
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=70.25 Aligned_cols=62 Identities=16% Similarity=0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-----------PVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-----------~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+.-|++||.+ .|....+++++|++|...+. |++|.+||++|...+|++.
T Consensus 51 iedAisK~eeAL~I----------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 51 IEDAISKFEEALKI----------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHhc----------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 46777888888887 45668999999999997765 7889999999999999999
Q ss_pred HHHHHHHHH
Q 003047 478 LLWLRLAEC 486 (854)
Q Consensus 478 ~aw~~La~~ 486 (854)
..+..|-.+
T Consensus 115 ~Y~ksLe~~ 123 (186)
T PF06552_consen 115 LYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777644
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.11 Score=63.16 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=104.8
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+..+++++|+....+++..+ |+-..+..++|.++.+.|+.++|..+++..-. ..+ +....+--+-.+|..+|++++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhH
Confidence 35689999999999999999 99999999999999999999999987776554 333 345566678899999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|..+|+++++. +|..+.++.+=.+|.+-+.|.+--+.=.+.-+..|+++..
T Consensus 96 ~~~~Ye~~~~~-----------------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 96 AVHLYERANQK-----------------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHhh-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 99999999997 2347788888899999998877555544555578888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=65.41 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=94.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLE--LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~--~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
.+.||..+.++|++.+|..+|.+++. ..+++..+.-+ |.|.+..+++.+|...|+.... .+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLgl-----A~Aqfa~~~~A~a~~tLe~l~e--~~p--------- 155 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGL-----AQAQFAIQEFAAAQQTLEDLME--YNP--------- 155 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHH-----HHHHHhhccHHHHHHHHHHHhh--cCC---------
Confidence 45789999999999999999999997 44555555444 4589999999999999998883 210
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
+.+ +| ..+.-+|.++..+|.+++|+..|+.+++.-|+.. +..
T Consensus 156 --------------------a~r----~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~ 197 (251)
T COG4700 156 --------------------AFR----SP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARI 197 (251)
T ss_pred --------------------ccC----CC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHH
Confidence 000 12 2234589999999999999999999999887763 444
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 003047 817 TAIYVDLMLGKSQEALAKLK 836 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk 836 (854)
..+-.+.++|+.++|..-+.
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 45555679999998876553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=52.92 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+.+|+++|.+|+.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3689999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.42 Score=57.58 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVL 208 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l 208 (854)
..|++-..+|..++|..+|.+--+ +-+|-.+|...|+.++|.++-
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHHHHHHH
Confidence 568888899999999999965433 344567888899999998654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0068 Score=64.20 Aligned_cols=142 Identities=14% Similarity=0.056 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...-+-+|+.-+++++|.+.+.....+ ++..+.-+++.+..+.+-|.+.+++... .+. ...+..|+..+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~VqI~lk~~r~d~A~~~lk~mq~-ide---d~tLtQLA~aw 179 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENL-------EAAALNVQILLKMHRFDLAEKELKKMQQ-IDE---DATLTQLAQAW 179 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cch---HHHHHHHHHHH
Confidence 334566788888888888887764444 4777778888888888888888888877 443 24556566555
Q ss_pred HH----cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 404 YQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 404 ~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+ .+++..|..+|+..=.- .++.+.++...+.|.+.+|+|++|...++.+|.-++++|..
T Consensus 180 v~la~ggek~qdAfyifeE~s~k----------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEK----------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcc----------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 43 23566666666664332 34567788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003047 480 WLRLAECCLMALE 492 (854)
Q Consensus 480 w~~La~~~i~~~~ 492 (854)
..++.-|....++
T Consensus 244 L~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 244 LANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHhCC
Confidence 9999988775333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.24 Score=56.40 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQ--LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~--ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
++++.-++.-+.+.++..|.+.+..++... |.+-- .+|. +..+.++++.+-++|++.+. -.| .+..+|...
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~Kl---Fk~YIelElqL~efDRcRkLYEkfle-~~P-e~c~~W~ky 477 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKL---FKGYIELELQLREFDRCRKLYEKFLE-FSP-ENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhH---HHHHHHHHHHHhhHHHHHHHHHHHHh-cCh-HhhHHHHHH
Confidence 477777999999999999999999999999 87643 3343 45689999999999999999 688 467899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+-..+|+.+.|-..|.-|+.. |.+ +....+|-.--..-...|.++.|...|++.|+..+..+ +
T Consensus 478 aElE~~LgdtdRaRaifelAi~q-p~l-------------dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v 542 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQ-PAL-------------DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V 542 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcC-ccc-------------ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence 99999999999999999999886 000 11123333334445567889999999999999998877 9
Q ss_pred HHHHHHHHH
Q 003047 480 WLRLAECCL 488 (854)
Q Consensus 480 w~~La~~~i 488 (854)
|...|..-.
T Consensus 543 WisFA~fe~ 551 (677)
T KOG1915|consen 543 WISFAKFEA 551 (677)
T ss_pred HHhHHHHhc
Confidence 999997655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00066 Score=69.57 Aligned_cols=111 Identities=18% Similarity=0.084 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-+|..|.+|...|-..-|---|.+++. ..|. -+.++|-||.++...|+++.|.+.|.-.++++
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLa-i~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------------- 129 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALA-IRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------- 129 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhh-cCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC--------------
Confidence 3457788999999988888888999998 7894 68899999999999999999999999999984
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH--HHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL--LWLRLAEC 486 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~--aw~~La~~ 486 (854)
|....+..|.|..++--|+|.-|.+-|.+--+-+|++|. .|+.|-+.
T Consensus 130 --p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 130 --PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred --CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 334578889999999999999999999999999999985 58877753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=69.21 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCcc
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGIS 392 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~ 392 (854)
.|..++.++ +.|++..|...+..-++.. |+. +.++|-+|..++.+|+|+.|..+|..+.+. ..| ..
T Consensus 144 ~Y~~A~~~~------ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KA 214 (262)
T COG1729 144 LYNAALDLY------KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KA 214 (262)
T ss_pred HHHHHHHHH------HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CC
Confidence 455555444 7899999999999999999 987 579999999999999999999999999983 233 45
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
++.++.||.+..++|+.++|...|+++++..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999999999973
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00035 Score=50.24 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|+.+|.+++.+|++++|+++|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00037 Score=72.29 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
..|+-++...+|..|+.+|.+++. ..| .++.+|-|.+.+|+++++++....-.++|+++++ .
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~-~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~----------------N 76 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAIC-INP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP----------------N 76 (284)
T ss_pred hccccccchhhhchHHHHHHHHHh-cCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh----------------H
Confidence 356778888999999999999999 788 5678899999999999999999999999999943 3
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-----PLLWLRLAEC 486 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-----~~aw~~La~~ 486 (854)
....+|-+|.+++....|++|+.+++++..+.... ..+|..|-.+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 45788899999999999999999999997766433 3456665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.024 Score=71.09 Aligned_cols=210 Identities=13% Similarity=0.085 Sum_probs=148.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|..+..|.+.=.-...+++.++|-++.|+++..+...++..-..+|..++++-..-|. ...+..-||++-...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHHHHHHHHHHHHhc---
Confidence 67788899999888999999999999999999977555444333344444444444442 223345667665432
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
+ .
T Consensus 1528 --d-------------------------------~--------------------------------------------- 1529 (1710)
T KOG1070|consen 1528 --D-------------------------------A--------------------------------------------- 1529 (1710)
T ss_pred --c-------------------------------h---------------------------------------------
Confidence 0 0
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
+ ..+..-..+|....++++|.+-++..++.+ -+....|.+.|..++.+++-++|-.++.
T Consensus 1530 -----------------~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1530 -----------------Y--TVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred -----------------H--HHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 0 022223567777788888888888888888 6777888888888888888888888888
Q ss_pred HhhhccCCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 382 ALSNRTEMG-ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 382 kal~~~dp~-~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
+++. .-|. ....+.--.+..-++.|+.+.+-..|+-.|.. .|.+..+|.-....-+..|..+
T Consensus 1589 rAL~-~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a----------------yPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1589 RALK-SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA----------------YPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred HHHh-hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh----------------CccchhHHHHHHHHHHccCCHH
Confidence 8887 4442 23455555677778888888888888887776 4556677776677777777788
Q ss_pred HHHHHHHHHHHhc
Q 003047 461 LAARCFQKSSLVF 473 (854)
Q Consensus 461 eAl~~y~kAL~l~ 473 (854)
.+...|++++.+.
T Consensus 1652 ~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1652 YVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.039 Score=58.57 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=133.3
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
+..++..+++-|....+.|++++|+.+|++.....+- .+-...++..++-++++.++|++|+...++
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr 96 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDR 96 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3345788899999999999999999999998765210 122357888999999999999999999999
Q ss_pred HHHhcCCCHHH---HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCC
Q 003047 469 SSLVFYKQPLL---WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGS 545 (854)
Q Consensus 469 AL~l~P~~~~a---w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~ 545 (854)
.+.++|.++.+ .+-.|.+.. .. - .. .-.+
T Consensus 97 Fi~lyP~~~n~dY~~YlkgLs~~---~~----i-------------------------~~-----~~rD----------- 128 (254)
T COG4105 97 FIRLYPTHPNADYAYYLKGLSYF---FQ----I-------------------------DD-----VTRD----------- 128 (254)
T ss_pred HHHhCCCCCChhHHHHHHHHHHh---cc----C-------------------------Cc-----cccC-----------
Confidence 99999998764 555565544 11 0 00 0001
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcc
Q 003047 546 DGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAK 625 (854)
Q Consensus 546 ~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~ 625 (854)
......|...|+.-+.-.|+-.-+. |.+
T Consensus 129 ----q~~~~~A~~~f~~~i~ryPnS~Ya~------------------------------------------------dA~ 156 (254)
T COG4105 129 ----QSAARAAFAAFKELVQRYPNSRYAP------------------------------------------------DAK 156 (254)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCcchh------------------------------------------------hHH
Confidence 0123668888888888888744210 000
Q ss_pred cccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHH
Q 003047 626 DQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEAL 704 (854)
Q Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl 704 (854)
. .+..+. +..... =+..|..|++.|.|..|+..++++++ .|+.+.+.-.|. ++.||+
T Consensus 157 ~----~i~~~~------------d~LA~~----Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~--~l~eaY 214 (254)
T COG4105 157 A----RIVKLN------------DALAGH----EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALA--RLEEAY 214 (254)
T ss_pred H----HHHHHH------------HHHHHH----HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHH--HHHHHH
Confidence 0 001110 000111 12447789999999999999999998 555655555554 456688
Q ss_pred HhcCCHHHHHHHHHhhh
Q 003047 705 CLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 705 ~~lgr~~eAl~~l~~~l 721 (854)
..+|-.++|-..-.-.-
T Consensus 215 ~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 215 YALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhCChHHHHHHHHHHH
Confidence 99999999877655443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=65.82 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 317 VDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 317 ~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
.+-+..+++.|+-+|-..|-..-|.-.+..++.+. |+-+++...+|..+...|+|+.|.+.|+.+++ .||. ...++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E-LDp~-y~Ya~ 136 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDPT-YNYAH 136 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhc-cCCc-chHHH
Confidence 44566789999999999999999999999999999 99999999999999999999999999999999 8995 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchh--------------cc-------------cCC----c----------cc--
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSAS--------------LR-------------KDK----P----------LK-- 433 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~--------------l~-------------~~~----~----------l~-- 433 (854)
.|.|..++--|+|..|..-|.+--+.+++ +. .-+ + +.
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e 216 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE 216 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH
Confidence 89999999999999999999888776432 00 000 0 00
Q ss_pred -----cccccCC------ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 003047 434 -----LLTFSQD------KSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY-KQPLLWLRLAE 485 (854)
Q Consensus 434 -----~~~~~~~------~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P-~~~~aw~~La~ 485 (854)
......+ .-.+++|.+|..++..|+.++|...|+-++.-.- +..+..+.+-+
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~E 280 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLE 280 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0111111 1256889999999999999999999998887553 33333444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00039 Score=50.25 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|.+|+++|.++..+|++++|+.++++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0089 Score=60.76 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=95.2
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCC
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLAL---FLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~---~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+.+.. +...++.+.+..+ |....+. +.+|..+...+++++|+..++.++.. .|......+-.+|+.+..++|+
T Consensus 65 ~ak~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k 141 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK 141 (207)
T ss_pred hcCCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh
Confidence 34444 7888888888888 7776554 57899999999999999999999962 2333345566678999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+..+...-.. .-......-.|.+++..|+.++|+..|.+++..+++.+
T Consensus 142 ~D~AL~~L~t~~~~-----------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 142 ADAALKTLDTIKEE-----------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhccccc-----------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998876653221 01123344679999999999999999999999986554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.11 Score=65.60 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=163.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC------ccHHHHHHHHHHHHHcCCHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG------ISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~------~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
-.+++.+++... |+.+-.|..-=..+.+.++.++|-++.+++|+..++. +.-.+|.||=..| |.-+.-.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 457888899999 9999999887788889999999999999999853322 1122333343333 5667778
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEK 493 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~ 493 (854)
+.|++|-+.+ + ...++..|..+|...+++++|.+.|+..++-+.+...+|...|..++ ++
T Consensus 1518 kVFeRAcqyc----------------d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl---~~ 1577 (1710)
T KOG1070|consen 1518 KVFERACQYC----------------D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL---RQ 1577 (1710)
T ss_pred HHHHHHHHhc----------------c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh---cc
Confidence 8888888872 2 24677889999999999999999999999999999999999999888 32
Q ss_pred cccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccc
Q 003047 494 GLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLN 573 (854)
Q Consensus 494 ~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~ 573 (854)
. + -+.|+.-+.+||.-.|....
T Consensus 1578 n--e-------------------------------------------------------~~aa~~lL~rAL~~lPk~eH- 1599 (1710)
T KOG1070|consen 1578 N--E-------------------------------------------------------AEAARELLKRALKSLPKQEH- 1599 (1710)
T ss_pred c--H-------------------------------------------------------HHHHHHHHHHHHhhcchhhh-
Confidence 0 0 14589999999999999321
Q ss_pred ccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHH
Q 003047 574 YSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQM 653 (854)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 653 (854)
-+++
T Consensus 1600 -----------------------------------------------------------v~~I----------------- 1603 (1710)
T KOG1070|consen 1600 -----------------------------------------------------------VEFI----------------- 1603 (1710)
T ss_pred -----------------------------------------------------------HHHH-----------------
Confidence 0111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 654 IKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 654 l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
...|-.-++.||+..+...+..+|. .|.-.+.|.-+.. .-+..|..+.+...|+|.+
T Consensus 1604 ------skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid-----~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1604 ------SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID-----MEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred ------HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH-----HHHccCCHHHHHHHHHHHH
Confidence 1224457789999999999999886 8888888865554 3457899999999999999
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00083 Score=51.85 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAI 819 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~ 819 (854)
.+++.||.+|..+|++++|+++|+++++..|+++.++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46788999999999999999999999999999998887665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00091 Score=67.77 Aligned_cols=101 Identities=23% Similarity=0.153 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
-++..|.+++|..-|..++. . +|..++.-+.++|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~-------------------------------------------cp~~~~e~rsIly~ 138 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--S-------------------------------------------CPSTSTEERSILYS 138 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--h-------------------------------------------CccccHHHHHHHHh
Confidence 35567999999999999993 1 12223344899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCccccccccc
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRFLPSGLQL 850 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~~~~~~~~~~ 850 (854)
|-|.++..++.++.|+.-..+|+++.|.+..++.-++..+-++.++++|+.-+++.. ..+|...+.
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~--E~dPs~~ea 204 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKIL--ESDPSRREA 204 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCcchHHH
Confidence 999999999999999999999999999999999999999999999999999999955 556655443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.011 Score=56.24 Aligned_cols=103 Identities=17% Similarity=0.015 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
++|...-.-|+.+.|++.|.+++. .-| ..+.+|||.+..|.-+|+.++|+.-+.+||++.. .. .-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~-l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag----~~--------trt 113 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALC-LAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAG----DQ--------TRT 113 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH-hcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----cc--------chH
Confidence 445666677888888888888888 667 3677888888888888888888888888888721 00 001
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
...++-..|..|-..|+-+.|..-|..+-++-..+++
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 2346667788888888888888888888877665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0047 Score=58.78 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=82.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYY 404 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~ 404 (854)
++-..-..|+++.|++.+.+++.+. |..+.+|.+.++.+-.+|+.++|++-+++++....|. ....+|...|.+|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3555667899999999999999999 9999999999999999999999999999999852232 23456778899999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 003047 405 QLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~ 422 (854)
.+|+.+.|-.-|+.|-++
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 999999999999999887
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0081 Score=58.47 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNN 398 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nn 398 (854)
.+.+++-.+..|++++|++.++.+.... |-. ..+.+.++..|+..++|++|+..+++.++ .+|. ..+.+++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-LhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-LHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCCCccHHHHH
Confidence 3446778889999999999999999999 755 56789999999999999999999999999 4443 45788888
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhc
Q 003047 399 LGCIYYQLAK---------------YHTSSVFLSKALSNS 423 (854)
Q Consensus 399 LG~iy~~~g~---------------~~eAi~~f~kAL~~~ 423 (854)
.|.++..+.. ..+|...|++.+...
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 9999999877 778888888877763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=47.44 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
|..++.+|.++..+|++++|+++++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.092 Score=62.83 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=65.8
Q ss_pred HHHHhcCHHHHHHHHHH-----hh----hccCCCccHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHhchh--ccc
Q 003047 366 LEYARRNHRKAIKLLLA-----LS----NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFL------SKALSNSAS--LRK 428 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~k-----al----~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f------~kAL~~~~~--l~~ 428 (854)
+|..-|.+.+|++.--+ +| +..+|+..+..++.-+..+....+|++|.+.+ +.||+++.. ++-
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 45566777777664322 11 11456556778888899999999999998765 455555321 100
Q ss_pred -------CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 429 -------DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 429 -------~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
-.+.+...++...+-.++-.+|.+.+++|.|-.|.+-|.+|
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 00111111222335678889999999999999999988875
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.99 Score=51.79 Aligned_cols=136 Identities=16% Similarity=0.059 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----CCC--ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 654 IKQALLANLAYVELEMENPVKALAAARSLLE----LPD--CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 654 l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~----~p~--~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
++...|-+++.+-+-.|++++|+.....+.. .|. .-..+...-|...+-=++..|-+++|..++..+++ .+.
T Consensus 321 ~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~- 398 (629)
T KOG2300|consen 321 FKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATK-LTE- 398 (629)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhh-
Confidence 3444566677778889999999999988774 344 33333333444444456788999999999999994 111
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
+ . +-.+....|||.+|...|+-+.-.+.++..
T Consensus 399 ---------------~----------------------~--------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i--- 430 (629)
T KOG2300|consen 399 ---------------S----------------------I--------DLQAFCNLNLAISYLRIGDAEDLYKALDLI--- 430 (629)
T ss_pred ---------------H----------------------H--------HHHHHHHHhHHHHHHHhccHHHHHHHHHhc---
Confidence 0 0 115778899999999998877655554443
Q ss_pred CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 808 LPRS----------TEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 808 ~P~~----------~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
.|.+ +-+.+..+.....++++.||...+++.-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3442 3466667777788999999999998743
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.036 Score=55.98 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
=+.+...+|..+.+++. |... -.+.+|+.....|++.||...|++++. .--...+..+..++...+..+++.+|..
T Consensus 70 ldP~R~~Rea~~~~~~A--pTvq-nr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 70 LDPERHLREATEELAIA--PTVQ-NRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred cChhHHHHHHHHHHhhc--hhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 35566777777777777 6543 457889999999999999999999998 3212335677788999999999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+++.++-.+..+ .+..+.-+|.+|...|++++|...|+.++..+|+. .+..+-++.+.
T Consensus 146 tLe~l~e~~pa~r--------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La 204 (251)
T COG4700 146 TLEDLMEYNPAFR--------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA 204 (251)
T ss_pred HHHHHhhcCCccC--------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 9999888733222 12233345999999999999999999999999984 34444455544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=61.67 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNL 399 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnL 399 (854)
+.-.++++-.|.+.-....++++++.+ |.. +.-.--+|.+-++.|+.+-|..+++++-+. .+-...-.++.|+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344677777888888888889999988 655 444567999999999999999999976652 1222456788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+.+|.-.++|..|...|.+.+.. .+.++.+..|.+.|++.+|+..+|++..+.++++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~----------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM----------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhcccc----------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999887 345677888999999999999999999999999999864
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=59.63 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++.|.+.++.....+ |.+++.++.-|..+..+.+ +++|+.-|+.+|. .+|+ ...++.++|.+|..+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~-~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPN-KHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCc-hHHHHHHHHHHHHHH
Confidence 367888889999999 9999999988888776644 4566777777777 7995 577888999999876
Q ss_pred CC-----------HHHHHHHHHHHHHh
Q 003047 407 AK-----------YHTSSVFLSKALSN 422 (854)
Q Consensus 407 g~-----------~~eAi~~f~kAL~~ 422 (854)
+. |++|..||++|...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 55 44555555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0023 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999964
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=47.31 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 003047 344 VKLAMNIARGKDSSLALFLKSQLEYARRNHRKAI 377 (854)
Q Consensus 344 lk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl 377 (854)
++++|+++ |+|+.+++.+|.+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 46677777 777777777777777777777775
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.36 Score=55.20 Aligned_cols=122 Identities=13% Similarity=-0.008 Sum_probs=80.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HHhcCHHHHHHHHHHhhh------c------------
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLE-----YARRNHRKAIKLLLALSN------R------------ 386 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly-----~~~g~~~kAl~~l~kal~------~------------ 386 (854)
+-+..|+.-.|+....+++.. |+-..++-.+|.+| +...+..+|...+.--+- .
T Consensus 518 V~L~Lgd~i~AL~~a~kLLq~---~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~ 594 (696)
T KOG2471|consen 518 VELELGDPIKALSAATKLLQL---ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWK 594 (696)
T ss_pred HHHHhcChhhHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhc
Confidence 456778888899888888887 67777777777665 567888888888766221 0
Q ss_pred ----cCCC--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 387 ----TEMG--------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 387 ----~dp~--------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
.+|. -...++.|||..|.-+|++++|..++..|..+...+- + .++..-
T Consensus 595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v------------~--~~A~~l 660 (696)
T KOG2471|consen 595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV------------N--VQATVL 660 (696)
T ss_pred cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc------------c--HHHHHH
Confidence 0111 1134567899999999999999999999888743221 1 122221
Q ss_pred HHHHHHHCCCcHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~k 468 (854)
.--.=+++|+...|+..+++
T Consensus 661 avyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 661 AVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred HHHHHHhcCCCcchHHHHHh
Confidence 22234567777777776655
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0021 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003047 800 FVTQALSILPRSTEATLTAIYVDLMLGKSQEALA 833 (854)
Q Consensus 800 ~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~ 833 (854)
+|++|++++|+++.++..++.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5789999999999999999999999999999863
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0025 Score=72.38 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=99.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCcc
Q 003047 363 KSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS 442 (854)
Q Consensus 363 la~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~ 442 (854)
.++-.+.-+.|+.|+..|.+++. .+|+ .+.++-+.+..|.+.+.+..|+.-+.+|++.. +..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~-ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----------------P~~ 71 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE-LDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD----------------PTY 71 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh-cCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC----------------chh
Confidence 45556677899999999999999 7994 67788888999999999999999999999983 345
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKG 494 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~ 494 (854)
..+|+..|.+.+..+++.+|+..|++...+.|+.+.+.-.+.+|-...-+.+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 6788889999999999999999999999999999999999999877544533
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0062 Score=66.16 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
--|+-|+...+|+.|+.+|.+.|+. .+|+.++..|+|.+.+.+-.|+|..|+.-..+|+.. .
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----------------~ 149 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----------------K 149 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----------------C
Confidence 4589999999999999999999885 677788889999999999999999999999999998 3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
|.+..+++.-+.|++.+.++.+|...++..+.++-+.-
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 45567888889999999999999888888887776643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=60.33 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc-C-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchh
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLE-L-PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGED 735 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~-~-p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~ 735 (854)
.-++++.+++.+|+|...++.+++++. . |..|.....|+++.+ +.|+.+.|..++++.-+ ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-----Q~GD~k~a~~yf~~vek-~~~--------- 243 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-----QIGDIKTAEKYFQDVEK-VTQ--------- 243 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-----hcccHHHHHHHHHHHHH-HHh---------
Confidence 345678899999999999999999997 4 457778888888655 78999999999986542 110
Q ss_pred hhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003047 736 CEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEAT 815 (854)
Q Consensus 736 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~ 815 (854)
.+.+ + ...-.++-|.+.+|..++++..|...+.+++..+|.++.+.
T Consensus 244 ---kL~~----------~---------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 244 ---KLDG----------L---------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ---hhhc----------c---------------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 0000 0 11467788999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-cCCCccc
Q 003047 816 LTAIYVDLMLGKSQEALAKLKY-CNHVRFL 844 (854)
Q Consensus 816 ~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~ 844 (854)
.+.+.|++-.|+...|+..+.+ .+.+|..
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999998 5555543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=64.07 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=78.1
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
.+|+..+.-|--=|.-|++-++|..|+.+|.+.|+. ...+ .+-.+.+|.|.+.|.+..|+|..|+.-+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~----kc~D--------~dlnavLY~NRAAa~~~l~NyRs~l~Dc 142 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK----KCAD--------PDLNAVLYTNRAAAQLYLGNYRSALNDC 142 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh----cCCC--------ccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456544444444599999999999999999999997 2111 1235678889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 467 QKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+++.++|.+..+++|=|.|.+.+.+
T Consensus 143 s~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 143 SAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 99999999999999999999997665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.12 Score=59.39 Aligned_cols=136 Identities=16% Similarity=0.068 Sum_probs=97.3
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-------cc---CC-----------Cc
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN-------RT---EM-----------GI 391 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~-------~~---dp-----------~~ 391 (854)
...+..+.++..+++++++ |+-+++++++|.=. -....+|.++|+++++ .. +. +.
T Consensus 180 RERnp~aRIkaA~eALei~--pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN--PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh--hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 4578888999999999999 99999999988521 1224455555555443 10 00 01
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 392 --SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 392 --~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
...+-..++.+..++|+.++|++.|+..++..+. .....+.+||-.+|+..+.|.++-..+.+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--------------~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--------------LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--------------cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1334456899999999999999999999987331 123468899999999999999999988887
Q ss_pred HHh-cCCCHHHHHHHHHH
Q 003047 470 SLV-FYKQPLLWLRLAEC 486 (854)
Q Consensus 470 L~l-~P~~~~aw~~La~~ 486 (854)
=++ .|+.+...+.-|..
T Consensus 322 dDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 322 DDISLPKSATICYTAALL 339 (539)
T ss_pred ccccCCchHHHHHHHHHH
Confidence 554 36666665555543
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.3 Score=48.26 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccCC---C----chh--hHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003047 146 SVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIEP---I----DET--TALQICLLLLDVALACHDAFRSADVLIYLE 212 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~~---~----~e~--~~~~~~l~l~~vy~~~~~~~kA~~~l~~le 212 (854)
+..+||.|.-.+..+ +|+.|+..+++++.+++. . .+. +-..++.+++.+|+..+.++......+.++
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 446677777777777 888888888877776422 1 111 455677778899999998875544333333
|
It is also involved in sporulation []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=61.87 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=85.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
+..-|..-+.++.|+.++-+++.++ |..+.|+.+.+..|++..+++.+..-..+++. .+|+ ....++-+|......
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq-l~~N-~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-LDPN-LVKAHYFLGQWLLQS 91 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-cChH-HHHHHHHHHHHHHhh
Confidence 3445556688999999999999999 99999999999999999999999999999999 7884 678899999999999
Q ss_pred CCHHHHHHHHHHHHHhch
Q 003047 407 AKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~ 424 (854)
+.|++||..+.+|..+.+
T Consensus 92 ~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 999999999999988743
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.052 Score=56.94 Aligned_cols=112 Identities=11% Similarity=-0.072 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCC---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMG---------ISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~---------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
.+.+...|+-++..|+|++|...|..++.. ..|. .....+.|+..|+...|+|-++++....+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 357788999999999999999999998751 2232 123467789999999999999999999999
Q ss_pred HhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 421 SNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 421 ~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.. .+.+..++|..|.+....=+..+|..-|.++|+++|.-..+-.+-.
T Consensus 258 ~~----------------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 258 RH----------------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred hc----------------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 97 4566789999999999999999999999999999999876644433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.1 Score=59.98 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=102.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 18 EDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 18 ~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
+.|.+ ..++.+.++|- +..+.++.++.=+++|+++|+++.++--|+- = .. .-..++...++++++.-
T Consensus 164 d~D~~--r~Aq~IMq~AW---RERnp~aRIkaA~eALei~pdCAdAYILLAE--E---eA---~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 164 DTDAL--RPAQEIMQKAW---RERNPQARIKAAKEALEINPDCADAYILLAE--E---EA---STIVEAEELLRQAVKAG 230 (539)
T ss_pred CCCcc--CHHHHHHHHHH---hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--c---cc---cCHHHHHHHHHHHHHHH
Confidence 44444 46777777665 7899999999999999999999999876662 1 11 22233555555555321
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 98 ARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
.+++|.....+..|..- .....-+----......+|.+..++|+..+|++.++.+++..+
T Consensus 231 ----------E~~lg~s~~~~~~g~~~----------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 231 ----------EASLGKSQFLQHHGHFW----------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred ----------HHhhchhhhhhcccchh----------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 11122111111111100 0000000000234556789999999999999999999999665
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
..+. ..|..+|++.++..+.|.++..+|.+|+.
T Consensus 291 ~~~~---l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 291 NLDN---LNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ccch---hhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3333 34788999999999999999999888873
|
The molecular function of this protein is uncertain. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.48 Score=57.76 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=82.4
Q ss_pred HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 369 ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
..+++++|+.-+.++++ ..|+ ...+..--|.++.++|+.++|..+++ ++... ...+..++--
T Consensus 21 d~~qfkkal~~~~kllk-k~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~---------------~~~D~~tLq~ 82 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK-KHPN-ALYAKVLKALSLFRLGKGDEALKLLE-ALYGL---------------KGTDDLTLQF 82 (932)
T ss_pred hhHHHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHhcCchhHHHHHh-hhccC---------------CCCchHHHHH
Confidence 45899999999999999 6884 45566657999999999999995443 44431 1124567777
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+-.||-.++++++|+.+|++++..+|+ ....+.+=.|++.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 899999999999999999999999999 8888888888873
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.24 Score=52.20 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=84.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cCC-CccHHHHHHHHHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---TEM-GISSMFNNNLGCIYY 404 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~dp-~~~a~~~nnLG~iy~ 404 (854)
.+|...|..+.|--.++++-.. ...-++++|+.+|++++.. .+. ......+-..+.++-
T Consensus 99 ~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 4566677765555554444333 3557888999999998873 111 111234445688899
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc----CCCHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF----YKQPLLW 480 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~----P~~~~aw 480 (854)
+..++++|-..|.|-......... .+.....+...-++|+...+|..|..||+...++. |++.+..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~----------y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDA----------YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhh----------cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 999999999988885554221110 11223344444566777779999999999987764 5556677
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
.+|...|-
T Consensus 232 enLL~ayd 239 (308)
T KOG1585|consen 232 ENLLTAYD 239 (308)
T ss_pred HHHHHHhc
Confidence 77776554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0071 Score=44.61 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+|++||.+|.++|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999998876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.24 E-value=3.2 Score=47.70 Aligned_cols=277 Identities=11% Similarity=0.022 Sum_probs=170.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccC
Q 003047 38 FQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGL 117 (854)
Q Consensus 38 ~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (854)
-..++++.|-.+|..+|+.+..+...|-.-+-+++-... .+ .+-+-..+++.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~---vN---hARNv~dRAvt---------------------- 135 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ---VN---HARNVWDRAVT---------------------- 135 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh---Hh---HHHHHHHHHHH----------------------
Confidence 456889999999999999998888888777755442111 11 12222334442
Q ss_pred CCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 003047 118 GSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA 197 (854)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~ 197 (854)
.+-.+++ +||..-.+=-.+|+..-|-.+||+=+. .+|-.. +.+..++.=+.
T Consensus 136 ---------------------~lPRVdq--lWyKY~ymEE~LgNi~gaRqiferW~~-w~P~eq-----aW~sfI~fElR 186 (677)
T KOG1915|consen 136 ---------------------ILPRVDQ--LWYKYIYMEEMLGNIAGARQIFERWME-WEPDEQ-----AWLSFIKFELR 186 (677)
T ss_pred ---------------------hcchHHH--HHHHHHHHHHHhcccHHHHHHHHHHHc-CCCcHH-----HHHHHHHHHHH
Confidence 1213444 899888888899999999999999998 444333 46667777788
Q ss_pred ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 003047 198 CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLE 277 (854)
Q Consensus 198 ~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (854)
.++.+.|-.||.+|- -.. + + .
T Consensus 187 ykeieraR~IYerfV---~~H--P--~--------------------------------v-------------------- 207 (677)
T KOG1915|consen 187 YKEIERARSIYERFV---LVH--P--K--------------------------------V-------------------- 207 (677)
T ss_pred hhHHHHHHHHHHHHh---eec--c--c--------------------------------H--------------------
Confidence 889999987764443 221 1 0 0
Q ss_pred hhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH
Q 003047 278 DDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS 357 (854)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~ 357 (854)
+ -.+.-+++-...|+..-|..-+.++++.. .++.
T Consensus 208 --------------~------------------------------~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~ 241 (677)
T KOG1915|consen 208 --------------S------------------------------NWIKYARFEEKHGNVALARSVYERAIEFL--GDDE 241 (677)
T ss_pred --------------H------------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHH
Confidence 0 01112445556777777888888888777 5543
Q ss_pred HH-H--HHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHH-HHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCC
Q 003047 358 LA-L--FLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNN-NLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 358 ~a-~--~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~n-nLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~ 430 (854)
.+ . +..|...-.+..++.|--+|+-++. .-|...+.-++ ..-..-.+-|+. +.+|.. ++=++-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~-KRk~qY-------- 311 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG-KRKFQY-------- 311 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-hhhhHH--------
Confidence 32 2 3445666678889999999999988 44543333332 122222233442 222221 111111
Q ss_pred ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH--HHHHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP--LLWLRLAECCL 488 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~--~aw~~La~~~i 488 (854)
+.....+|-+..+|+..-......|+.+.-.+.|++|+.--|--. ..|-+-.-.++
T Consensus 312 --E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 312 --EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred --HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 000011345678898877778888999999999999998776542 34555544444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.16 Score=49.40 Aligned_cols=118 Identities=22% Similarity=0.196 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCch-hhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 003047 692 YIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGE-DCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMF 770 (854)
Q Consensus 692 ~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p 770 (854)
..|...+-.+......++.++++..+..++.- =-. .|-.+ ....|......-.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~l--y~G-~~l~~~~~~~W~~~~r~~l----------------------- 57 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALAL--YRG-DFLPDLDDEEWVEPERERL----------------------- 57 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT----S-STTGGGTTSTTHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hCC-CCCCCCCccHHHHHHHHHH-----------------------
Confidence 33444444555666788999999999999931 000 01111 1123332221111
Q ss_pred CCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 771 PKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 771 ~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
......+...++..+...|++++|...+++++.++|-+-.++..++.++...|+..+|+.++++.
T Consensus 58 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 58 ---RELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 11244556668888888999999999999999999999999999999999999999999999873
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0084 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
.+|+.+|.+|..+|++++|.++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568999999999999999999999999999863
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.091 Score=51.04 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC------C--------------CHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK------D--------------SSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P------~--------------~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+..+......++.+.+++.+++++.+.+|| . ...++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334555667789999999999999999753 1 12344567888999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
. .+| .+..++..+-.+|..+|++.+|+..|++.-..+.
T Consensus 90 ~-~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 90 A-LDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp H-HST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred h-cCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9 799 4677888899999999999999999999888743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=63.76 Aligned_cols=150 Identities=9% Similarity=-0.038 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.++.-|..+|++++|+.|+-+.+... |.|+-++.+.|..|+...+|..|..-++.++. .+. ....+|...|..-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~-~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDK-LYVKAYSRRMQARES 177 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhH-HHHHHHHHHHHHHHH
Confidence 36778899999999999999999999 99999999999999999999999999999999 455 357789999999999
Q ss_pred cCCHHHHHHHHHHHHHhchh---ccc----CCcc-c--cccccCCcc-------HHH--HHHHHHHHHHCCCcHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSAS---LRK----DKPL-K--LLTFSQDKS-------LLI--TYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~---l~~----~~~l-~--~~~~~~~~~-------~~~--~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+|+..+|-+-++.+|.+-+. ++. -.++ + +.....+.. ... .-.-|.-+...|+++.++.||
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 99999999999999998432 100 0000 0 000001000 011 123366677777888888887
Q ss_pred HHHHHhcCCCHHH
Q 003047 467 QKSSLVFYKQPLL 479 (854)
Q Consensus 467 ~kAL~l~P~~~~a 479 (854)
.+-+..+.++..+
T Consensus 258 ~~~~A~~~~~~~L 270 (536)
T KOG4648|consen 258 VSPRATIDDSNQL 270 (536)
T ss_pred eccccccCccccC
Confidence 7766665555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.71 Score=55.44 Aligned_cols=272 Identities=16% Similarity=0.086 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCC
Q 003047 42 KFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKG 121 (854)
Q Consensus 42 ~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (854)
+-.+|++.++.+-+ .++....+.+|.+++.- .+..+.++.+++..++.+...+......
T Consensus 227 ~~~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G-~~g~~~d~e~a~~~l~~aa~~~~~~a~~------------------ 285 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK--LGHSEAQYALGICYLAG-TYGVTQDLESAIEYLKLAAESFKKAATK------------------ 285 (552)
T ss_pred hhhHHHHHHHHHHh--hcchHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHHHHHHHhh------------------
Confidence 45677788877754 46788899999886643 3567788888999998888521110000
Q ss_pred CCcccccccccccCCcccccchhhHHHHHHHHHHHHHh----h-cHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHH
Q 003047 122 SGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHL----H-EYAKALSVLEPLYQNIEPIDETTALQICLLLLDVAL 196 (854)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~----~-~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~ 196 (854)
..+.+.|.+|.+|.+- . ++.+|+++|.+.-..= . .+ .+++++.+|.
T Consensus 286 ----------------------~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~-~~-----a~~~lg~~~~ 336 (552)
T KOG1550|consen 286 ----------------------GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-N-PD-----AQYLLGVLYE 336 (552)
T ss_pred ----------------------cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-C-ch-----HHHHHHHHHH
Confidence 0233667778887773 3 8899999998888732 2 22 3677777777
Q ss_pred Hcc---CHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhh
Q 003047 197 ACH---DAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSE 273 (854)
Q Consensus 197 ~~~---~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (854)
... ++.+|. .+|..+.... .. +.
T Consensus 337 ~g~~~~d~~~A~---~yy~~Aa~~G-----~~-----------------------------~A----------------- 362 (552)
T KOG1550|consen 337 TGTKERDYRRAF---EYYSLAAKAG-----HI-----------------------------LA----------------- 362 (552)
T ss_pred cCCccccHHHHH---HHHHHHHHcC-----Ch-----------------------------HH-----------------
Confidence 666 456775 5777665322 00 00
Q ss_pred hhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC
Q 003047 274 ETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARG 353 (854)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~ 353 (854)
.-+++..|.. . -....+.+.|..-++++.+.+
T Consensus 363 ----------------------------~~~la~~y~~----------------G--~gv~r~~~~A~~~~k~aA~~g-- 394 (552)
T KOG1550|consen 363 ----------------------------IYRLALCYEL----------------G--LGVERNLELAFAYYKKAAEKG-- 394 (552)
T ss_pred ----------------------------HHHHHHHHHh----------------C--CCcCCCHHHHHHHHHHHHHcc--
Confidence 0001111100 0 001247778888888888887
Q ss_pred CCCHHHHHHHHHHHHHh-cCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhc
Q 003047 354 KDSSLALFLKSQLEYAR-RNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~-g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l 426 (854)
++.+.+.++.++... +++..+.-.+...... ..+..++..+......+.. ..+...+...+.++...
T Consensus 395 --~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 468 (552)
T KOG1550|consen 395 --NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---- 468 (552)
T ss_pred --ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----
Confidence 566667766666543 7777777766655442 1121122222222211111 12566666767666554
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLAC---GK-PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---Gk-~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+..+...+|.+|+.- ++ ++.|+.+|.++.... +...++||.++-
T Consensus 469 --------------g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550|consen 469 --------------GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred --------------cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHh
Confidence 2456777889988876 55 999999999998888 888899997655
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.031 Score=58.59 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc-cCCccc-cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR-KDKPLK-LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~-~~~~l~-~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
.++..-|+-+++.|+|.+|+..|+.|+....++. .+++-+ -+..-......++.|..-|++..|+|-++++....+|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999876653 111100 00000011234678999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHH
Q 003047 472 VFYKQPLLWLRLAECCL 488 (854)
Q Consensus 472 l~P~~~~aw~~La~~~i 488 (854)
.+|+|..++++.|.+..
T Consensus 259 ~~~~nvKA~frRakAha 275 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHA 275 (329)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 99999999999997655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.97 E-value=5.8 Score=48.24 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-----CCC---------------ccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR----T-----EMG---------------ISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~----~-----dp~---------------~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
.+++-|...+..+..++|.+++.++++. . .|. ....++..++.+.+-++++.+|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3456688888888888999999888873 1 111 011233346888888999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHH--------HHHHhcCCCHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQ--------KSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~--------kAL~l~P~~~~aw~~La~~ 486 (854)
.+..+-....+.... +...-.+.++|-.|..+...|+.+.|...|. .+....+.+.-..+...++
T Consensus 383 ~l~~~~~~~~~~~~~-------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSK-------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred HHHHHHHHHhcCccc-------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 888877764322100 0011246788899999999999999999998 4444555544444444444
Q ss_pred HH
Q 003047 487 CL 488 (854)
Q Consensus 487 ~i 488 (854)
++
T Consensus 456 ~~ 457 (608)
T PF10345_consen 456 AI 457 (608)
T ss_pred HH
Confidence 44
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=5.7 Score=47.36 Aligned_cols=514 Identities=14% Similarity=0.068 Sum_probs=279.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 33 EAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIA--IAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 33 ~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
+=..+....=..+=.-+|+.++..-|.+-++|+.-. +....+..|.....|...=..+++.+.
T Consensus 32 RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv--------------- 96 (835)
T KOG2047|consen 32 RYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLV--------------- 96 (835)
T ss_pred HHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH---------------
Confidence 334455555666777889999999999999998765 444444555554444333334444442
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLL 190 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~ 190 (854)
.+ -+.+..|.-....+..+++...---.|.+++.-++- +.+.+|.-+
T Consensus 97 ----------------------------~m--HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---tqH~rIW~l 143 (835)
T KOG2047|consen 97 ----------------------------FM--HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV---TQHDRIWDL 143 (835)
T ss_pred ----------------------------HH--hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---HhhccchHH
Confidence 11 123457777788888999998888888888885432 445566666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh
Q 003047 191 LLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT 270 (854)
Q Consensus 191 l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (854)
.+.-....+-+.-++.+|-+|-|..+-. .+ +... .-....+
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~~P~~-------------~e---------------------eyie-----~L~~~d~ 184 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKVAPEA-------------RE---------------------EYIE-----YLAKSDR 184 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCHHH-------------HH---------------------HHHH-----HHHhccc
Confidence 6666667777778887775555433221 11 1100 0011133
Q ss_pred hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH------hcCHHHHHHHH
Q 003047 271 LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL------TRNLKHAKREV 344 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~------~~~~~~A~~el 344 (854)
+.|++-.+..++. .... ++..+. .+..++..-..+..+ .-+.++ -+
T Consensus 185 ~~eaa~~la~vln--~d~f-------------------~sk~gk----Sn~qlw~elcdlis~~p~~~~slnvda---ii 236 (835)
T KOG2047|consen 185 LDEAAQRLATVLN--QDEF-------------------VSKKGK----SNHQLWLELCDLISQNPDKVQSLNVDA---II 236 (835)
T ss_pred hHHHHHHHHHhcC--chhh-------------------hhhccc----chhhHHHHHHHHHHhCcchhcccCHHH---HH
Confidence 4444444444430 0000 001111 112222222222111 112332 22
Q ss_pred HHHHHhcCCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHH-----HHHHHHcC---------
Q 003047 345 KLAMNIARGKDSSLA-LFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNL-----GCIYYQLA--------- 407 (854)
Q Consensus 345 k~al~~~~~P~~~~a-~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnL-----G~iy~~~g--------- 407 (854)
+.-+... ||...- +.-+|..|...|.+++|-.+|++++.. .-. +...++... -++-..++
T Consensus 237 R~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr-DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 237 RGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR-DFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh-hHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 3334444 555443 467999999999999999999999873 111 112222211 12222222
Q ss_pred ----CHHHHHHHHHHHHHhchh------cccC----------------Cc------cc----cc--cccCCccHHHHHHH
Q 003047 408 ----KYHTSSVFLSKALSNSAS------LRKD----------------KP------LK----LL--TFSQDKSLLITYNC 449 (854)
Q Consensus 408 ----~~~eAi~~f~kAL~~~~~------l~~~----------------~~------l~----~~--~~~~~~~~~~~~nL 449 (854)
+.+....-|+..+..-+- ++++ ++ +. .+ .........+|-.+
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 123333444444442110 0000 00 00 00 00111234678888
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeecc
Q 003047 450 GLQYLACGKPVLAARCFQKSSLVFYKQ----PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMED 525 (854)
Q Consensus 450 G~~ll~~Gk~eeAl~~y~kAL~l~P~~----~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~ 525 (854)
|..|...|+.+.|...|++++...-.. +.+|..-|+.-. +.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl---rh-------------------------------- 438 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL---RH-------------------------------- 438 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH---hh--------------------------------
Confidence 888888888888988888888876433 344555554322 11
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccc
Q 003047 526 GFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLS 605 (854)
Q Consensus 526 ~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (854)
...+.|..+.+.|...=....... +
T Consensus 439 -------------------------~~~~~Al~lm~~A~~vP~~~~~~~--y---------------------------- 463 (835)
T KOG2047|consen 439 -------------------------ENFEAALKLMRRATHVPTNPELEY--Y---------------------------- 463 (835)
T ss_pred -------------------------hhHHHHHHHHHhhhcCCCchhhhh--h----------------------------
Confidence 013557888887776532211000 0
Q ss_pred cccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-
Q 003047 606 SLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE- 684 (854)
Q Consensus 606 ~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~- 684 (854)
.++.+ +|+ ...-..-++...+...-+.|=+..-...|.+++.
T Consensus 464 --------------d~~~p-----------vQ~------------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 464 --------------DNSEP-----------VQA------------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred --------------cCCCc-----------HHH------------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00000 000 0000113466667777788999999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCC
Q 003047 685 LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPED 764 (854)
Q Consensus 685 ~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 764 (854)
.-..|..-.+.|.+.. .-.-++||-+.|++.++ + |+-+++.+
T Consensus 507 riaTPqii~NyAmfLE-----eh~yfeesFk~YErgI~--L-----Fk~p~v~d-------------------------- 548 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLE-----EHKYFEESFKAYERGIS--L-----FKWPNVYD-------------------------- 548 (835)
T ss_pred hcCCHHHHHHHHHHHH-----hhHHHHHHHHHHHcCCc--c-----CCCccHHH--------------------------
Confidence 3345556666665322 45668999999999983 2 22222222
Q ss_pred CCCCCCCCchhhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh-cCC
Q 003047 765 SRDTMFPKPEEARGTL-YVNIAAMFAMQGEFERAHHFVTQALSILPRS--TEATLTAIYVDLMLGKSQEALAKLKY-CNH 840 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~-~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~ 840 (854)
.+. |..-...-.-.-.++.|..+|+|||..+|.. ..+.++.+-++-.-|-...|+.++++ ...
T Consensus 549 -------------iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 549 -------------IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred -------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 111 2112222223368999999999999999843 34555666666677999999999988 554
Q ss_pred Cc
Q 003047 841 VR 842 (854)
Q Consensus 841 ~~ 842 (854)
|+
T Consensus 616 v~ 617 (835)
T KOG2047|consen 616 VK 617 (835)
T ss_pred CC
Confidence 43
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.011 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|++|.++...|++++|...|++++..+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999985
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.18 Score=51.47 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhh
Q 003047 660 ANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQW 739 (854)
Q Consensus 660 ~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~ 739 (854)
..+|-+..+-|+++.|+...+.+|..|.+ +.++.++.+-+|..++.++++++|+..|+.... .+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~------------- 156 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKE--ES------------- 156 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--cc-------------
Confidence 35577888999999999999999988775 488899999999999999999999998877661 10
Q ss_pred hHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003047 740 RVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 740 ~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
| .+..---.|.++...|+-++|+..|.+++...++.+.
T Consensus 157 ----------------------------w--------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 157 ----------------------------W--------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred ----------------------------H--------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 1 1222334688999999999999999999998866543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.78 E-value=4.1 Score=45.13 Aligned_cols=139 Identities=10% Similarity=-0.046 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhc-cc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN-SASL-RK 428 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~-~~~l-~~ 428 (854)
......++..+.+.-..|+++-|...+.++... .+. ..+.+..-.+.+....|+..+|+..++..+.. .... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 455577888999999999999999999998872 210 12445666788999999999999999998883 2110 00
Q ss_pred C--Ccc--------c------cccccCCccHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 429 D--KPL--------K------LLTFSQDKSLLITYNCGLQYLAC------GKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 429 ~--~~l--------~------~~~~~~~~~~~~~~nLG~~ll~~------Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
. ..+ . .........+.+++.+|.-.... +..++++..|.+++.++|+...+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 000 0 00111122466777888888888 789999999999999999999999999999
Q ss_pred HHHHHhc
Q 003047 487 CLMALEK 493 (854)
Q Consensus 487 ~i~~~~~ 493 (854)
+......
T Consensus 302 ~~~~~~~ 308 (352)
T PF02259_consen 302 NDKLLES 308 (352)
T ss_pred HHHHHHh
Confidence 8865553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.17 Score=59.43 Aligned_cols=141 Identities=16% Similarity=0.039 Sum_probs=102.5
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHH-------H--HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLA-LFLKSQLE-------Y--ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a-~~lla~ly-------~--~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..|+-+.+++.+..+.+-. +-..+-+ +.+++... . .....+.|.+++..... .-|+ .+..+...|.+
T Consensus 200 F~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-~yP~-s~lfl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-RYPN-SALFLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHH
Confidence 3578888888888877633 1122221 22222111 1 35677889999999998 6884 57777778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...|+.++|+..|++++....+++ .-..-.++.+|.+++.+++|++|.++|.+.++...-....+..
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~------------Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWK------------QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHH------------hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999996422111 0135678899999999999999999999999987776666666
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
++-||.
T Consensus 345 ~~a~c~ 350 (468)
T PF10300_consen 345 LAAACL 350 (468)
T ss_pred HHHHHH
Confidence 666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.16 Score=55.40 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=103.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR-RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~-g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.++....+.++.|...++++.+.. +-....|...|.+.+.. ++.+.|.++|+..++ .-|. ...+|......+...
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk-~f~~-~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK-KFPS-DPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHh
Confidence 455666677999999999999666 77788999999998885 555559999999999 5674 567787778888999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
++.+.|-..|++++..++ ... ...+|-..-..-...|+.+.....++++.++.|+...++.
T Consensus 84 ~d~~~aR~lfer~i~~l~--------------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 84 NDINNARALFERAISSLP--------------KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp T-HHHHHHHHHHHCCTSS--------------CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred CcHHHHHHHHHHHHHhcC--------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999998732 111 2345655566667779999999999999999999666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.45 Score=51.63 Aligned_cols=146 Identities=15% Similarity=0.035 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.+++-.+..+++.+|...++.++... |++.++.+.++..|...|+.+.|..+|..... ... ...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~---~~~~~~---- 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQ---DKAAHG---- 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cch---hhHHHH----
Confidence 45567778889999999999999999999 99999999999999999999999999887654 222 122211
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw 480 (854)
....++.+.++=..- +. ..+.-..-..|.+.++-+.++..|...|++++|++.+-..+..+.+. ..+.
T Consensus 206 ------l~a~i~ll~qaa~~~-~~---~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 206 ------LQAQIELLEQAAATP-EI---QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred ------HHHHHHHHHHHhcCC-CH---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 111233333332220 00 00000000134577889999999999999999999999999887544 5567
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
-+|-++..
T Consensus 276 k~lle~f~ 283 (304)
T COG3118 276 KTLLELFE 283 (304)
T ss_pred HHHHHHHH
Confidence 77776665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.41 E-value=9.2 Score=46.55 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHHHH-HhhcHHHHHHHHHHhhhccCC--CchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 143 FDVSVAKLNIAVIWF-HLHEYAKALSVLEPLYQNIEP--IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~-~~~~y~~A~~~~e~l~~~~~~--~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
...+..++-+|.+|+ ...+++.|..+++|.....+. ..|... ..-++++.+|...+... |. ..+.+.+...+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~-~~~~ll~~i~~~~~~~~-a~---~~l~~~I~~~~ 130 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF-RCQFLLARIYFKTNPKA-AL---KNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH-HHHHHHHHHHHhcCHHH-HH---HHHHHHHHHHh
Confidence 457788999998877 999999999999998775543 233222 23455678888888777 65 55666554321
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
.. ..
T Consensus 131 ~~--------------------------------------------------------------------~~-------- 134 (608)
T PF10345_consen 131 TY--------------------------------------------------------------------GH-------- 134 (608)
T ss_pred cc--------------------------------------------------------------------Cc--------
Confidence 00 00
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHHhcCHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLA----LFLKSQLEYARRNHRK 375 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a----~~lla~ly~~~g~~~k 375 (854)
....-.+++.|+.+++..++...|++.++........+.++.. .+..+.++...+..++
T Consensus 135 -----------------~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 135 -----------------SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred -----------------hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 0011234556777887778999999999999988732344433 3456888889999999
Q ss_pred HHHHHHHhhhc---c--CCC-c--cHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhchhccc--------CCc-ccc--
Q 003047 376 AIKLLLALSNR---T--EMG-I--SSMFNNNL--GCIYYQLAKYHTSSVFLSKALSNSASLRK--------DKP-LKL-- 434 (854)
Q Consensus 376 Al~~l~kal~~---~--dp~-~--~a~~~nnL--G~iy~~~g~~~eAi~~f~kAL~~~~~l~~--------~~~-l~~-- 434 (854)
+++.++++... . +|. . .-.++.-+ -+++...|++..+...+++.=..+..... ++. +++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 99999988542 1 110 0 12233323 44566778877776665554333222110 111 110
Q ss_pred -----------ccc---cCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 435 -----------LTF---SQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 435 -----------~~~---~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
..+ +... ..-+++--|.+.+..+..++|.+++.+++..-.+
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~ 333 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEK 333 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHH
Confidence 011 1111 1334455588899999988999999998875443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.3 Score=46.98 Aligned_cols=151 Identities=13% Similarity=-0.074 Sum_probs=98.9
Q ss_pred HHHHHHH---hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccCCCccHH
Q 003047 327 KVRFLLL---TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 327 K~~lyl~---~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
.+..+-. .|+.++|+..+..++.... +.+++.+.+.|.+|... ...++|+..|.++.. .+|+. .
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~--Y 260 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDE-NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDY--Y 260 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccc--c
Confidence 3444445 7899999999999444431 89999999999998632 347899999999999 66743 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.-.|++.++.-.|...+.....++.......+ ..... .....+.=.+-.+..+....|++++|.+++++++.+.
T Consensus 261 ~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-----~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 261 SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-----LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 45678888888887666665555544221111 10000 0011122222355778888999999999999999998
Q ss_pred CCCHHHHHHHHHH
Q 003047 474 YKQPLLWLRLAEC 486 (854)
Q Consensus 474 P~~~~aw~~La~~ 486 (854)
|..-....-+.++
T Consensus 336 ~~~W~l~St~~ni 348 (374)
T PF13281_consen 336 PPAWELESTLENI 348 (374)
T ss_pred CcchhHHHHHHHH
Confidence 7744433333333
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.039 Score=63.76 Aligned_cols=108 Identities=19% Similarity=0.016 Sum_probs=87.5
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH
Q 003047 364 SQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL 443 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~ 443 (854)
|..+-..|+...|++++..++. ..|.....-+.+|+.+...-|-...|-..+.++|.+. ...+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~-~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~----------------~sep 676 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALN-LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN----------------SSEP 676 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhc-cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc----------------ccCc
Confidence 4444578999999999999988 4554334456778888888888889999999999982 2235
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
..+|.+|.+++.+.+.+.|++.|++|++++|+++..-..|-.+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 678899999999999999999999999999999998777665444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.064 Score=43.39 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 780 ~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
-+|.||..+...|+|++|.++++.+|++.|++..+..+...|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 3678999999999999999999999999999998888877764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.045 Score=40.29 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 445 ITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 445 ~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
+|.+||.+|...|++++|+++|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999765543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.032 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.+++++|.+++..|++++|..+|++++.+.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.044 Score=36.92 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
..++++|.++..+|++++|..++++++++.|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 357899999999999999999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=11 Score=43.80 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSR--KFDECLDLLKQLLDKKPDD---PKILHNIAIAEY-FRDGCTDPKKLLEALNNVKNKSEELA 98 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g--~y~~Al~~l~~~l~~~~~~---~~~l~nla~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (854)
++++.|..-|.-+-..| +...|+++++-.+...|.+ ++..-.||-+-+ |..+ +.-+-..++++.-..
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N------~elAksHLekA~~i~- 77 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKN------VELAKSHLEKAWLIS- 77 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHH-
Confidence 67888888887777778 8999999999999987664 344444554433 2222 222334444444110
Q ss_pred hhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccC
Q 003047 99 RATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIE 177 (854)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~ 177 (854)
+ .||+-| | ..-..+--++.+|.+.. .+..|-..+.+.+..-+
T Consensus 78 ----~------~ip~fy-------------------------d--vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 78 ----K------SIPSFY-------------------------D--VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred ----c------ccccHH-------------------------h--hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 0 011111 1 12234555688888777 78888889998888555
Q ss_pred CCchhhHHHHHHHHHHHHHHccCHHHHHHH
Q 003047 178 PIDETTALQICLLLLDVALACHDAFRSADV 207 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~ 207 (854)
.+. +...+..|-|+++.....++.-|++.
T Consensus 121 ~~p-~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 121 SVP-YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred CCc-hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 443 44555667788999999999999864
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.2 Score=54.33 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 765 SRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 765 p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
|.+..|-++.+.-..+..||-.+|...+++++|.+|.+..+.+.|++++-+.-+++++.++|.+..|..-|+. ..+-|.
T Consensus 168 ~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 168 NEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4445566777778889999999999999999999999999999999999999999999999999999999988 788888
Q ss_pred cccc
Q 003047 844 LPSG 847 (854)
Q Consensus 844 ~~~~ 847 (854)
+|.-
T Consensus 248 dp~a 251 (269)
T PRK10941 248 DPIS 251 (269)
T ss_pred chhH
Confidence 8853
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.07 Score=37.63 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 780 LYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 780 ~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
+++++|.++..+|++++|.+.+++++..-|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999975
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.5 Score=47.69 Aligned_cols=126 Identities=15% Similarity=-0.005 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-----
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----- 407 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----- 407 (854)
..+|..-++...+ ..++.+.+.+|.+|.. ..++.+|.++|.++.....+ ......+++|.+|..-+
T Consensus 93 ~~~A~~~~~~~a~----~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 93 KTKAADWYRCAAA----DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred HHHHHHHHHHHhh----cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcc
Confidence 4556666653333 4588899999999997 55999999999999884233 11233677999987642
Q ss_pred --CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 408 --KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 408 --~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
+...|+.+|.++-.. ....+.+++|.+|.. ..++++|+..|.++.+... ...++
T Consensus 168 ~~~~~~A~~~~~~aa~~------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 168 AYDDKKALYLYRKAAEL------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred cHHHHhHHHHHHHHHHh------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 233788888888776 245788899988865 3468999999999999888 88899
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.++ +..
T Consensus 228 ~~~-~~~ 233 (292)
T COG0790 228 NLG-LMY 233 (292)
T ss_pred HHH-HHH
Confidence 998 544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.098 Score=38.90 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+.++++||.+|..+|++++|+.++++++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 457899999999999999999999999998443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.07 E-value=2 Score=45.24 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPD----DPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~----~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+.+-+.+|...|.+++-.+|.+.++++.++-.. .-.+.|.+-++++|-.+ ..++.+++...+.+.+-..
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk--- 145 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYK--- 145 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHc---
Confidence 3456677888888888888888888888887322 23445555566776654 3444556655555553210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
.++.. + ..| .-+...|..--.++||.+||++||++.+. .++.
T Consensus 146 ~ees~-----------------------------s------sAN-KC~lKvA~yaa~leqY~~Ai~iyeqva~~--s~~n 187 (288)
T KOG1586|consen 146 GEESV-----------------------------S------SAN-KCLLKVAQYAAQLEQYSKAIDIYEQVARS--SLDN 187 (288)
T ss_pred chhhh-----------------------------h------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc
Confidence 00000 0 001 12234466677899999999999999884 3444
Q ss_pred hh---HHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 182 TT---ALQICLL-LLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 182 ~~---~~~~~l~-l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
.+ ..+-+|+ -+..++...+.--+-..|..|+...
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 32 3344444 3355555566665655555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.2 Score=45.33 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSV 217 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~ 217 (854)
+.+.-..+..+|..|+..|++++|++.|.++...- ......+.+|+.++.|.+..+++..+.. +++|+...
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~---~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEK---YIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHH
Confidence 45566789999999999999999999999987743 2233456689999999999999999974 55655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.65 Score=50.99 Aligned_cols=125 Identities=15% Similarity=-0.017 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhH
Q 003047 663 AYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRV 741 (854)
Q Consensus 663 a~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~ 741 (854)
+.+....|++-+|-.-..++|. .|.+--+.++--. |+..+|+...-...+++.+ +.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~-----a~fy~G~~~~~k~ai~kIi--p~---------------- 166 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHD-----AHFYNGNQIGKKNAIEKII--PK---------------- 166 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhh-----HHHhccchhhhhhHHHHhc--cc----------------
Confidence 4457788999999888999997 6776545444332 5556777777777777776 21
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003047 742 EKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYV 821 (854)
Q Consensus 742 ~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~ 821 (854)
|.|.-|- ..-++--+|..+.+-|-|++|++..+++++++|.+..+....+.|
T Consensus 167 --------------------------wn~dlp~--~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 167 --------------------------WNADLPC--YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV 218 (491)
T ss_pred --------------------------cCCCCcH--HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence 2222111 344455577778888999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHhc
Q 003047 822 DLMLGKSQEALAKLKYC 838 (854)
Q Consensus 822 ~L~~G~~~eA~~~lk~~ 838 (854)
+-..|++.++.+...+.
T Consensus 219 lem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 219 LEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhcchhhhHHHHHHhc
Confidence 99999999999988663
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.75 Score=55.23 Aligned_cols=130 Identities=22% Similarity=0.158 Sum_probs=98.7
Q ss_pred cCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 335 RNLKHAKREVKLAMNI---ARGKDSSLALFLKSQLEYARR-----NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 335 ~~~~~A~~elk~al~~---~~~P~~~~a~~lla~ly~~~g-----~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+++.|+..++.+... ...-.++.+.+.+|.+|+... ++++|+++|.++-.... +...+.+|.+|..-
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETG 338 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcC
Confidence 4788888888887661 000124567888999999853 78999999999988322 34566799999865
Q ss_pred C---CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhcCCCHHH
Q 003047 407 A---KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC----GKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 407 g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~----Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
. ++..|.+||..|-.. ....++++++.||..- .+.+.|+.+|.++.+.. ++.+
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~------------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKA------------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred CccccHHHHHHHHHHHHHc------------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 5 578999999999886 2467888999998754 45899999999999988 6677
Q ss_pred HHHHHHHHH
Q 003047 480 WLRLAECCL 488 (854)
Q Consensus 480 w~~La~~~i 488 (854)
.+.++.++.
T Consensus 399 ~~~~~~~~~ 407 (552)
T KOG1550|consen 399 AYLLGAFYE 407 (552)
T ss_pred HHHHHHHHH
Confidence 777776665
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.99 E-value=7.2 Score=41.26 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhc----CC-CCHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 003047 23 VLSVTATLAKEAALYFQ-SRKFDECLDLLKQLLDK----KP-DDPKI-LHNIAIAEYFRDGCTDPKKLLEALNNVKNKSE 95 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~-~g~y~~Al~~l~~~l~~----~~-~~~~~-l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~ 95 (854)
-..++..|+.+|-.-|. ..+++.|=..|-++-+. +. .|... +-..+.+ |++ .+..++.+.+.++++
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c--ykk-----~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC--YKK-----VDPEEAVNCLEKAIE 101 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hhc-----cChHHHHHHHHHHHH
Confidence 56788888888776554 57888898888888774 22 23322 3333322 222 344458888888886
Q ss_pred HHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchh-hHHHHHHHHHHHHHh-hcHHHHHHHHHHhh
Q 003047 96 ELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFD-VSVAKLNIAVIWFHL-HEYAKALSVLEPLY 173 (854)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~a~~~~~~-~~y~~A~~~~e~l~ 173 (854)
...+ +++.. -+-...-+|.+|-.- .++++||.+||++-
T Consensus 102 Iyt~----------------------------------------~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 102 IYTD----------------------------------------MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHh----------------------------------------hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5421 11111 122444568888776 99999999999998
Q ss_pred hccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 174 QNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 174 ~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
..+..-+-.. +-+.++-.++.--++++|.+||++ ||+.-
T Consensus 142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~i---yeqva 181 (288)
T KOG1586|consen 142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDI---YEQVA 181 (288)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 8654433332 444333455778889999999965 46543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.4 Score=44.38 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 657 ALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 657 ~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
-+++..+.+...-|+-..|+.++.++-...+.|...+-++++-.+..|+..|-|++-...+++.-. +
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---d---------- 161 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---D---------- 161 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---C----------
Confidence 345666888999999999999999999888888999999999999999999999988777776552 0
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
++|- +..+.--||.+-..-|++..|++.|.++.+ +...|..+.
T Consensus 162 --------------------------~n~m----------R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnir 204 (221)
T COG4649 162 --------------------------GNPM----------RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIR 204 (221)
T ss_pred --------------------------CChh----------HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHH
Confidence 0122 455566688899999999999999999887 444455555
Q ss_pred HHHHH
Q 003047 817 TAIYV 821 (854)
Q Consensus 817 l~~y~ 821 (854)
.++.+
T Consensus 205 qRAq~ 209 (221)
T COG4649 205 QRAQI 209 (221)
T ss_pred HHHHH
Confidence 55555
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.6 Score=45.97 Aligned_cols=163 Identities=17% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 003047 149 KLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSM 228 (854)
Q Consensus 149 ~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~ 228 (854)
-+-.+.-....+++.+|...|..+++..+...+ +.+.++.+|+..|+.+.|..+|+.+- .. ...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----~~~~la~~~l~~g~~e~A~~iL~~lP----~~--~~~~---- 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----AKLLLAECLLAAGDVEAAQAILAALP----LQ--AQDK---- 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----HHHHHHHHHHHcCChHHHHHHHHhCc----cc--chhh----
Confidence 345567789999999999999999997766655 68889999999999999987653221 10 0000
Q ss_pred ccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhh
Q 003047 229 GQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRT 308 (854)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (854)
..
T Consensus 202 --------------------------~~---------------------------------------------------- 203 (304)
T COG3118 202 --------------------------AA---------------------------------------------------- 203 (304)
T ss_pred --------------------------HH----------------------------------------------------
Confidence 00
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC
Q 003047 309 LVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 309 ~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d 388 (854)
.+ ... +..++.+.....+ ..++++.+..+ |++..+-+.+|..+...|+++.|++.+-.++++..
T Consensus 204 -------~~-l~a-----~i~ll~qaa~~~~-~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 204 -------HG-LQA-----QIELLEQAAATPE-IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -------HH-HHH-----HHHHHHHHhcCCC-HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 00 001 1223333333332 24566778888 99999999999999999999999999999998411
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKAL 420 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL 420 (854)
......+.-.|-.++...|.-+.+...|++=|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 268 GFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred cccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 11112344445566666664444545455433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.14 Score=41.48 Aligned_cols=40 Identities=10% Similarity=-0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 444 LITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+.+|.++..+.++|+|++|..+.+.+|++.|+|..+..-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678899999999999999999999999999998774433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=49.22 Aligned_cols=137 Identities=12% Similarity=-0.028 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-c-c-C---------
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG--KDSSLALFLKSQLEYARRNHRKAIKLLLALSN-R-T-E--------- 388 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~--P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~-~-~-d--------- 388 (854)
..+.-+++....|.++-|...+.++...... +..+...+..+.+....|+..+|+..++..+. . . .
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 4555688999999999999999999886511 12567888999999999999999999988887 1 0 0
Q ss_pred --------------------CCccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhchhcccCCccccccccCCcc
Q 003047 389 --------------------MGISSMFNNNLGCIYYQL------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS 442 (854)
Q Consensus 389 --------------------p~~~a~~~nnLG~iy~~~------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~ 442 (854)
....+.++..+|...... ++.++++.+|++++... +..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~----------------~~~ 291 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD----------------PSW 291 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC----------------hhH
Confidence 012244555667766667 88889999999999983 334
Q ss_pred HHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHhcCC
Q 003047 443 LLITYNCGLQYLACGK-----------------PVLAARCFQKSSLVFYK 475 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk-----------------~eeAl~~y~kAL~l~P~ 475 (854)
..+|+..|..+...=. ...|+.+|-+++...++
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 5567777666554311 23488888888888887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.65 Score=41.84 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI-SSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~-~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
.+..++..+..+ |++..+.+.+|..++..|++++|++.+..+++ .++.. ...+.-.|-.++.-+|.-+.-..-|++
T Consensus 7 ~~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~-~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVR-RDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 456788899999 99999999999999999999999999999999 45432 234555566777777775555555555
Q ss_pred HHH
Q 003047 419 ALS 421 (854)
Q Consensus 419 AL~ 421 (854)
-|.
T Consensus 84 kL~ 86 (90)
T PF14561_consen 84 KLA 86 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.16 Score=37.76 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSIL 808 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~ 808 (854)
+..+.|||.+|..+|++++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4667999999999999999999999998863
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.2 Score=40.41 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhc--cCCC--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--cCCc
Q 003047 364 SQLEYARRNHRKAIKLLLALSNR--TEMG--------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--KDKP 431 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~--~dp~--------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~~~~ 431 (854)
|.-.+.-|-|++|...|.++... .-|. ..+..+-.|...+..+|+|++++..-.++|.-+..-. ..+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 44556778899999999888762 1121 3355666788899999999999999999998643211 1110
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
......+.++.+.++..+|++++|+..|+++-+.
T Consensus 96 -------GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 -------GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 0113567899999999999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.92 Score=49.87 Aligned_cols=129 Identities=9% Similarity=-0.024 Sum_probs=95.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH--HHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN--NNLGCIYY 404 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~--nnLG~iy~ 404 (854)
++-+..-.|++.+|-.+.+++++-. |.+.-++-.--..++.+|+...-...+++++..-+|+.+-..| -.++-.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 3445556899999999999999999 9999999989999999999999999999999842443333333 23455666
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..|-|++|.+.-++++++. +.+.=+...++.++...|++.++.+...+.-...
T Consensus 187 E~g~y~dAEk~A~ralqiN----------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN----------------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HhccchhHHHHHHhhccCC----------------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 8899999999999999982 2223344455666667777777776666544433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.78 Score=48.15 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=76.9
Q ss_pred hcCHHHHHHHHHHhhhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccC-CccccccccCCcc
Q 003047 370 RRNHRKAIKLLLALSNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKD-KPLKLLTFSQDKS 442 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~-~~l~~~~~~~~~~ 442 (854)
...+++|++.|.-++-- ..|...+..+..++.+|..+|+.+....++++|+....+. ... .+. ..-..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-----~~~~~ 164 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-----EGMDE 164 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-----CCchH
Confidence 45666777766665531 2444457788889999999999888888888888874331 111 000 01124
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAE 485 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~ 485 (854)
..++|-+|....+.|++++|...|.+++.....+. .....+|.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 67889999999999999999999999988765544 34555553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.14 Score=58.61 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=84.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++.-.+.-+.++.|+.-+-++++++ |+.+.++-+.+..+...++|..|+.-+.++++ .+|. ...+|+..|.++.++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie-~dP~-~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE-LDPT-YIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh-cCch-hhheeeeccHHHHhH
Confidence 3455667789999999999999999 99999999999999999999999999999999 7884 577888889999999
Q ss_pred CCHHHHHHHHHHHHHhch
Q 003047 407 AKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~ 424 (854)
+++.+|..-|++...+.|
T Consensus 86 ~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 999999999999888744
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.06 Score=59.06 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=78.3
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
-.+..|++++|++.|.+++. ..|. .+..|-..+.+|.+++++..||.-+..|+.+.+ ..+.-
T Consensus 123 eAln~G~~~~ai~~~t~ai~-lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~----------------Dsa~~ 184 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIE-LNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINP----------------DSAKG 184 (377)
T ss_pred HHhcCcchhhhhcccccccc-cCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCc----------------ccccc
Confidence 34567889999999999999 6774 678888899999999999999999999999832 22233
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-HHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-PLLWLR 482 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-~~aw~~ 482 (854)
|--.|.+...+|++++|...|..+++++-+- ..+|+-
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lK 222 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLK 222 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHH
Confidence 3346888888999999999999999988654 334543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.46 E-value=15 Score=44.27 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=65.3
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSS-LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~-~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.|-+.|++++|.+--.+. . +|... ..++.++.-....|+|.+|..+|-.+ ..|+. + . ..|.+.|.
T Consensus 800 my~k~~kw~da~kla~e~---~-~~e~t~~~yiakaedldehgkf~eaeqlyiti---~~p~~-a--i----qmydk~~~ 865 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEEC---H-GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---GEPDK-A--I----QMYDKHGL 865 (1636)
T ss_pred HHhccccHHHHHHHHHHh---c-CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---cCchH-H--H----HHHHhhCc
Confidence 345667777666543332 2 24443 34456777777888888888777433 34531 2 1 33556666
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
++.-+....|--- +.-.+....+|.-|...|+..+|.+.|.++-.
T Consensus 866 ~ddmirlv~k~h~------------------d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 866 DDDMIRLVEKHHG------------------DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred chHHHHHHHHhCh------------------hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 6666554444211 11245666778888888888888887776544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.84 Score=46.43 Aligned_cols=108 Identities=18% Similarity=0.034 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.++..+|..|...|++++|++.|.++... ..+......+.++-.+..-.+++.....+..||-.....-. +
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~--d------ 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG--D------ 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--h------
Confidence 57788999999999999999999998874 33444556667777888889999999999999988733210 0
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
.......----|..++..++|.+|-..|..++.-+..
T Consensus 109 --~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 109 --WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred --HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 0011122223489999999999999999888766653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=5.3 Score=43.40 Aligned_cols=129 Identities=21% Similarity=0.140 Sum_probs=94.3
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ---- 405 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~---- 405 (854)
.+++..|...++.+.... ++.+.+.++..|.. ..+..+|+++|.++.. . ..+...++||.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~---~-g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA---D-GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh---c-ccHHHHHhHHHHHhcCCCc
Confidence 455666666666666543 33677888888774 4468999999997766 2 245677889999987
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCcc-HHHHHHHHHHHHHCC----C---cHHHHHHHHHHHHhcCCCH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKS-LLITYNCGLQYLACG----K---PVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~-~~~~~nLG~~ll~~G----k---~eeAl~~y~kAL~l~P~~~ 477 (854)
..++.+|..+|++|-.. .... ..+.+++|.+|..-. - ...|+..|.++.... ++
T Consensus 126 ~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~ 187 (292)
T COG0790 126 PLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187 (292)
T ss_pred ccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence 55999999999999987 1111 234778888888752 2 236999999988887 78
Q ss_pred HHHHHHHHHHH
Q 003047 478 LLWLRLAECCL 488 (854)
Q Consensus 478 ~aw~~La~~~i 488 (854)
.+.++||.++.
T Consensus 188 ~a~~~lg~~y~ 198 (292)
T COG0790 188 DAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHHHHH
Confidence 88999997776
|
|
| >COG3014 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.03 E-value=7.5 Score=43.06 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---------cCCCcc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR---------TEMGIS 392 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---------~dp~~~ 392 (854)
-+++||+.-|+..++++.|.-|++++.... ++|-+++.+.+.. .+|
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ----------------------~~AKe~~~~ei~ka~~e~ds~k~~~--- 180 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANERQ----------------------RRAKEFYYEEVQKAIKEIDSSKHNI--- 180 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhccCCC---
Confidence 388999999999999999999999998877 3444444444431 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSV-FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~-~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|+|....+ -.++++ -|.--+.. +...+ .-..+.+-|..|..+...|++.++...+..++-
T Consensus 181 -----N~~~~~ae---~s~~i~n~Y~ny~~~---yea~~--------~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~g 241 (449)
T COG3014 181 -----NMERSRAE---VSEILNNTYSNYLDK---YEAYQ--------GLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYG 241 (449)
T ss_pred -----chhHHHHH---HHHHHHHHHHHHHHH---HHhhc--------ccchHHHHHHHHHhcccCccHhHHHHHHHHHhc
Confidence 12222221 111111 00000110 00000 012356667789999999999999999999999
Q ss_pred hcCCCHHH
Q 003047 472 VFYKQPLL 479 (854)
Q Consensus 472 l~P~~~~a 479 (854)
+.|+...+
T Consensus 242 i~qd~~~~ 249 (449)
T COG3014 242 ISQDQSPF 249 (449)
T ss_pred cCchhhHH
Confidence 99994443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.6 Score=47.83 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=82.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIAR--GKDSSLALFLKSQLEYA---RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~--~P~~~~a~~lla~ly~~---~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
|-...+++.-++-++.+-.+.. .++.+...++.|..+.. .|+.++|+.++..++...++ ..++.+--+|.+|..
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLGLLGRIYKD 229 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHHHHHHHHHH
Confidence 4445566666666666655510 16677888999999999 99999999999997663333 467788889999975
Q ss_pred c---------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHH
Q 003047 406 L---------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLA 462 (854)
Q Consensus 406 ~---------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA 462 (854)
+ ...++|+.+|+|++.+. ++...-.|++..+...|...+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~-----------------~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIE-----------------PDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCC-----------------ccccchHHHHHHHHHcCCcccc
Confidence 3 24789999999999982 2334445888888888874443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.85 E-value=4.8 Score=43.56 Aligned_cols=217 Identities=15% Similarity=0.079 Sum_probs=133.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT---ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGS 227 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~---~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~ 227 (854)
-+|.-..+..+|++|+..|.+++..=-..+|.. .....+.++.+|...|++.+--+++.....+..-..+. +.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~--k~-- 83 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP--KI-- 83 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--hH--
Confidence 345556788999999999999998634444442 45567889999999999987665543333222111000 00
Q ss_pred cccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhh
Q 003047 228 MGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSR 307 (854)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (854)
------+.-+.+-.|+..+ -.++.-.. -..|-++
T Consensus 84 -~KiirtLiekf~~~~dsl~--------------------------dqi~v~~~---------~iewA~r---------- 117 (421)
T COG5159 84 -TKIIRTLIEKFPYSSDSLE--------------------------DQIKVLTA---------LIEWADR---------- 117 (421)
T ss_pred -HHHHHHHHHhcCCCCccHH--------------------------HHHHHHHH---------HHHHHHH----------
Confidence 0000000001111110000 00000000 0011110
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 308 TLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA----RGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 308 ~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~----~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
+.-.-.+..++...+-+|...|++.+|+..+..++... ++|+-...+++-..+|+...+..|+-..+..+
T Consensus 118 ------Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 118 ------EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 11233566777888889999999999999988876543 45777889999999999999999999988876
Q ss_pred hhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 384 SNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 384 l~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
... -.|...+..-..=|.+|+.-.+|.-|-.||-+|++-+
T Consensus 192 rt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 192 RTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 652 2333333333323889999999999999999999963
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.8 Score=45.73 Aligned_cols=112 Identities=8% Similarity=-0.010 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-LAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
+|....+..-..+..+.|-++|.++++ ..+ ....+|...+.+-+. .++.+.|...|+.+++..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-DKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------------
Confidence 455666777777789999999999997 333 334678778888666 566666999999999983
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP---LLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i 488 (854)
+.+...|..-...+...++.+.|...|++++..-|... .+|....+.-.
T Consensus 67 --~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 67 --PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp --TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 23456777778889999999999999999999888766 57777665433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.57 E-value=55 Score=40.88 Aligned_cols=323 Identities=13% Similarity=-0.007 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.-.+.+..-+.++...|..++|+++--.+ .||..-+...-+.|.-....++... +...++..|.
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~-------- 408 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA---GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPA-------- 408 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC---CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCH--------
Confidence 555778888899999999999999985544 4564334444444554555555332 2222222111
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhccccCCCCCCCCCccccee
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVH 511 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~ 511 (854)
..+...+.-.. --+-.....+++.+|..+..++...-|.. ...-..+|+... .+
T Consensus 409 -~~l~~~P~Lvl--l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--L~------------------- 464 (894)
T COG2909 409 -ELLASTPRLVL--LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--LR------------------- 464 (894)
T ss_pred -HHHhhCchHHH--HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--HH-------------------
Confidence 01111222222 23556778899999999998887766552 222222222111 01
Q ss_pred eccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccc
Q 003047 512 VIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESS 591 (854)
Q Consensus 512 ~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~ 591 (854)
++ ..+....++.|...-+.|+...|....-
T Consensus 465 --------a~------------------------val~~~~~e~a~~lar~al~~L~~~~~~------------------ 494 (894)
T COG2909 465 --------AQ------------------------VALNRGDPEEAEDLARLALVQLPEAAYR------------------ 494 (894)
T ss_pred --------HH------------------------HHHhcCCHHHHHHHHHHHHHhcccccch------------------
Confidence 00 0011113578999999999999884310
Q ss_pred cccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC
Q 003047 592 EGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN 671 (854)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~ 671 (854)
.+...+..++-+..+.|+
T Consensus 495 --------------------------------------------------------------~r~~~~sv~~~a~~~~G~ 512 (894)
T COG2909 495 --------------------------------------------------------------SRIVALSVLGEAAHIRGE 512 (894)
T ss_pred --------------------------------------------------------------hhhhhhhhhhHHHHHhch
Confidence 001234456778889999
Q ss_pred HHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC----CCCCCchhhhhhhHhhh-
Q 003047 672 PVKALAAARSLLEL--PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF----DLPFSGEDCEQWRVEKI- 744 (854)
Q Consensus 672 ~~~Al~~~~~lL~~--p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~- 744 (854)
+.+|+.+-+++... .-...-+-.++.+..++.|...|+..-|.............. ...|...-..+.+..+.
T Consensus 513 ~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r 592 (894)
T COG2909 513 LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR 592 (894)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 99999999888863 334445566677778888888995554444443333111111 01122222222111111
Q ss_pred hhhhhccC--CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC-----HHHH
Q 003047 745 IDCEELNG--GPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL--PRS-----TEAT 815 (854)
Q Consensus 745 ~d~~~~~~--~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~--P~~-----~~a~ 815 (854)
.|..+++. +-..+. .+.|. |. ...+. ++.||.+...+|++++|...+.....+. ++. ..+.
T Consensus 593 ~~~~~~ear~~~~~~~---~~~~~---~~---~~~~~-~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 593 LDLAEAEARLGIEVGS---VYTPQ---PL---LSRLA-LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HhhhhHHhhhcchhhh---hcccc---hh---HHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 11111100 000000 01121 22 22333 3799999999999999999999876553 321 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 003047 816 LTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 816 ~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.-..-+-+.+||.++|-..+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3333335589999999888876
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.31 E-value=16 Score=42.86 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=60.6
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-cHHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-PVLAARCF 466 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-~eeAl~~y 466 (854)
++++....+.-+|++++.+|+...|..+|+.++..-.. .+++. --.+.++|.+|..+...|. ..++..++
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d~--------w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK-RTEDL--------WAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcccc--------ccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 55444455555799999999999999999999875110 11111 1236799999999999999 99999999
Q ss_pred HHHHHhcCCC
Q 003047 467 QKSSLVFYKQ 476 (854)
Q Consensus 467 ~kAL~l~P~~ 476 (854)
.+|-.-..++
T Consensus 515 ~kAr~~~~dY 524 (546)
T KOG3783|consen 515 LKAREYASDY 524 (546)
T ss_pred HHHHhhcccc
Confidence 9998877654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.23 E-value=3.1 Score=44.12 Aligned_cols=109 Identities=14% Similarity=0.010 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc--c--CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR--T--EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~--~--dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
+..-+..|-.-.+|++|-.++.++.+- . .+=..+..+-..|.....+.++.++..+|+||...-.+-+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-------- 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-------- 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------
Confidence 344455566778888888888888851 0 1112345566678888899999999999999988732211
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
.+..+..-...+.-.+..-++++|+..|++++.+.-+.-+.
T Consensus 106 ---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 106 ---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred ---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH
Confidence 22223333345555667778999999999999988766543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.3 Score=53.77 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=81.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.-.+-.|.+++|++.+-+++.++ |.....+..++.++...++..+|+.-|..++. .+|+ .+.-|--.|..+..+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-in~D-sa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-INPD-SAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhc-cCcc-cccccchhhHHHHHhh
Confidence 334556789999999999999999 99999999999999999999999999999999 6774 3445555899999999
Q ss_pred CHHHHHHHHHHHHHh
Q 003047 408 KYHTSSVFLSKALSN 422 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~ 422 (854)
++.+|-++|+.+.++
T Consensus 197 ~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 197 NWEEAAHDLALACKL 211 (377)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999998
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.9 Score=46.96 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..+.||=.+|.+.++++.|+.+.+..|.+ .|.++.-+-..|.+|.++|.+..|..-|+..++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45677888999999999999999999998 34556777789999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 003047 474 YKQPLLWLRLA 484 (854)
Q Consensus 474 P~~~~aw~~La 484 (854)
|+.|.+-.-..
T Consensus 246 P~dp~a~~ik~ 256 (269)
T PRK10941 246 PEDPISEMIRA 256 (269)
T ss_pred CCchhHHHHHH
Confidence 99998754443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.3 Score=38.34 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 146 SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 146 ~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
...+.|+|.+....|++++|++.++++++..++..|......++
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45678999999999999999999999999999998875433333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.36 E-value=3.2 Score=38.85 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=67.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHhhhccCCCcc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRN-----------HRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~-----------~~kAl~~l~kal~~~dp~~~ 392 (854)
+++-++..|+.-+|++-++.++..+ +++. ..+...|.+++.... ..-|+++|.++.. ..| ..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h--~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp-~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH--GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP-DS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc--cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh-hH
Confidence 4677889999999999999999999 7776 455678999876553 3467888888877 567 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+..++.+|.=+....-|.++...-+++|.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666666666655555566666666666665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.44 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.++++||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4567888888888888888887763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.1 Score=44.65 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
-...+..+..+-...++.++++..+.-.--+.|..+.+....+|+++..|++.+|+++++. ...-|..|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 5667788889999999999999999998888999999999999999999999999999999 44444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=89.11 E-value=9.4 Score=43.93 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHH--HHHHHHHHHHHHHHHhh
Q 003047 24 LSVTATLAKEAALYFQSRK-FDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKL--LEALNNVKNKSEELARA 100 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~-y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~ 100 (854)
---+..|+..|-.+++.|+ =++|+.+++.++...+.|.+...- +..+.+.-|+++... ..-+-.+.+.+...
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~--- 450 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEV--- 450 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 4456778889999999999 889999999999999999877652 234444444433332 33344455555310
Q ss_pred hcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHH--HHHHHHhhcHHHHHHHHHHhhhccCC
Q 003047 101 TGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNI--AVIWFHLHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--a~~~~~~~~y~~A~~~~e~l~~~~~~ 178 (854)
|.+ .+ ...++..-.-+ |..+|.+|+|.+++-+=.=+.++-+.
T Consensus 451 ----------------------gl~-------------~i-~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS 494 (549)
T PF07079_consen 451 ----------------------GLT-------------PI-TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS 494 (549)
T ss_pred ----------------------CCC-------------cc-cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc
Confidence 000 11 11233333333 78899999999999988888885442
Q ss_pred CchhhHHHHHHHHHHHHHHccCHHHHHHH
Q 003047 179 IDETTALQICLLLLDVALACHDAFRSADV 207 (854)
Q Consensus 179 ~~e~~~~~~~l~l~~vy~~~~~~~kA~~~ 207 (854)
+ .++-++|-+.....+|.+|+++
T Consensus 495 ---~---~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 495 ---P---QAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred ---H---HHHHHHHHHHHHHhhHHHHHHH
Confidence 2 2477788999999999999953
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.7 Score=40.97 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=65.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.+-+..++.+++..-+..+--+. |..+..-+.-|.++..+|++.+|+.+|+.+.. ..| ..+.+--.+++|++.+|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCC-CChHHHHHHHHHHHHcCC
Confidence 44566789999999999998998 99999999999999999999999999999887 455 345555558888888877
Q ss_pred H
Q 003047 409 Y 409 (854)
Q Consensus 409 ~ 409 (854)
+
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 4
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.1 Score=48.56 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=61.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+.-..+.|+.++|...|+-||++ .|.+++++...|.....-++.-+|-.||-+||.+.|.+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 444456789999999999999999 3556788989999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 479 LWLRLA 484 (854)
Q Consensus 479 aw~~La 484 (854)
+..+.+
T Consensus 186 ALvnR~ 191 (472)
T KOG3824|consen 186 ALVNRA 191 (472)
T ss_pred HHhhhh
Confidence 887766
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.8 Score=39.15 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=46.1
Q ss_pred HHHHhcCHHHHHHHHHHhhhc----cCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 366 LEYARRNHRKAIKLLLALSNR----TEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~----~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
-....|+|.+|++.+.+.... ..+. ....++.+++.++...|++++|+..+++|+.+.++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345678888888888777752 1111 124677789999999999999999999999986543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.94 E-value=59 Score=37.73 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDP 61 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~ 61 (854)
|..+|+.....++|++|.+.|.++-+.....+
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~ 40 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSP 40 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch
Confidence 56789999999999999999999998766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.7 Score=47.23 Aligned_cols=52 Identities=13% Similarity=0.012 Sum_probs=36.6
Q ss_pred HhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 369 ARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..|+.++|.++|+.+++ ..|. ++.++..+|.+....++.-+|-.||-|||.+
T Consensus 128 ~~Gk~ekA~~lfeHAla-laP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA-LAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hccchHHHHHHHHHHHh-cCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 55777777777777777 5663 5667777777776666777777777777776
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=87.27 E-value=4.7 Score=38.24 Aligned_cols=63 Identities=24% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc-------CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLE-------LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~-------~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
++.|+-++-.+|+|.++|..+.++|. ...+...+-.-+....+.||-.+||.+||+..|+.+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 66778889999999999999999983 3455556656666778889999999999999999987
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.32 E-value=21 Score=36.27 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=75.3
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH-----HHHHHHHHHcC
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN-----NNLGCIYYQLA 407 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~-----nnLG~iy~~~g 407 (854)
+.++.++|+..++.+-+-+-|.--.-+.+..|.+..+.|+...|+..|..+-+ ..| .|.+. ..-+..+...|
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~--~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTS--IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCC--CcchhhHHHHHHHHHHHhccc
Confidence 44555556666555555541111122344455556666666666666665554 222 11111 11123333334
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
-|+.-..-.+. +..-.++.+..+-.-||.+-++.|++.+|...|.++.. +..-|+.-.+.+++.
T Consensus 147 sy~dV~srvep---------------La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 147 SYDDVSSRVEP---------------LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred cHHHHHHHhhh---------------ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 43332221111 11112445677777899999999999999999999877 666677666666665
Q ss_pred HH
Q 003047 488 LM 489 (854)
Q Consensus 488 i~ 489 (854)
..
T Consensus 211 ld 212 (221)
T COG4649 211 LD 212 (221)
T ss_pred HH
Confidence 53
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.24 E-value=1.7 Score=42.72 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
-......+..+-...++++++...+...--+.|+.+.+....+|++++.|++.+|+++++.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~ 69 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRE 69 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHh
Confidence 4555667777788899999999999988888899999999999999999999999999998
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.1 Score=50.25 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+...+.+-+-.+-.+|+..+|+.|+..++-...|.....++..||.+++++|...+|--.+.-|+...+-+
T Consensus 210 ~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~------- 282 (886)
T KOG4507|consen 210 TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF------- 282 (886)
T ss_pred chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc-------
Confidence 5544444444445558999999999999988744444556778889999999999999988887777752211
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
..-+|-+|.++.++|.+...+.+|..+.+..|..-..
T Consensus 283 ---------t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 283 ---------TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred ---------cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 1226778999999999999999999999999987544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.13 E-value=56 Score=35.56 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHHhCCCChhHH
Q 003047 19 DDSGVLSVTATLAKEAALYFQSR-KFDECLDLLKQLLDK----KPDD----------PKILHNIAIAEYFRDGCTDPKKL 83 (854)
Q Consensus 19 ~~~~~~~~~~~l~~~a~~~~~~g-~y~~Al~~l~~~l~~----~~~~----------~~~l~nla~~~~~~~~~~~~~~~ 83 (854)
+...+..-+.-++.-|...+.++ +|+.|...+++++++ .+.+ ..+++.++.++...+. +...
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~ 103 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDT---YESV 103 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCC---hHHH
Confidence 44566778888899999999999 999999999999987 2221 3678888877763332 3333
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHH
Q 003047 84 LEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYA 163 (854)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~ 163 (854)
.++...++-...+ ..+.++ ..+..+-+..- .++.+
T Consensus 104 ~ka~~~l~~l~~e------------------------------------------~~~~~~--~~~L~l~il~~-~~~~~ 138 (278)
T PF08631_consen 104 EKALNALRLLESE------------------------------------------YGNKPE--VFLLKLEILLK-SFDEE 138 (278)
T ss_pred HHHHHHHHHHHHh------------------------------------------CCCCcH--HHHHHHHHHhc-cCChh
Confidence 3333332222210 111122 23344444444 89999
Q ss_pred HHHHHHHHhhhccCCCchh
Q 003047 164 KALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 164 ~A~~~~e~l~~~~~~~~e~ 182 (854)
.+.+++.+++..+.-.+..
T Consensus 139 ~~~~~L~~mi~~~~~~e~~ 157 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHSESN 157 (278)
T ss_pred HHHHHHHHHHHhcccccch
Confidence 9999999999987644443
|
It is also involved in sporulation []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.01 E-value=11 Score=35.38 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 33 EAALYFQSRKFDECLDLLKQLLDKKPDDPK---ILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 33 ~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~---~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.|..+|.+|++-+|+++.+++....+++.. +.+.=|-+.+....-+ ++..-....+..+++..+.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t--en~d~k~~yLl~sve~~s~a~~L------ 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT--ENPDVKFRYLLGSVECFSRAVEL------ 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc--cCchHHHHHHHHhHHHHHHHhcc------
Confidence 478899999999999999999998887653 3333344433333212 22222444555555443221111
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCC
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~ 178 (854)
.|.-+..+|++|.=+-...-|.|+...-++.+.+..|
T Consensus 74 --------------------------------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 74 --------------------------------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred --------------------------------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 3445778888888888888888888888887775443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.86 E-value=3.7 Score=52.45 Aligned_cols=162 Identities=15% Similarity=0.013 Sum_probs=114.8
Q ss_pred CCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHhcC
Q 003047 299 GLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR------GKDSSLALFLKSQLEYARRN 372 (854)
Q Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~------~P~~~~a~~lla~ly~~~g~ 372 (854)
+.++|-++++|.-+-+.. ...+ .+-+++|-..++..+|+..-.+++-+.. +|+....+..++...+..++
T Consensus 955 ~~slnl~~~v~~~~h~~~---~~~~-~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEV---ASKY-RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred hhhhhHHHHhhhhcchhH---HHHH-HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence 456777777775542222 2222 3447788888888888887666655541 47778889999999999999
Q ss_pred HHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 373 HRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 373 ~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
...|+..+.+++.. ..| ..+...+|++.++..+++++.|+.+.+.|+.....+...+. -.....
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP-~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~--------l~~~~~ 1101 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHP-PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE--------LETALS 1101 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCC-chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc--------hhhhhH
Confidence 99999999998873 246 34667789999999999999999999999997433221111 122345
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
+..++..+...+.+..|+........++
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 5566777777777777777766666655
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.46 E-value=3.9 Score=42.95 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHHhcC--CCCC---HHHHHHHHHHHHHhcCH-------HHHHHHHHHhhhc-cCCC---ccHHHHHH
Q 003047 335 RNLKHAKREVKLAMNIAR--GKDS---SLALFLKSQLEYARRNH-------RKAIKLLLALSNR-TEMG---ISSMFNNN 398 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~--~P~~---~~a~~lla~ly~~~g~~-------~kAl~~l~kal~~-~dp~---~~a~~~nn 398 (854)
..+++|++.++-++-..+ +++. ...++-+|.+|-..|+. .+|++.|.++... ..|. +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 355666666666554442 1111 12334567777777774 4555666665552 1111 23566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+|.++.+.|++++|+.+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999999996
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.41 E-value=1.1e+02 Score=38.34 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---cC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD---------SSLALFLKSQLEYARRNHRKAIKLLLALSNR---TE 388 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------~~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~d 388 (854)
..+.+.++-....+.++.+|...+.++...- |. .....-+.|.+....|++++|+++...++.. ..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l--~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFL--KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHh--CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 3567777888888999999999998887766 43 2355678999999999999999999999984 12
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+.....++..+|.++.-.|++++|..+.+++.+..++
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 2234567778899999999999999999999998543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.81 E-value=73 Score=35.73 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCH-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDP-------KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~-------~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
+.+++.++.......++.+++..|.+++.. ...+. ....+++..+.-.++ ..++.+.+..++.-+..
T Consensus 4 ~~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~---~~~lr~li~~~Rpf~~~ 80 (411)
T KOG1463|consen 4 AASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD---AEELRDLITSLRPFLSS 80 (411)
T ss_pred hHHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHH
Confidence 345588888888889999999999999985 22222 234566655444443 33333344444433322
Q ss_pred HHhhhc-----------ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHH--------------
Q 003047 97 LARATG-----------EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLN-------------- 151 (854)
Q Consensus 97 ~~~~~~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-------------- 151 (854)
++.+.. ...+ +++|. .++-..+++-|-.
T Consensus 81 v~KakaaKlvR~Lvd~~~~~~-----------~~~~~----------------~i~l~~~cIeWA~~ekRtFLRq~Lear 133 (411)
T KOG1463|consen 81 VSKAKAAKLVRSLVDMFLKID-----------DGTGD----------------QIELCTECIEWAKREKRTFLRQSLEAR 133 (411)
T ss_pred hhhHHHHHHHHHHHHHHccCC-----------CCcch----------------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 211110 0000 00000 1111233333322
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hhhcccccCCCCCCcc
Q 003047 152 IAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEK-AFSVGCVNQVDSGSMG 229 (854)
Q Consensus 152 ~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek-~l~~~~~~~~~~~~~~ 229 (854)
+..+|+..++|.+|+.....+++.+..+||.. -+.+.++=..+|....+..||-..|.--.. +..+-+++
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-------- 205 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-------- 205 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH--------
Confidence 47789999999999999999999999999984 445556666888888998888655543331 22222221
Q ss_pred cchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhh
Q 003047 230 QQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALS---RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELS 306 (854)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (854)
|.|.+ .... .|+|+ .++..++-=|+.++- ++- ++
T Consensus 206 qlQa~------------------------lDLq-SGIlha~ekDykTafSYFyEAfE------gf~-----------s~- 242 (411)
T KOG1463|consen 206 QLQAT------------------------LDLQ-SGILHAAEKDYKTAFSYFYEAFE------GFD-----------SL- 242 (411)
T ss_pred HHHHH------------------------HHHh-ccceeecccccchHHHHHHHHHc------ccc-----------cc-
Confidence 22211 1111 13333 345555556666641 000 01
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHH
Q 003047 307 RTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKH--AKREVKLAMNIARGKDSSLALFLKSQLEY--ARRNHRKAIKLLLA 382 (854)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~--A~~elk~al~~~~~P~~~~a~~lla~ly~--~~g~~~kAl~~l~k 382 (854)
++. ..--..+.+. -.+-++.+..++ ++-.-|.++... ..+.+++-..|..+. ...+|++|+.-|..
T Consensus 243 ------~~~-v~A~~sLKYM-lLcKIMln~~ddv~~lls~K~~l~y~--g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 243 ------DDD-VKALTSLKYM-LLCKIMLNLPDDVAALLSAKLALKYA--GRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred ------CCc-HHHHHHHHHH-HHHHHHhcCHHHHHHHHhhHHHHhcc--CcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 010 0111112111 122233444443 555556677766 777888888888877 45689999999998
Q ss_pred hhhccCCCccHHHHHHHHHHHH
Q 003047 383 LSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 383 al~~~dp~~~a~~~nnLG~iy~ 404 (854)
-+. .|| .+.-.+...|-
T Consensus 313 eL~-~D~----ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 313 ELA-EDP----IVRSHLQSLYD 329 (411)
T ss_pred HHh-cCh----HHHHHHHHHHH
Confidence 888 566 23333555553
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.27 E-value=14 Score=43.75 Aligned_cols=143 Identities=15% Similarity=-0.021 Sum_probs=98.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFL--KSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~l--la~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
.+...+.-..++..+..-+.++ |.++..++. +...+...+....++-.+..++. .+|. ++.++.|||......|
T Consensus 40 ~l~~~~~~~~~~~a~~~~~~~~--~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~L~~ale~~~ 115 (620)
T COG3914 40 WLNAEGLQALAIYALLLGIAIN--DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLS-VNPE-NCPAVQNLAAALELDG 115 (620)
T ss_pred HhcccCchhHHHHHHHccCccC--CCCHHHHHHHHHHhhccccccchhHHHHHhhhHh-cCcc-cchHHHHHHHHHHHhh
Confidence 3333344343666666666677 888877543 58888889999889888888888 6884 6778999988887777
Q ss_pred CHHHHHHHHHH-HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 408 KYHTSSVFLSK-ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 408 ~~~eAi~~f~k-AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....++..+.. +....+....- .. ....+|.+|..+-.+|+..++.....++..+.|.++++...+.-.
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~---------~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEF---------LG-HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHH---------Hh-hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 76666666655 66652211000 00 111233469999999999999999999999999998765555433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=84.23 E-value=46 Score=37.82 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=72.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKD-SSLALFLKSQL-EYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGC 401 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~-~~~a~~lla~l-y~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~ 401 (854)
..+...+.|-+..|++-.|-++.++ |. |+-...+.=+. -...++|+==+++++......... .-+..-+.++.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLD--PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 3778889999999999999999999 98 77665544444 446777877788777765410110 01234556888
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhchh
Q 003047 402 IYYQLAKY---------------HTSSVFLSKALSNSAS 425 (854)
Q Consensus 402 iy~~~g~~---------------~eAi~~f~kAL~~~~~ 425 (854)
+++.+++. ++|-..+.+|+...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 99999998 8999999999998654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.15 E-value=3.5 Score=37.15 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDV 194 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~v 194 (854)
+|++....|.+|..+...|+|++|++.+..+++.-+..++..+.+.++-+..+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 67788899999999999999999999999999987776665555554444333
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.90 E-value=33 Score=37.10 Aligned_cols=147 Identities=8% Similarity=-0.052 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHhhhccCCCcc
Q 003047 314 ISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLE-YARRNHRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 314 ~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly-~~~g~~~kAl~~l~kal~~~dp~~~ 392 (854)
+++++|+....++|+-+... ..-..|+.-...++.++ |.|-..+...=.+. ....+..+-++++..++. ..|. +
T Consensus 37 ~Yte~fr~~m~YfRAI~~~~-E~S~RAl~LT~d~i~lN--pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e-~npK-N 111 (318)
T KOG0530|consen 37 AYTEDFRDVMDYFRAIIAKN-EKSPRALQLTEDAIRLN--PANYTVWQYRRVILRHLMSDLNKELEYLDEIIE-DNPK-N 111 (318)
T ss_pred eechhHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhC--cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hCcc-c
Confidence 34567777777776644333 33455777777777777 77766654433333 244456666677777666 5663 4
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYH-TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~-eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
-.+|...-.+....|++. .=++..+++|.. ..++.-+|-..-=+....+.++.-+.+..+.|+
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~----------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDD----------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhc----------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666666666666666 556666666664 123445666555566666666666666666666
Q ss_pred hcCCCHHHHH
Q 003047 472 VFYKQPLLWL 481 (854)
Q Consensus 472 l~P~~~~aw~ 481 (854)
.+--|-.+|.
T Consensus 176 ~Di~NNSAWN 185 (318)
T KOG0530|consen 176 EDIRNNSAWN 185 (318)
T ss_pred Hhhhccchhh
Confidence 5555555553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.42 E-value=90 Score=35.69 Aligned_cols=123 Identities=13% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH---
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY--- 404 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~--- 404 (854)
+.+-.-.|+-..|.+--++.-++-.--..+-.+++-++.-+..|+|+.|-+-|+..+. +|. .-+..|-++|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~--dPE---tRllGLRgLyleAq 165 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD--DPE---TRLLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc--ChH---HHHHhHHHHHHHHH
Confidence 3444456676667666666553330013355667889999999999999999999987 663 33444544453
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
+.|.++.|+.|-.++-...+++ .=++...=......|+++.|++..+....
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l----------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQL----------------PWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCC----------------chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6899999999999998874433 22333344567889999999998876554
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=83.35 E-value=4.4 Score=46.48 Aligned_cols=122 Identities=18% Similarity=0.112 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHHhhhc----cCCCccH-------HHHHHHHHHHHHc
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEY--ARRNHRKAIKLLLALSNR----TEMGISS-------MFNNNLGCIYYQL 406 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~--~~g~~~kAl~~l~kal~~----~dp~~~a-------~~~nnLG~iy~~~ 406 (854)
..+|+..+.+.+ |+-...+-.+..++- .+.+..+-++........ .+....+ ..+..|-.+|.-+
T Consensus 58 ~~~e~~~l~~~~--~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LL 135 (404)
T PF10255_consen 58 TEEEIQLLKENN--PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLL 135 (404)
T ss_pred CHHHHHHHHhhc--cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhc
Confidence 357777777776 776666555544443 455566666655553210 1111111 1222345688899
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
|+|..|++.++-. .+.+ .. +......-...++|.+|.+|++++||.+|+++|..+|-
T Consensus 136 GDY~~Alk~l~~i-dl~~-----~~--l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENI-DLNK-----KG--LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhcc-Cccc-----ch--hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998765442 1100 00 00111223457899999999999999999999998774
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.87 E-value=8.9 Score=37.88 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=61.2
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
.-+...+++++..-+..+--+- |+.+..-+.-|.++...|++.+|+.++..+.. ..+ ..+..--.++.|++.+|+.
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~-~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS-SAG-APPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc-cCC-CchHHHHHHHHHHHhcCCh
Confidence 3445889999999998888888 99999999999999999999999999999988 444 2344444467777777664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.82 E-value=5.2 Score=35.14 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhch
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG---CIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG---~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
-.+..|.-++...+.++|+..+.+++++ -++ .+.-+.-+| .+|...|+|.+.+.+--+=+.+..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k-~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEK-ITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhh-cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777899999999999999984 332 233444444 477889999999888777666643
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.70 E-value=6.7 Score=40.66 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
..++|.+.+-.+-...+ =++++.++.+|..|. ..+.+||+.+|.+++.. .+...++.++..|+.+|.++|++++|-
T Consensus 121 ~d~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34557766655544442 367888888988776 78999999999999985 221246889999999999999999884
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=82.09 E-value=28 Score=42.21 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=43.5
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
+..+++++|+.-++.+-... .-..++-..++-|...|+|+-|.++|.++-. ++.--..|-+.|++..
T Consensus 743 i~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWED 809 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHH
Confidence 34455555555554443332 2345667788888888888888888876422 1112244667777777
Q ss_pred HHHHHHH
Q 003047 412 SSVFLSK 418 (854)
Q Consensus 412 Ai~~f~k 418 (854)
|.+.-.+
T Consensus 810 a~kla~e 816 (1636)
T KOG3616|consen 810 AFKLAEE 816 (1636)
T ss_pred HHHHHHH
Confidence 6554333
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.4 Score=30.63 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHCCCcHHHHHH--HHHHHHhcCCC
Q 003047 444 LITYNCGLQYLACGKPVLAARC--FQKSSLVFYKQ 476 (854)
Q Consensus 444 ~~~~nLG~~ll~~Gk~eeAl~~--y~kAL~l~P~~ 476 (854)
+.|+.+|..+...|++++|++. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5688899999999999999999 55888888764
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.51 E-value=1.7 Score=45.62 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH-HHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL-LWL 481 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~-aw~ 481 (854)
..+.++.+.|.+.|.+||.. .+.....|+.+|....+.|+.+.|...|++.++++|++-. +-.
T Consensus 5 ~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred hcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 34678999999999999998 4566789999999999999999999999999999998633 334
Q ss_pred HHH
Q 003047 482 RLA 484 (854)
Q Consensus 482 ~La 484 (854)
+|+
T Consensus 69 kLa 71 (287)
T COG4976 69 KLA 71 (287)
T ss_pred hHH
Confidence 443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.88 E-value=1.9 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHH
Q 003047 147 VAKLNIAVIWFHLHEYAKALSVLEP 171 (854)
Q Consensus 147 ~~~~n~a~~~~~~~~y~~A~~~~e~ 171 (854)
...+++|.++..+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567888888888888888887753
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=80.64 E-value=8.7 Score=48.74 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
+...+.......|+.|+..|.++-. .-|+ ..-.+...+|.....+-+-..--.-|.+||..+..+..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRE-SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG---------- 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhh-cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC----------
Confidence 3456778888999999999999887 5553 22356677888776542222222455666655433221
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL-------WLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a-------w~~La~~~i 488 (854)
.+.-+.-|.-.+.+|..+|+|+|-++||.-|++.+|++|.+ -+||=++..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY 604 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Confidence 12234456678899999999999999999999999999865 445555555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.45 E-value=15 Score=38.05 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=64.2
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
.+..+-+-++|.+.|.++-.. ..-..+.....||.+|. ..+.++|+..+.++|.+.. .+ ...++++
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~--------~~~n~ei 180 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PD--------DNFNPEI 180 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CC--------CCCCHHH
Confidence 345666788999999888762 22234677888888886 5678999999999999832 11 1346789
Q ss_pred HHHHHHHHHHCCCcHHHH
Q 003047 446 TYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl 463 (854)
+..|+.+++.+|+++.|.
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 999999999999999985
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.44 E-value=6.1 Score=34.70 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 665 VELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
=+....+...|+...+++|. .++.++.+..||.+ ..|++..|++.+.+.+--+-+
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l--~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYL--IQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999997 67767777777765 458999999999999987766
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.30 E-value=3.6 Score=44.42 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
-..+.-|+=.++...++++.|..+..+.+.++|.+++-+.-.+.++.++|-..-|++-+.. .++.|.+|.-
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 5667788999999999999999999999999999999999999999999999999999999 9999998853
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.18 E-value=12 Score=44.79 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
+...|--++...+|..+++.|...+.. ......+...-+|.++|..+.+.+.|.+++++|=+.+|
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~----------- 425 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR----------- 425 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-----------
Confidence 345566677778888888888877762 11112345556678888888888888888888777632
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
..+..-+..--+...-|+-++|+.|..+...+.-+
T Consensus 426 -----~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 426 -----QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -----ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 22233333445556677777888777777665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.8 bits (227), Expect = 5e-19
Identities = 108/635 (17%), Positives = 199/635 (31%), Gaps = 183/635 (28%)
Query: 274 ETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL 333
ED V ++ Q++ + + LS E+ ++ + + ++ + LL
Sbjct: 23 SVFEDAFVDNFDCKDV--QDMPKSI-LSKEEIDHIIMSKDAVS-------GTLRLFWTLL 72
Query: 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS 393
++ + V+ + + FL S ++ +R ++ + +R
Sbjct: 73 SKQ----EEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQRDR------- 118
Query: 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453
++N+N AKY+ S + L + L + +P K + G+
Sbjct: 119 LYNDN-----QVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLI-----------DGV-- 158
Query: 454 LACGKPVLAAR-CFQKSSLVFYKQPLLWLRLAECC--------LMALEKGLVAPGRSLSD 504
L GK +A C + WL L C L L + S SD
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 505 GSE---VKVHVIGKGKWRYLVMEDGFRKNG-----HVDSPE---------------KDDS 541
S +++H I + + R L+ + +N +V + + +
Sbjct: 219 HSSNIKLRIHSI-QAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 542 ---SLGSDGQPKLSMPLARQCLL--NALHLL-NYPDLNYSKFGLPSN---------SSVE 586
L + +S+ L LL Y L+ LP S +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIA 334
Query: 587 ESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG-TSLEVIQNS------ 639
ES A+ N H + L + I L + + + + L V S
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL----EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 640 -LSY------YEDVCRRENQMIKQALLA----NLAY----VELEMENPVKALAAA-RSLL 683
LS DV N++ K +L+ + LE++ ++ A RS++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 684 E-------------LPDCSRIYIF--LG-HIYAAEALCLLNRPKEAAEHFSM-YLSGGDN 726
+ +P Y + +G H+ E E F M +L +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-------HPERMTLFRMVFL----D 499
Query: 727 FDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKN----------------PSPEDSRDTM- 769
F + +KI + N P E + +
Sbjct: 500 FR----------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 770 -F-PKPEE----ARGTLYVNIAAMFAMQGEFERAH 798
F PK EE ++ T + IA M + FE AH
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 1e-14
Identities = 100/615 (16%), Positives = 185/615 (30%), Gaps = 204/615 (33%)
Query: 16 SGEDDSGVLSVTATL-AKEAALYFQSRKFDECLDL----LKQLLDKKPDDPKILHNIAIA 70
S + SG L + TL +K+ + + +E L + L + + P + +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMY 112
Query: 71 EYFRDG-CTDPKKL-------LEALNNVKNKSEELARATGEQTEGGGNIGSKVGL-GSKG 121
RD D + L+ ++ EL A V + G G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN------------VLIDGVLG 160
Query: 122 SGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEP---LYQNIEP 178
SG A + V + + V K++ + W +L +VLE L I+P
Sbjct: 161 SG---KTWVALD----VCLS-YKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 179 ---------------IDETTA----------LQICLLLLD-VALACHDAFRSADVLIYLE 212
I A + CLL+L V ++A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------QNAKAW---- 259
Query: 213 KAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDL---AATVNASENALSR 269
AF++ C ++ LL +T +D A T + S + S
Sbjct: 260 NAFNLSC--KI-----------LL----------TTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 270 TLSE-ETLEDDTVLALSSLEISGQNLTR------PVGLS------SNELSR--------- 307
TL+ E L L L+ Q+L R P LS + L+
Sbjct: 297 TLTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 308 ----TLVDRSISTVDLKLKLQLYKVRFLLLTRNLK------------HAKREVKLAMN-- 349
T+++ S++ ++ +++ R + + K +V + +N
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 350 -----IARGKDS------SLALFLKSQLEYARRNHRKAI---KLLLALSNRTEMGISSMF 395
+ + S+ L LK +LE HR + + + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----- 466
Query: 396 NNNLGCIYYQLAKYHTSSV-----------------FLSKALSNSASLRKDKPLKLLTFS 438
Y + +H ++ FL + + + ++ L T
Sbjct: 467 PYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP---LLWLRLAECCLMALEKGL 495
Q L Y Y+ P + L F + L + L L L
Sbjct: 526 Q----LKFYK---PYICDNDPKYERLV--NAILDFLPKIEENL--ICSKYTDL--LRIAL 572
Query: 496 VAPGRSLSDGSEVKV 510
+A ++ + + +V
Sbjct: 573 MAEDEAIFEEAHKQV 587
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLS 417
+ + + A + +KA L+ + +R E F + YY + + + S +
Sbjct: 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAE---FFFKMSESYYYMKQTYFSMDYAR 167
Query: 418 KALSNSASLRKDKPLKLLTFSQDKSLLITYNC-GLQYLACGKPVLAARCFQKS 469
+A LL ++ +L + A FQK+
Sbjct: 168 QAYEIYKEHEAYNI----------RLLQCHSLFATNFLDLKQYEDAISHFQKA 210
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 19/189 (10%)
Query: 657 ALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIFLGHIYAAEALCLLNRPKEAAE 715
A V L M AL +++L D + + GH+ + EA +
Sbjct: 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-----QGKLDEAED 115
Query: 716 HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTM------ 769
F L + + + + + +++ + A + + +
Sbjct: 116 DFKKVLKSNPSENEEKEAQS-QLIKSDEMQRL--RSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 770 FPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQ 829
E A F +GE +A + A + +TEA + LG +
Sbjct: 173 CVWDAEL----RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 830 EALAKLKYC 838
+L++++ C
Sbjct: 229 LSLSEVREC 237
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLS 417
+ F + + A +R+A K L +S+ E F+ + YY + + H S +
Sbjct: 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAE---FHFKVAEAYYHMKQTHVSMYHIL 165
Query: 418 KALSNSASLRKDKPLKLLTFSQDKSLLITYNC-GLQYLACGKPVLAARCFQKS 469
+AL + + + Y A + +
Sbjct: 166 QALDIYQNHPLYS----------IRTIQSLFVIAGNYDDFKHYDKALPHLEAA 208
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 854 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.87 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.87 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.87 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.86 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.86 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.83 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.8 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.8 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.75 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.72 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.72 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.69 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.69 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.69 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.61 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.57 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.56 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.55 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.51 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.48 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.47 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.46 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.45 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.44 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.43 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.42 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.37 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.34 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.34 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.33 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.31 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.3 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.26 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.24 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.2 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.17 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.13 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.03 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.01 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.0 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.98 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.79 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.79 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.76 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.73 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.68 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.26 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.98 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.4 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.31 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.68 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.36 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.29 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.37 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.25 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.1 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.42 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.11 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.99 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 88.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.4 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.57 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.33 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 85.53 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.32 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.78 | |
| 1wfd_A | 93 | Hypothetical protein 1500032H18; MIT domain, struc | 81.03 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 80.68 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.18 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=311.99 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
..|..+++.|+|++|++.|+++++.+|+++.++..++.+++..+. +.++...+.+++..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~a~~~--------------- 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR------LDRSAHFSTLAIKQ--------------- 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---------------
Confidence 468899999999999999999999999999999999988775443 34455555555531
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL 191 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l 191 (854)
+|.++..|+++|.+|...|+|++|+++|+++++..+...+ +++.+
T Consensus 63 ------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l 107 (388)
T 1w3b_A 63 ------------------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID-----GYINL 107 (388)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHH
T ss_pred ------------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH-----HHHHH
Confidence 4567778888999999999999999988888874333222 35556
Q ss_pred HHHHHHccCHHHHH
Q 003047 192 LDVALACHDAFRSA 205 (854)
Q Consensus 192 ~~vy~~~~~~~kA~ 205 (854)
+.+|...|++++|+
T Consensus 108 ~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 108 AAALVAAGDMEGAV 121 (388)
T ss_dssp HHHHHHHSCSSHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 66666666666665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=297.72 Aligned_cols=369 Identities=19% Similarity=0.127 Sum_probs=305.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCccc
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQ 230 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~ 230 (854)
.+|..++..|+|++|+++|+++++..+...+ +++.++.++...|++++|+ .++++++... +..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~a~---~~~~~a~~~~----p~~----- 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTG-----VLLLLSSIHFQCRRLDRSA---HFSTLAIKQN----PLL----- 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----TTC-----
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHH---HHHHHHHhcC----CCc-----
Confidence 3688999999999999999999995444322 5777889999999999998 4667766542 110
Q ss_pred chhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhh
Q 003047 231 QSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLV 310 (854)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (854)
T Consensus 67 -------------------------------------------------------------------------------- 66 (388)
T 1w3b_A 67 -------------------------------------------------------------------------------- 66 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 311 ~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
.......+.+|...|++++|++.+++++.++ |+++.+++.+|.++...|++++|++.|++++. .+|+
T Consensus 67 ----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~ 133 (388)
T 1w3b_A 67 ----------AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPD 133 (388)
T ss_dssp ----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTT
T ss_pred ----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Confidence 0123335677888999999999999999999 99999999999999999999999999999999 7885
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
...++.++|.+|..+|++++|+.+|++++.. .|....+|+++|.++...|++++|+.+|++++
T Consensus 134 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 134 -LYCVRSDLGNLLKALGRLEEAKACYLKAIET----------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp -CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999999999998 34567899999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
.++|+++.+|..+|.++. ..+
T Consensus 197 ~~~p~~~~~~~~lg~~~~---~~~-------------------------------------------------------- 217 (388)
T 1w3b_A 197 TLDPNFLDAYINLGNVLK---EAR-------------------------------------------------------- 217 (388)
T ss_dssp HHCTTCHHHHHHHHHHHH---TTT--------------------------------------------------------
T ss_pred hcCCCcHHHHHHHHHHHH---HcC--------------------------------------------------------
Confidence 999999999999998877 210
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
.++.|..+|++|+.+.|...
T Consensus 218 -~~~~A~~~~~~al~~~p~~~----------------------------------------------------------- 237 (388)
T 1w3b_A 218 -IFDRAVAAYLRALSLSPNHA----------------------------------------------------------- 237 (388)
T ss_dssp -CTTHHHHHHHHHHHHCTTCH-----------------------------------------------------------
T ss_pred -CHHHHHHHHHHHHhhCcCCH-----------------------------------------------------------
Confidence 12559999999999988743
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCC
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNR 709 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr 709 (854)
.++..+|.++...|++.+|+.++++++. .|..+.++..+|.+| +..|+
T Consensus 238 --------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~ 286 (388)
T 1w3b_A 238 --------------------------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-----KEKGS 286 (388)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH-----HHHSC
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HHcCC
Confidence 1245678889999999999999999987 778888887777744 46799
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHH
Q 003047 710 PKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFA 789 (854)
Q Consensus 710 ~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~ 789 (854)
+++|+.+|++++. .+ |. .+..+.++|.++.
T Consensus 287 ~~~A~~~~~~al~--~~--------------------------------------p~----------~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 287 VAEAEDCYNTALR--LC--------------------------------------PT----------HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHH--HC--------------------------------------TT----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hC--------------------------------------cc----------cHHHHHHHHHHHH
Confidence 9999999999883 11 22 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 790 MQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 790 ~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.+|++++|++++++++++.|+++.++..++.++.+.|++++|+..+++ .+..|..+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 999999999999999999999988899999999999999999999988 665565543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=303.23 Aligned_cols=484 Identities=13% Similarity=0.053 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.+..+...+..++..|+|++|+.+|++++...|+ ...++.++.+++..++ +.+++..+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~---------- 145 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGD------YARAKCLLTKEDL---------- 145 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTC------HHHHHHHHHHTCG----------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCc------HHHHHHHHHHHhc----------
Confidence 4556677788889999999999999999999994 4778889988775543 3345555554331
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCC-------
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP------- 178 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~------- 178 (854)
.+.+...++.++.+|...|++++|+++|+++......
T Consensus 146 ------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 146 ------------------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp ------------------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred ------------------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 2335668999999999999999999999864332100
Q ss_pred ----CchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 179 ----IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 179 ----~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
........+++.++.+|...|++++|+. .|++++... ++.
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~----p~~----------------------------- 233 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE---CYKEALMVD----AKC----------------------------- 233 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHC----TTC-----------------------------
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhC----chh-----------------------------
Confidence 0001123468889999999999999985 567776553 111
Q ss_pred hhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH
Q 003047 255 DLAATVNASENALSRTLSEET------LEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV 328 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~ 328 (854)
...+... ..+....+... +.|.... .........+....+
T Consensus 234 --~~~~~~l-~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 234 --YEAFDQL-VSNHLLTADEEWDLVLKLNYSTYS-------------------------------KEDAAFLRSLYMLKL 279 (597)
T ss_dssp --HHHHHHH-HHTTCSCHHHHHHHHHHSCTHHHH-------------------------------GGGHHHHHHHHHTTS
T ss_pred --hHHHHHH-HHhhcccchhHHHHHHhcCCcccc-------------------------------cchHHHHHHHHHHHH
Confidence 0001100 00000000000 0011110 001111122222235
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
..|...|++++|++.+++++.. |.+..+++.+|..|...|++++|+++|++++. .+|. ...+++.++.+|...|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-IDPY-NLDVYPLHLASLHESGE 354 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CCTTHHHHHHHHHHHTC
T ss_pred HHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cCcc-cHHHHHHHHHHHHHhCC
Confidence 5667789999999999998876 67899999999999999999999999999998 6774 45688899999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+..|++++.. .+....+++.+|.+|...|++++|+++|++++.+.|+++.+|..++.++.
T Consensus 355 ~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 355 KNKLYLISNDLVDR----------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418 (597)
T ss_dssp HHHHHHHHHHHHHH----------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999987 34567899999999999999999999999999999999999999999888
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
. .+ .+++|..+|++++.+.|
T Consensus 419 ~---~g---------------------------------------------------------~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 419 I---EG---------------------------------------------------------EHDQAISAYTTAARLFQ 438 (597)
T ss_dssp H---HT---------------------------------------------------------CHHHHHHHHHHHHHTTT
T ss_pred H---cC---------------------------------------------------------CHHHHHHHHHHHHHhCc
Confidence 3 20 24779999999998877
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
...
T Consensus 439 ~~~----------------------------------------------------------------------------- 441 (597)
T 2xpi_A 439 GTH----------------------------------------------------------------------------- 441 (597)
T ss_dssp TCS-----------------------------------------------------------------------------
T ss_pred cch-----------------------------------------------------------------------------
Confidence 633
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
.++..++.++...|++.+|+.++++++. .|.++..+..+|.+| +..|++++|+.+|++++. ..
T Consensus 442 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~--~~- 505 (597)
T 2xpi_A 442 --------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA-----FNKSDMQTAINHFQNALL--LV- 505 (597)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HH-
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHhCCHHHHHHHHHHHHH--hh-
Confidence 1245678899999999999999999997 888898998888755 478999999999999983 10
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|. .+..|+. .+.++.++|.++...|++++|++.+++++++
T Consensus 506 -------------------------------------~~--~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 506 -------------------------------------KK--TQSNEKP-WAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -------------------------------------HH--SCCCSGG-GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------------------hc--cccchhh-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 00 0011111 3788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 808 LPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 808 ~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.|+++.++..++.++.+.|++++|...+++ ....|.++.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999999999999999999999998 555566554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=283.61 Aligned_cols=465 Identities=13% Similarity=0.062 Sum_probs=335.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
...+..++..|..++..|+|++|+..|+++++.+| ++.+++++|.+++..++ +.+++..+.+.+..
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~------- 68 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGD------LKKVVEMSTKALEL------- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHH-------
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhh------HHHHHHHHHHHhcc-------
Confidence 35688999999999999999999999999999999 79999999999886643 55677777777741
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
+|++..+++++|.+|..+|+|++|+.+|++++...+......
T Consensus 69 --------------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 110 (514)
T 2gw1_A 69 --------------------------------------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110 (514)
T ss_dssp --------------------------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGT
T ss_pred --------------------------------------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchH
Confidence 456778999999999999999999999999999654433332
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
. .++..+.......++...+..++++.......... ++ . .........| . .
T Consensus 111 ~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~---~-------~-------- 161 (514)
T 2gw1_A 111 E-----PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ----PA-K-ERKDKQENLP---S-------V-------- 161 (514)
T ss_dssp H-----HHHHHHHHHHHHHHHTTC---------------------------------CCC---C-------H--------
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC----hh-h-HHHhhccCCc---h-------h--------
Confidence 1 11222222222333333233333222110000000 00 0 0000000000 0 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH---hcCHHHH
Q 003047 264 ENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL---TRNLKHA 340 (854)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~---~~~~~~A 340 (854)
.....+...+ ...+... .+ . .+ ......+.++.+++. .|++++|
T Consensus 162 ---------~~~~~~~~~~---~~~~~~~-----------~~-----~-~~----~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 162 ---------TSMASFFGIF---KPELTFA-----------NY-----D-ES----NEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp ---------HHHHHHHTTS---CCCCCCS-----------SC-----C-SS----CHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred ---------HHHHHHHhhc---CHHHHHH-----------Hh-----c-CC----cHHHHHHHHHHHHHHhhhhccHHHH
Confidence 0000000000 0000000 00 0 00 112345566777776 8999999
Q ss_pred HHHHHHHHH-----h--c-C----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 341 KREVKLAMN-----I--A-R----GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 341 ~~elk~al~-----~--~-~----~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
++.+++++. + . . .|.++.+++.+|.++...|++++|+++|++++. .+|. ..++..+|.+|...|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCC--HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCcc--HHHHHHHHHHHHHCCC
Confidence 999999999 6 3 0 044567889999999999999999999999999 7885 7899999999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++.
T Consensus 286 ~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 286 STEYYNYFDKALKL----------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp CTTGGGHHHHHHTT----------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 99999999999997 23456789999999999999999999999999999999999999998766
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
.. ..++.|..+|++++.+.|
T Consensus 350 ---~~---------------------------------------------------------~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 350 ---RE---------------------------------------------------------NKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp ---TT---------------------------------------------------------TCHHHHHHHHHHHHHHST
T ss_pred ---Hc---------------------------------------------------------CCHHHHHHHHHHHHHHcc
Confidence 21 024779999999999887
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
...
T Consensus 370 ~~~----------------------------------------------------------------------------- 372 (514)
T 2gw1_A 370 EAP----------------------------------------------------------------------------- 372 (514)
T ss_dssp TCS-----------------------------------------------------------------------------
T ss_pred cCH-----------------------------------------------------------------------------
Confidence 743
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChH------HHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSR------IYIFLGHIYAAEALCL---LNRPKEAAEHFS 718 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~------~~~~la~lY~aeAl~~---lgr~~eAl~~l~ 718 (854)
.++..+|.++...|++.+|+.++++++. .|..+. .+..+|. ++.. .|++++|+.+++
T Consensus 373 --------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 373 --------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT-----LLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH-----HHHTSCCTTHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH-----HHhhhhhcCCHHHHHHHHH
Confidence 1255778999999999999999999997 555543 7766666 5557 899999999999
Q ss_pred hhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHH
Q 003047 719 MYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAH 798 (854)
Q Consensus 719 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~ 798 (854)
+++. .+ |. .+.+++++|.++..+|++++|.
T Consensus 440 ~a~~--~~--------------------------------------~~----------~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 440 KASK--LD--------------------------------------PR----------SEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHH--HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH--hC--------------------------------------cc----------cHHHHHHHHHHHHHhcCHHHHH
Confidence 9993 11 22 4678899999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 003047 799 HFVTQALSILPRSTEATLTAIYV 821 (854)
Q Consensus 799 ~~~~~Al~~~P~~~~a~~l~~y~ 821 (854)
..+++++++.|+++.++..+.+.
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHH
Confidence 99999999999998877766555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=285.22 Aligned_cols=465 Identities=15% Similarity=0.091 Sum_probs=327.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
....+..++..|..++..|+|++|++.|++++..+|+++.+++++|.+++..+ ++.+++..+.+.+..
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG------DLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC------CHHHHHHHHHHHHhc------
Confidence 34568899999999999999999999999999999999999999999988665 355688888887741
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~ 182 (854)
+|++...++++|.+|..+|+|++|++.|+ .+...+...+.
T Consensus 89 ---------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 89 ---------------------------------------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp ---------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred ---------------------------------------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 46678899999999999999999999996 66533332221
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhh
Q 003047 183 TALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNA 262 (854)
Q Consensus 183 ~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (854)
.+..+...+...+|+ ..+++.+...... ... ..|+.. ....+.
T Consensus 129 --------~~~~~~~~~~~~~a~---~~~~~~l~~~~~~-~~~---------------~~~~~~--------~~~~~~-- 171 (537)
T 3fp2_A 129 --------SIEPMLERNLNKQAM---KVLNENLSKDEGR-GSQ---------------VLPSNT--------SLASFF-- 171 (537)
T ss_dssp -----------CHHHHHHHHHHH---HHHHHHCC--------C---------------CCCCHH--------HHHHHH--
T ss_pred --------HHHHHHHHHHHHHHH---HHHHHHHHhCccc-ccc---------------ccchHh--------HHHHHH--
Confidence 133444555667776 4556665542000 000 000000 000000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHH
Q 003047 263 SENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKR 342 (854)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~ 342 (854)
.. .........+... .. ...........++..+.. .........+++++|+.
T Consensus 172 --~~--~~~~~~~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~--------------~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 172 --GI--FDSHLEVSSVNTS---------SN-YDTAYALLSDALQRLYSA--------------TDEGYLVANDLLTKSTD 223 (537)
T ss_dssp --HT--SCHHHHHHTSCCC---------CS-SCSSHHHHHHHHHHHHTC--------------SHHHHHHHHHHHHHHHH
T ss_pred --Hh--cChHHHHHHHhhc---------cc-cccHHHHHHHHHHHHHHh--------------hhhhhHHHHHHHHHHHH
Confidence 00 0000000000000 00 000000000111111100 01233344578899999
Q ss_pred HHHHHHHhcCCCCCHH-------HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 343 EVKLAMNIARGKDSSL-------ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVF 415 (854)
Q Consensus 343 elk~al~~~~~P~~~~-------a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~ 415 (854)
.+++++... |+++. +++.+|.++...|++++|+++|++++. .+|. ..++..+|.+|...|++++|+.+
T Consensus 224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPT--PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC--HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCC--chHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999 99966 577889999999999999999999999 7884 67899999999999999999999
Q ss_pred HHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 003047 416 LSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGL 495 (854)
Q Consensus 416 f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~ 495 (854)
|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++. ..+
T Consensus 299 ~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~g- 358 (537)
T 3fp2_A 299 FQKAVDL----------------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY---KQG- 358 (537)
T ss_dssp HHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH---HTT-
T ss_pred HHHHhcc----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcC-
Confidence 9999998 34467899999999999999999999999999999999999999999988 210
Q ss_pred cCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc
Q 003047 496 VAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS 575 (854)
Q Consensus 496 ~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~ 575 (854)
.++.|..+|++++.+.|....
T Consensus 359 --------------------------------------------------------~~~~A~~~~~~~~~~~~~~~~--- 379 (537)
T 3fp2_A 359 --------------------------------------------------------KFTESEAFFNETKLKFPTLPE--- 379 (537)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHCTTCTH---
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHhCCCChH---
Confidence 247799999999999887431
Q ss_pred ccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH
Q 003047 576 KFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655 (854)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 655 (854)
T Consensus 380 -------------------------------------------------------------------------------- 379 (537)
T 3fp2_A 380 -------------------------------------------------------------------------------- 379 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHH-HHHHHHHHHhc----------CCHHHHHHHHHhhhcC
Q 003047 656 QALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLG-HIYAAEALCLL----------NRPKEAAEHFSMYLSG 723 (854)
Q Consensus 656 ~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la-~lY~aeAl~~l----------gr~~eAl~~l~~~l~~ 723 (854)
++..+|.++...|++.+|+.++++++. .|..+..+..++ ....+.++..+ |++++|+.+|++++.
T Consensus 380 --~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 456 (537)
T 3fp2_A 380 --VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE- 456 (537)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-
Confidence 245678899999999999999999996 444443333333 22334456667 999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. .+.++++||.++..+|++++|.+++++
T Consensus 457 -~~--------------------------------------p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 457 -LD--------------------------------------PR----------SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 32 467889999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHH
Q 003047 804 ALSILPRSTEATLTAIY 820 (854)
Q Consensus 804 Al~~~P~~~~a~~l~~y 820 (854)
++++.|+.+.......+
T Consensus 488 al~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 488 SAILARTMDEKLQATTF 504 (537)
T ss_dssp HHHHC--CHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHhH
Confidence 99999999766554443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=286.75 Aligned_cols=464 Identities=14% Similarity=0.032 Sum_probs=333.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
.++..|..++..|++++|+..|++++.. |.++.+++.++.+++..+. +.+++..+.+.. +..
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~----------~~~- 180 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD------WQGALNLLGETN----------PFR- 180 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC------HHHHHHHHCSSC----------TTC-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh------HHHHHHHHhccC----------Ccc-
Confidence 3445567788999999999999999765 7789999999988775543 333444333211 110
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
..+... ... .....+.+.++..|+.+|.+|...|++++|+++|+++++..+...+ +.
T Consensus 181 -~~~~~~-----------~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~ 237 (597)
T 2xpi_A 181 -KDEKNA-----------NKL------LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE-----AF 237 (597)
T ss_dssp ----------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HH
T ss_pred -cccccc-----------ccc------cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH-----HH
Confidence 000000 000 0001113457889999999999999999999999999985433222 34
Q ss_pred HHHHHHHHHccCHHHHHHHHHH--HHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIY--LEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~--lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
..++.++...+....+. +.. +++..... +. .....++..+..
T Consensus 238 ~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~----~~------------------------------~~~~~~~~~~~~ 281 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDL--VLKLNYSTYSKED----AA------------------------------FLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHTTCSCHHHHHHH--HHHSCTHHHHGGG----HH------------------------------HHHHHHHTTSCT
T ss_pred HHHHHhhcccchhHHHH--HHhcCCcccccch----HH------------------------------HHHHHHHHHHHH
Confidence 55556555444333332 111 11111000 00 000000000000
Q ss_pred hh--hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 267 LS--RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 267 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
.. ..+.++.--|.... +. + -........+.+|...|++++|++.+
T Consensus 282 ~~~~g~~~~A~~~~~~~~-----~~------------------------~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSIN-----GL------------------------E----KSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp TTTHHHHHHHHHHHHTST-----TG------------------------G----GCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhh-----cC------------------------C----chHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 00 01111111111111 00 0 00124445688899999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
++++..+ |++..++..++.++...|++++|++++++++. ..|. ...+++.+|.+|.+.|++++|+.+|++++..
T Consensus 329 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 402 (597)
T 2xpi_A 329 TKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTM-- 402 (597)
T ss_dssp HHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 9999999 99999999999999999999999999999998 6784 5789999999999999999999999999997
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSD 504 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~ 504 (854)
.+....+|+.+|.+|...|++++|+++|++++.+.|+++.+|..+|.+|.. .+
T Consensus 403 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g---------- 455 (597)
T 2xpi_A 403 --------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ---LG---------- 455 (597)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH---HT----------
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH---cC----------
Confidence 345678999999999999999999999999999999999999999999882 20
Q ss_pred CcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCc
Q 003047 505 GSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSS 584 (854)
Q Consensus 505 ~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~ 584 (854)
.++.|..+|++++.+.|...
T Consensus 456 -----------------------------------------------~~~~A~~~~~~~~~~~~~~~------------- 475 (597)
T 2xpi_A 456 -----------------------------------------------NILLANEYLQSSYALFQYDP------------- 475 (597)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHCCCCH-------------
T ss_pred -----------------------------------------------CHHHHHHHHHHHHHhCCCCh-------------
Confidence 24779999999999887733
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHH
Q 003047 585 VEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAY 664 (854)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~ 664 (854)
.++..++.
T Consensus 476 ------------------------------------------------------------------------~~~~~l~~ 483 (597)
T 2xpi_A 476 ------------------------------------------------------------------------LLLNELGV 483 (597)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 12567788
Q ss_pred HHHHcCCHHHHHHHHHHHHcC-------CCC-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 665 VELEMENPVKALAAARSLLEL-------PDC-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~~-------p~~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
++...|++.+|+..+++++.. |+. ...+..+|. +++..|++++|+.++++++. .
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~--~----------- 545 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH-----AYRKLKMYDAAIDALNQGLL--L----------- 545 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHH--H-----------
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHH--h-----------
Confidence 999999999999999999863 222 567766666 55679999999999999993 1
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
.|. .+.++++||.+|...|++++|.+++++++++.|+++.++.
T Consensus 546 ---------------------------~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 546 ---------------------------STN----------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp ---------------------------SSC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------------------CCC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 132 4788999999999999999999999999999999998888
Q ss_pred HHHHHH
Q 003047 817 TAIYVD 822 (854)
Q Consensus 817 l~~y~~ 822 (854)
.++.++
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=268.30 Aligned_cols=383 Identities=11% Similarity=0.017 Sum_probs=309.4
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
.+++..++++|.+++..|+|++|+++|+++++.. | + ..+++.++.+|...|++++|+ ..+++++.+.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~----~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~---- 69 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-E-D----PVFYSNLSACYVSVGDLKKVV---EMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-C----HHHHHHHHHHHHHHTCHHHHH---HHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-c----HHHHHhHHHHHHHHhhHHHHH---HHHHHHhccC----
Confidence 3577899999999999999999999999999955 3 2 135788999999999999998 4667777553
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
++.
T Consensus 70 p~~----------------------------------------------------------------------------- 72 (514)
T 2gw1_A 70 PDY----------------------------------------------------------------------------- 72 (514)
T ss_dssp SCC-----------------------------------------------------------------------------
T ss_pred hHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------------------------
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD--------------------------- 355 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~--------------------------- 355 (854)
....+.++.+|..+|++++|+..+++++... |.
T Consensus 73 ------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 73 ------------------SKVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred ------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123345777788888888888888887777 53
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHH---hcCHHHHHHHH
Q 003047 356 ----------------------------------------------------SSLALFLKSQLEYA---RRNHRKAIKLL 380 (854)
Q Consensus 356 ----------------------------------------------------~~~a~~lla~ly~~---~g~~~kAl~~l 380 (854)
+...++.+|..++. .|++++|+++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 37777888888886 89999999999
Q ss_pred HHhhh-----c-cCCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 381 LALSN-----R-TEMG------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 381 ~kal~-----~-~dp~------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
++++. . ..|. ..+.+++.+|.+|...|++++|+.+|++++.. .+. ..++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------------~~~-~~~~~~ 275 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----------------FPR-VNSYIY 275 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----------------CCC-HHHHHH
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------------Ccc-HHHHHH
Confidence 99887 2 1221 34678888999999999999999999999997 234 788999
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+|.++...|++++|+.+|++++.++|+++.+|..+|.++.. .+
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~---------------------------------- 318 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI---LQ---------------------------------- 318 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH---TT----------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH---hC----------------------------------
Confidence 99999999999999999999999999999999999998882 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|+.++.+.|...
T Consensus 319 -----------------------~~~~A~~~~~~~~~~~~~~~------------------------------------- 338 (514)
T 2gw1_A 319 -----------------------NYDQAGKDFDKAKELDPENI------------------------------------- 338 (514)
T ss_dssp -----------------------CTTHHHHHHHHHHHTCSSCS-------------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHhChhhH-------------------------------------
Confidence 12559999999999887743
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.++..+|.++...|++.+|+.++++++. .|.
T Consensus 339 ------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 339 ------------------------------------------------FPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp ------------------------------------------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred ------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 1255678899999999999999999997 788
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCC
Q 003047 688 CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRD 767 (854)
Q Consensus 688 ~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~ 767 (854)
.+..+..+|.+| ..+|++++|+.++++++. .+. . .|.
T Consensus 371 ~~~~~~~la~~~-----~~~~~~~~A~~~~~~a~~--~~~---------------------~--------------~~~- 407 (514)
T 2gw1_A 371 APEVPNFFAEIL-----TDKNDFDKALKQYDLAIE--LEN---------------------K--------------LDG- 407 (514)
T ss_dssp CSHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HHH---------------------T--------------SSS-
T ss_pred CHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH--hhh---------------------c--------------cch-
Confidence 888888777754 578999999999999983 100 0 010
Q ss_pred CCCCCchhhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 768 TMFPKPEEARGTLYVNIAAMFAM---QGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 768 ~~p~~~~~a~a~~~~NLa~~~~~---~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
. ...+.+++++|.++.. .|++++|..++++++.+.|+++.++..++.++.+.|++++|+..+++ ....|.
T Consensus 408 ----~--~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 408 ----I--YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp ----C--SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ----H--HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 0 0025688999999999 99999999999999999999999999999999999999999999988 555565
Q ss_pred ccc
Q 003047 844 LPS 846 (854)
Q Consensus 844 ~~~ 846 (854)
.|.
T Consensus 482 ~~~ 484 (514)
T 2gw1_A 482 MEE 484 (514)
T ss_dssp HHH
T ss_pred cHH
Confidence 544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=264.34 Aligned_cols=411 Identities=13% Similarity=0.054 Sum_probs=292.0
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
..+.+..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|..+|++++|+ ..+++++.+.
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~---~~~~~al~~~--- 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-----VFYSNISACYISTGDLEKVI---EFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHH---HHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHhcC---
Confidence 345788999999999999999999999999999544322 36888999999999999998 5678887664
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhh--hhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLS--EETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
++. ...+...+. +....+ ++++++...+ ...+.
T Consensus 90 -p~~-------------------------------~~~~~~la~-~~~~~g~~~~A~~~~~~~---~~~~~--------- 124 (537)
T 3fp2_A 90 -PDH-------------------------------SKALLRRAS-ANESLGNFTDAMFDLSVL---SLNGD--------- 124 (537)
T ss_dssp -TTC-------------------------------HHHHHHHHH-HHHHHTCHHHHHHHHHHH---C-------------
T ss_pred -Cch-------------------------------HHHHHHHHH-HHHHcCCHHHHHHHHHHH---hcCCC---------
Confidence 111 000111111 111111 1222211111 00000
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH--------H-------------
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS--------L------------- 358 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~--------~------------- 358 (854)
... . ....++..+..++|.+.++.++... |.+. .
T Consensus 125 ----------------~~~--~-----~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 125 ----------------FDG--A-----SIEPMLERNLNKQAMKVLNENLSKD--EGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHTSCHHHH
T ss_pred ----------------CCh--H-----HHHHHHHHHHHHHHHHHHHHHHHhC--ccccccccchHhHHHHHHHhcChHHH
Confidence 000 0 0112223333344555555554432 2111 0
Q ss_pred ----------------HHHHH--------HHHHHHhcCHHHHHHHHHHhhhccCCCcc------HHHHHHHHHHHHHcCC
Q 003047 359 ----------------ALFLK--------SQLEYARRNHRKAIKLLLALSNRTEMGIS------SMFNNNLGCIYYQLAK 408 (854)
Q Consensus 359 ----------------a~~ll--------a~ly~~~g~~~kAl~~l~kal~~~dp~~~------a~~~nnLG~iy~~~g~ 408 (854)
....+ +......|++++|+++|++++. .+|... +.++..+|.+|...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11111 3344455799999999999999 677531 3367889999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+.+|++++.. .+. ..+++.+|.++...|++++|+.+|++++.++|+++.+|..+|.++.
T Consensus 259 ~~~A~~~~~~~~~~----------------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 259 LLDAQVLLQESINL----------------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHH----------------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----------------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999998 233 7899999999999999999999999999999999999999999988
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
..+ .++.|..+|++++.+.|
T Consensus 322 ---~~~---------------------------------------------------------~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 322 ---ILQ---------------------------------------------------------DYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp ---HTT---------------------------------------------------------CHHHHHHHHHHHHHHCT
T ss_pred ---hcC---------------------------------------------------------CHHHHHHHHHHHHHhCC
Confidence 210 24779999999999988
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
....
T Consensus 342 ~~~~---------------------------------------------------------------------------- 345 (537)
T 3fp2_A 342 ENVY---------------------------------------------------------------------------- 345 (537)
T ss_dssp TCSH----------------------------------------------------------------------------
T ss_pred CCHH----------------------------------------------------------------------------
Confidence 7431
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
++..+|.++..+|++.+|+.++++++. .|.++..+..+|.+| ..+|++++|+.+|++++. .+.
T Consensus 346 ---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~a~~--~~~ 409 (537)
T 3fp2_A 346 ---------PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL-----TDRGDFDTAIKQYDIAKR--LEE 409 (537)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHhCCHHHHHHHHHHHHH--cCC
Confidence 255678899999999999999999997 888899998887755 578999999999999993 110
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc----------CCHHHH
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ----------GEFERA 797 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~----------g~~e~A 797 (854)
. .+..+ .....++++|.++..+ |++++|
T Consensus 410 ---------------------~--------------~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 410 ---------------------V--------------QEKIH-------VGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp ---------------------H--------------CSSCS-------STTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred ---------------------c--------------chhhH-------HHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 0 01000 0344568899999999 999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 798 HHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 798 ~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
+.++++++++.|+++.++..++.++.++|++++|+..+++ .+..|..+
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999999999999999988 44445443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=268.62 Aligned_cols=401 Identities=12% Similarity=-0.047 Sum_probs=259.7
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCc----hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPID----ETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~----e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
..+..|.++|.+|+.+|+|++|+++|++++++.+... +.....++.+++.+|..+|++++|+ .++++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~---~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ---IYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH---HHHHHHHHHhH
Confidence 3456777899999999999999999999988643221 1222335678899999999999998 67888877652
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
..... .+.. ..
T Consensus 126 ~~~~~-------------------~~~~--------------------------------------------------~~ 136 (472)
T 4g1t_A 126 KFSSP-------------------YRIE--------------------------------------------------SP 136 (472)
T ss_dssp HSCCS-------------------SCCC--------------------------------------------------CH
T ss_pred hcccc-------------------cchh--------------------------------------------------hH
Confidence 21000 0000 00
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---hcCHHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA---RRNHRKA 376 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~---~g~~~kA 376 (854)
.+++++|.+ .+++..+++++|++.+++++.++ |+++.++..+|.+++. .+++++|
T Consensus 137 ~~~~~~g~~--------------------~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 137 ELDCEEGWT--------------------RLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHH--------------------HHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 011222222 23334567899999999999999 9999999999998764 4677899
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ 452 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ 452 (854)
++.|++++. .+|. .+.++.++|..+.. .|++++|+.+|++++.. .+....+++++|.+
T Consensus 195 l~~~~~al~-l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----------------~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 195 IDPLRQAIR-LNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------------APGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHH-HCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----------------CSSCHHHHHHHHHH
T ss_pred HHHHHHHhh-cCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----------------CccHHHHHHHHHHH
Confidence 999999999 7884 67888889877665 46788999999999998 34567899999999
Q ss_pred HHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCC
Q 003047 453 YLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGH 532 (854)
Q Consensus 453 ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~ 532 (854)
|...|++++|+.+|++++++.|+++.+|.+||.|+........... ..... .
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~-------------------~~~~~---------~ 308 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR-------------------ENGMY---------G 308 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------------------------------C
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH-------------------HHHHH---------H
Confidence 9999999999999999999999999999999999874322210000 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccc
Q 003047 533 VDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKIS 612 (854)
Q Consensus 533 ~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (854)
........+.|..+|+.|+.+.|....
T Consensus 309 -------------~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------------------- 335 (472)
T 4g1t_A 309 -------------KRKLLELIGHAVAHLKKADEANDNLFR---------------------------------------- 335 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHCTTTCC----------------------------------------
T ss_pred -------------HHHHHhhHHHHHHHHHHHhhcCCchhh----------------------------------------
Confidence 000011257899999999999888542
Q ss_pred ccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCChH-
Q 003047 613 VGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSR- 690 (854)
Q Consensus 613 ~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~~~- 690 (854)
++..+|.++..+|++.+|+.+++++|.. ++...
T Consensus 336 ---------------------------------------------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 336 ---------------------------------------------VCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp ---------------------------------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred ---------------------------------------------hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 1346788999999999999999999974 44322
Q ss_pred --HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh--hhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 691 --IYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE--QWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 691 --~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
.+..+|.+ .+..+|++++|+.+|.+++. .+........... +.+.++-. .. .|.
T Consensus 371 ~~~~~~~~~~----~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l--~~--------------~p~ 428 (472)
T 4g1t_A 371 QLLHLRYGNF----QLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRL--SK--------------NGA 428 (472)
T ss_dssp HHHHHHHHHH----HHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHH--HH--------------CC-
T ss_pred HHHHHHHHHH----HHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHH--Hh--------------CCC
Confidence 23444433 34578999999999999994 2211100000000 00000000 00 122
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEA 814 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a 814 (854)
.+.++++||.+|..+|++++|+++|++||++.|..|.+
T Consensus 429 ----------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 429 ----------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp ----------CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 35667778888888888888888888887777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=238.94 Aligned_cols=316 Identities=16% Similarity=0.106 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+++..|++++|++.+++++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. ...++..+|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-LKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-cchHHHHHHHH
Confidence 45567889999999999999999999999 99999999999999999999999999999999 6884 57899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHH------------HHHHHHCCCcHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNC------------GLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nL------------G~~ll~~Gk~eeAl~~y~kAL 470 (854)
|..+|++++|+.+|++++...+... ....+++.+ |.++...|++++|+.+|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQ-------------EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCccc-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999832000 234444444 899999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
.+.|+++.+|..+|.++.. .+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~-------------------------------------------------------- 168 (359)
T 3ieg_A 148 EVCVWDAELRELRAECFIK---EG-------------------------------------------------------- 168 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHH---TT--------------------------------------------------------
T ss_pred HhCCCchHHHHHHHHHHHH---CC--------------------------------------------------------
Confidence 9999999999999999882 10
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
.++.|..+|++++.+.|...
T Consensus 169 -~~~~A~~~~~~~~~~~~~~~----------------------------------------------------------- 188 (359)
T 3ieg_A 169 -EPRKAISDLKAASKLKSDNT----------------------------------------------------------- 188 (359)
T ss_dssp -CHHHHHHHHHHHHTTCSCCH-----------------------------------------------------------
T ss_pred -CHHHHHHHHHHHHHhCCCCH-----------------------------------------------------------
Confidence 24679999999999877743
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHH-------HHHHH
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGH-------IYAAE 702 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~-------lY~ae 702 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..+.. +..+.
T Consensus 189 --------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 189 --------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp --------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 1256778899999999999999999997 7888877665543 35577
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
++...|++++|+.++++++. .+ |. .+ .....++.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~--~~--------------------------------------~~-----~~-~~~~~~~~ 276 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMK--TE--------------------------------------PS-----VA-EYTVRSKE 276 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HC--------------------------------------CS-----SH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--cC--------------------------------------CC-----ch-HHHHHHHH
Confidence 88899999999999999993 11 11 11 12456688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
++|.++..+|++++|..++++++++.|+++.++..++.++...|++++|+..+++ .+..|.++.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999999999999999 666666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=234.15 Aligned_cols=294 Identities=13% Similarity=0.070 Sum_probs=214.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC---CccHHHHHHH-----
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEM---GISSMFNNNL----- 399 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp---~~~a~~~nnL----- 399 (854)
+.+|...|++++|++.+++++.+. |++..+++.+|.++...|++++|+++|++++. .+| . ...++..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK-SNPSEQE-EKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCcccC-hHHHHHHHHHHHH
Confidence 444445555555555555555555 66666666666666666666666666666666 445 3 23444444
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 400 -------GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 400 -------G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEV----------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999987 3445688889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
.|+++.+|..+|.++.. .+ .
T Consensus 184 ~~~~~~~~~~la~~~~~---~~---------------------------------------------------------~ 203 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQ---LG---------------------------------------------------------D 203 (359)
T ss_dssp CSCCHHHHHHHHHHHHH---HT---------------------------------------------------------C
T ss_pred CCCCHHHHHHHHHHHHH---cC---------------------------------------------------------C
Confidence 99999999999988873 10 1
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|..+|+.++.+.|.....+.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~--------------------------------------------------------- 226 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFA--------------------------------------------------------- 226 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhCccchHHHH---------------------------------------------------------
Confidence 36689999999988888543110
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.. ...........+|.++...|++.+|+.++++++. .|..+. ....+....+.++..+|+++
T Consensus 227 --~~--------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 227 --HY--------------KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-YTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp --HH--------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred --HH--------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHccCHH
Confidence 00 0000112345668889999999999999999998 666553 33344455666778899999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.++++++. .+ |. .+.+++++|.++..+
T Consensus 290 ~A~~~~~~~~~--~~--------------------------------------~~----------~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 290 EAIRICSEVLQ--ME--------------------------------------PD----------NVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHHHHH--HC--------------------------------------TT----------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hC--------------------------------------cc----------cHHHHHHHHHHHHHc
Confidence 99999999993 11 32 467899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 003047 792 GEFERAHHFVTQALSILPRSTEATLTAIYVDLML 825 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~ 825 (854)
|++++|.+++++++++.|+++.+...+.-+...+
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999988777766665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-25 Score=248.08 Aligned_cols=359 Identities=12% Similarity=0.030 Sum_probs=283.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|+++..++.+|.+|+..|+|++|+.+|+++++..+.. ..+++.++.+|...|++++|+ ..|++++.+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~---~~~~~al~~~--- 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAAL---PDLTKVIQLK--- 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHCCCHHHHH---HHHHHHHhcC---
Confidence 78899999999999999999999999999999854332 236788999999999999998 5678777553
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++.
T Consensus 91 -p~~---------------------------------------------------------------------------- 93 (450)
T 2y4t_A 91 -MDF---------------------------------------------------------------------------- 93 (450)
T ss_dssp -TTC----------------------------------------------------------------------------
T ss_pred -CCc----------------------------------------------------------------------------
Confidence 110
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLK------------SQL 366 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~ll------------a~l 366 (854)
.......+.+|...|++++|++.+++++.+. |++. .++..+ |..
T Consensus 94 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 94 -------------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123335778889999999999999999999 9998 776555 777
Q ss_pred HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 367 EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 367 y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
+...|++++|+++|++++. ..|. .+.+++++|.+|...|++++|+.+|++++.. .+....++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~ 214 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILE-VCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL----------------KNDNTEAF 214 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------------HCSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHH
Confidence 9999999999999999999 6884 6789999999999999999999999999998 24467899
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccC
Q 003047 447 YNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDG 526 (854)
Q Consensus 447 ~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~ 526 (854)
+++|.+|...|++++|+.+|++++.++|+++.+|..++.+........ +|..
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------------------~~~~---------- 266 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE------------------SAEE---------- 266 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH------------------HHHH----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH------------------HHHH----------
Confidence 999999999999999999999999999999999988743321000000 0000
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccc
Q 003047 527 FRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSS 606 (854)
Q Consensus 527 ~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (854)
+ .....++.|..+|+.++.+.|.....
T Consensus 267 -----~---------------~~~g~~~~A~~~~~~~l~~~p~~~~~--------------------------------- 293 (450)
T 2y4t_A 267 -----L---------------IRDGRYTDATSKYESVMKTEPSIAEY--------------------------------- 293 (450)
T ss_dssp -----H---------------HHHTCHHHHHHHHHHHHHHCCSSHHH---------------------------------
T ss_pred -----H---------------HHcCCHHHHHHHHHHHHhcCCcchHH---------------------------------
Confidence 0 00013578999999999998874310
Q ss_pred ccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C
Q 003047 607 LDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-L 685 (854)
Q Consensus 607 ~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~ 685 (854)
...++.++|.++..+|++.+|+.++++++. .
T Consensus 294 ------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 294 ------------------------------------------------TVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 013467889999999999999999999997 8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCC
Q 003047 686 PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDS 765 (854)
Q Consensus 686 p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p 765 (854)
|+.+.++..+|.+ +..+|++++|+.++++++. .+ |
T Consensus 326 p~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~al~--~~--------------------------------------p 360 (450)
T 2y4t_A 326 PDNVNALKDRAEA-----YLIEEMYDEAIQDYETAQE--HN--------------------------------------E 360 (450)
T ss_dssp TTCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHT--TS--------------------------------------S
T ss_pred cccHHHHHHHHHH-----HHHhcCHHHHHHHHHHHHH--hC--------------------------------------c
Confidence 8889999888775 4579999999999999993 21 3
Q ss_pred CCCCCCCchhhhHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHhhCCCC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAM------------FAMQG-----EFERAHHFVTQ-ALSILPRS 811 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~------------~~~~g-----~~e~A~~~~~~-Al~~~P~~ 811 (854)
. .+.++..|+.+ |...| +.+++.+.|++ ++...|+.
T Consensus 361 ~----------~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 361 N----------DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp S----------CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred c----------hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 2 35666777744 44445 67788999997 88888875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-24 Score=240.34 Aligned_cols=315 Identities=17% Similarity=0.111 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+..|...|++++|++.+++++... |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++.+|.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-LKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-cHHHHHHHHH
Confidence 355667889999999999999999999999 99999999999999999999999999999999 7884 5889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH---HH------------HHHHHHHHHHCCCcHHHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL---LI------------TYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~---~~------------~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+|..+|++++|+.+|++++...+ ... .+ ++++|.++...|++++|+.+|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP----------------SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC----------------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999732 222 33 455688899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCC
Q 003047 467 QKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSD 546 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~ 546 (854)
++++.+.|+++.+|..+|.++. ..+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~---~~g---------------------------------------------------- 191 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFI---KEG---------------------------------------------------- 191 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH---HTT----------------------------------------------------
T ss_pred HHHHHhCCCChHHHHHHHHHHH---HCC----------------------------------------------------
Confidence 9999999999999999999988 221
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccc
Q 003047 547 GQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKD 626 (854)
Q Consensus 547 ~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 626 (854)
.++.|..+|++++.+.|...
T Consensus 192 -----~~~~A~~~~~~~~~~~~~~~------------------------------------------------------- 211 (450)
T 2y4t_A 192 -----EPRKAISDLKAASKLKNDNT------------------------------------------------------- 211 (450)
T ss_dssp -----CGGGGHHHHHHHHHHHCSCH-------------------------------------------------------
T ss_pred -----CHHHHHHHHHHHHHhCCCCH-------------------------------------------------------
Confidence 12449999999999887743
Q ss_pred ccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHH-------
Q 003047 627 QKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHI------- 698 (854)
Q Consensus 627 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~l------- 698 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..++.+
T Consensus 212 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 212 ------------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 1256778899999999999999999997 78888777666332
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
-.+.++...|++++|+.+|++++. .+ |. .+ ....
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~--~~--------------------------------------p~-----~~-~~~~ 295 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMK--TE--------------------------------------PS-----IA-EYTV 295 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HC--------------------------------------CS-----SH-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cC--------------------------------------Cc-----ch-HHHH
Confidence 236678889999999999999993 11 11 11 1136
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
..++++|.++...|++++|+.++++++.+.|+++.++..++.++...|++++|+..+++ ....|.++..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 78999999999999999999999999999999999999999999999999999999999 6666766543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=229.94 Aligned_cols=288 Identities=15% Similarity=0.097 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+.++..+...|++++|++.+++++..+ |++..++..++.+++..|++++|+.++++++. .+|. .+.++..+|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~ 99 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD-LYPS-NPVSWFAVGCY 99 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-STHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcC-CHHHHHHHHHH
Confidence 34557889999999999999999999999 99999999999999999999999999999999 7884 57789999999
Q ss_pred HHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 403 YYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 403 y~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
|..+| ++++|+.+|++++.. .+....+|+++|.++...|++++|+.+|++++.+.|+++.+|.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL----------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT----------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence 99999 999999999999998 2345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.+|.++.. .+ .++.|..+|+
T Consensus 164 ~l~~~~~~---~~---------------------------------------------------------~~~~A~~~~~ 183 (330)
T 3hym_B 164 YIGLEYGL---TN---------------------------------------------------------NSKLAERFFS 183 (330)
T ss_dssp HHHHHHHH---TT---------------------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHH---Hh---------------------------------------------------------hHHHHHHHHH
Confidence 99998882 10 2477999999
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+++.+.|...
T Consensus 184 ~al~~~~~~~---------------------------------------------------------------------- 193 (330)
T 3hym_B 184 QALSIAPEDP---------------------------------------------------------------------- 193 (330)
T ss_dssp HHHTTCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCCCCh----------------------------------------------------------------------
Confidence 9999988743
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL----------PDCSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~----------p~~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.++..+|.++..+|++.+|+.++++++.. |..+..+..+|.+| ..+|+++
T Consensus 194 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~ 253 (330)
T 3hym_B 194 ---------------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC-----RKLKKYA 253 (330)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH-----HHTTCHH
T ss_pred ---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH-----HHhcCHH
Confidence 12567789999999999999999999973 66678888888755 4789999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.++++++. .+ |. .+.+++++|.++..+
T Consensus 254 ~A~~~~~~a~~--~~--------------------------------------~~----------~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 254 EALDYHRQALV--LI--------------------------------------PQ----------NASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHH--HS--------------------------------------TT----------CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hC--------------------------------------cc----------chHHHHHHHHHHHHh
Confidence 99999999993 11 22 467789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCHHH
Q 003047 792 GEFERAHHFVTQALSILPRSTEATLTAIYVD-LMLGKSQE 830 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~-L~~G~~~e 830 (854)
|++++|.+++++++++.|+++.++..++.++ ...|+.+.
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 9999999999999999999999999888876 67777653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-24 Score=227.41 Aligned_cols=283 Identities=15% Similarity=0.051 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEG 107 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 107 (854)
..++..|..++..|+|++|+++|+++++.+|.++.+++.++.+++..+ ++.+++..+.+.+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~------~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN------KANELFYLSHKLVDL----------- 85 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT------CHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh------hHHHHHHHHHHHHHh-----------
Confidence 457889999999999999999999999999999999999998887554 344577767676631
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
+|+++..++++|.++...| ++++|+++|+++++..+...+
T Consensus 86 ----------------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 126 (330)
T 3hym_B 86 ----------------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP----- 126 (330)
T ss_dssp ----------------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH-----
T ss_pred ----------------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH-----
Confidence 4556779999999999999 999999999999996544333
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+++.++.+|...|++++|+ ..+++++.+. ++.
T Consensus 127 ~~~~l~~~~~~~~~~~~A~---~~~~~a~~~~----~~~----------------------------------------- 158 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAM---AAYFTAAQLM----KGC----------------------------------------- 158 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHH---HHHHHHHHHT----TTC-----------------------------------------
T ss_pred HHHHHHHHHHHccCHHHHH---HHHHHHHHhc----ccc-----------------------------------------
Confidence 5788999999999999998 5667776553 100
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
....+..+.+|...|++++|++.+++
T Consensus 159 ------------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 159 ------------------------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp ------------------------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 00223357788899999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC---------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE---------MGISSMFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d---------p~~~a~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
++... |+++.+++.+|.++...|++++|+++|++++.. . | ..+.++.++|.+|..+|++++|+.+|+
T Consensus 185 al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 185 ALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVD-KWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTT-TCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhcccccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999 999999999999999999999999999999983 2 4 345789999999999999999999999
Q ss_pred HHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 418 KALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 418 kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++.. .+....+++++|.++...|++++|+.+|+++++++|+++.+|..++.|+.
T Consensus 261 ~a~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 261 QALVL----------------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHH----------------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHhh----------------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99998 24456899999999999999999999999999999999999999999885
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=252.11 Aligned_cols=292 Identities=14% Similarity=0.020 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHh
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDK---------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~---------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
.+-.-|..++..|+|++|++.|++++++ +|....+++|+|.+|+..+++.+ ++..+.+++.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~------A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD------VQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHH------HHHHHHHHHHHhHh
Confidence 3445799999999999999999999985 56678899999999998776444 44444444421100
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHh--hcHHHHHHHHHHhhhccC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHL--HEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~--~~y~~A~~~~e~l~~~~~ 177 (854)
.. . ..+++.+..+.++|.++... ++|++|+++|+++++..+
T Consensus 127 --~~--~---------------------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 127 --FS--S---------------------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp --SC--C---------------------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred --cc--c---------------------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 00 0 01345667888998777654 589999999999999644
Q ss_pred CCchhhHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 178 PIDETTALQICLLLLDVALA---CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~---~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
...+ +...++.++.. .+++++|+ ..|++++.+. ++.
T Consensus 170 ~~~~-----~~~~~~~~~~~l~~~~~~~~al---~~~~~al~l~----p~~----------------------------- 208 (472)
T 4g1t_A 170 KNPE-----FTSGLAIASYRLDNWPPSQNAI---DPLRQAIRLN----PDN----------------------------- 208 (472)
T ss_dssp TCHH-----HHHHHHHHHHHHHHSCCCCCTH---HHHHHHHHHC----SSC-----------------------------
T ss_pred CCHH-----HHHHHHHHHHHhcCchHHHHHH---HHHHHHhhcC----Ccc-----------------------------
Confidence 4333 34555655444 46667776 6788888764 111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHh
Q 003047 255 DLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT 334 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~ 334 (854)
.. +++++|.+ ...++...
T Consensus 209 -~~-------------------------------------------~~~~l~~~------------------~~~~~~~~ 226 (472)
T 4g1t_A 209 -QY-------------------------------------------LKVLLALK------------------LHKMREEG 226 (472)
T ss_dssp -HH-------------------------------------------HHHHHHHH------------------HHHCC---
T ss_pred -hH-------------------------------------------HHHHHHHH------------------HHHHHhhh
Confidence 00 01112222 23344456
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc--------
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL-------- 406 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~-------- 406 (854)
+++++|.+.+++++.++ |+++.+++.+|.+|...|++++|++.|++++. ..|. .+.+++++|.+|..+
T Consensus 227 ~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE-YIPN-NAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ---CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-hCCC-hHHHHHHHHHHHHHHHHHhhhHH
Confidence 78889999999999999 99999999999999999999999999999999 7884 688999999999754
Q ss_pred -----------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 407 -----------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 407 -----------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+.+++|+.+|++++... +....+++++|.++...|++++|+.+|++++.+.|+
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN----------------DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC----------------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC----------------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 34678888888888872 334567889999999999999999999999999998
Q ss_pred CHH---HHHHHHHH
Q 003047 476 QPL---LWLRLAEC 486 (854)
Q Consensus 476 ~~~---aw~~La~~ 486 (854)
+.. +++++|.+
T Consensus 367 ~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 367 PVAKQLLHLRYGNF 380 (472)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 754 35555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=230.39 Aligned_cols=305 Identities=13% Similarity=-0.012 Sum_probs=239.7
Q ss_pred HHHHhcCHHHHHH-HHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 330 FLLLTRNLKHAKR-EVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 330 lyl~~~~~~~A~~-elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+|...+++++|++ .+++++.+. |+++ ..++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~ 109 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPK-HMEAWQYLGTTQA 109 (368)
T ss_dssp ------------CHHHHCCCCCC--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTT-CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHH
Confidence 4556789999999 999999998 8874 5689999999999999999999999999 7884 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..++
T Consensus 110 ~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 110 ENEQELLAISALRRCLEL----------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp HTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred HCcCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 999999999999999998 3456789999999999999999999999999999999998887665
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.+... . .. ......+| .......++.|+.+|++++
T Consensus 174 ~~~~~---~---~~--------~~~~~~~~-------------------------------~~~~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 174 EGAGG---A---GL--------GPSKRILG-------------------------------SLLSDSLFLEVKELFLAAV 208 (368)
T ss_dssp --------------------------CTTH-------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh---h---cc--------cHHHHHHH-------------------------------HHhhcccHHHHHHHHHHHH
Confidence 43210 0 00 00000000 0001124688999999999
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|.....
T Consensus 209 ~~~p~~~~~----------------------------------------------------------------------- 217 (368)
T 1fch_A 209 RLDPTSIDP----------------------------------------------------------------------- 217 (368)
T ss_dssp HHSTTSCCH-----------------------------------------------------------------------
T ss_pred HhCcCcccH-----------------------------------------------------------------------
Confidence 998873210
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..+|.+|. .+|++++|+.+|++++.
T Consensus 218 ------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~- 279 (368)
T 1fch_A 218 ------------DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-----NGNQSEEAVAAYRRALE- 279 (368)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHH-
T ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-
Confidence 2356789999999999999999999997 8888999988887554 68999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. .+.+++++|.++..+|++++|..++++
T Consensus 280 -~~--------------------------------------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 280 -LQ--------------------------------------PG----------YIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 32 467899999999999999999999999
Q ss_pred HHhhCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 804 ALSILPRS-----------TEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 804 Al~~~P~~-----------~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
++.+.|+. +.++..++.++.++|++++|..++++
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999988 88999999999999999999999875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-21 Score=221.76 Aligned_cols=394 Identities=14% Similarity=0.085 Sum_probs=304.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCc
Q 003047 45 ECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGV 124 (854)
Q Consensus 45 ~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 124 (854)
.+++.++++. .++++.+++.||.+++.- .....++.+++..++++.+
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g--~~~~~~~~~A~~~~~~a~~----------------------------- 71 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQG--NETTKDLTQAMDWFRRAAE----------------------------- 71 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcC--CCCCcCHHHHHHHHHHHHH-----------------------------
Confidence 3455666554 478999999999776642 2234566778888888873
Q ss_pred ccccccccccCCcccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH---
Q 003047 125 VGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA--- 197 (854)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~--- 197 (854)
..++.+++++|.+|.. .+++++|+++|+++... .+. .+++.|+.+|..
T Consensus 72 ------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~---~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 72 ------------------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLP---QAQQNLGVMYHEGNG 126 (490)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHTSS
T ss_pred ------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH---HHHHHHHHHHHcCCC
Confidence 1245689999999999 99999999999999873 222 357889999999
Q ss_pred -ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhh
Q 003047 198 -CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETL 276 (854)
Q Consensus 198 -~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (854)
.+++++|+ .+|+++.... + .
T Consensus 127 ~~~~~~~A~---~~~~~a~~~~-----~-------------------------------~-------------------- 147 (490)
T 2xm6_A 127 VKVDKAESV---KWFRLAAEQG-----R-------------------------------D-------------------- 147 (490)
T ss_dssp SCCCHHHHH---HHHHHHHHTT-----C-------------------------------H--------------------
T ss_pred CCCCHHHHH---HHHHHHHHCC-----C-------------------------------H--------------------
Confidence 89999998 5778775431 0 0
Q ss_pred hhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcC
Q 003047 277 EDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL----TRNLKHAKREVKLAMNIAR 352 (854)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~----~~~~~~A~~elk~al~~~~ 352 (854)
.+..+||. +|.. .+++++|++.++++++..
T Consensus 148 -----------------------~a~~~Lg~----------------------~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 148 -----------------------SGQQSMGD----------------------AYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp -----------------------HHHHHHHH----------------------HHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred -----------------------HHHHHHHH----------------------HHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 01222333 3443 678999999999998764
Q ss_pred CCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhch
Q 003047 353 GKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 353 ~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~ 424 (854)
++.+++.+|.+|.. .+++++|+++|+++.. .. ++.++++||.+|.. .+++++|+.+|++++..
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 79999999999999 9999999999999998 32 36788899999998 89999999999999886
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCC
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGR 500 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~ 500 (854)
....+++++|.+|.. .+++++|+.+|+++++. +++.++++||.++. ... .
T Consensus 253 ----------------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~---~~~---~-- 306 (490)
T 2xm6_A 253 ----------------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD---KGA---E-- 306 (490)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH---HCB---T--
T ss_pred ----------------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH---cCC---C--
Confidence 246789999999999 99999999999999765 78999999998887 210 0
Q ss_pred CCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCC
Q 003047 501 SLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLP 580 (854)
Q Consensus 501 ~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~ 580 (854)
| . ...++.|..+|++|+...+.
T Consensus 307 -------------g-----------------~-----------------~~~~~~A~~~~~~a~~~~~~----------- 328 (490)
T 2xm6_A 307 -------------G-----------------V-----------------AKNREQAISWYTKSAEQGDA----------- 328 (490)
T ss_dssp -------------T-----------------B-----------------CCCHHHHHHHHHHHHHTTCH-----------
T ss_pred -------------C-----------------C-----------------cCCHHHHHHHHHHHHhcCCH-----------
Confidence 0 0 01358899999999864211
Q ss_pred CCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHH
Q 003047 581 SNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLA 660 (854)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~ 660 (854)
.++.
T Consensus 329 ----------------------------------------------------------------------------~a~~ 332 (490)
T 2xm6_A 329 ----------------------------------------------------------------------------TAQA 332 (490)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1245
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 661 NLAYVELEME---NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 661 ~la~v~l~lg---~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
+||.++...| ++.+|+.+++++++. .++.++..||.+|..- .--.+++++|+.+|+++.. .
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g-~g~~~~~~~A~~~~~~A~~--~------------ 396 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAE--Q------------ 396 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH--T------------
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHh--C------------
Confidence 6788888867 899999999999987 5688999999877520 0006899999999999992 1
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPR--- 810 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~--- 810 (854)
. .+.++++||.+|.. .+++++|..+|++|++..|+
T Consensus 397 ----------------------------~----------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 438 (490)
T 2xm6_A 397 ----------------------------G----------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG 438 (490)
T ss_dssp ----------------------------T----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred ----------------------------C----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence 0 35678999999999 89999999999999999854
Q ss_pred CHHHHHHHHHHHHh
Q 003047 811 STEATLTAIYVDLM 824 (854)
Q Consensus 811 ~~~a~~l~~y~~L~ 824 (854)
++.+...++.++..
T Consensus 439 ~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 439 TENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHTTSCHH
T ss_pred CHHHHHHHHhcCHh
Confidence 77777777666443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=225.10 Aligned_cols=275 Identities=15% Similarity=0.013 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
...++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPG-DAEAWQFLGITQAENENEQAAIVALQRCLEL-------------- 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 44599999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccc
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKG 516 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g 516 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|+++.+|..++........ +|.
T Consensus 129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------------------l~~- 185 (365)
T 4eqf_A 129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR--------------------MSK- 185 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------
T ss_pred --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH--------------------HHH-
Confidence 345678999999999999999999999999999999998888877411110000 000
Q ss_pred ccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccc
Q 003047 517 KWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 517 ~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
.......++.|..+|++++.+.|.....
T Consensus 186 -----------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------- 213 (365)
T 4eqf_A 186 -----------------------------SPVDSSVLEGVKELYLEAAHQNGDMIDP----------------------- 213 (365)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHSCSSCCH-----------------------
T ss_pred -----------------------------HHhhhhhHHHHHHHHHHHHHhCcCccCH-----------------------
Confidence 0011124689999999999998873210
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL 676 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al 676 (854)
.++..+|.++..+|++.+|+
T Consensus 214 ------------------------------------------------------------~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 214 ------------------------------------------------------------DLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHCCCHHHHH
Confidence 23567899999999999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.++++++. .|..+..+..+|.+| ..+|++++|+.+|++++. .+
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~--~~----------------------------- 277 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATL-----ANGDRSEEAVEAYTRALE--IQ----------------------------- 277 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HC-----------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHh--cC-----------------------------
Confidence 99999997 888999998888755 479999999999999993 11
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHH
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------------TEATLTAIYVDL 823 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------------~~a~~l~~y~~L 823 (854)
|. .+.++++||.++..+|++++|..++++++++.|+. ..++..++.++.
T Consensus 278 ---------p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 278 ---------PG----------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp ---------TT----------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred ---------CC----------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 32 47889999999999999999999999999999873 467778888888
Q ss_pred hcCCHHHHHHHHHh
Q 003047 824 MLGKSQEALAKLKY 837 (854)
Q Consensus 824 ~~G~~~eA~~~lk~ 837 (854)
.+|+.+.+..+.++
T Consensus 339 ~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 339 LMDQPELFQAANLG 352 (365)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHHh
Confidence 99999999998877
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-20 Score=210.69 Aligned_cols=403 Identities=14% Similarity=0.073 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 27 TATLAKEAALYFQ----SRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 27 ~~~l~~~a~~~~~----~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
+..++.-|..++. .+++++|++.|+++.+. +++.++++||.+++.- ..-+.++.+++..++++..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~~~~~A~~~~~~a~~------- 107 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNG--EGVPQDYAQAVIWYKKAAL------- 107 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHH-------
Confidence 4567778888888 99999999999999986 7899999999877652 2234556778888888873
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCC
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~ 178 (854)
..++..++++|.+|.. .+++++|+++|+++...
T Consensus 108 ----------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 144 (490)
T 2xm6_A 108 ----------------------------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--- 144 (490)
T ss_dssp ----------------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ----------------------------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 1245689999999999 89999999999999873
Q ss_pred CchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 179 IDETTALQICLLLLDVALA----CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 179 ~~e~~~~~~~l~l~~vy~~----~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
++. .+++.|+.+|.. .+++++|+ .+|+++.... +
T Consensus 145 -~~~---~a~~~Lg~~y~~g~g~~~d~~~A~---~~~~~a~~~~-----~------------------------------ 182 (490)
T 2xm6_A 145 -GRD---SGQQSMGDAYFEGDGVTRDYVMAR---EWYSKAAEQG-----N------------------------------ 182 (490)
T ss_dssp -TCH---HHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTT-----C------------------------------
T ss_pred -CCH---HHHHHHHHHHHcCCCCCCCHHHHH---HHHHHHHHCC-----C------------------------------
Confidence 222 358889999998 88999998 5778776431 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH-
Q 003047 255 DLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL- 333 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~- 333 (854)
. .+..+| +.+|..
T Consensus 183 -~-------------------------------------------~a~~~L----------------------g~~y~~g 196 (490)
T 2xm6_A 183 -V-------------------------------------------WSCNQL----------------------GYMYSRG 196 (490)
T ss_dssp -H-------------------------------------------HHHHHH----------------------HHHHHHT
T ss_pred -H-------------------------------------------HHHHHH----------------------HHHHhcC
Confidence 0 011222 334444
Q ss_pred ---hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-
Q 003047 334 ---TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ- 405 (854)
Q Consensus 334 ---~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~- 405 (854)
.++.++|++.++++++.. ++.+++.+|.+|.. .+++++|+++|++++. .. .+.++++||.+|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHCC
Confidence 688999999999998654 78999999999997 8999999999999988 32 36788899999999
Q ss_pred ---cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhcCCCH
Q 003047 406 ---LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-----GKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 406 ---~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-----Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+++++|+.+|++++.. ....+++++|.+|... +++++|+.+|+++++. +++
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCCCCHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 99999999999999875 2467899999999998 9999999999999876 678
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 003047 478 LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLAR 557 (854)
Q Consensus 478 ~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~ 557 (854)
.+|++||.++.. .+.. ..++.|+
T Consensus 329 ~a~~~lg~~y~~---~g~~------------------------------------------------------~~~~~A~ 351 (490)
T 2xm6_A 329 TAQANLGAIYFR---LGSE------------------------------------------------------EEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHHH---SCCH------------------------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHh---CCCc------------------------------------------------------ccHHHHH
Confidence 999999998872 1100 0247799
Q ss_pred HHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHh
Q 003047 558 QCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQ 637 (854)
Q Consensus 558 ~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~ 637 (854)
.+|++|+.. .++
T Consensus 352 ~~~~~a~~~--~~~------------------------------------------------------------------ 363 (490)
T 2xm6_A 352 EWFRKAAAK--GEK------------------------------------------------------------------ 363 (490)
T ss_dssp HHHHHHHHT--TCH------------------------------------------------------------------
T ss_pred HHHHHHHHC--CCH------------------------------------------------------------------
Confidence 999999865 111
Q ss_pred hhccchhhHhHHhhHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHH
Q 003047 638 NSLSYYEDVCRRENQMIKQALLANLAYVELE----MENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEA 713 (854)
Q Consensus 638 ~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~----lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eA 713 (854)
.++.+||.++.. .+|+.+|+.+++++++.. ++.++..||.+|..- .--.+++++|
T Consensus 364 -------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g-~g~~~d~~~A 422 (490)
T 2xm6_A 364 -------------------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYG-LGVERDYVQA 422 (490)
T ss_dssp -------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT-SSSCCCHHHH
T ss_pred -------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC-CCCCCCHHHH
Confidence 235678999999 899999999999999864 588999999877620 0016999999
Q ss_pred HHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCC
Q 003047 714 AEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGE 793 (854)
Q Consensus 714 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~ 793 (854)
+.+|++++. .+ |. .|. .+.+.++||.++.. +
T Consensus 423 ~~~~~~A~~--~~--------------------------------------~~-----~~~--~~~a~~~l~~~~~~--~ 453 (490)
T 2xm6_A 423 WAWFDTAST--ND--------------------------------------MN-----LFG--TENRNITEKKLTAK--Q 453 (490)
T ss_dssp HHHHHHHHH--HH--------------------------------------CC-----HHH--HHHHHHHHTTSCHH--H
T ss_pred HHHHHHHHH--CC--------------------------------------CC-----CcC--CHHHHHHHHhcCHh--H
Confidence 999999993 11 00 011 46677889988775 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHH
Q 003047 794 FERAHHFVTQALSILPRSTEA 814 (854)
Q Consensus 794 ~e~A~~~~~~Al~~~P~~~~a 814 (854)
.++|.+..++.++..|+...+
T Consensus 454 ~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 454 LQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655655433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=218.74 Aligned_cols=294 Identities=13% Similarity=0.026 Sum_probs=223.2
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 36 LYFQSRKFDECLD-LLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 36 ~~~~~g~y~~Al~-~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
.+...|+|++|++ .|++++.+.|.++ .+++++|.+++..+ ++.+++..+.+.++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~A~~~~~~al~--------------- 92 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG------DLPNAVLLFEAAVQ--------------- 92 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT------CHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC------CHHHHHHHHHHHHH---------------
Confidence 4567799999999 9999999988874 66999998887554 35567777777773
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLL 190 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~ 190 (854)
. +|+++..++++|.+|...|+|++|+++|+++++..+... .+++.
T Consensus 93 -----------------------------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~ 137 (368)
T 1fch_A 93 -----------------------------Q-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ-----TALMA 137 (368)
T ss_dssp -----------------------------S-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHH
T ss_pred -----------------------------h-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH-----HHHHH
Confidence 1 456778999999999999999999999999999654322 25788
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh
Q 003047 191 LLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT 270 (854)
Q Consensus 191 l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (854)
++.+|...|++++|+ ..+++++.+. ++. . .. +..
T Consensus 138 l~~~~~~~g~~~~A~---~~~~~~~~~~----~~~--------------------~--------~~---~~~-------- 171 (368)
T 1fch_A 138 LAVSFTNESLQRQAC---EILRDWLRYT----PAY--------------------A--------HL---VTP-------- 171 (368)
T ss_dssp HHHHHHHTTCHHHHH---HHHHHHHHTS----TTT--------------------G--------GG---CC---------
T ss_pred HHHHHHHcCCHHHHH---HHHHHHHHhC----cCc--------------------H--------HH---HHH--------
Confidence 999999999999998 5678777654 111 0 00 000
Q ss_pred hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 003047 271 LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNI 350 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~ 350 (854)
.+ .. . ... ..+.+...+ ..++ ..|++++|++.+++++.+
T Consensus 172 ~~-------~~------~-~~~----~~~~~~~~~----------------------~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 172 AE-------EG------A-GGA----GLGPSKRIL----------------------GSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp --------------------------------CTT----------------------HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HH-------HH------h-hhh----cccHHHHHH----------------------HHHh-hcccHHHHHHHHHHHHHh
Confidence 00 00 0 000 000011111 2233 678999999999999999
Q ss_pred cCCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 351 ARGKD--SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 351 ~~~P~--~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
. |+ ++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 211 ~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 280 (368)
T 1fch_A 211 D--PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL------ 280 (368)
T ss_dssp S--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred C--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 9 99 899999999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHh
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-----------PLLWLRLAECCLMALE 492 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-----------~~aw~~La~~~i~~~~ 492 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|++ +.+|..||.++...++
T Consensus 281 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 281 ----------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred ----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999999999 8999999999995444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=217.99 Aligned_cols=286 Identities=14% Similarity=0.032 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++.+|...|++++|++.+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLE-LQPN-NLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHH
Confidence 3456888899999999999999999999 99999999999999999999999999999999 7884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLLWL 481 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~aw~ 481 (854)
..+|++++|+.+|++++...+...... .........+.++|.++...|++++|+.+|++++.+.|+ ++.+|.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLV------KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHH------hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999854321000 000012345567799999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.+|.++.. .+ .++.|+.+|+
T Consensus 218 ~l~~~~~~---~g---------------------------------------------------------~~~~A~~~~~ 237 (365)
T 4eqf_A 218 GLGVLFHL---SG---------------------------------------------------------EFNRAIDAFN 237 (365)
T ss_dssp HHHHHHHH---HT---------------------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHH---CC---------------------------------------------------------CHHHHHHHHH
Confidence 99999883 10 2467999999
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+++.+.|...
T Consensus 238 ~al~~~p~~~---------------------------------------------------------------------- 247 (365)
T 4eqf_A 238 AALTVRPEDY---------------------------------------------------------------------- 247 (365)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCCCCH----------------------------------------------------------------------
Confidence 9999988743
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.++..+|.++..+|++.+|+.++++++. .|..+.++..+|.+|. .+|++++|+.+|+++
T Consensus 248 ---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 248 ---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI-----NLGAYREAVSNFLTA 307 (365)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHTCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----HCCCHHHHHHHHHHH
Confidence 2356789999999999999999999998 8888999988887554 689999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
+. .+... .. |. .+. .....+.++.+|+.++..+|+.+.|.++
T Consensus 308 l~--~~~~~------------------~~---------------~~--~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 308 LS--LQRKS------------------RN---------------QQ--QVP-HPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HH--HHHCC------------------------------------------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HH--hCccc------------------CC---------------Cc--ccc-hhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 93 11000 00 00 000 0011467889999999999999999999
Q ss_pred HHHHHhh
Q 003047 801 VTQALSI 807 (854)
Q Consensus 801 ~~~Al~~ 807 (854)
..+.+..
T Consensus 350 ~~~~l~~ 356 (365)
T 4eqf_A 350 NLGDLDV 356 (365)
T ss_dssp HTTCCGG
T ss_pred HHhhHHH
Confidence 8886554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=215.67 Aligned_cols=315 Identities=14% Similarity=0.044 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+..++..|..++..|+|++|+.+|++++++.|.++ .+++++|.+++..++ +.+++..+.+++....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~--- 78 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------YAKALEYHHHDLTLAR--- 78 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHH---
Confidence 466789999999999999999999999999999984 689999999886654 4446666666653210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
. ..+.+..+..++++|.+|...|+|++|+.+|++++...+...+
T Consensus 79 -~-----------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 122 (406)
T 3sf4_A 79 -T-----------------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122 (406)
T ss_dssp -H-----------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -h-----------------------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 0 0125667889999999999999999999999999997666544
Q ss_pred hh-HHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccC
Q 003047 182 TT-ALQICLLLLDVALACHD--------------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYS 240 (854)
Q Consensus 182 ~~-~~~~~l~l~~vy~~~~~--------------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (854)
.. ...++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 123 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~---~~~~~al~~~~~~~-~---------------- 182 (406)
T 3sf4_A 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV---DFYEENLSLVTALG-D---------------- 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH---HHHHHHHHHHHHTT-C----------------
T ss_pred ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH---HHHHHHHHHHHhcc-C----------------
Confidence 43 34467788999999999 99997 56677766541110 0
Q ss_pred CCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHH
Q 003047 241 SVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLK 320 (854)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (854)
....
T Consensus 183 ----------------------------------------------------------------------------~~~~ 186 (406)
T 3sf4_A 183 ----------------------------------------------------------------------------RAAQ 186 (406)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------cHHH
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~ 390 (854)
.......+.+|...|++++|++.+++++.+. |+... +++.+|.++...|++++|+++|++++.. .++.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 1133445778888999999999999999998 65543 8899999999999999999999999973 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....+++++|.+|..+|++++|+.+|++++.+.+.... .+....++.++|.+|...|++++|+.+|++++
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22668889999999999999999999999998543321 11236788999999999999999999999999
Q ss_pred HhcCCC------HHHHHHHHHHHHHHHhc
Q 003047 471 LVFYKQ------PLLWLRLAECCLMALEK 493 (854)
Q Consensus 471 ~l~P~~------~~aw~~La~~~i~~~~~ 493 (854)
.+.+.. ..++..+|.++...+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 995443 67899999999865553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=204.71 Aligned_cols=285 Identities=11% Similarity=0.061 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
....++..|..++..|+|++|+.+|+++++.+|+++.+++.+|.+++..++ +.+++..+.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~--------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK------DGLAIIALNHARML--------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---------
Confidence 345688999999999999999999999999999999999999998886543 45577777777731
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
+|++...++++|.+|...|++++|+++|+++++..+...+.
T Consensus 85 ------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 125 (327)
T 3cv0_A 85 ------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL--- 125 (327)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred ------------------------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH---
Confidence 34567799999999999999999999999999965544332
Q ss_pred HHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccc
Q 003047 186 QICLLL--------------LD-VALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTAD 250 (854)
Q Consensus 186 ~~~l~l--------------~~-vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (854)
...+ +. ++...|++++|+ .++++++... ++.
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~~~~~~----~~~------------------------- 171 (327)
T 3cv0_A 126 --GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR---TLLHAALEMN----PND------------------------- 171 (327)
T ss_dssp ----------------------CCTTSHHHHHHHH---HHHHHHHHHS----TTC-------------------------
T ss_pred --HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH---HHHHHHHhhC----CCC-------------------------
Confidence 2222 33 588889999998 4567766543 100
Q ss_pred cccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHH
Q 003047 251 ASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRF 330 (854)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~l 330 (854)
..+....+.+
T Consensus 172 ----------------------------------------------------------------------~~~~~~la~~ 181 (327)
T 3cv0_A 172 ----------------------------------------------------------------------AQLHASLGVL 181 (327)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0123345778
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
|...|++++|++.+++++... |+++.+++.+|.++...|++++|+++|++++. ..|. ...++.++|.+|..+|+++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALD-INPG-YVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhccHH
Confidence 888999999999999999999 99999999999999999999999999999999 6784 5788999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|+.+|++++...+........ ........+++++|.++...|++++|..+|++++...|+.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGE----ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC---------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccc----chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999985431100000 0000146899999999999999999999999999887753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-21 Score=203.23 Aligned_cols=277 Identities=14% Similarity=0.016 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
..++.+|..++..|++++|+.+|++++. .+|. .+.++..+|.+|...|++++|+.+|++++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 84 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ-AAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--------------- 84 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 4678899999999999999999999999 6784 6788999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.+....+++++|.++...|++++|+.+|++++.+.|++..+|..+...+..... ...+|.
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-- 144 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD-----------------LNVQSE-- 144 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH-----------------HHHHHH--
Confidence 344578899999999999999999999999999999998888777544321000 000000
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.. .......++.|..+|+.++.+.|...
T Consensus 145 -------------~~-------------~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------- 172 (327)
T 3cv0_A 145 -------------DF-------------FFAAPNEYRECRTLLHAALEMNPNDA-------------------------- 172 (327)
T ss_dssp --------------C-------------CTTSHHHHHHHHHHHHHHHHHSTTCH--------------------------
T ss_pred -------------hH-------------HHHHcccHHHHHHHHHHHHhhCCCCH--------------------------
Confidence 00 01112246889999999999887732
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALA 677 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~ 677 (854)
.++..+|.++...|++.+|+.
T Consensus 173 -----------------------------------------------------------~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 173 -----------------------------------------------------------QLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 235577889999999999999
Q ss_pred HHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCC
Q 003047 678 AARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAA 756 (854)
Q Consensus 678 ~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 756 (854)
++++++. .|..+..+..+|.+| ...|++++|+.++++++. .+
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~a~~--~~------------------------------ 236 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATL-----ANGNRPQEALDAYNRALD--IN------------------------------ 236 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HC------------------------------
T ss_pred HHHHHHHhCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH--cC------------------------------
Confidence 9999997 888888888887755 468999999999999993 11
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHh
Q 003047 757 AKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPR------------STEATLTAIYVDLM 824 (854)
Q Consensus 757 ~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~------------~~~a~~l~~y~~L~ 824 (854)
|. .+.+++++|.++..+|++++|.+++++++.+.|+ .+.++..++.++.+
T Consensus 237 --------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 237 --------PG----------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp --------TT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred --------CC----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 22 4678899999999999999999999999999999 78899999999999
Q ss_pred cCCHHHHHHHHHh
Q 003047 825 LGKSQEALAKLKY 837 (854)
Q Consensus 825 ~G~~~eA~~~lk~ 837 (854)
+|++++|..++++
T Consensus 299 ~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 299 MNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH
Confidence 9999999999986
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=212.07 Aligned_cols=299 Identities=12% Similarity=0.038 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHh
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
...+..++..|..++..|+|++|+.+|+++++..|+++ .+++++|.+++..++ +.+++..+.+++....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~- 117 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD------YNKAMQYHKHDLTLAK- 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHH-
Confidence 57788999999999999999999999999999999997 589999999887754 4446666666664210
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI 179 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~ 179 (854)
. ..+++..+..++++|.+|+.+|+|++|+.+|++++...+..
T Consensus 118 ---~-----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 118 ---S-----------------------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp ---H-----------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---H-----------------------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 0 01256788899999999999999999999999999976554
Q ss_pred chh-hHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCC
Q 003047 180 DET-TALQICLLLLDVALACHD-----------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSS 241 (854)
Q Consensus 180 ~e~-~~~~~~l~l~~vy~~~~~-----------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (854)
.+. ....++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~---~~~~~al~~~~~~~-~----------------- 218 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV---EFYQENLKLMRDLG-D----------------- 218 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH---HHHHHHHHHHHHHT-C-----------------
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH---HHHHHHHHHHHHcC-C-----------------
Confidence 443 344577789999999999 88887 56677765531100 0
Q ss_pred CCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH
Q 003047 242 VPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL 321 (854)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (854)
.....
T Consensus 219 ---------------------------------------------------------------------------~~~~~ 223 (411)
T 4a1s_A 219 ---------------------------------------------------------------------------RGAQG 223 (411)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 00011
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----C
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----G 390 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~ 390 (854)
......+.+|...|++++|++.+++++.+. |+... +++.+|.+|...|++++|+++|++++.. .+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~ 300 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL-AVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-HHHcCCHH
Confidence 234456888899999999999999999998 65433 8899999999999999999999999983 22 1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....++.++|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD----------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23678889999999999999999999999998554321 11235688999999999999999999999999
Q ss_pred HhcCCC
Q 003047 471 LVFYKQ 476 (854)
Q Consensus 471 ~l~P~~ 476 (854)
.+.+..
T Consensus 371 ~~~~~~ 376 (411)
T 4a1s_A 371 QLAXXX 376 (411)
T ss_dssp HHCCHH
T ss_pred HHHhhc
Confidence 999873
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-21 Score=213.80 Aligned_cols=239 Identities=10% Similarity=0.001 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+++.+|...|++++|++.+++++.++ |++..+++.+|.++...|+ +++|+++|++++. .+|. +..+|+++|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HCCC-CHHHHHHHH
Confidence 356677899999999999999999999999 9999999999999999997 9999999999999 7994 688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|..+|++++|+.+|+++|.+ .+.+..+|+++|.++..+|++++|+.+|+++|.++|+++.+|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l----------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~ 237 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ----------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh----------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999 456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 003047 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCL 560 (854)
Q Consensus 481 ~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l 560 (854)
+++|.++... .+ ..+ . ..++.++.+|
T Consensus 238 ~~lg~~l~~l--~~-------------------------------------~~~-----------e----A~~~~el~~~ 263 (382)
T 2h6f_A 238 NQRYFVISNT--TG-------------------------------------YND-----------R----AVLEREVQYT 263 (382)
T ss_dssp HHHHHHHHHT--TC-------------------------------------SCS-----------H----HHHHHHHHHH
T ss_pred HHHHHHHHHh--cC-------------------------------------cch-----------H----HHHHHHHHHH
Confidence 9999998721 11 000 0 0135568999
Q ss_pred HHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhc
Q 003047 561 LNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSL 640 (854)
Q Consensus 561 ~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i 640 (854)
++|+.+.|++.
T Consensus 264 ~~Al~l~P~~~--------------------------------------------------------------------- 274 (382)
T 2h6f_A 264 LEMIKLVPHNE--------------------------------------------------------------------- 274 (382)
T ss_dssp HHHHHHSTTCH---------------------------------------------------------------------
T ss_pred HHHHHHCCCCH---------------------------------------------------------------------
Confidence 99999999954
Q ss_pred cchhhHhHHhhHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhc-----C-CHHH
Q 003047 641 SYYEDVCRRENQMIKQALLANLAYVELEME--NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLL-----N-RPKE 712 (854)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~l~~la~v~l~lg--~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~l-----g-r~~e 712 (854)
.++..++.++..+| ++.+|+..++++-..|+++.++..||.+|... ... + .+++
T Consensus 275 ----------------~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~--~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 275 ----------------SAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM--LENQCDNKEDILNK 336 (382)
T ss_dssp ----------------HHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH--HHTTCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--hcccccchHHHHHH
Confidence 23567788888888 79999999999833788999999999887631 100 2 3699
Q ss_pred HHHHHHhh-h
Q 003047 713 AAEHFSMY-L 721 (854)
Q Consensus 713 Al~~l~~~-l 721 (854)
|+++|++. +
T Consensus 337 A~~~~~~l~~ 346 (382)
T 2h6f_A 337 ALELCEILAK 346 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 99999998 7
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=216.05 Aligned_cols=254 Identities=8% Similarity=-0.055 Sum_probs=215.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK-YHTSSVFLSKALSNSASL 426 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~-~~eAi~~f~kAL~~~~~l 426 (854)
+.+. |++..+++.+|.++...|++++|+++|++++. .+|. +..+|+++|.+|..+|+ +++|+.+|+++|.+
T Consensus 90 i~~~--p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---- 161 (382)
T 2h6f_A 90 IIYS--DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---- 161 (382)
T ss_dssp ECCC--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred hhCC--hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----
Confidence 4556 89999999999999999999999999999999 7994 68899999999999997 99999999999998
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGS 506 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~ 506 (854)
.+.+..+|+++|.++..+|++++|+.+|+++|.++|+++.+|+++|.++...++
T Consensus 162 ------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-------------- 215 (382)
T 2h6f_A 162 ------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-------------- 215 (382)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------
T ss_pred ------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--------------
Confidence 456789999999999999999999999999999999999999999999883211
Q ss_pred ccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccc
Q 003047 507 EVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVE 586 (854)
Q Consensus 507 ~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~ 586 (854)
++.|+.+|++||.+.|...
T Consensus 216 ----------------------------------------------~~eAl~~~~~al~l~P~~~--------------- 234 (382)
T 2h6f_A 216 ----------------------------------------------WDNELQYVDQLLKEDVRNN--------------- 234 (382)
T ss_dssp ----------------------------------------------CTTHHHHHHHHHHHCTTCH---------------
T ss_pred ----------------------------------------------hHHHHHHHHHHHHhCCCCH---------------
Confidence 1349999999999999854
Q ss_pred ccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHH
Q 003047 587 ESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVE 666 (854)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~ 666 (854)
.++.++|+++
T Consensus 235 ----------------------------------------------------------------------~a~~~lg~~l 244 (382)
T 2h6f_A 235 ----------------------------------------------------------------------SVWNQRYFVI 244 (382)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2367789999
Q ss_pred HH-cCCHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 667 LE-MENPVKA-----LAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLN--RPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 667 l~-lg~~~~A-----l~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lg--r~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
.. .|.+.+| +.++++++. .|.+..+|.+++.+|. ..| ++++|++++... . .+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~-----~~g~~~~~~a~~~~~~~-~--~~----------- 305 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-----DRGLSKYPNLLNQLLDL-Q--PS----------- 305 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-----TTCGGGCHHHHHHHHHH-T--TT-----------
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----ccCccchHHHHHHHHHh-c--cC-----------
Confidence 99 4554777 599999997 8999999988887654 566 699999988775 2 11
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-Hhh
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQG--------E-FERAHHFVTQA-LSI 807 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g--------~-~e~A~~~~~~A-l~~ 807 (854)
|. ...++..||.+|..+| + +++|+++|+++ +++
T Consensus 306 ---------------------------p~----------~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 306 ---------------------------HS----------SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp ---------------------------CC----------CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------CC----------CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 22 4677888999999985 3 69999999999 999
Q ss_pred CCCCHHHHHHHHHHH
Q 003047 808 LPRSTEATLTAIYVD 822 (854)
Q Consensus 808 ~P~~~~a~~l~~y~~ 822 (854)
+|.....+..++-.+
T Consensus 349 DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 349 DTIRKEYWRYIGRSL 363 (382)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 999876666555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-21 Score=200.96 Aligned_cols=298 Identities=14% Similarity=0.050 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDD----PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~----~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+..|+..|..++..|+|++|+.+|+++++..|.+ +.+++++|.+++..++ +.+++..+.+++....
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~--- 74 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------YAKALEYHHHDLTLAR--- 74 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhh---
Confidence 35689999999999999999999999999999999 4788999999886654 3446666666553210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
. ..+.+..+..++++|.+|+..|+|++|+++|+++++..+...+
T Consensus 75 -~-----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 75 -T-----------------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp -H-----------------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -c-----------------------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence 0 0124567889999999999999999999999999997776655
Q ss_pred hh-HHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccC
Q 003047 182 TT-ALQICLLLLDVALACHD--------------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYS 240 (854)
Q Consensus 182 ~~-~~~~~l~l~~vy~~~~~--------------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (854)
.. ...++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~---~~~~~a~~~~~~~~-~---------------- 178 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV---DLYEENLSLVTALG-D---------------- 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH---HHHHHHHHHHHHHT-C----------------
T ss_pred chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH---HHHHHHHHHHHhcC-C----------------
Confidence 43 34467778999999999 88887 45676665431100 0
Q ss_pred CCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHH
Q 003047 241 SVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLK 320 (854)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (854)
....
T Consensus 179 ----------------------------------------------------------------------------~~~~ 182 (338)
T 3ro2_A 179 ----------------------------------------------------------------------------RAAQ 182 (338)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0001
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS------SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~------~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~ 390 (854)
..+....+.+|...|++++|++.+++++.+. |.. ..+++.+|.++...|++++|+++|++++.. .++.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 1234456788889999999999999999987 543 238899999999999999999999999873 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....++.++|.+|..+|++++|+.+|++++...+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22668889999999999999999999999998554321 11235688899999999999999999999999
Q ss_pred HhcCCC
Q 003047 471 LVFYKQ 476 (854)
Q Consensus 471 ~l~P~~ 476 (854)
.+.+..
T Consensus 331 ~~~~~~ 336 (338)
T 3ro2_A 331 EISREV 336 (338)
T ss_dssp HC----
T ss_pred HHHHhh
Confidence 998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-20 Score=189.04 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
+.++.++..|..++..|+|++|+.+|+++++.+ .++.+++++|.+++..++ +.+++..+.+++...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~------~~~A~~~~~~a~~~~------- 68 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE------YETAISTLNDAVEQG------- 68 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc------HHHHHHHHHHHHHhC-------
Confidence 568899999999999999999999999999999 999999999999886653 455777777766421
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+. ...+.+..+..++++|.+|...|+|++|+++|+++++..+.
T Consensus 69 ~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------ 111 (258)
T 3uq3_A 69 RE-------------------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ 111 (258)
T ss_dssp HH-------------------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred cc-------------------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------
Confidence 00 00012223667888888888888888888888777773222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
..++...|
T Consensus 112 -------~~~~~~~~----------------------------------------------------------------- 119 (258)
T 3uq3_A 112 -------ADILTKLR----------------------------------------------------------------- 119 (258)
T ss_dssp -------HHHHHHHH-----------------------------------------------------------------
T ss_pred -------hHHHHHHh-----------------------------------------------------------------
Confidence 12222233
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
++++|++.+
T Consensus 120 -----------------------------------------------------------------------~~~~a~~~~ 128 (258)
T 3uq3_A 120 -----------------------------------------------------------------------NAEKELKKA 128 (258)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 334455555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
++++... |+++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 129 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 202 (258)
T 3uq3_A 129 EAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-- 202 (258)
T ss_dssp HHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 5555666 77778888889999999999999999999998 6774 5788889999999999999999999999997
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF------YKQPLLWLRLAEC 486 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~------P~~~~aw~~La~~ 486 (854)
.+....+++++|.++...|++++|+.+|+++++++ |++..+|..|+.|
T Consensus 203 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 --------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 34457889999999999999999999999999999 9999999888876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-20 Score=193.16 Aligned_cols=149 Identities=9% Similarity=-0.068 Sum_probs=114.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.+|...|++++|++.+++++.+. |+++.+++.+|...+..+++++|+++|++++. .+|. ...++..+|.++..+|
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~p~-~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE-LKPN-IYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcc-chHHHHHHHHHHHHcC
Confidence 334444555555555555555556 88888888899555566699999999999999 7884 5788999999999999
Q ss_pred C---HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 408 K---YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 408 ~---~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
+ +++|+.+|++++.........+ ......+++++|.+|...|++++|+++|+++++++|+++.+|..++
T Consensus 191 ~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 191 PDTKQGLAKPYYEKLIEVCAPGGAKY--------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TTCSSCTTHHHHHHHHHHHGGGGGGG--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHhcccccc--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 9 9999999999999843221000 0112478999999999999999999999999999999999999999
Q ss_pred HHHH
Q 003047 485 ECCL 488 (854)
Q Consensus 485 ~~~i 488 (854)
.+..
T Consensus 263 ~~~~ 266 (272)
T 3u4t_A 263 MKLE 266 (272)
T ss_dssp ----
T ss_pred hhhc
Confidence 8766
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=216.11 Aligned_cols=385 Identities=14% Similarity=0.036 Sum_probs=252.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
..|..+++.|+|++|+++|+++.+. +++.++++||.+++..+ .+.++.+++..+++++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g---~~~d~~~A~~~~~~A~~---------------- 66 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTR---DPAQIKQAEATYRAAAD---------------- 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccC---CCCCHHHHHHHHHHHHh----------------
Confidence 4578889999999999999999775 57888999998886543 34344567777777662
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-----cHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-----EYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-----~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
. ++..++++|.+++..+ ++++|+++|+++.+.-. .+
T Consensus 67 -------------------------------~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~----- 107 (452)
T 3e4b_A 67 -------------------------------T-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GN----- 107 (452)
T ss_dssp ------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SS-----
T ss_pred -------------------------------C-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HH-----
Confidence 1 3457889999777665 88999999999888321 11
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+++.|+.+|...+..+++...+..++++..
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------------------------------------------------- 137 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------------------------------------------------- 137 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--------------------------------------------------
Confidence 467778877755554444322222222211
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
T Consensus 138 -------------------------------------------------------------------------------- 137 (452)
T 3e4b_A 138 -------------------------------------------------------------------------------- 137 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRN----HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA---KYHTSSVFLSKA 419 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~----~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g---~~~eAi~~f~kA 419 (854)
+.++.+++.+|.+|...+. .++|..++..+.. .+| .++++||.+|...| ++++|+.+|+++
T Consensus 138 -------~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 138 -------AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTD----ICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 2344566666666666663 3444445555555 455 26788999999999 999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC----GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGL 495 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~----Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~ 495 (854)
... .+..+..++++|.+|... +++++|+.+|+++. |+++.++++||.++.. ..
T Consensus 206 a~~----------------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~---~~- 262 (452)
T 3e4b_A 206 VSR----------------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYD---FP- 262 (452)
T ss_dssp HHT----------------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH---SG-
T ss_pred HHC----------------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh---CC-
Confidence 887 345567778999998766 68999999999987 8999999999988551 10
Q ss_pred cCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc
Q 003047 496 VAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS 575 (854)
Q Consensus 496 ~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~ 575 (854)
. ...++.|..+|++|.... +.
T Consensus 263 ~-----------------------------------------------------~~d~~~A~~~~~~Aa~~g--~~---- 283 (452)
T 3e4b_A 263 E-----------------------------------------------------LGDVEQMMKYLDNGRAAD--QP---- 283 (452)
T ss_dssp G-----------------------------------------------------GCCHHHHHHHHHHHHHTT--CH----
T ss_pred C-----------------------------------------------------CCCHHHHHHHHHHHHHCC--CH----
Confidence 0 003477999999887322 11
Q ss_pred ccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH
Q 003047 576 KFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655 (854)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 655 (854)
T Consensus 284 -------------------------------------------------------------------------------- 283 (452)
T 3e4b_A 284 -------------------------------------------------------------------------------- 283 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCC
Q 003047 656 QALLANLAYVELEME-----NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLP 730 (854)
Q Consensus 656 ~~~l~~la~v~l~lg-----~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~ 730 (854)
.++.+||.++. .| |+.+|+.+++++. +.++.++..||.+|.-- .--..++++|+.+|+++.. .
T Consensus 284 -~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~Aa~--~----- 351 (452)
T 3e4b_A 284 -RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRG-YLGKVYPQKALDHLLTAAR--N----- 351 (452)
T ss_dssp -HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTT-TTSSCCHHHHHHHHHHHHT--T-----
T ss_pred -HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCC-CCCCcCHHHHHHHHHHHHh--h-----
Confidence 12456777777 66 9999999999988 88899999999887620 0002289999999999882 1
Q ss_pred CCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 003047 731 FSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALS 806 (854)
Q Consensus 731 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~ 806 (854)
. .+.+.++||.+|.. .+|+++|..+|++|.+
T Consensus 352 -----------------------------------g----------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 352 -----------------------------------G----------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp -----------------------------------T----------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred -----------------------------------C----------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 0 24567889999985 4699999999999988
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 807 ILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 807 ~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
..+......+..+...+..++..+|..++++
T Consensus 387 ~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 387 QDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6544444444444444556677788888876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-20 Score=191.62 Aligned_cols=259 Identities=16% Similarity=0.117 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
++.++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++.. + .+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~----~~------ 69 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-KKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V----NA------ 69 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S----CT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c----Cc------
Confidence 34556666666666666666666666666 4553 3445666666666666666666666666663 1 00
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccc
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKG 516 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g 516 (854)
......+++++|.++...|++++|+.+|++++.++|+++.+|..+|.++. ..+
T Consensus 70 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---~~~---------------------- 122 (272)
T 3u4t_A 70 --TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY---NKG---------------------- 122 (272)
T ss_dssp --TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---HTT----------------------
T ss_pred --hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---Hcc----------------------
Confidence 01124456666666666666666776677666666666666666666665 110
Q ss_pred ccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccc
Q 003047 517 KWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 517 ~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
.++.|+.+|++|+.+.|...
T Consensus 123 -----------------------------------~~~~A~~~~~~al~~~~~~~------------------------- 142 (272)
T 3u4t_A 123 -----------------------------------NFPLAIQYMEKQIRPTTTDP------------------------- 142 (272)
T ss_dssp -----------------------------------CHHHHHHHHGGGCCSSCCCH-------------------------
T ss_pred -----------------------------------CHHHHHHHHHHHhhcCCCcH-------------------------
Confidence 13556666666666654422
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL 676 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al 676 (854)
.++..+|.+....+++.+|+
T Consensus 143 ------------------------------------------------------------~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 143 ------------------------------------------------------------KVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 11334453334445667777
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNR---PKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNG 752 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr---~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 752 (854)
.++++++. .|+.+..+..+|.+|. .+|+ +++|+.++++++. .. ..
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~A~~~~~~a~~--~~---------------~~--------- 211 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANA-----AQDPDTKQGLAKPYYEKLIE--VC---------------AP--------- 211 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH-----HHSTTCSSCTTHHHHHHHHH--HH---------------GG---------
T ss_pred HHHHHHHHhCccchHHHHHHHHHHH-----HcCcchhhHHHHHHHHHHHH--HH---------------hc---------
Confidence 77766665 6666666666666444 4577 8889999988883 10 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 753 GPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 753 ~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
.|. +. ......++.+||.++..+|++++|.++++++++++|+++.++-.+..+.
T Consensus 212 -----------~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 212 -----------GGA---KY--KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp -----------GGG---GG--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred -----------ccc---cc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 011 00 1224678999999999999999999999999999999998887776664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=191.63 Aligned_cols=199 Identities=17% Similarity=0.035 Sum_probs=163.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|.+++..|++++|+..|++++. .+|. .+.+++++|.+|.++|++++|+.+|++++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-ENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR----------- 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 88999999999999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHC-----------CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLAC-----------GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSL 502 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~-----------Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~ 502 (854)
.|....+++++|.++... |++++|+.+|+++++++|+++.+|+.+|.++. ..+
T Consensus 69 -----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~---~~g-------- 132 (217)
T 2pl2_A 69 -----TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA---LLG-------- 132 (217)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTT--------
T ss_pred -----CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---HcC--------
Confidence 355678999999999999 99999999999999999999999999999988 210
Q ss_pred CCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCC
Q 003047 503 SDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSN 582 (854)
Q Consensus 503 ~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~ 582 (854)
.++.|+.+|++|+.+. ...
T Consensus 133 -------------------------------------------------~~~~A~~~~~~al~~~-~~~----------- 151 (217)
T 2pl2_A 133 -------------------------------------------------ERDKAEASLKQALALE-DTP----------- 151 (217)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHC-CCH-----------
T ss_pred -------------------------------------------------ChHHHHHHHHHHHhcc-cch-----------
Confidence 2477999999999998 422
Q ss_pred CcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHH
Q 003047 583 SSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANL 662 (854)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~l 662 (854)
.++.++
T Consensus 152 --------------------------------------------------------------------------~~~~~l 157 (217)
T 2pl2_A 152 --------------------------------------------------------------------------EIRSAL 157 (217)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 235678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 663 AYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 663 a~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
|.++..+|++.+|+.++++++. .|+++.++..+|.+| ..+|++++|+.++++.-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL-----LLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-----TC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHccCHHHHHHHHHHHh
Confidence 9999999999999999999998 899999998888754 57899999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=202.82 Aligned_cols=313 Identities=15% Similarity=0.079 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
..+.++.++...|++++|+..+++++.+. |+++ .+++.+|.+++..|++++|+++|++++.. .++...+.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34557889999999999999999999999 9995 57889999999999999999999999873 12224577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC----------------
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---------------- 458 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---------------- 458 (854)
++.++|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|...|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 8999999999999999999999999998654321 01235689999999999999
Q ss_pred ----cHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 459 ----PVLAARCFQKSSLV------FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 459 ----~eeAl~~y~kAL~l------~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+++|+.+|++++.+ .|....+|..+|.++.. .+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g---------------------------------- 201 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LG---------------------------------- 201 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---cc----------------------------------
Confidence 99999999999998 44446678888888773 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|+.|+.+.|.....
T Consensus 202 -----------------------~~~~A~~~~~~al~~~~~~~~~----------------------------------- 223 (406)
T 3sf4_A 202 -----------------------NFRDAVIAHEQRLLIAKEFGDK----------------------------------- 223 (406)
T ss_dssp -----------------------BHHHHHHHHHHHHHHHHHTTCH-----------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 2367999999999998774310
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.....++..+|.++..+|++.+|+.++++++. .+.
T Consensus 224 --------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 224 --------------------------------------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 00114577889999999999999999999986 332
Q ss_pred C-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 688 C-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 688 ~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
. .......+....+.++..+|++++|+.++++++. .. ... +
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~---------------~~~--------------------~- 301 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IA---------------QEL--------------------N- 301 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH---------------HHT--------------------T-
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HH---------------Hhc--------------------C-
Confidence 2 1122223333445566789999999999999993 10 000 0
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHH
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------TEATLTAIYVDLMLGKSQE 830 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~l~~y~~L~~G~~~e 830 (854)
. ....+.++.++|.++..+|++++|.+++++++++.+.. ..++..++.++...|+...
T Consensus 302 ----~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 ----D--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp ----C--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ----C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 0 01257888999999999999999999999999885422 5677788888888887743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-19 Score=191.32 Aligned_cols=265 Identities=13% Similarity=0.108 Sum_probs=210.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDD-PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~-~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
...-.+|..|+|++|++.++++....|.+ .++..-++.+|+..++ +..++..++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~------~~~al~~~~~------------------ 59 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRK------YGVVLDEIKP------------------ 59 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTC------HHHHHHHSCT------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCC------HHHHHHHhcc------------------
Confidence 35567899999999999999998888887 4677777877775543 2223332211
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcc-CCCchhhHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNI-EPIDETTALQICL 189 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~-~~~~e~~~~~~~l 189 (854)
. ++....++..+|..|...+++++|++.|++++..- .|-+. .+.+
T Consensus 60 -----------------------------~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~----~~~~ 105 (291)
T 3mkr_A 60 -----------------------------S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT----TFLL 105 (291)
T ss_dssp -----------------------------T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----HHHH
T ss_pred -----------------------------c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----HHHH
Confidence 0 23356788888999999999999999999998742 23332 2578
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
.++.+|...|++++|+..+ ++ ++.
T Consensus 106 ~la~~~~~~g~~~~Al~~l---~~---------~~~-------------------------------------------- 129 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTL---HQ---------GDS-------------------------------------------- 129 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHH---TT---------CCS--------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHH---hC---------CCC--------------------------------------------
Confidence 8899999999999998644 32 000
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
......++++|+.+|++++|++.+++++.
T Consensus 130 ---------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 130 ---------------------------------------------------LECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01333468899999999999999999999
Q ss_pred hcCCCCCHHHHHHHH--HHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 350 IARGKDSSLALFLKS--QLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 350 ~~~~P~~~~a~~lla--~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
.+ |++....+..+ .++...|++++|+.+|++++. ..|. .+.+++++|.+|.++|++++|+.+|+++|..
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----- 229 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-KCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDK----- 229 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 99 99987666555 344455899999999999999 6884 6889999999999999999999999999998
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHhcCCCHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL-AARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee-Al~~y~kAL~l~P~~~~aw~ 481 (854)
.|.++.+++|+|.++...|++++ +.++++++++++|+++.+..
T Consensus 230 -----------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 230 -----------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp -----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 35578899999999999999977 56899999999999998754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=193.26 Aligned_cols=282 Identities=9% Similarity=-0.011 Sum_probs=227.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
|..+-.+..|++.+|+.+++++.... |++ .++.+.++..|...|++++|+..++.. +| ....++..++.+|.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~-~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SA-PELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CC-hhHHHHHHHHHHHc
Confidence 45566777999999999999988888 887 468889999999999999999977552 33 24667888999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
..+++++|++.|++.+.... .|.+..+++.+|.++...|++++|+++|++ |+++.+|..+|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~--------------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~ 137 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSV--------------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTV 137 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCC--------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccc--------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHH
Confidence 99999999999999987510 144678899999999999999999999998 99999999999
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.++. +.+ .++.|..+|++++
T Consensus 138 ~~~~---~~g---------------------------------------------------------~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 138 QILL---KLD---------------------------------------------------------RLDLARKELKKMQ 157 (291)
T ss_dssp HHHH---HTT---------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHH---HCC---------------------------------------------------------CHHHHHHHHHHHH
Confidence 9888 221 2477999999999
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|.....
T Consensus 158 ~~~p~~~~~----------------------------------------------------------------------- 166 (291)
T 3mkr_A 158 DQDEDATLT----------------------------------------------------------------------- 166 (291)
T ss_dssp HHCTTCHHH-----------------------------------------------------------------------
T ss_pred hhCcCcHHH-----------------------------------------------------------------------
Confidence 998773210
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.+- ..+ ..++...|++.+|+.++++++. .|+++..+..+|.+ ++.+|++++|+.+|++++.
T Consensus 167 --------~l~-~a~---~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~-----~~~~g~~~eA~~~l~~al~- 228 (291)
T 3mkr_A 167 --------QLA-TAW---VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC-----HMAQGRWEAAEGVLQEALD- 228 (291)
T ss_dssp --------HHH-HHH---HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHH-
T ss_pred --------HHH-HHH---HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-
Confidence 000 001 1223456999999999999997 89999999888874 4579999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFER-AHHFVT 802 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~-A~~~~~ 802 (854)
.+ |. .+.+++|+|.++..+|++++ +.++++
T Consensus 229 -~~--------------------------------------p~----------~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 229 -KD--------------------------------------SG----------HPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------CHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 33 57789999999999999976 678999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 803 QALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835 (854)
Q Consensus 803 ~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~l 835 (854)
+++++.|+++.+... ..+.+.|+++..-+
T Consensus 260 ~~~~~~P~~~~~~d~----~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 260 QLKDAHRSHPFIKEY----RAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHCTTCHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHH----HHHHHHHHHHHHHc
Confidence 999999999987653 45788888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=178.34 Aligned_cols=216 Identities=9% Similarity=-0.058 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
..+..++++|.+++..|+|++|+++|+++++.. ... .+++.++.+|...|++++|+ .++++++.+.....+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~~~~~~~~~~~~~A~---~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-----TYLNNRAAAEYEKGEYETAI---STLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-----HHHHHHHHHHHHcccHHHHH---HHHHHHHHhCccccc
Confidence 467799999999999999999999999999965 222 36888999999999999998 567777765310000
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+
T Consensus 74 ~------------------------------------------------------------------------------- 74 (258)
T 3uq3_A 74 D------------------------------------------------------------------------------- 74 (258)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
...........+.+|...|++++|++.+++++.+. |+ +.++...|++++|++.++++
T Consensus 75 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 75 -------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT--------ADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch--------hHHHHHHhHHHHHHHHHHHH
Confidence 00011244557888999999999999999999999 87 57788899999999999999
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
+. .+| ..+.++.++|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+
T Consensus 132 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 132 AY-VNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HH-CCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH-cCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHhCCHHHHH
Confidence 99 677 46789999999999999999999999999998 3446789999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|++++.++|+++.+|..+|.++.
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=183.78 Aligned_cols=200 Identities=16% Similarity=0.059 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
|.++..++++|.+++..|+|++|+..|+++++.-+...+ +++.++.+|...|++++|+ ..|++++.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~lg~~~~~~g~~~~A~---~~~~~al~~~---- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE-----ALYWLARTQLKLGLVNPAL---ENGKTLVART---- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-----HHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHH---HHHHHHHHhC----
Confidence 456779999999999999999999999999995444333 5888999999999999998 5778888764
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
|+. .. ++
T Consensus 70 P~~------------------------------~~-------------------------------------------a~ 76 (217)
T 2pl2_A 70 PRY------------------------------LG-------------------------------------------GY 76 (217)
T ss_dssp TTC------------------------------HH-------------------------------------------HH
T ss_pred CCc------------------------------HH-------------------------------------------HH
Confidence 211 00 11
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-----------RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR 371 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-----------~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g 371 (854)
.+ .+.+|..+ |++++|+..+++++.++ |+++.+++.+|.++...|
T Consensus 77 ~~----------------------lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 77 MV----------------------LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HH----------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HH----------------------HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcC
Confidence 22 23344444 99999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGL 451 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~ 451 (854)
++++|++.|++++. .+ ..+.+++++|.+|..+|++++|+.+|++++.. .|.+..+++++|.
T Consensus 133 ~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~~~~~la~ 193 (217)
T 2pl2_A 133 ERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ----------------APKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHH
Confidence 99999999999999 55 35789999999999999999999999999998 3556789999999
Q ss_pred HHHHCCCcHHHHHHHHHHH
Q 003047 452 QYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 452 ~ll~~Gk~eeAl~~y~kAL 470 (854)
++...|++++|+.+|+++-
T Consensus 194 ~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTC---------------
T ss_pred HHHHccCHHHHHHHHHHHh
Confidence 9999999999999999864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=183.23 Aligned_cols=294 Identities=14% Similarity=0.074 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
..+.++.++...|++++|+..+++++... |+++ .+++.+|.+++..|++++|++++++++.. .++...+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34557999999999999999999999999 9994 67889999999999999999999998873 12223467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC----------------
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---------------- 458 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---------------- 458 (854)
++..+|.+|..+|++++|+.+|++++...+.... ......+++++|.++...|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 8899999999999999999999999998554321 01235688999999999999
Q ss_pred ----cHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 459 ----PVLAARCFQKSSLVF------YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 459 ----~eeAl~~y~kAL~l~------P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+++|+.+|++++.+. |..+.+|..+|.++.. .+
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~---------------------------------- 197 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LG---------------------------------- 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hC----------------------------------
Confidence 999999999999873 3445578888887772 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|++|+.+.+.....
T Consensus 198 -----------------------~~~~A~~~~~~a~~~~~~~~~~----------------------------------- 219 (338)
T 3ro2_A 198 -----------------------NFRDAVIAHEQRLLIAKEFGDK----------------------------------- 219 (338)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTCH-----------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 2467999999999887763210
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.....++..+|.++...|++.+|+.++++++. .+.
T Consensus 220 --------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 220 --------------------------------------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 00113577889999999999999999999986 222
Q ss_pred C-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 688 C-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 688 ~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
. .......+....+.++..+|++++|+.++++++. .. ... . .+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~---------------~~~---~---------------~~- 299 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IA---------------QEL---K---------------DR- 299 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH---------------HHH---T---------------CH-
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HH---------------Hhc---C---------------Cc-
Confidence 2 1222233334455567789999999999999993 10 000 0 00
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
...+.++.+||.++..+|++++|.+++++++.+.+..
T Consensus 300 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 --------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred --------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1157788999999999999999999999999987643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=191.90 Aligned_cols=293 Identities=14% Similarity=0.065 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-CCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----T-EMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~-dp~~~a 393 (854)
..+..+..+...|++++|++.+++++.+. |+++ .+++.+|.+|+..|++++|+++|++++.. . .| ...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~ 126 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL-GEA 126 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch-HHH
Confidence 34467899999999999999999999999 9997 57899999999999999999999999873 1 34 457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---------------
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK--------------- 458 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk--------------- 458 (854)
.+++++|.+|..+|++++|+.+|++++...+.... .+....+++++|.+|...|+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD----------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc----------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 78999999999999999999999999998544321 12346789999999999999
Q ss_pred --cHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCC
Q 003047 459 --PVLAARCFQKSSLVFY------KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530 (854)
Q Consensus 459 --~eeAl~~y~kAL~l~P------~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~ 530 (854)
+++|+.+|++++.+.+ ....+|..+|.++. ..+
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g------------------------------------ 237 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY---LLG------------------------------------ 237 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HTT------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcC------------------------------------
Confidence 9999999999998863 33457888888877 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccc
Q 003047 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610 (854)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (854)
.++.|..+|++|+.+.|.....
T Consensus 238 ---------------------~~~~A~~~~~~al~~~~~~~~~------------------------------------- 259 (411)
T 4a1s_A 238 ---------------------DFQAAIEHHQERLRIAREFGDR------------------------------------- 259 (411)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHTCH-------------------------------------
T ss_pred ---------------------ChHHHHHHHHHHHHHHHhcCCc-------------------------------------
Confidence 2477999999999998873210
Q ss_pred ccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCC-
Q 003047 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDC- 688 (854)
Q Consensus 611 ~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~- 688 (854)
.....++..+|.++..+|++.+|+.++++++. .+..
T Consensus 260 ------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 260 ------------------------------------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 01124577889999999999999999999996 3322
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 003047 689 SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDT 768 (854)
Q Consensus 689 ~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~ 768 (854)
...........++.++..+|++++|+.++++++. .. . .. +. +
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-----------~----~~---~~---------------~--- 339 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA--IA-----------Q----EL---GD---------------R--- 339 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH-----------H----HH---TC---------------H---
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HH-----------H----HC---CC---------------h---
Confidence 1112222333445566689999999999999993 10 0 00 00 0
Q ss_pred CCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 769 MFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 769 ~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
...+.++.+||.+|..+|++++|.+++++++++.+..
T Consensus 340 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 340 ------IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 1157789999999999999999999999999997644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-17 Score=188.03 Aligned_cols=437 Identities=9% Similarity=-0.050 Sum_probs=294.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCccccc
Q 003047 49 LLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQ 128 (854)
Q Consensus 49 ~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (854)
+|+++++.+|.+..+|..++.. ... .++.++...+.+++.
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~--~~~-----~~~~~a~~~~e~al~--------------------------------- 40 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE--AQN-----QPIDKARKTYERLVA--------------------------------- 40 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH--HHS-----SCHHHHHHHHHHHHT---------------------------------
T ss_pred ChhhHhhhCCCCHHHHHHHHHH--HHh-----CCHHHHHHHHHHHHH---------------------------------
Confidence 3688899999999999998853 322 234445666666662
Q ss_pred ccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHH-HHHHHccCHHHHHH-
Q 003047 129 VSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLL-DVALACHDAFRSAD- 206 (854)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~-~vy~~~~~~~kA~~- 206 (854)
. .|.+..+|+..+..+...|++++|..+|+++++..+ ..+ +.+.++ .+....|++++|.+
T Consensus 41 -----------~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~-----lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 41 -----------Q-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID-----LWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp -----------T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH-----HHHHHHHHHHHHTTTSTTHHHH
T ss_pred -----------H-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH-----HHHHHHHHHHHHccchhhHHHH
Confidence 1 566788999999999999999999999999999764 222 344444 45556788888875
Q ss_pred HHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 003047 207 VLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSS 286 (854)
Q Consensus 207 ~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (854)
+...|++++... ..+++ ....|.. .+.|+...
T Consensus 103 ~~~~~~~al~~~-g~~~~-------------------------------~~~~w~~------------~~~~~~~~---- 134 (530)
T 2ooe_A 103 MAQAYDFALDKI-GMEIM-------------------------------SYQIWVD------------YINFLKGV---- 134 (530)
T ss_dssp HHHHHHHHHHHT-TTSTT-------------------------------CHHHHHH------------HHHHHHHS----
T ss_pred HHHHHHHHHHHC-CCCcc-------------------------------cHHHHHH------------HHHHHhcC----
Confidence 223566665431 00000 0001110 00011000
Q ss_pred hccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH--HHHHHH
Q 003047 287 LEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL--ALFLKS 364 (854)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~--a~~lla 364 (854)
. . .+ .+..+|++++|...+++++. . |.+.. .+....
T Consensus 135 -----~----~------------------~~------------~~~~~~~~~~a~~~y~~al~-~--P~~~~~~~~~~~~ 172 (530)
T 2ooe_A 135 -----E----A------------------VG------------SYAENQRITAVRRVYQRGCV-N--PMINIEQLWRDYN 172 (530)
T ss_dssp -----C----C------------------CS------------STTHHHHHHHHHHHHHHHTT-S--CCTTHHHHHHHHH
T ss_pred -----C----C------------------cc------------cHHHHhHHHHHHHHHHHHHh-c--hhhhHHHHHHHHH
Confidence 0 0 00 00125788899999999999 5 65432 221111
Q ss_pred HHH-------------HHhcCHHHHHHHHHH------hhhc----cCCCc------cHHHHHHHHHHHHH----cCCH--
Q 003047 365 QLE-------------YARRNHRKAIKLLLA------LSNR----TEMGI------SSMFNNNLGCIYYQ----LAKY-- 409 (854)
Q Consensus 365 ~ly-------------~~~g~~~kAl~~l~k------al~~----~dp~~------~a~~~nnLG~iy~~----~g~~-- 409 (854)
.+. ...++|.+|...|.. .+.. ..|.. ....|......... .++.
T Consensus 173 ~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 173 KYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchh
Confidence 211 235678899888876 3331 12321 02344333222222 1232
Q ss_pred --HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH-------CCCcH-------HHHHHHHHHHH-h
Q 003047 410 --HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA-------CGKPV-------LAARCFQKSSL-V 472 (854)
Q Consensus 410 --~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~-------~Gk~e-------eAl~~y~kAL~-l 472 (854)
..++..|+++|.. .|..+.+|+++|..+.. .|+++ +|+.+|++++. +
T Consensus 253 ~~~~a~~~y~~al~~----------------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLV----------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 4888999999998 34568999999999987 79987 99999999997 8
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
.|+++.+|..+|.++. +.+ .
T Consensus 317 ~p~~~~l~~~~~~~~~---~~g---------------------------------------------------------~ 336 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEE---SRM---------------------------------------------------------K 336 (530)
T ss_dssp CSSCHHHHHHHHHHHH---HTT---------------------------------------------------------C
T ss_pred CcccHHHHHHHHHHHH---hcC---------------------------------------------------------C
Confidence 9999999999998776 210 2
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|+.+|++|+.+.|....
T Consensus 337 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 356 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPT------------------------------------------------------------ 356 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCccccCch------------------------------------------------------------
Confidence 47799999999998665321
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPD-CSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~-~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.++..++.++...|++.+|+.++++++..|+ ....+...+.+. +...|+++
T Consensus 357 ------------------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~----~~~~~~~~ 408 (530)
T 2ooe_A 357 ------------------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME----YYCSKDKS 408 (530)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH----HHHTCCHH
T ss_pred ------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH----HHHcCChh
Confidence 1245567778889999999999999998655 344443322211 12589999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.+|++++. . .|. .+.++.+++.++...
T Consensus 409 ~A~~~~e~al~--~--------------------------------------~p~----------~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 409 VAFKIFELGLK--K--------------------------------------YGD----------IPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHH--H--------------------------------------HTT----------CHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH--H--------------------------------------CCC----------CHHHHHHHHHHHHhC
Confidence 99999999993 1 032 467889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 792 GEFERAHHFVTQALSILPRSTE----ATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~----a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
|++++|..+|++++...|.++. ++...+-.+...|+.+.+..+.++ .+..|.++.|
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~ 499 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 499 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccC
Confidence 9999999999999998776543 565667778899999999999988 6777765544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=177.70 Aligned_cols=217 Identities=10% Similarity=0.021 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.+..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ ..+++++.+. ++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~~~~~~----~~ 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-----IPYINFANLLSSVNELERAL---AFYDKALELD----SS 89 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----TT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHHcC----Cc
Confidence 567899999999999999999999999999543322 36788899999999999998 4667776543 10
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
.
T Consensus 90 ~------------------------------------------------------------------------------- 90 (243)
T 2q7f_A 90 A------------------------------------------------------------------------------- 90 (243)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
.......+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++
T Consensus 91 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ----------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0123345778889999999999999999999 9999999999999999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
. ..|. ...++..+|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.
T Consensus 153 ~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 153 E-LNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQ----------------DPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp H-HCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred H-hCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHccCHHHHHH
Confidence 9 6774 5788999999999999999999999999998 23457889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|++++.++|+++.+|..++.+..
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHccCcchHHHHHHHHHHHh
Confidence 999999999999999999886544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-18 Score=175.70 Aligned_cols=215 Identities=8% Similarity=-0.070 Sum_probs=184.3
Q ss_pred chhh-HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 142 EFDV-SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 142 ~~~~-~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
+|++ +..++++|.+|+..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ ..+++++.+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~a~~~~-- 101 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-----DAHAALAVVFQTEMEPKLAD---EEYRKALASD-- 101 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHHHC--
Confidence 5665 88999999999999999999999999999543322 36788899999999999998 4667776543
Q ss_pred cCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCC
Q 003047 221 NQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGL 300 (854)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (854)
++.
T Consensus 102 --~~~--------------------------------------------------------------------------- 104 (252)
T 2ho1_A 102 --SRN--------------------------------------------------------------------------- 104 (252)
T ss_dssp --TTC---------------------------------------------------------------------------
T ss_pred --cCc---------------------------------------------------------------------------
Confidence 100
Q ss_pred ccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 003047 301 SSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN--IARGKDSSLALFLKSQLEYARRNHRKAIK 378 (854)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~--~~~~P~~~~a~~lla~ly~~~g~~~kAl~ 378 (854)
.......+.+|...|++++|++.+++++. .. |.+..+++.+|.++...|++++|++
T Consensus 105 --------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 105 --------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC--TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 01223357788889999999999999999 77 9999999999999999999999999
Q ss_pred HHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 379 LLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 379 ~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
+|++++. ..|. ...++..+|.+|..+|++++|+.+|++++.. .+.....+..++.++...|+
T Consensus 163 ~~~~~~~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 163 YFEKSLR-LNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG----------------GGQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp HHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHccC
Confidence 9999999 6784 5788999999999999999999999999987 24456788999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 459 PVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+++|..+|++++.++|+++.++..+
T Consensus 225 ~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 225 RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999987654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-19 Score=173.37 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=74.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
.|++++|+..+++++... |+++.++..+|.++...+++++|++.+.+++. .+|. ...++..+|.+|..+|++++|+
T Consensus 52 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~~~~-~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLD--TTSAEAYYILGSANFMIDEKQAAIDALQRAIA-LNTV-YADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-chHHHHHHHHHHHHhCCchhHH
Confidence 333333333344444444 55566666666666666666666666666666 4553 4556666666666666666666
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|++++++ .|....+|+++|.+|..+|++++|+.+|+++++++|+++
T Consensus 128 ~~~~~~l~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 128 EAYEKTISI----------------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHh----------------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 666666665 233456666666666666666666666666666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-18 Score=187.28 Aligned_cols=246 Identities=12% Similarity=0.025 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cC---CCcc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TE---MGIS 392 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~d---p~~~ 392 (854)
...++++.++...|++++|++.+++++.+... |....+++.+|.+|...|++++|++++++++.. .. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 46677999999999999999999999998310 335678999999999999999999999999983 11 1124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+++++|.+|..+|++++|+.+|++|+.+.+.... .+....+++++|.+|..+|++++|+.+|++++.+
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999998554321 1123568999999999999999999999999994
Q ss_pred -----c-CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCC
Q 003047 473 -----F-YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSD 546 (854)
Q Consensus 473 -----~-P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~ 546 (854)
+ |..+.++.++|.++. ..+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~---~~g---------------------------------------------------- 278 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHY---KLG---------------------------------------------------- 278 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH---HTT----------------------------------------------------
T ss_pred HHhhccchhHHHHHHHHHHHHH---HCC----------------------------------------------------
Confidence 5 778889999999988 221
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccc
Q 003047 547 GQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKD 626 (854)
Q Consensus 547 ~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 626 (854)
.++.|..+|++|+.+.+.....
T Consensus 279 -----~~~~A~~~~~~al~~~~~~~~~----------------------------------------------------- 300 (383)
T 3ulq_A 279 -----KIDKAHEYHSKGMAYSQKAGDV----------------------------------------------------- 300 (383)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCH-----------------------------------------------------
T ss_pred -----CHHHHHHHHHHHHHHHHHcCCH-----------------------------------------------------
Confidence 2477999999999987762210
Q ss_pred ccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 003047 627 QKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN---PVKALAAARSLLELPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 627 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~---~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeA 703 (854)
... ..+..++.++...|+ +.+|+..+++.-..+.....+..+|.+
T Consensus 301 -------~~~--------------------~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~----- 348 (383)
T 3ulq_A 301 -------IYL--------------------SEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY----- 348 (383)
T ss_dssp -------HHH--------------------HHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred -------HHH--------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-----
Confidence 000 114567889999999 788888887774344445566666654
Q ss_pred HHhcCCHHHHHHHHHhhhc
Q 003047 704 LCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~ 722 (854)
+..+|++++|+.++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5578999999999999984
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=173.31 Aligned_cols=237 Identities=17% Similarity=0.077 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccC
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
|+++.+++.+|.+++..|++++|+++|++++. | ..+.+++++|.+|.. .+++++|+.+|++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD---L-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------
Confidence 88999999999999999999999999999998 3 246789999999999 99999999999999997
Q ss_pred CccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDG 505 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~ 505 (854)
....+++++|.+|.. .+++++|+.+|++++.. +++.+|++||.++. ...
T Consensus 72 -----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~---~~~----------- 124 (273)
T 1ouv_A 72 -----------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYH---DGK----------- 124 (273)
T ss_dssp -----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH---HCS-----------
T ss_pred -----------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHH---cCC-----------
Confidence 146899999999999 99999999999999988 58999999999887 210
Q ss_pred cccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcc
Q 003047 506 SEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSV 585 (854)
Q Consensus 506 ~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~ 585 (854)
+ . ...++.|..+|++|+.+.+ .
T Consensus 125 ----------~---------------~-----------------~~~~~~A~~~~~~a~~~~~--~-------------- 146 (273)
T 1ouv_A 125 ----------V---------------V-----------------TRDFKKAVEYFTKACDLND--G-------------- 146 (273)
T ss_dssp ----------S---------------S-----------------CCCHHHHHHHHHHHHHTTC--H--------------
T ss_pred ----------C---------------c-----------------ccCHHHHHHHHHHHHhcCc--H--------------
Confidence 0 0 0135889999999997541 1
Q ss_pred cccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH
Q 003047 586 EESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV 665 (854)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v 665 (854)
.++..+|.+
T Consensus 147 -----------------------------------------------------------------------~a~~~lg~~ 155 (273)
T 1ouv_A 147 -----------------------------------------------------------------------DGCTILGSL 155 (273)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 124567888
Q ss_pred HHH----cCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 666 ELE----MENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCL----LNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 666 ~l~----lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~----lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
+.. .+++.+|+.++++++... .+.++..+|.+|. . .+++++|+.+|++++. .+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-----~g~~~~~~~~~A~~~~~~a~~--~~----------- 216 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYH-----HGEGATKNFKEALARYSKACE--LE----------- 216 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-----HTCSSCCCHHHHHHHHHHHHH--TT-----------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHh--CC-----------
Confidence 888 999999999999999863 5678888887665 6 7999999999999993 11
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
.+.++++||.+|.. .+++++|.+++++|+++.|+.+.
T Consensus 217 ---------------------------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 217 ---------------------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ---------------------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 25678999999999 99999999999999999887654
Q ss_pred HH
Q 003047 814 AT 815 (854)
Q Consensus 814 a~ 815 (854)
..
T Consensus 258 ~~ 259 (273)
T 1ouv_A 258 DI 259 (273)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-18 Score=174.97 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~l 835 (854)
.+.+++++|.++..+|++++|..++++++.+.|++.... +.++..+|++++|+..+
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 367788888888888888888888888888888664332 45566788888888776
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-17 Score=178.80 Aligned_cols=311 Identities=11% Similarity=0.036 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHH--HHHHHHHHH--HhCCCChh--------HHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDPKIL--HNIAIAEYF--RDGCTDPK--------KLLEALNN 89 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~~~l--~nla~~~~~--~~~~~~~~--------~~~~~l~~ 89 (854)
++...++-+...++.++++++|..+++++.+. -+.|..++ +.+....+. .+.+.... .+.+.+..
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 56788899999999999999999999999874 22455544 444332221 11111111 00011121
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHH
Q 003047 90 VKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVL 169 (854)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~ 169 (854)
+..... ..+..-....++.+|.+++..|+|++|+++|
T Consensus 90 i~~~~~-------------------------------------------~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~ 126 (383)
T 3ulq_A 90 IDKKQA-------------------------------------------RLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126 (383)
T ss_dssp HHHHTH-------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCC-------------------------------------------CchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 111100 0011223445667899999999999999999
Q ss_pred HHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcc
Q 003047 170 EPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSST 248 (854)
Q Consensus 170 e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (854)
+++++..+.+.+.. ...+++.++.+|...|++++|+ .++++++.+.......
T Consensus 127 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~---~~~~~al~~~~~~~~~------------------------ 179 (383)
T 3ulq_A 127 KKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM---DYARQAYEIYKEHEAY------------------------ 179 (383)
T ss_dssp HHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHTCSTT------------------------
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHhCccc------------------------
Confidence 99999877666553 4567888999999999999998 6889988775221000
Q ss_pred cccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH
Q 003047 249 ADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV 328 (854)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~ 328 (854)
. . .........+
T Consensus 180 -------~-----------------------~--------------------------------------~~~~~~~~lg 191 (383)
T 3ulq_A 180 -------N-----------------------I--------------------------------------RLLQCHSLFA 191 (383)
T ss_dssp -------H-----------------------H--------------------------------------HHHHHHHHHH
T ss_pred -------h-----------------------H--------------------------------------HHHHHHHHHH
Confidence 0 0 0011223346
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cC-CCccHHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TE-MGISSMFNN 397 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~d-p~~~a~~~n 397 (854)
.+|...|++++|++.+++++.+. |+.. .+++.+|.+|...|++++|+++|++++.. .+ | ..+.+++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 268 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMA--EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-SLPQAYF 268 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-GHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-hHHHHHH
Confidence 67778899999999999999997 5432 58899999999999999999999999983 24 5 4588899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcC
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFY 474 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P 474 (854)
++|.+|..+|++++|+.+|++++.+.+... .+.....+.++|.++...|+ +++|+..+++. ...|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAG-----------DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 999999999999999999999999854332 11122336789999999999 88888888886 4555
Q ss_pred CCHHHHHHHHHHHH
Q 003047 475 KQPLLWLRLAECCL 488 (854)
Q Consensus 475 ~~~~aw~~La~~~i 488 (854)
....++..||.++.
T Consensus 337 ~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 337 DLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56678888898877
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=196.80 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=193.2
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH-RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~-~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
.+.+++++..++...... |+++.+++.+|.++...|+| ++|+++|+++++ .+|. .+.+|+++|.+|..+|++++|
T Consensus 81 ~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-LEPE-LVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 345778888899989999 99999999999999999999 999999999999 7884 688999999999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC---------GKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---------Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+.+|++++.+ .+ ...+++++|.+|... |++++|+.+|+++++++|+++.+|++|
T Consensus 157 ~~~~~~al~~----------------~p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 157 HTCFSGALTH----------------CK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTT----------------CC-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhh----------------CC-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999998 22 368999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 003047 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563 (854)
Q Consensus 484 a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nA 563 (854)
|.++....-.. | . ....++.|+.+|++|
T Consensus 220 g~~~~~~~~~~-------------------~-----------------~----------------~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 220 GNAYLSLYFNT-------------------G-----------------Q----------------NPKISQQALSAYAQA 247 (474)
T ss_dssp HHHHHHHHHHT-------------------T-----------------C----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------------c-----------------c----------------ccchHHHHHHHHHHH
Confidence 99998531110 0 0 001368899999999
Q ss_pred HhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccch
Q 003047 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYY 643 (854)
Q Consensus 564 L~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~ 643 (854)
+.+.|.....
T Consensus 248 l~~~p~~~~~---------------------------------------------------------------------- 257 (474)
T 4abn_A 248 EKVDRKASSN---------------------------------------------------------------------- 257 (474)
T ss_dssp HHHCGGGGGC----------------------------------------------------------------------
T ss_pred HHhCCCcccC----------------------------------------------------------------------
Confidence 9998841100
Q ss_pred hhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 644 EDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 644 ~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
..++.++|.++..+|++.+|+.++++++. .|+++.++..++.++. .+|++++|++.+.+.
T Consensus 258 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~-----~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 ------------PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE-----FLSRLTSLLESKGKT 318 (474)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHHHHHHHHHHTTTC
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHHHHHHHhccc
Confidence 02467889999999999999999999998 8999999988887554 689999999877553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=170.07 Aligned_cols=214 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+.++.++...|++++|+..+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++..+|
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALE-LDSS-AATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCc-chHHHHHHH
Confidence 3455567888899999999999999999999 99999999999999999999999999999999 6784 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|..+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA----------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH----------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 9999999999999999999998 234578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 003047 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCL 560 (854)
Q Consensus 481 ~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l 560 (854)
..+|.++.. .+ .++.|..+|
T Consensus 163 ~~l~~~~~~---~~---------------------------------------------------------~~~~A~~~~ 182 (243)
T 2q7f_A 163 FQFGMCLAN---EG---------------------------------------------------------MLDEALSQF 182 (243)
T ss_dssp HHHHHHHHH---HT---------------------------------------------------------CCHHHHHHH
T ss_pred HHHHHHHHH---cC---------------------------------------------------------CHHHHHHHH
Confidence 999999883 21 126699999
Q ss_pred HHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhc
Q 003047 561 LNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSL 640 (854)
Q Consensus 561 ~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i 640 (854)
++++.+.|...
T Consensus 183 ~~~~~~~~~~~--------------------------------------------------------------------- 193 (243)
T 2q7f_A 183 AAVTEQDPGHA--------------------------------------------------------------------- 193 (243)
T ss_dssp HHHHHHCTTCH---------------------------------------------------------------------
T ss_pred HHHHHhCcccH---------------------------------------------------------------------
Confidence 99999887632
Q ss_pred cchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHH
Q 003047 641 SYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIY 699 (854)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY 699 (854)
.++..+|.++..+|++.+|+.++++++. .|+.+.++..++.+.
T Consensus 194 ----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 194 ----------------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp ----------------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 1256778899999999999999999997 888888887777654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-15 Score=173.14 Aligned_cols=224 Identities=12% Similarity=0.059 Sum_probs=177.6
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hchhcccCCcccccccc
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-------LAKYH-------TSSVFLSKALS-NSASLRKDKPLKLLTFS 438 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-------~g~~~-------eAi~~f~kAL~-~~~~l~~~~~l~~~~~~ 438 (854)
++|+.+|++++. ..|. .+.+|.++|.++.+ .|+++ +|+..|++|+. .
T Consensus 255 ~~a~~~y~~al~-~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------------- 316 (530)
T 2ooe_A 255 KRVMFAYEQCLL-VLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------- 316 (530)
T ss_dssp HHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----------------
T ss_pred HHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----------------
Confidence 588999999999 7884 68899999999987 79987 99999999997 5
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.|....+|+++|..+...|++++|..+|++++.+.|+++ .+|..++.++...+
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------------------------- 370 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-------------------------- 370 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH--------------------------
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc--------------------------
Confidence 245678999999999999999999999999999999996 69999998876211
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.++.|+.+|++|+...|....
T Consensus 371 ----------------------------------~~~~A~~~~~~Al~~~~~~~~------------------------- 391 (530)
T 2ooe_A 371 ----------------------------------GIKSGRMIFKKAREDARTRHH------------------------- 391 (530)
T ss_dssp ----------------------------------HHHHHHHHHHHHHTCTTCCTH-------------------------
T ss_pred ----------------------------------CHHHHHHHHHHHHhccCCchH-------------------------
Confidence 136699999999987554211
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH-HHHcCCHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV-ELEMENPVKAL 676 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v-~l~lg~~~~Al 676 (854)
++...+.+ +...|++.+|.
T Consensus 392 ------------------------------------------------------------~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 392 ------------------------------------------------------------VYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHTCCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHcCChhHHH
Confidence 01112223 34699999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.+++++|. .|+.+..+..++.+ +..+|++++|+.+|++++. ..
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~-----~~~~g~~~~Ar~~~~~al~--~~----------------------------- 455 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDY-----LSHLNEDNNTRVLFERVLT--SG----------------------------- 455 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----HTTTTCHHHHHHHHHHHHH--SC-----------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-----HHhCCCHhhHHHHHHHHHh--cc-----------------------------
Confidence 99999997 78888888777764 4478999999999999994 10
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
| .+|+. ...+|..........|+++.+.++++++++..|+.
T Consensus 456 ---------~-----~~~~~-~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 456 ---------S-----LPPEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp ---------C-----SCGGG-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred ---------C-----CCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 1 11111 35567667777777899999999999999999853
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=162.69 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+..+.+|..+|++++|++.++++++++ |+++.+++.+|.+|...|++++|++.+.+++. ..|. .+.++..+|.+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCch-hHHHHHHHHHH
Confidence 44456888889999999999999999999 99999999999999999999999999999999 6784 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...+++++|+.++.+++.. .+....+++.+|.+|..+|++++|+++|+++++++|+++.+|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL----------------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 99999999999999999998 34567899999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
+|.++.
T Consensus 147 lg~~~~ 152 (184)
T 3vtx_A 147 IGLAYE 152 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=167.89 Aligned_cols=236 Identities=17% Similarity=0.132 Sum_probs=189.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCC
Q 003047 57 KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGS 136 (854)
Q Consensus 57 ~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 136 (854)
+|+++.+++++|.+++..+ ++.+++..+.++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~------~~~~A~~~~~~a~~----------------------------------------- 34 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK------DFTQAKKYFEKACD----------------------------------------- 34 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHHH-----------------------------------------
Confidence 5789999999998877554 45567777777772
Q ss_pred cccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH----ccCHHHHHHHH
Q 003047 137 LVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA----CHDAFRSADVL 208 (854)
Q Consensus 137 ~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~----~~~~~kA~~~l 208 (854)
++++..++++|.+|.. .+++++|+++|+++++. ++. .+++.++.+|.. .+++++|+
T Consensus 35 ------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~---~a~~~lg~~~~~g~~~~~~~~~A~--- 98 (273)
T 1ouv_A 35 ------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYS---NGCHLLGNLYYSGQGVSQNTNKAL--- 98 (273)
T ss_dssp ------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHTSSSCCCHHHHH---
T ss_pred ------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCH---HHHHHHHHHHhCCCCcccCHHHHH---
Confidence 2245689999999999 99999999999999884 222 368889999999 99999998
Q ss_pred HHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Q 003047 209 IYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLE 288 (854)
Q Consensus 209 ~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (854)
.+|++++... + .
T Consensus 99 ~~~~~a~~~~-----~-------------------------------~-------------------------------- 110 (273)
T 1ouv_A 99 QYYSKACDLK-----Y-------------------------------A-------------------------------- 110 (273)
T ss_dssp HHHHHHHHTT-----C-------------------------------H--------------------------------
T ss_pred HHHHHHHHcC-----C-------------------------------c--------------------------------
Confidence 5678776442 0 0
Q ss_pred cccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003047 289 ISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL----TRNLKHAKREVKLAMNIARGKDSSLALFLKS 364 (854)
Q Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~----~~~~~~A~~elk~al~~~~~P~~~~a~~lla 364 (854)
...+..+.+|.. .+++++|++.++++++.. ++.+++.+|
T Consensus 111 ---------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 153 (273)
T 1ouv_A 111 ---------------------------------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILG 153 (273)
T ss_dssp ---------------------------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHH
Confidence 011223455566 789999999999999876 678999999
Q ss_pred HHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 365 QLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 365 ~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.+|.. .+++++|+++|++++. .. .+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------------- 215 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-------------- 215 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------------
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--------------
Confidence 99999 9999999999999998 33 35788899999999 99999999999999997
Q ss_pred ccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
. ...+++++|.+|.. .+++++|+.+|++++++.|+++..++.
T Consensus 216 --~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 216 --E--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp --T--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred --C--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 26789999999999 999999999999999999986555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=160.45 Aligned_cols=215 Identities=13% Similarity=-0.025 Sum_probs=183.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|+++..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ .++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~---~~~~~a~~~~--- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE-----LAWLVRAEIYQYLKVNDKAQ---ESFRQALSIK--- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch-----HHHHHHHHHHHHcCChHHHH---HHHHHHHHhC---
Confidence 567888999999999999999999999999999654432 25778899999999999998 5677776553
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++.
T Consensus 73 -~~~---------------------------------------------------------------------------- 75 (225)
T 2vq2_A 73 -PDS---------------------------------------------------------------------------- 75 (225)
T ss_dssp -TTC----------------------------------------------------------------------------
T ss_pred -CCC----------------------------------------------------------------------------
Confidence 100
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-RNLKHAKREVKLAMN--IARGKDSSLALFLKSQLEYARRNHRKAIK 378 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-~~~~~A~~elk~al~--~~~~P~~~~a~~lla~ly~~~g~~~kAl~ 378 (854)
.......+.+|... |++++|++.+++++. .. |++..+++.+|.++...|++++|++
T Consensus 76 -------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 76 -------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY--PTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC--SCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 00223357788899 999999999999999 66 7889999999999999999999999
Q ss_pred HHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC-ccHHHHHHHHHHHHHCC
Q 003047 379 LLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITYNCGLQYLACG 457 (854)
Q Consensus 379 ~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~nLG~~ll~~G 457 (854)
+|++++. ..|. ...++..+|.+|..+|++++|+.+|++++.. .+ .....+..++.++...|
T Consensus 135 ~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 135 YLKRSLA-AQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSR----------------VEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHH-HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-hCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHHhcC
Confidence 9999999 6784 5788999999999999999999999999998 23 45677888899999999
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 458 KPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 458 k~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
++++|..+++.++..+|+++.++..+
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999987665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=187.60 Aligned_cols=352 Identities=11% Similarity=-0.011 Sum_probs=241.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhhhcccccCCCCC
Q 003047 150 LNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA---FRSADVLIYLEKAFSVGCVNQVDSG 226 (854)
Q Consensus 150 ~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~---~kA~~~l~~lek~l~~~~~~~~~~~ 226 (854)
..+|.+++..|++++|+++|+++... . ..+ +++.|+.+|...|++ ++|+ .+|+++.... +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g-~~~-----A~~~Lg~~y~~~g~~~d~~~A~---~~~~~A~~~~----~--- 69 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G-YSE-----AQVGLADIQVGTRDPAQIKQAE---ATYRAAADTS----P--- 69 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-CCT-----GGGTCC-------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C-CHH-----HHHHHHHHHHccCCCCCHHHHH---HHHHHHHhCC----H---
Confidence 46899999999999999999999874 2 122 367788999999999 7886 5677765321 0
Q ss_pred CcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhh
Q 003047 227 SMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELS 306 (854)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (854)
.+.++||
T Consensus 70 -------------------------------------------------------------------------~A~~~Lg 76 (452)
T 3e4b_A 70 -------------------------------------------------------------------------RAQARLG 76 (452)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1233455
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHH---HHHHHh
Q 003047 307 RTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAI---KLLLAL 383 (854)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl---~~l~ka 383 (854)
.+++..+.. ..++.++|++.++++++.+ ++.+++.+|.+|...+...++. +.+.++
T Consensus 77 ~~~~~~~~~-----------------~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 77 RLLAAKPGA-----------------TEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp HHHHTC--C-----------------CHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHhCCCC-----------------CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 544332100 0136678888888888765 4459999999999888765554 444444
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC---CcH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG---KPV 460 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G---k~e 460 (854)
.. + ..+.++++||.+|...+.+++++....+...... ..++.+++++|.+|...| +++
T Consensus 136 ~~---~-g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~---------------~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 136 QA---A-GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL---------------NTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HH---H-TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT---------------TTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred HH---C-CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHcCCcccHH
Confidence 43 2 1245788899999999976666655333333210 012348999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCC
Q 003047 461 LAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540 (854)
Q Consensus 461 eAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~ 540 (854)
+|+.+|++++...|..+..|++||.++. ... | .
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~---~g~-------------------~-----------------~-------- 229 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLG---DAT-------------------L-----------------G-------- 229 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHT---CGG-------------------G-----------------S--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC-------------------C-----------------C--------
Confidence 9999999999999999999999998875 210 0 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccccc
Q 003047 541 SSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTA 620 (854)
Q Consensus 541 ~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (854)
....+.|..+|+.|. |.++.
T Consensus 230 ---------~~d~~~A~~~~~~aa---~g~~~------------------------------------------------ 249 (452)
T 3e4b_A 230 ---------TPDEKTAQALLEKIA---PGYPA------------------------------------------------ 249 (452)
T ss_dssp ---------SCCHHHHHHHHHHHG---GGSTH------------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHc---CCCHH------------------------------------------------
Confidence 013578999999987 54331
Q ss_pred CCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHcCCCChHHHHHHHH
Q 003047 621 NGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV-E--LEMENPVKALAAARSLLELPDCSRIYIFLGH 697 (854)
Q Consensus 621 ~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v-~--l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~ 697 (854)
++.+||.+ + ...+|+.+|+.+++++.... ++.++..||.
T Consensus 250 -------------------------------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~ 291 (452)
T 3e4b_A 250 -------------------------------------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGK 291 (452)
T ss_dssp -------------------------------------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 24566776 3 57899999999999999654 7889999999
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 003047 698 IYAAEALCLLN-----RPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPK 772 (854)
Q Consensus 698 lY~aeAl~~lg-----r~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~ 772 (854)
+|. .| ++++|+.+|+++. ..
T Consensus 292 ~y~------~G~g~~~d~~~A~~~~~~Aa--~g----------------------------------------------- 316 (452)
T 3e4b_A 292 LYY------EGKWVPADAKAAEAHFEKAV--GR----------------------------------------------- 316 (452)
T ss_dssp HHH------HCSSSCCCHHHHHHHHHTTT--TT-----------------------------------------------
T ss_pred HHH------cCCCCCCCHHHHHHHHHHHh--CC-----------------------------------------------
Confidence 886 36 9999999999887 11
Q ss_pred chhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 003047 773 PEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPRSTEATLTAIYVDLM----LGKSQEALAKLKY 837 (854)
Q Consensus 773 ~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~----~G~~~eA~~~lk~ 837 (854)
.+.++++||.+|.. ..|+++|.++|+++.+. +++.+...++.++.. ..++.+|+..+++
T Consensus 317 ----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 317 ----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp ----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 36778999999987 45999999999999874 567777778877753 4599999999987
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-16 Score=161.58 Aligned_cols=148 Identities=20% Similarity=0.114 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++.++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALA-SDSR-NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-cHHHHHHHH
Confidence 3466778999999999999999999999999 99999999999999999999999999999999 6784 578999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALS--NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~--~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+|..+|++++|+.+|++++. . .+....+++++|.++...|++++|+.+|++++.+.|+++.
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTL----------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTT----------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCcc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999999998 3 2345788999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003047 479 LWLRLAECCL 488 (854)
Q Consensus 479 aw~~La~~~i 488 (854)
+|..+|.++.
T Consensus 177 ~~~~la~~~~ 186 (252)
T 2ho1_A 177 VALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-17 Score=166.22 Aligned_cols=208 Identities=12% Similarity=-0.037 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
++..++++|.+++..|+|++|+++|+++++..++.+. .+++.++.+|...|++++|+ .++++++.+. ++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~----p~ 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAA---DYFDIAIKKN----YN 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHTT----CS
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHH---HHHHHHHHhC----cc
Confidence 4468999999999999999999999999996542232 24666888888888888887 5677776543 10
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
.
T Consensus 75 -------------------------------~------------------------------------------------ 75 (228)
T 4i17_A 75 -------------------------------L------------------------------------------------ 75 (228)
T ss_dssp -------------------------------H------------------------------------------------
T ss_pred -------------------------------h------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHhcCHHHHH
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-------LALFLKSQLEYARRNHRKAI 377 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-------~a~~lla~ly~~~g~~~kAl 377 (854)
....+..+.+|..+|++++|++.+++++.+. |+++ .+++.+|.++...|++++|+
T Consensus 76 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 76 ----------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence 0123345677777888888888888888888 8887 55788888888888888888
Q ss_pred HHHHHhhhccCCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 378 KLLLALSNRTEMGISS----MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 378 ~~l~kal~~~dp~~~a----~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
++|++++.. .+. .+++++|.+|..+|+ .+++++..+. +.....+ .+...
T Consensus 138 ~~~~~al~~----~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~----------------~~~~~~~--~~~~~ 190 (228)
T 4i17_A 138 ENYKHATDV----TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA----------------SSNKEKY--ASEKA 190 (228)
T ss_dssp HHHHHHTTS----SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT----------------TTCHHHH--HHHHH
T ss_pred HHHHHHHhc----CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc----------------cCCHHHH--HHHHH
Confidence 888888772 355 467777888865443 4455655541 1111121 24445
Q ss_pred HHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 454 LACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 454 l~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
...+.+++|+.+|+++++++|+++.++..|+.+.
T Consensus 191 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 191 KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5566689999999999999999999999888753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-16 Score=154.90 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCC-ChHHHHHHHH
Confidence 355677899999999999999999999999 99999999999999999999999999999999 6784 5788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 402 IYYQL-AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 402 iy~~~-g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+|... |++++|+.+|++++.. +. .+....+++++|.++...|++++|+.+|++++...|+++.+|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 150 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PT-------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TT-------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999 9999999999999982 10 234568899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..+|.++.
T Consensus 151 ~~la~~~~ 158 (225)
T 2vq2_A 151 KELARTKM 158 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=160.59 Aligned_cols=154 Identities=8% Similarity=0.011 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
..+.++.+|+..|++++|++.+++++.+. | .+..+++.+|.+++..|++++|+++|++++. .+|. .+.++.++|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KNYN-LANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hCcc-hHHHHHHHHH
Confidence 45567999999999999999999999999 9 9999999999999999999999999999999 7884 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLL 479 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~a 479 (854)
+|..+|++++|+.+|++++...+.... + ......+++++|.++...|++++|+.+|+++++++|+ ++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~---~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNAT---I------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHH---H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHH---H------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999998321000 0 0001267999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHH
Q 003047 480 WLRLAECCLM 489 (854)
Q Consensus 480 w~~La~~~i~ 489 (854)
|+++|.++..
T Consensus 156 ~~~l~~~~~~ 165 (228)
T 4i17_A 156 LYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999984
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-16 Score=172.23 Aligned_cols=247 Identities=13% Similarity=0.020 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC---
Q 003047 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG--- 390 (854)
Q Consensus 320 ~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~--- 390 (854)
.....++++..+...|++++|+..+++++.+... |....+++.+|.+|...|++++|++++++++.. ..+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 3446788999999999999999999999988511 234678899999999999999999999999973 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+.+++++|.+|..+|++++|+.+|++|+.+.+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 24678899999999999999999999999998543321 01235789999999999999999999999999
Q ss_pred H-----hcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCC
Q 003047 471 L-----VFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGS 545 (854)
Q Consensus 471 ~-----l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~ 545 (854)
. .+|..+.++..+|.++. +.+
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~---~~g--------------------------------------------------- 275 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLC---KAG--------------------------------------------------- 275 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHH---HTT---------------------------------------------------
T ss_pred HHHHhhCChhHHHHHHHHHHHHH---HCC---------------------------------------------------
Confidence 9 77888899999999988 321
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcc
Q 003047 546 DGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAK 625 (854)
Q Consensus 546 ~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~ 625 (854)
.++.|..+|++|+.+.+......
T Consensus 276 ------~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------------- 298 (378)
T 3q15_A 276 ------QTQKAFQFIEEGLDHITARSHKF--------------------------------------------------- 298 (378)
T ss_dssp ------CHHHHHHHHHHHHHHCCTTCCSC---------------------------------------------------
T ss_pred ------CHHHHHHHHHHHHHHHHHcCCHH---------------------------------------------------
Confidence 24779999999999988743100
Q ss_pred cccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 003047 626 DQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN---PVKALAAARSLLELPDCSRIYIFLGHIYAAE 702 (854)
Q Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~---~~~Al~~~~~lL~~p~~~~~~~~la~lY~ae 702 (854)
.. ..+..++.++...|+ +.+|+.++++.-..+.....+..+|.
T Consensus 299 ---------~~--------------------~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~----- 344 (378)
T 3q15_A 299 ---------YK--------------------ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA----- 344 (378)
T ss_dssp ---------HH--------------------HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred ---------HH--------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----
Confidence 00 113455667888888 88888888874334444455555555
Q ss_pred HHHhcCCHHHHHHHHHhhh
Q 003047 703 ALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l 721 (854)
.+...|++++|+.++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4557899999999999998
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=166.23 Aligned_cols=314 Identities=9% Similarity=-0.009 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHH--HHHHHHHH--HHhCCCChh------HHHHHHHHH
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDPKIL--HNIAIAEY--FRDGCTDPK------KLLEALNNV 90 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~~~l--~nla~~~~--~~~~~~~~~------~~~~~l~~~ 90 (854)
.+++..++-+-..++..+++++|..+++++... -..|.+++ +.+....+ ..+.+.... .+.+.+..+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 467788899999999999999999999998763 22366665 44332222 123332222 111222222
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003047 91 KNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170 (854)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e 170 (854)
..... ..++.-...+++.+|..++..|+|++|+++|+
T Consensus 89 ~~~~~-------------------------------------------~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~ 125 (378)
T 3q15_A 89 ETPQK-------------------------------------------KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125 (378)
T ss_dssp HGGGH-------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCC-------------------------------------------CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 21110 11122344567788999999999999999999
Q ss_pred HhhhccCCCchh-hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCccc
Q 003047 171 PLYQNIEPIDET-TALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTA 249 (854)
Q Consensus 171 ~l~~~~~~~~e~-~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (854)
++++..+.+.+. ....+++.++.+|...|++++|+ .++++++.+.......
T Consensus 126 ~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~---~~~~~al~~~~~~~~~------------------------- 177 (378)
T 3q15_A 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM---YHILQALDIYQNHPLY------------------------- 177 (378)
T ss_dssp HHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHTSTTC-------------------------
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHhCCCc-------------------------
Confidence 999987766554 34457888999999999999998 6889888775211000
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHH
Q 003047 250 DASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVR 329 (854)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~ 329 (854)
. . .........+.
T Consensus 178 ------~-----------------------~--------------------------------------~~~~~~~~lg~ 190 (378)
T 3q15_A 178 ------S-----------------------I--------------------------------------RTIQSLFVIAG 190 (378)
T ss_dssp ------H-----------------------H--------------------------------------HHHHHHHHHHH
T ss_pred ------h-----------------------h--------------------------------------hHHHHHHHHHH
Confidence 0 0 00112223466
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKD----SSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGC 401 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~----~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~ 401 (854)
+|...|++++|++.+++++.+.+..+ ...+++.+|.+|...|++++|+++|++++.. .+|. .+.+++++|.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 77788999999999999999861112 2457889999999999999999999999972 3564 4889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcCCCHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|..+|++++|+.+|++++.+.+... .+.....+..++..+...++ +.+|+.+|++ ....|....
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~ 337 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARS-----------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEA 337 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTC-----------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHH
Confidence 99999999999999999999854332 11223345677888888887 7777777776 334445556
Q ss_pred HHHHHHHHHH
Q 003047 479 LWLRLAECCL 488 (854)
Q Consensus 479 aw~~La~~~i 488 (854)
++..||.++.
T Consensus 338 ~~~~la~~y~ 347 (378)
T 3q15_A 338 CARSAAAVFE 347 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777777766
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=195.48 Aligned_cols=114 Identities=11% Similarity=-0.096 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
+.++++++++ |++..+++.+|.++..+|++++|+++|+++++ .+|+ .+.++++||.+|..+|++++|+.+|++||+
T Consensus 64 ~~~~~Al~l~--P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 64 MHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INPA-FADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445 66666666667777777777777777777666 5663 466666677777777777777777777776
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+ .+....+++++|.+|..+|++++|.++|++++++.|+
T Consensus 140 l----------------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 140 L----------------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp H----------------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred h----------------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 6 2344566667777777777777777777776666544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-14 Score=179.51 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
++...++.++..|++++|+..+.+ .+++++++.+|..+...|+|++|+++|..+.+ ..+. +.+...+|.+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiK-------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~~e--~~Idt~Lafa 1176 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARE--SYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh-------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hccc--ccccHHHHHH
Confidence 334468888999999999999954 46889999999999999999999999999998 4442 2344569999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|.+++++++ ++.|. .. .....++++|..++..|+|++|..+|.++ ..|.+
T Consensus 1177 YAKl~rlee-le~fI---~~------------------~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~r 1226 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI---NG------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 1226 (1630)
T ss_pred HHhhcCHHH-HHHHH---hC------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHH
Confidence 999999885 55552 21 23456779999999999999999999996 48999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
+|.|++ +.+ .++.|+.|+++
T Consensus 1227 LA~tLv---kLg---------------------------------------------------------e~q~AIEaarK 1246 (1630)
T 1xi4_A 1227 LASTLV---HLG---------------------------------------------------------EYQAAVDGARK 1246 (1630)
T ss_pred HHHHHH---HhC---------------------------------------------------------CHHHHHHHHHH
Confidence 999998 210 24679999998
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
| ....
T Consensus 1247 A-----~n~~---------------------------------------------------------------------- 1251 (1630)
T 1xi4_A 1247 A-----NSTR---------------------------------------------------------------------- 1251 (1630)
T ss_pred h-----CCHH----------------------------------------------------------------------
Confidence 8 1111
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
+|...++++...|+|..|..+.-.+...| +.+..+++.|. ..|+++||+.+++.++
T Consensus 1252 ---------------aWkev~~acve~~Ef~LA~~cgl~Iiv~~---deLeeli~yYe-----~~G~feEAI~LlE~aL- 1307 (1630)
T 1xi4_A 1252 ---------------TWKEVCFACVDGKEFRLAQMCGLHIVVHA---DELEELINYYQ-----DRGYFEELITMLEAAL- 1307 (1630)
T ss_pred ---------------HHHHHHHHHhhhhHHHHHHHHHHhhhcCH---HHHHHHHHHHH-----HcCCHHHHHHHHHHHh-
Confidence 13345778889999999999988644454 45557777665 5899999999999998
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc--CCHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ--GEFERAHHF 800 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~--g~~e~A~~~ 800 (854)
.++ | ++..++..||.+++.- +++-++.+.
T Consensus 1308 -~Le--------------------------------------r----------aH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1308 -GLE--------------------------------------R----------AHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred -ccC--------------------------------------h----------hHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 332 1 2678888899999887 899999999
Q ss_pred HHHHHhhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 801 VTQALSILP-----RSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 801 ~~~Al~~~P-----~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
|...+.+.| ...+.+.-+++++.+-|+++.|+..+-.|.
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 998888766 567888999999999999999997766554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=165.84 Aligned_cols=246 Identities=11% Similarity=-0.010 Sum_probs=190.6
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 003047 39 QSRKFDECLDLLKQLLDK----KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSK 114 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~----~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (854)
..|+|++|+..|+++++. +|.++.+++++|.+++..++ +.+++..+.+++..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~al~~------------------ 72 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL------RALARNDFSQALAI------------------ 72 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc------HHHHHHHHHHHHHc------------------
Confidence 458999999999999997 45678999999999886643 55577777777741
Q ss_pred ccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHH
Q 003047 115 VGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDV 194 (854)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~v 194 (854)
+|+++..++++|.+|...|+|++|+++|+++++..+...+ +++.++.+
T Consensus 73 ---------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~ 120 (275)
T 1xnf_A 73 ---------------------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-----AHLNRGIA 120 (275)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-----HHHHHHHH
T ss_pred ---------------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH-----HHHHHHHH
Confidence 3556779999999999999999999999999996544332 58889999
Q ss_pred HHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhh
Q 003047 195 ALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEE 274 (854)
Q Consensus 195 y~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (854)
|...|++++|+ .++++++.+. ++. .
T Consensus 121 ~~~~g~~~~A~---~~~~~a~~~~----~~~------------------------------~------------------ 145 (275)
T 1xnf_A 121 LYYGGRDKLAQ---DDLLAFYQDD----PND------------------------------P------------------ 145 (275)
T ss_dssp HHHTTCHHHHH---HHHHHHHHHC----TTC------------------------------H------------------
T ss_pred HHHhccHHHHH---HHHHHHHHhC----CCC------------------------------h------------------
Confidence 99999999998 5678777653 110 0
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC
Q 003047 275 TLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGK 354 (854)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P 354 (854)
. ..+ ...++...|++++|+..+++++... |
T Consensus 146 -------------------------------------------~----~~~-~~~~~~~~~~~~~A~~~~~~~~~~~--~ 175 (275)
T 1xnf_A 146 -------------------------------------------F----RSL-WLYLAEQKLDEKQAKEVLKQHFEKS--D 175 (275)
T ss_dssp -------------------------------------------H----HHH-HHHHHHHHHCHHHHHHHHHHHHHHS--C
T ss_pred -------------------------------------------H----HHH-HHHHHHHhcCHHHHHHHHHHHHhcC--C
Confidence 0 000 1123355699999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
++...+. ++.+++..+++++|++.+.+++. ..|. ..+.++.++|.+|..+|++++|+.+|++++...
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 245 (275)
T 1xnf_A 176 KEQWGWN-IVEFYLGNISEQTLMERLKADAT-DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-------- 245 (275)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------
T ss_pred cchHHHH-HHHHHHHhcCHHHHHHHHHHHhc-ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------
Confidence 8866654 78888899999999999999998 3431 125788999999999999999999999999982
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
|.. +...+.++..+|++++|+++|
T Consensus 246 --------p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --------VHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------CTT---CHHHHHHHHHHHHHHHC----
T ss_pred --------chh---HHHHHHHHHHHHHHHhhHHHH
Confidence 222 223488999999999999988
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=167.92 Aligned_cols=241 Identities=13% Similarity=0.028 Sum_probs=181.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q 003047 140 MDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFS 216 (854)
Q Consensus 140 ~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~ 216 (854)
.++|+.+..++++|.+|+..|+|++|+.+|+++++..+.. +......+++.++.+|...|++++|+ .++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~ 97 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA---NLLNDALA 97 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHH
Confidence 3478899999999999999999999999999999864432 23334457888999999999999998 56777776
Q ss_pred cccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCC
Q 003047 217 VGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTR 296 (854)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (854)
+.....+..
T Consensus 98 ~~~~~~~~~----------------------------------------------------------------------- 106 (311)
T 3nf1_A 98 IREKTLGKD----------------------------------------------------------------------- 106 (311)
T ss_dssp HHHHHHCTT-----------------------------------------------------------------------
T ss_pred HHHHHhCCC-----------------------------------------------------------------------
Confidence 531100000
Q ss_pred CCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHh
Q 003047 297 PVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA------RGKDSSLALFLKSQLEYAR 370 (854)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~------~~P~~~~a~~lla~ly~~~ 370 (854)
...........+.+|...|++++|++.+++++.+. ..|....+++.+|.++...
T Consensus 107 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 107 --------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred --------------------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 00001233445778889999999999999999882 1256677889999999999
Q ss_pred cCHHHHHHHHHHhhhc------c-CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--c-------------
Q 003047 371 RNHRKAIKLLLALSNR------T-EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--K------------- 428 (854)
Q Consensus 371 g~~~kAl~~l~kal~~------~-dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~------------- 428 (854)
|++++|+++|++++.. . .| ....+++++|.+|..+|++++|+.+|++++...++.. .
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDP-NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999999999983 1 44 4567889999999999999999999999998643210 0
Q ss_pred ------C-----Ccc-------ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 429 ------D-----KPL-------KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 429 ------~-----~~l-------~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
. ..+ .......+....+++++|.+|...|++++|+.+|++++++.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0 000 0000122445788999999999999999999999999999886
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-14 Score=159.58 Aligned_cols=298 Identities=12% Similarity=0.002 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL-----ALFLKSQLEYARRNHRKAIKLLLALSNR----TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~-----a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp 389 (854)
..-.+.+.++.+++..|++++|...+++++... |.+.. +++.+|.++...|++++|++.+++++.. .++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 444577888999999999999999999999998 75532 6788999999999999999999999873 111
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
.....+++++|.+|..+|++++|+.+|++++...+...... .+....++.++|.++...|++++|..+|+++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ--------LPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT--------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11234578899999999999999999999999854332100 0224567889999999999999999999999
Q ss_pred HHhcCCC-----HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 470 SLVFYKQ-----PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 470 L~l~P~~-----~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
+.+.|.. ..+|..+|.++.. .+
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~---~g-------------------------------------------------- 188 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLA---RG-------------------------------------------------- 188 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHH---HT--------------------------------------------------
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHH---cC--------------------------------------------------
Confidence 9998863 4567777776662 10
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
.++.|..+|++++.+.+......
T Consensus 189 -------~~~~A~~~l~~a~~~~~~~~~~~-------------------------------------------------- 211 (373)
T 1hz4_A 189 -------DLDNARSQLNRLENLLGNGKYHS-------------------------------------------------- 211 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHTTSCCCH--------------------------------------------------
T ss_pred -------CHHHHHHHHHHHHHHHhccCcch--------------------------------------------------
Confidence 24679999999998866522100
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeA 703 (854)
.. .......++.+++..|++.+|+.++++++. .+..+. .........+.+
T Consensus 212 ----------~~------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~la~~ 262 (373)
T 1hz4_A 212 ----------DW------------------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARA 262 (373)
T ss_dssp ----------HH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-GGHHHHHHHHHH
T ss_pred ----------hH------------------HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch-hhHHHHHHHHHH
Confidence 00 001112345568899999999999999987 332211 001112334556
Q ss_pred HHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 003047 704 LCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVN 783 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~N 783 (854)
+...|++++|+.++++++. .. . ..+ .+ ...+.++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~~--~~-----------~---~~~-------------------~~---------~~~~~~~~~ 298 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNE--NA-----------R---SLR-------------------LM---------SDLNRNLLL 298 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HH-----------H---HTT-------------------CH---------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--HH-----------H---hCc-------------------ch---------hhHHHHHHH
Confidence 6789999999999999983 10 0 000 00 113457889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 784 IAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 784 La~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
+|.++..+|++++|..++++++.+.+
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=180.62 Aligned_cols=209 Identities=12% Similarity=-0.020 Sum_probs=176.7
Q ss_pred hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhh
Q 003047 159 LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA-FRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLA 237 (854)
Q Consensus 159 ~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~-~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~ 237 (854)
.+++++|+..+++.....+... .+++.++.+|...|+| ++|+ .+|++++.+. ++.
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a-----~~~~~lg~~~~~~g~~~~~A~---~~~~~al~~~----p~~------------ 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEA-----QALMLKGKALNVTPDYSPEAE---VLLSKAVKLE----PEL------------ 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH-----HHHHHHHHHHTSSSSCCHHHH---HHHHHHHHHC----TTC------------
T ss_pred HHHHHHHHHHHHHHhccCchhH-----HHHHHHHHHHHhccccHHHHH---HHHHHHHhhC----CCC------------
Confidence 4567888888887776333211 3688899999999999 9998 5778887664 110
Q ss_pred ccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchh
Q 003047 238 KYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTV 317 (854)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 317 (854)
T Consensus 137 -------------------------------------------------------------------------------- 136 (474)
T 4abn_A 137 -------------------------------------------------------------------------------- 136 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccC
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~d 388 (854)
.......+.+|..+|++++|++.++++++++ |+ ..+++.+|.++... |++++|+++|++++. .+
T Consensus 137 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~ 209 (474)
T 4abn_A 137 ---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MD 209 (474)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hC
Confidence 0123345778888999999999999999999 99 79999999999999 999999999999999 78
Q ss_pred CCccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 389 MGISSMFNNNLGCIYYQL--------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~--------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
|. .+.+|+++|.+|..+ |++++|+.+|++++.+.+. .+..+.+|+++|.+|...|+++
T Consensus 210 p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 210 VL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-------------ASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-------------GGGCHHHHHHHHHHHHHTTCHH
T ss_pred CC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-------------cccCHHHHHHHHHHHHHcCCHH
Confidence 84 688999999999999 9999999999999998321 0146789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 461 LAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 461 eAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+|+.+|++++.++|+++.+|.+++.++...++
T Consensus 276 ~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=189.79 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=135.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+.+|..+|++++|++.++++++++ |++..+++.+|.+|..+|++++|+++|+++++ .+|+ .+.+|++||.+|..+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~-~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPT-FADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHc
Confidence 4666677899999999999999999 99999999999999999999999999999999 7994 688999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
|++++|+++|++|+++ .+....+++|+|.+|..+|++++|+.+|+++++++|+++.+|.+||.+
T Consensus 91 g~~~~A~~~~~kAl~l----------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQI----------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp TCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 9999999999999998 355689999999999999999999999999999999999999999999
Q ss_pred HHH
Q 003047 487 CLM 489 (854)
Q Consensus 487 ~i~ 489 (854)
+..
T Consensus 155 l~~ 157 (723)
T 4gyw_A 155 LQI 157 (723)
T ss_dssp HHH
T ss_pred HHh
Confidence 884
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=151.38 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=112.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
+..++ |+...++..+|+.++..|+|++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++++
T Consensus 5 ~a~in--P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 5 LAYIN--PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-RDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp --CCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 44577 99999999999999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+|+++|.+|..+|++++|+.+|+++++++|+++.++..|+.|+
T Consensus 77 ------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999999999874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=157.75 Aligned_cols=137 Identities=10% Similarity=0.052 Sum_probs=126.5
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
...|++++|++.+++++... |+++.+++.+|.+|+..|+|++|+++|++++. .+|. ++.+|+++|.+|..+|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCchHH
Confidence 34688899999999999999 99999999999999999999999999999999 7894 68899999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC-FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~-y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|+.+|++++++ .|.+..+++++|.+|...|++++|..+ ++++++++|+++.+|..++.++.
T Consensus 84 A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 84 AVECYRRSVEL----------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999998 355688999999999999999887766 59999999999999999888766
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-14 Score=158.28 Aligned_cols=283 Identities=14% Similarity=-0.008 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS----MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a----~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
..++.+|.+++..|++++|+.++++++. ..|.... .+++++|.+|...|++++|+.+|++++...+....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 88 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 88 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence 5667889999999999999999999998 4443322 36788999999999999999999999998543210
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY--------KQPLLWLRLAECCLMALEKGLVAPGRSLSDG 505 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P--------~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~ 505 (854)
......+++++|.++...|++++|+.+|++++.+.+ ....++..+|.++. ..+
T Consensus 89 -----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g----------- 149 (373)
T 1hz4_A 89 -----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW---AWA----------- 149 (373)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH---HTT-----------
T ss_pred -----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH---Hhc-----------
Confidence 001245678999999999999999999999999873 34556777887776 210
Q ss_pred cccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcc
Q 003047 506 SEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSV 585 (854)
Q Consensus 506 ~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~ 585 (854)
.++.|..+|++++.+.+......
T Consensus 150 ----------------------------------------------~~~~A~~~~~~al~~~~~~~~~~----------- 172 (373)
T 1hz4_A 150 ----------------------------------------------RLDEAEASARSGIEVLSSYQPQQ----------- 172 (373)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHTTTSCGGG-----------
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHHhhccCcHH-----------
Confidence 24779999999999988732100
Q ss_pred cccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH
Q 003047 586 EESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV 665 (854)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v 665 (854)
....+..+|.+
T Consensus 173 ---------------------------------------------------------------------~~~~~~~la~~ 183 (373)
T 1hz4_A 173 ---------------------------------------------------------------------QLQCLAMLIQC 183 (373)
T ss_dssp ---------------------------------------------------------------------GHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 00236678999
Q ss_pred HHHcCCHHHHHHHHHHHHc---CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHh
Q 003047 666 ELEMENPVKALAAARSLLE---LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVE 742 (854)
Q Consensus 666 ~l~lg~~~~Al~~~~~lL~---~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 742 (854)
+...|++.+|+.++++++. .+..+..+........+.++...|++++|+.++++++. ....
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~-------------- 247 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFA-------------- 247 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCT--------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCC--------------
Confidence 9999999999999999885 23333233332222344557789999999999999883 1100
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 003047 743 KIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------TEATL 816 (854)
Q Consensus 743 ~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~ 816 (854)
.+ ......+.++|.++..+|++++|...+++++...+.. ..++.
T Consensus 248 ---------------------~~---------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 248 ---------------------NN---------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp ---------------------TC---------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------cc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 00 0123457889999999999999999999998875432 34777
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 003047 817 TAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++.++...|++++|...+++
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 888888999999999998877
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=167.31 Aligned_cols=237 Identities=10% Similarity=-0.044 Sum_probs=180.2
Q ss_pred chhhHHHHHHH-HHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 142 EFDVSVAKLNI-AVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 142 ~~~~~~~~~n~-a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+++.+..+|+. |.+|..+|+|++|+++|++++...+...+.. ...++..++.+|..+|++++|+ .+|++++.+..
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~---~~~~~Al~l~~ 108 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV---DSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHH
Confidence 47778888887 6789999999999999999999766655543 4557888999999999999998 67899887751
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
.. ++ . ... .
T Consensus 109 ~~-g~-------------------------------~----------------------~~~-----------------a 117 (292)
T 1qqe_A 109 HR-GQ-------------------------------F----------------------RRG-----------------A 117 (292)
T ss_dssp HT-TC-------------------------------H----------------------HHH-----------------H
T ss_pred Hc-CC-------------------------------H----------------------HHH-----------------H
Confidence 11 00 0 000 0
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHhcC
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-RNLKHAKREVKLAMNIARGKDS------SLALFLKSQLEYARRN 372 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-~~~~~A~~elk~al~~~~~P~~------~~a~~lla~ly~~~g~ 372 (854)
.++++ .+.+|..+ |++++|++.+++++.+. |++ ..++..+|.++...|+
T Consensus 118 ~~~~~----------------------lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 118 NFKFE----------------------LGEILENDLHDYAKAIDCYELAGEWY--AQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHH----------------------HHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH----------------------HHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHHHHHHHhCC
Confidence 01222 35566675 99999999999999999 865 5678899999999999
Q ss_pred HHHHHHHHHHhhhccCCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 373 HRKAIKLLLALSNRTEMGIS------SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 373 ~~kAl~~l~kal~~~dp~~~------a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
|++|+++|++++. ..|... ..+++++|.+|..+|++++|+.+|++++.+.+.+.. ......+
T Consensus 174 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-----------~~~~~~l 241 (292)
T 1qqe_A 174 YIEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-----------SRESNFL 241 (292)
T ss_dssp HHHHHHHHHHHHH-TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------------HHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------cHHHHHH
Confidence 9999999999999 455322 226889999999999999999999999998554321 1123455
Q ss_pred HHHHHHHH--HCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 447 YNCGLQYL--ACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 447 ~nLG~~ll--~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+++.++. ..+++++|+..|++++.++|.+..+|.++-....
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 66777775 5677999999999999999999888888876553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=163.77 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCC
Q 003047 6 STQSTAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGC 77 (854)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~ 77 (854)
++..+...-+.|.++. ..+..++..|..++..|+|++|+.+|++++++ .|..+.++.++|.+++..++
T Consensus 9 ~~~~~~~~q~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 84 (311)
T 3nf1_A 9 SGRENLYFQGGGYEIP---ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK- 84 (311)
T ss_dssp GGGGGGSCSSSCTTSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccccccCCCCcch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444555666676665 45778899999999999999999999999994 66678999999999886654
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHH
Q 003047 78 TDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWF 157 (854)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~ 157 (854)
+.+++..+.+++...... ...+++..+..++++|.+|.
T Consensus 85 -----~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 85 -----YKDAANLLNDALAIREKT-------------------------------------LGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-------------------------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHH-------------------------------------hCCCChHHHHHHHHHHHHHH
Confidence 444666666665321000 00125667889999999999
Q ss_pred HhhcHHHHHHHHHHhhhccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhh
Q 003047 158 HLHEYAKALSVLEPLYQNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTN 234 (854)
Q Consensus 158 ~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~ 234 (854)
..|+|++|+++|+++++..+.. +......+++.++.+|...|++++|+ .++++++.+.....+..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---~~~~~a~~~~~~~~~~~--------- 190 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE---YYYQRALEIYQTKLGPD--------- 190 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH---HHHHHHHHHHHHTSCTT---------
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHHhCCC---------
Confidence 9999999999999999865221 11223456788999999999999998 56677766531110000
Q ss_pred hhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhccc
Q 003047 235 LLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSI 314 (854)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (854)
T Consensus 191 -------------------------------------------------------------------------------- 190 (311)
T 3nf1_A 191 -------------------------------------------------------------------------------- 190 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 315 STVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD---------------SSLALFLKSQLEYARRNHRKAIKL 379 (854)
Q Consensus 315 ~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------------~~~a~~lla~ly~~~g~~~kAl~~ 379 (854)
...........+.+|..+|++++|++.+++++.+. |+ ....+...+..+...+.+.+|+..
T Consensus 191 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 191 --DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred --CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 00011234446888999999999999999999875 43 233445566667777788888888
Q ss_pred HHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 380 LLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 380 l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+.+++. ..| ..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 267 ~~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKV-DSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCC-CCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 988887 566 467889999999999999999999999999973
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=156.30 Aligned_cols=216 Identities=10% Similarity=0.051 Sum_probs=161.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+++++..+|++|..++..|+|++|+++|+++++..+.. . ....+++.++.+|...|++++|+ ..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~a~~~lg~~~~~~~~~~~A~---~~~~~~l~~~--- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-E-WAADAQFYLARAYYQNKEYLLAA---SEYERFIQIY--- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-T-THHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-c-chHHHHHHHHHHHHHhCcHHHHH---HHHHHHHHHC---
Confidence 45677899999999999999999999999999965432 2 22347889999999999999998 5677777653
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. +.
T Consensus 83 -p~~--------------------~~------------------------------------------------------ 87 (261)
T 3qky_A 83 -QID--------------------PR------------------------------------------------------ 87 (261)
T ss_dssp -TTC--------------------TT------------------------------------------------------
T ss_pred -CCC--------------------ch------------------------------------------------------
Confidence 110 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLL--------TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH 373 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~--------~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~ 373 (854)
.....+..+.+|.. +|++++|++.+++++..+ |+++.+...+..+.
T Consensus 88 ------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~------ 141 (261)
T 3qky_A 88 ------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR------ 141 (261)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH------
T ss_pred ------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH------
Confidence 00123345666666 888999999999999999 98876544433222
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
.+.. .....++++|.+|..+|++++|+.+|++++...|+ .+....+++++|.+|
T Consensus 142 --------~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~l~~~~ 195 (261)
T 3qky_A 142 --------ELRA-----KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-------------TPWADDALVGAMRAY 195 (261)
T ss_dssp --------HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------STTHHHHHHHHHHHH
T ss_pred --------HHHH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-------------CchHHHHHHHHHHHH
Confidence 1111 12344678999999999999999999999998431 122468999999999
Q ss_pred HHC----------CCcHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHh
Q 003047 454 LAC----------GKPVLAARCFQKSSLVFYKQP---LLWLRLAECCLMALE 492 (854)
Q Consensus 454 l~~----------Gk~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i~~~~ 492 (854)
..+ |++++|+.+|++++..+|+++ .++..++.++....+
T Consensus 196 ~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 196 IAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 987 889999999999999999995 456677777664433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=154.78 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN----------------LGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn----------------LG~iy~~~g~~~eAi~~f~kA 419 (854)
.++.++.+|..++..|++++|+.+|++++. .+| .++.+++. +|.+|..+|++++|+.+|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA-LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455667777777777777777777777777 566 34666666 999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+.+ .|.+..+++++|.+|...|++++|+.+|+++++++|+++.+|++||.++..
T Consensus 81 l~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 81 LQK----------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 998 355689999999999999999999999999999999999999999999874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-14 Score=153.64 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hchhcccCCcccccccc
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-------LAKY-------HTSSVFLSKALS-NSASLRKDKPLKLLTFS 438 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-------~g~~-------~eAi~~f~kAL~-~~~~l~~~~~l~~~~~~ 438 (854)
++|+..|++++. .+|. .+.+|+++|.++.. .|++ ++|+..|++|+. +
T Consensus 33 ~~a~~~~~~al~-~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------------- 94 (308)
T 2ond_A 33 KRVMFAYEQCLL-VLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------- 94 (308)
T ss_dssp HHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----------------
Confidence 456666666666 4553 45566666666542 4664 999999999999 5
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL-LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~-aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.|....+|+++|..+...|++++|..+|++++.+.|+++. +|..+|.++.. .+
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~----------------------- 148 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR---AE----------------------- 148 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH---HH-----------------------
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH---hc-----------------------
Confidence 2446789999999999999999999999999999999987 99999988762 21
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.++.|+.+|++|+.+.|....
T Consensus 149 ----------------------------------~~~~A~~~~~~a~~~~p~~~~------------------------- 169 (308)
T 2ond_A 149 ----------------------------------GIKSGRMIFKKAREDARTRHH------------------------- 169 (308)
T ss_dssp ----------------------------------CHHHHHHHHHHHHTSTTCCTH-------------------------
T ss_pred ----------------------------------CHHHHHHHHHHHHhcCCCCHH-------------------------
Confidence 136799999999998775321
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHH-HcCCHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVEL-EMENPVKAL 676 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l-~lg~~~~Al 676 (854)
++...+.+.. .+|++.+|+
T Consensus 170 ------------------------------------------------------------~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 170 ------------------------------------------------------------VYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTSCCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 1112222322 379999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.++++++. .|..+..+..++.+ +..+|++++|+.+|++++.. ..+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~-----~~~~g~~~~A~~~~~~al~~-~~l---------------------------- 235 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDY-----LSHLNEDNNTRVLFERVLTS-GSL---------------------------- 235 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHS-SSS----------------------------
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHhc-cCC----------------------------
Confidence 99999997 78888888777764 45789999999999999931 000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|. . ...+|.+++..+...|++++|..+++++++..|+++
T Consensus 236 --------~p~--------~-~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 236 --------PPE--------K-SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp --------CGG--------G-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred --------CHH--------H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 011 0 467788899999999999999999999999999864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-15 Score=142.41 Aligned_cols=147 Identities=12% Similarity=-0.021 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+.++.+|...|++++|++.+++++... |+++.+++.+|.++...|++++|++++++++. ..|. ...++.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLA-DAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHH
Confidence 455667899999999999999999999999 99999999999999999999999999999999 6774 5789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA----------------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc----------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHH
Confidence 999999999999999999998 3445788999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.+|.++.
T Consensus 149 ~la~~~~ 155 (186)
T 3as5_A 149 AIAFSYE 155 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=138.98 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. ..|. .+.++..+|.+|..+|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE-ANPI-NFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCcH-hHHHHHHHHHHHHHcCc
Confidence 34444455555555555555555 66666666777777777777777777777776 4553 45666667777777777
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++
T Consensus 126 ~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 126 FDEAIDSFKIALGL----------------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 77777777777766 223456667777777777777777777777777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-14 Score=151.26 Aligned_cols=217 Identities=7% Similarity=-0.070 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYA-------RRNH-------RKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~-------~g~~-------~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
++|...+++++..+ |+++.+|+.+|.++.. .|++ ++|+.+|++++...+| ....+|.++|.++
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 68999999999999 9999999999999874 4885 9999999999982277 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL-ITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~-~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
...|++++|+..|++++.+ .+.... +|.++|.++...|++++|..+|++++++.|..+.+|..
T Consensus 110 ~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhc----------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999997 233344 89999999999999999999999999999999988886
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
.+.+... .. ...+.|+.+|++
T Consensus 174 ~a~~~~~--~~---------------------------------------------------------~~~~~A~~~~~~ 194 (308)
T 2ond_A 174 AALMEYY--CS---------------------------------------------------------KDKSVAFKIFEL 194 (308)
T ss_dssp HHHHHHH--TS---------------------------------------------------------CCHHHHHHHHHH
T ss_pred HHHHHHH--Hc---------------------------------------------------------CCHHHHHHHHHH
Confidence 6554331 00 024789999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
|+.+.|....
T Consensus 195 al~~~p~~~~---------------------------------------------------------------------- 204 (308)
T 2ond_A 195 GLKKYGDIPE---------------------------------------------------------------------- 204 (308)
T ss_dssp HHHHHTTCHH----------------------------------------------------------------------
T ss_pred HHHhCCCcHH----------------------------------------------------------------------
Confidence 9999987431
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---C--CChHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL---P--DCSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~---p--~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l 717 (854)
++..++.++..+|++.+|+..+++++.. | .....+..++.++. ..|++++|+.++
T Consensus 205 ---------------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-----~~g~~~~a~~~~ 264 (308)
T 2ond_A 205 ---------------YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-----NIGDLASILKVE 264 (308)
T ss_dssp ---------------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-----HHSCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-----HcCCHHHHHHHH
Confidence 2456677888999999999999999984 3 25567766766544 579999999999
Q ss_pred Hhhhc
Q 003047 718 SMYLS 722 (854)
Q Consensus 718 ~~~l~ 722 (854)
++++.
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99983
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=149.89 Aligned_cols=167 Identities=8% Similarity=-0.044 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~n 397 (854)
..+.++..++..|++++|++.+++++... |++ +.+++.+|.+|+..|++++|++.|++++. ..|. ..+.+++
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~ 93 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHH
Confidence 55678999999999999999999999999 999 99999999999999999999999999999 5553 3467899
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 398 NLGCIYYQ--------LAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 398 nLG~iy~~--------~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
++|.+|.. +|++++|+.+|++++...|+-..- ................++++|.+|+..|++++|+.+|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 999999999999999984421000 000000000001122348999999999999999999999
Q ss_pred HHHhcCC---CHHHHHHHHHHHHHHHh
Q 003047 469 SSLVFYK---QPLLWLRLAECCLMALE 492 (854)
Q Consensus 469 AL~l~P~---~~~aw~~La~~~i~~~~ 492 (854)
++..+|+ .+.+|+.+|.|+...+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 9999999 56799999999996544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=149.01 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
+-..+++++.++ |+++.+++.+|..++..|++++|+++|++++. .+|. ++.+|+++|.+|..+|++++|+.+|+++
T Consensus 21 ~~~~l~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 21 SGATLKDINAIP--DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp TSCCTGGGCCSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHhCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345677888899 99999999999999999999999999999999 7994 6889999999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+.+ .|.++.+|+++|.+|..+|++++|+.+|++++.+.|+.+ +-..+..+
T Consensus 97 l~l----------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~--~~~~A~~l 146 (151)
T 3gyz_A 97 FAL----------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK--LKIKAQSY 146 (151)
T ss_dssp HHH----------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH--HHHHHHHH
T ss_pred Hhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH--HHHHHHHH
Confidence 999 345678999999999999999999999999999999976 34444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-14 Score=152.85 Aligned_cols=210 Identities=9% Similarity=-0.010 Sum_probs=154.9
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 364 SQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
|.+|...|++++|+++|.+++.. .+|...+.+++++|.+|..+|++++|+.+|++|+.+.+.... .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~ 113 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------F 113 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC----------H
Confidence 56778899999999999999883 233234678999999999999999999999999998554321 0
Q ss_pred CccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceee
Q 003047 440 DKSLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQ------PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHV 512 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~------~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 512 (854)
.....++.++|.+|... |++++|+.+|++++.++|+. ..+|.++|.++. +.+
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---~~g------------------ 172 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---LDG------------------ 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTT------------------
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---HhC------------------
Confidence 11256889999999996 99999999999999999865 567888888877 210
Q ss_pred ccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccc
Q 003047 513 IGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSE 592 (854)
Q Consensus 513 vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~ 592 (854)
.++.|+.+|++|+.+.|......
T Consensus 173 ---------------------------------------~~~~A~~~~~~al~~~~~~~~~~------------------ 195 (292)
T 1qqe_A 173 ---------------------------------------QYIEASDIYSKLIKSSMGNRLSQ------------------ 195 (292)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHTTSSCTTTG------------------
T ss_pred ---------------------------------------CHHHHHHHHHHHHHHHhcCCccc------------------
Confidence 24779999999999998854200
Q ss_pred ccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCH
Q 003047 593 GASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENP 672 (854)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~ 672 (854)
+ .....+.++|.+++.+|++
T Consensus 196 -------------------------------------------------~-----------~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 196 -------------------------------------------------W-----------SLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp -------------------------------------------------G-----------GHHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------------------------H-----------HHHHHHHHHHHHHHHcCCH
Confidence 0 0012467889999999999
Q ss_pred HHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHhhh
Q 003047 673 VKALAAARSLLE-LPDCSRIYIFLGHIYAAEALC--LLNRPKEAAEHFSMYL 721 (854)
Q Consensus 673 ~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~--~lgr~~eAl~~l~~~l 721 (854)
.+|+.++++++. .|............-+.+++. ..+++++|+..|++++
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999998 666554332211111222333 5788999999999887
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=149.89 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFL----------------KSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~l----------------la~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
.+.++..++..|++++|+..+++++.++ |+++.+++. +|.+|...|++++|+.+|++++. .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~ 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-K 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
Confidence 3557889999999999999999999999 999999999 99999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC--cHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK--PVLAARC 465 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk--~eeAl~~ 465 (854)
+|. .+.+++++|.+|..+|++++|+.+|++++.+ .|.+..+++++|.+|+..|+ .+.+..+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL----------------EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 895 6889999999999999999999999999998 35567899999999988765 4567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 466 FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 466 y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+++...|. ..+|+++|.++.
T Consensus 147 ~~~~~~~~~~-~~a~~~~g~~~~ 168 (208)
T 3urz_A 147 YKKLSSPTKM-QYARYRDGLSKL 168 (208)
T ss_dssp HC---CCCHH-HHHHHHHHHHHH
T ss_pred HHHHhCCCch-hHHHHHHHHHHH
Confidence 8887643332 236788887776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=172.54 Aligned_cols=136 Identities=10% Similarity=-0.071 Sum_probs=118.9
Q ss_pred HHhcCHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 332 LLTRNLKHAKREVKLAM--------NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 332 l~~~~~~~A~~elk~al--------~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
+..+++++|++.+++++ ..+ |++..+++.+|.+++..|++++|++.|+++++ .+|+ +..+++++|.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAE-RVGW-RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCcc-hHHHHHHHHHHH
Confidence 67788999999999999 888 99999999999999999999999999999998 6784 577888899999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+|++++|+.+|++|+++ .+.+..+++++|.+|..+|++++ +.+|+++++++|+++.+|+++
T Consensus 478 ~~~g~~~~A~~~~~~al~l----------------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT----------------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999999999998 34456888899999999999999 999999999999999999999
Q ss_pred HHHHH
Q 003047 484 AECCL 488 (854)
Q Consensus 484 a~~~i 488 (854)
|.++.
T Consensus 541 g~~~~ 545 (681)
T 2pzi_A 541 ARARS 545 (681)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98877
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-15 Score=141.40 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
.+|.++..+|++++|++.+++++. .+| ..+..++++|.+|.++|++++|+.+|++++.+ .|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~-~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----------------~p~ 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP-SPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----------------QER 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC-SHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc-cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCC
Confidence 368888999999999999999999 677 46778889999999999999999999999999 456
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++.+|+++|.+|...|++++|+.+|+++++++|+++.+|+++|.++.
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-12 Score=160.31 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQ 738 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~ 738 (854)
+..++.++..+|+++.|+++++++ .++.+|+..+. |++..|++..|..|..... .
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~-----acve~~Ef~LA~~cgl~Ii---v------------- 1278 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF-----ACVDGKEFRLAQMCGLHIV---V------------- 1278 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHH-----HHhhhhHHHHHHHHHHhhh---c-------------
Confidence 456677788888888888888888 34467766644 7778888888888776422 1
Q ss_pred hhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--H
Q 003047 739 WRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEAT--L 816 (854)
Q Consensus 739 ~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~--~ 816 (854)
.+..+..++..|..+|.+++|+.+++++|.++|.+..+. +
T Consensus 1279 --------------------------------------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1279 --------------------------------------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred --------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 234455788899999999999999999999998885555 7
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 003047 817 TAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~ 837 (854)
...|...+-++..+++..+.+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 778888889999999998877
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=146.43 Aligned_cols=147 Identities=16% Similarity=0.050 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------c-C
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNI--------ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR------T-E 388 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~--------~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~------~-d 388 (854)
....+.+|..+|++++|++.+++++.+ . |....+++.+|.++...|++++|+++|++++.. . .
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH--PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334577888899999999999999998 4 777889999999999999999999999999982 1 4
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--c-------------------C---C--ccc-----ccc-
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--K-------------------D---K--PLK-----LLT- 436 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~-------------------~---~--~l~-----~~~- 436 (854)
| ....++.++|.+|..+|++++|+.+|++++...+... . . . .+. ...
T Consensus 166 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 166 P-NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 4 4577899999999999999999999999999743210 0 0 0 000 000
Q ss_pred -ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 437 -FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 437 -~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
...+....+++++|.+|...|++++|+.+|++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0123456788999999999999999999999999764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=170.44 Aligned_cols=198 Identities=12% Similarity=0.011 Sum_probs=157.8
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh--------hccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY--------QNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~--------~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
+|+++..++..| +..|+|++|++.|++++ +..+...+ +++.++.+|...|++++|+ ..|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~-----~~~~~a~~~~~~g~~~~A~---~~~~~ 458 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE-----LPLMEVRALLDLGDVAKAT---RKLDD 458 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH-----HHHHHHHHHHHHTCHHHHH---HHHHH
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh-----HHHHHHHHHHhcCCHHHHH---HHHHH
Confidence 566666777767 88999999999999999 53333223 5888999999999999998 56787
Q ss_pred hhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCC
Q 003047 214 AFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQN 293 (854)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (854)
++.+. ++.
T Consensus 459 al~~~----p~~-------------------------------------------------------------------- 466 (681)
T 2pzi_A 459 LAERV----GWR-------------------------------------------------------------------- 466 (681)
T ss_dssp HHHHH----CCC--------------------------------------------------------------------
T ss_pred HhccC----cch--------------------------------------------------------------------
Confidence 77653 110
Q ss_pred CCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH
Q 003047 294 LTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH 373 (854)
Q Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~ 373 (854)
...++.++.+|..+|++++|++.+++++.++ |+++.+++.+|.++...|++
T Consensus 467 ---------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 467 ---------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNT 517 (681)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCC
T ss_pred ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCh
Confidence 1144557888899999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
++ ++.|+++++ .+|. .+.+++++|.+|..+|++++|+.+|++++++ .+....+++++|.++
T Consensus 518 ~~-~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 518 DE-HKFYQTVWS-TNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT----------------SRHFTTARLTSAVTL 578 (681)
T ss_dssp CT-TCHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----------------STTHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHH-hCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----------------CcccHHHHHHHHHHH
Confidence 99 999999999 7895 6889999999999999999999999999998 345678999999999
Q ss_pred HHCCCcHHH-HHHHHHHH
Q 003047 454 LACGKPVLA-ARCFQKSS 470 (854)
Q Consensus 454 l~~Gk~eeA-l~~y~kAL 470 (854)
+..+++++| ...+.+++
T Consensus 579 ~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 579 LSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp C-------CCHHHHHHHH
T ss_pred HccCCCCCCCHHHHHHHH
Confidence 887774443 33343333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=144.56 Aligned_cols=245 Identities=15% Similarity=0.058 Sum_probs=165.7
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 39 QSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
..|++++|+.+|++++++ +|..+.+++++|.+++..++ +.+++..+.+++..... .
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~-----~----- 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------YKEAAHLLNDALAIREK-----T----- 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHH-----H-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHH-----H-----
Confidence 345555666666666552 36678999999999887654 34456666665532100 0
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---chhhHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI---DETTALQI 187 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~ 187 (854)
...+++..+..++++|.+|..+|+|++|+++|++++...+.. ++.....+
T Consensus 77 ---------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 77 ---------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp ---------------------------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------------------------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 011256788899999999999999999999999999864322 11233457
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhh
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENAL 267 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (854)
+..++.+|...|++++|+ .++++++.+.....+..
T Consensus 130 ~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~~~~~------------------------------------------ 164 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVE---YYYRRALEIYATRLGPD------------------------------------------ 164 (283)
T ss_dssp HHHHHHHHHTTTCHHHHH---HHHHHHHHHHHHHSCTT------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHhcCCC------------------------------------------
Confidence 888999999999999998 56787776531110000
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 268 SRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
...........+.+|..+|++++|++.++++
T Consensus 165 -------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 165 -------------------------------------------------DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0001123344688889999999999999999
Q ss_pred HHhc-------CCCCCHHHHHHHHHHHHHhcC------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 348 MNIA-------RGKDSSLALFLKSQLEYARRN------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 348 l~~~-------~~P~~~~a~~lla~ly~~~g~------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
+.+. ..|.....+...+..+...+. +.++...+..... ..| ..+.++.++|.+|..+|++++|+.
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~ 273 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP-TVNTTLRSLGALYRRQGKLEAAHT 273 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH-HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9983 015566677777777776554 4455555555444 345 457789999999999999999999
Q ss_pred HHHHHHHh
Q 003047 415 FLSKALSN 422 (854)
Q Consensus 415 ~f~kAL~~ 422 (854)
+|++++++
T Consensus 274 ~~~~al~~ 281 (283)
T 3edt_B 274 LEDCASRN 281 (283)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999975
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=139.05 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++..+++.+|.+++..|++++|+.+|++++. .+|. ++.+|+++|.+|..+|++++|+.+|++++.
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888999 99999999999999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+ .|.++.+++++|.+|..+|++++|+.+|++++.+.|+++..+..+..+..
T Consensus 84 l----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 84 M----------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp H----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred c----------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 8 34567899999999999999999999999999999999877554444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=136.49 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=125.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++..++..|++++|+..+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+| . +.++..++.+..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~-~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-D-NSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-C-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-C-hHHHHHHHHHHH
Confidence 446888999999999999999999999 99999999999999999999999999999998 677 3 455655665533
Q ss_pred -HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHHH
Q 003047 405 -QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLWL 481 (854)
Q Consensus 405 -~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw~ 481 (854)
..++..+|+..|++++.. .|.+..+++++|.++...|++++|+.+|++++.++|+. +.+|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~----------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA----------------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred HhhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 334555689999999998 35568999999999999999999999999999999986 66999
Q ss_pred HHHHHHHH
Q 003047 482 RLAECCLM 489 (854)
Q Consensus 482 ~La~~~i~ 489 (854)
.||.++..
T Consensus 149 ~l~~~~~~ 156 (176)
T 2r5s_A 149 TFMDILSA 156 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999884
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=134.61 Aligned_cols=127 Identities=15% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++..+++.+|..++..|++++|+++|++++. .+|. ++.+|.++|.+|..+|++++|+.+|++++.
T Consensus 5 ~~l~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 5 GTLAMLRGLS--EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ----CCTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566778888 99999999999999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+ .|.++.+++++|.+|..+|++++|+.+|++++.++|+++..+..+..+..
T Consensus 81 ~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 81 M----------------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp H----------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred c----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 8 34567899999999999999999999999999999999887766665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=127.01 Aligned_cols=117 Identities=8% Similarity=-0.038 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|..+..++.+|..++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------- 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK----------- 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 45567899999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF------YKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~------P~~~~aw~~La~~~i 488 (854)
.|....+++++|.++..+|++++|+.+|++++.++ |+++.+|..++.|..
T Consensus 68 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 -----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 999999999998765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=139.66 Aligned_cols=240 Identities=10% Similarity=-0.046 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCCcc
Q 003047 316 TVDLKLKLQLYKVRFLLLTR-NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~-~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~~~ 392 (854)
.++|+....++++. +..+ ..++|++...+++.++ |++..+++.++.+....+ +++++++++.+++. .+|. +
T Consensus 29 ~~~y~~~~~~~~a~--~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-~nPk-~ 102 (306)
T 3dra_A 29 DEDYKQIMGLLLAL--MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-DNEK-N 102 (306)
T ss_dssp CHHHHHHHHHHHHH--HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-HCTT-C
T ss_pred CHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HCcc-c
Confidence 46677666665443 3444 4468999999999999 999999999999999999 99999999999999 7895 5
Q ss_pred HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH--HHH
Q 003047 393 SMFNNNLGCIY----YQL---AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV--LAA 463 (854)
Q Consensus 393 a~~~nnLG~iy----~~~---g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e--eAl 463 (854)
..+|+..+.++ ... +++++++.++.++|.. .+.+..+|++.+.++...|+++ +++
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----------------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----------------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 67999999999 777 8999999999999998 4667899999999999999998 999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCC
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSL 543 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~ 543 (854)
+++.+++.++|.|..+|.+.+.+....++. .
T Consensus 167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------------------------------~----------- 197 (306)
T 3dra_A 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------------------------------A----------- 197 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------------------------------C-----------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcccc--------------------------------------c-----------
Confidence 999999999999999999999876511000 0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCC
Q 003047 544 GSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGD 623 (854)
Q Consensus 544 ~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 623 (854)
+...++++..++++++.++|.+..
T Consensus 198 -----~~~~~~eEl~~~~~aI~~~p~n~S--------------------------------------------------- 221 (306)
T 3dra_A 198 -----TDNTIDEELNYVKDKIVKCPQNPS--------------------------------------------------- 221 (306)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCSSCHH---------------------------------------------------
T ss_pred -----hhhhHHHHHHHHHHHHHhCCCCcc---------------------------------------------------
Confidence 001268899999999999999652
Q ss_pred cccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHc-C---CCChHHHHHHHHH
Q 003047 624 AKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL-AAARSLLE-L---PDCSRIYIFLGHI 698 (854)
Q Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al-~~~~~lL~-~---p~~~~~~~~la~l 698 (854)
++..++.++..+|++..++ ..+.+++. . +..+-++.++|.+
T Consensus 222 ----------------------------------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 222 ----------------------------------TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 3455666777777765544 45566665 2 5677788788776
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhh
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l 721 (854)
|. ..|+.++|+++++...
T Consensus 268 ~~-----~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 268 YT-----QQKKYNESRTVYDLLK 285 (306)
T ss_dssp HH-----HTTCHHHHHHHHHHHH
T ss_pred HH-----ccCCHHHHHHHHHHHH
Confidence 65 5788888888888877
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-13 Score=135.49 Aligned_cols=163 Identities=10% Similarity=-0.051 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~n 397 (854)
..+.++..++..|++++|++.+++++... |+++ .+++.+|.+|+..|++++|++.|+++++ ..|... +.+++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCcHHHHHH
Confidence 34557888999999999999999999999 9874 7899999999999999999999999999 567432 34788
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 398 NLGCIYYQ------------------LAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 398 nLG~iy~~------------------~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.+|.+|.. +|++++|+..|++++...|+-..- .................+.+|.+|+..|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 89999987 579999999999999985421100 00000000000112334688999999999
Q ss_pred cHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 003047 459 PVLAARCFQKSSLVFYKQP---LLWLRLAECCL 488 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i 488 (854)
+++|+..|+++++.+|+++ .+|+.+|.|+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence 9999999999999999997 67999999988
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=156.92 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=110.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
.|++++|++.++++++++ |++..+++.+|.++...|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-LHPG-HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TSTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999999999 99999999999999999999999999999999 7884 6889999999999999999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+|+++++. .+.+..+++++|.+|...|++++|+++|+++++++|+++.+|.++|.++..
T Consensus 78 ~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 78 VLLQQASDA----------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999998 345678999999999999999999999999999999999999999999884
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=144.29 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=107.6
Q ss_pred hcCHHHHHHHHHHHHHhcC------CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIAR------GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLG 400 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~------~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG 400 (854)
+|++++|.+.++++.+... +|+.. ..+...|.+|...|++++|+++|.+++.. .++...+.+++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555430 02222 23445578899999999999999999983 12223467899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC----
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ---- 476 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~---- 476 (854)
.+|..+|++++|+.+|++|+.+.+.... ......++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGT----------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999999999999999998543321 01235788999999999 99999999999999999865
Q ss_pred --HHHHHHHHHHHH
Q 003047 477 --PLLWLRLAECCL 488 (854)
Q Consensus 477 --~~aw~~La~~~i 488 (854)
..+|.++|.++.
T Consensus 153 ~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 153 QAAELIGKASRLLV 166 (307)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 567888888877
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=131.70 Aligned_cols=117 Identities=14% Similarity=-0.018 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.++..++.+|.+++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------- 74 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-IAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV----------- 74 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 56678999999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+|+++|.+|..+|++++|+.+|++++.++|+++.+|++++.+.+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999888887665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=116.96 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=120.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|++++++++. ..|. ...+++++|.+|.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HCCC-chHHHHHHHHHHH
Confidence 345778888999999999999999999 99999999999999999999999999999998 6774 5778999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
..|++++|+.+|++++.. .+....+++.+|.++...|++++|+.+|++++.++|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999997 23456789999999999999999999999999999974
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=134.29 Aligned_cols=100 Identities=9% Similarity=-0.059 Sum_probs=88.9
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
+++-++-..|++++. .+| ..+.+++++|.+|.++|++++|+.+|++++.+ .|.++.+|+++|
T Consensus 16 ~~~~~~~~~l~~al~-l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------------~P~~~~~~~~lg 77 (151)
T 3gyz_A 16 IDAINSGATLKDINA-IPD-DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGLA 77 (151)
T ss_dssp HHHHHTSCCTGGGCC-SCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHH
T ss_pred HHHHHCCCCHHHHhC-CCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHH
Confidence 333344456677777 688 46889999999999999999999999999998 456789999999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|..+|++++|+.+|++++.++|+++.+|+++|.|+.
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=141.07 Aligned_cols=139 Identities=14% Similarity=0.027 Sum_probs=112.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----CccHHHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----GISSMFNNN 398 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~~~a~~~nn 398 (854)
+.+|..+|++++|++.+++++.+.+...+ ..++..+|.+|.. |++++|+++|++++.. .| .....++++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-FENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-HHhCCChhHHHHHHHH
Confidence 55677789999999999999999721222 4678899999999 9999999999999983 22 122578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|.+|..+|+|++|+.+|++++.+.++... ......+++++|.+++.+|++++|+.+|++++ ++|++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN----------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 999999999999999999999998543210 01124578899999999999999999999999 9998754
Q ss_pred H
Q 003047 479 L 479 (854)
Q Consensus 479 a 479 (854)
.
T Consensus 230 ~ 230 (307)
T 2ifu_A 230 S 230 (307)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=131.18 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHH------------------hcCHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL---ALFLKSQLEYA------------------RRNHRKAIKLLL 381 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~---a~~lla~ly~~------------------~g~~~kAl~~l~ 381 (854)
..+..+.+|..+|++++|++.++++++.+ |+++. +++.+|.+++. .|++++|++.|+
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 44556888999999999999999999999 99875 88999999987 579999999999
Q ss_pred HhhhccCCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH
Q 003047 382 ALSNRTEMGISSMFN-----------------NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL 444 (854)
Q Consensus 382 kal~~~dp~~~a~~~-----------------nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~ 444 (854)
+++. ..|+. +.++ ..+|.+|.++|++++|+..|++++...|+- +...+
T Consensus 121 ~~l~-~~P~~-~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------------~~~~~ 185 (225)
T 2yhc_A 121 KLVR-GYPNS-QYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT-------------QATRD 185 (225)
T ss_dssp HHHT-TCTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS-------------HHHHH
T ss_pred HHHH-HCcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC-------------CccHH
Confidence 9999 67753 3222 568999999999999999999999984311 12347
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 445 ITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 445 ~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+++.+|.+|..+|++++|+++|+++....|++..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 8999999999999999999999999999988643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-13 Score=141.19 Aligned_cols=149 Identities=11% Similarity=-0.032 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+..++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+..|++++. .+| .....+...+..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p-~~~~~~~~~~~~ 194 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQ-DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGC-SHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhc-chHHHHHHHHHH
Confidence 45667899999999999999999999999 99999999999999999999999999999999 688 456667777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw 480 (854)
+...++.++|+..|++++.. .|.+..+++++|.+|...|++++|+..|++++.++|++ +.+|
T Consensus 195 l~~~~~~~~a~~~l~~al~~----------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE----------------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHhhcccCccHHHHHHHHhc----------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 99999999999999999998 45678999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHH
Q 003047 481 LRLAECCLMAL 491 (854)
Q Consensus 481 ~~La~~~i~~~ 491 (854)
.+|+.++...+
T Consensus 259 ~~l~~~~~~~g 269 (287)
T 3qou_A 259 XTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 99999988533
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=125.32 Aligned_cols=119 Identities=20% Similarity=0.220 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+...++..+|+.++..|+|++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+.+.....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE-LDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD----- 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence 3456788999999999999999999999999 7995 68899999999999999999999999999986543210
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
......+++++|.++..+|++++|+++|++++.+.|+ +.....|.+
T Consensus 79 ----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 79 ----YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 0113568999999999999999999999999999885 666555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-13 Score=121.82 Aligned_cols=118 Identities=11% Similarity=0.004 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..+++.+|.+++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------- 79 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-RNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQL----------- 79 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-TCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------
Confidence 78889999999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.++..
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999999999999884
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=152.25 Aligned_cols=140 Identities=16% Similarity=0.052 Sum_probs=125.8
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--------------HHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--------------SMFNNNL 399 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--------------a~~~nnL 399 (854)
.+++++|++.++.++... |+++.+++.+|.+++..|+|++|+++|++++. ..|... ..+++++
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVS-WLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HhhccccCChHHHHHHHHHHHHHHHHH
Confidence 345566777777778888 99999999999999999999999999999999 677543 5899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+|..+|++++|+.+|+++|.+ .+....+++++|.+|+.+|++++|+.+|++++.++|+++.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL----------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999998 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003047 480 WLRLAECCLMALE 492 (854)
Q Consensus 480 w~~La~~~i~~~~ 492 (854)
|..|+.|+...++
T Consensus 267 ~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 267 KTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-12 Score=132.96 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGI---SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~---~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
.+++.+|.+|...|++++|+++|++++.. ..|.. ...+++|+|.+|..+|+|++|+.+|++++.+.+....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---- 231 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---- 231 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc----
Confidence 46677889999999999999999999842 23321 2268999999999999999999999999998532210
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHhcC
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLA-ARCFQKSSLVFY 474 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA-l~~y~kAL~l~P 474 (854)
......+++++|.+|..+|++++| ..+|++++.+..
T Consensus 232 ------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 232 ------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 112368899999999999999999 788999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-13 Score=131.36 Aligned_cols=116 Identities=8% Similarity=-0.060 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.....++.+|..++..|++++|+..|++++. .+|+ ++.+++++|.+|..+|++++|+.+|++++..
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~----------- 69 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSD-ELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE----------- 69 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-HHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----------
Confidence 55566789999999999999999999999999 7884 6889999999999999999999999999887
Q ss_pred cccccCCccHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQY-LACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~l-l~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+ ++..+..++.+. ...++..+|+.+|++++.++|+++.+|+.+|.++.
T Consensus 70 -----~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 70 -----YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp -----GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -----cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 23 344444444332 33345567899999999999999999999999988
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=117.77 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++..++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIE-LNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICI----------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----------
Confidence 66778999999999999999999999999999 6784 5788999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.+|..++.++...
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 2445789999999999999999999999999999999999999999999853
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=130.26 Aligned_cols=158 Identities=15% Similarity=0.002 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++.+|...|++++|++.+++++ . | ++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSIN-RDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-chHHHHHHHHHH
Confidence 4567889999999999999999884 5 5 789999999999999999999999999999 6884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+|++++|+.+|++++...+....-.-........+....+++++|.++...|++++|+.+|++++.+.|++.......
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 99999999999999999984421100000000001223468999999999999999999999999999999987666666
Q ss_pred HHHHH
Q 003047 484 AECCL 488 (854)
Q Consensus 484 a~~~i 488 (854)
+...+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=131.29 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=116.9
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH-HHHcCCH--
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI-YYQLAKY-- 409 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i-y~~~g~~-- 409 (854)
..|++++|++.+++++..+ |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.++.++|.+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 4688899999999999999 99999999999999999999999999999999 6784 57899999999 8899999
Q ss_pred HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.++|+++..+..+.
T Consensus 98 ~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALAL----------------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999998 3456789999999999999999999999999999999977665444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-11 Score=131.51 Aligned_cols=233 Identities=9% Similarity=-0.037 Sum_probs=186.5
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
...++|++++.++|. .+|. ...+|+..|.+...+| ++++++.++.++|.. .|....+|++
T Consensus 47 e~s~~aL~~t~~~L~-~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----------------nPk~y~aW~~ 108 (306)
T 3dra_A 47 EYSERALHITELGIN-ELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----------------NEKNYQIWNY 108 (306)
T ss_dssp CCSHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----------------CTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHH-HCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----------------CcccHHHHHH
Confidence 555799999999999 7995 6889999999999999 999999999999998 4667899999
Q ss_pred HHHHH----HHC---CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccccccee
Q 003047 449 CGLQY----LAC---GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYL 521 (854)
Q Consensus 449 LG~~l----l~~---Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l 521 (854)
.+.++ ... +++++++.++.+++.++|++..+|...+.+.. +.+
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~---~l~--------------------------- 158 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD---TFD--------------------------- 158 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTT---------------------------
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---Hhc---------------------------
Confidence 99999 777 78999999999999999999999999998766 210
Q ss_pred eeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccc
Q 003047 522 VMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNH 601 (854)
Q Consensus 522 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (854)
.+ ..+.+..++.+++..+|....
T Consensus 159 ----------~~------------------~~~~EL~~~~~~i~~d~~N~s----------------------------- 181 (306)
T 3dra_A 159 ----------LH------------------NDAKELSFVDKVIDTDLKNNS----------------------------- 181 (306)
T ss_dssp ----------CT------------------TCHHHHHHHHHHHHHCTTCHH-----------------------------
T ss_pred ----------cc------------------ChHHHHHHHHHHHHhCCCCHH-----------------------------
Confidence 00 024689999999999888542
Q ss_pred cccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC------HHHH
Q 003047 602 KSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN------PVKA 675 (854)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~------~~~A 675 (854)
++.+.++++..+|+ +.++
T Consensus 182 --------------------------------------------------------AW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 182 --------------------------------------------------------AWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp --------------------------------------------------------HHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHhccccchhhhHHHH
Confidence 35556777777777 8999
Q ss_pred HHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 676 LAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAE-HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 676 l~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
+.++++++. .|.+.+++.+++.++. .+|+..+++. ++.+.+. .+ +
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~-----~~~~~~~~~~~~~~~~~~--~~----------------------~---- 252 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHE-----RFDRSITQLEEFSLQFVD--LE----------------------K---- 252 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHH-----HTTCCGGGGHHHHHTTEE--GG----------------------G----
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHH-----hcCCChHHHHHHHHHHHh--cc----------------------C----
Confidence 999999997 9999999988887554 6788666555 4444441 10 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALS-ILPRSTEATL 816 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~-~~P~~~~a~~ 816 (854)
..|. .+.++..||.++..+|+.++|.++++.+.+ .+|-....+.
T Consensus 253 ---------~~~~----------s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 253 ---------DQVT----------SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp ---------TEES----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ---------CCCC----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHH
Confidence 0021 355667799999999999999999999997 7997754444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=120.41 Aligned_cols=111 Identities=6% Similarity=-0.103 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.+..++..|..+|++++|++.++++++++ |+++.+++.+|.+|+.+|++++|++.|++++. .+|. .+.+|+++|.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhh-hhHHHHHHHHH
Confidence 34457889999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
|..+|++++|+.+|+++|++ .|.+.+++.+++.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l----------------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV----------------DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHH----------------CcCCHHHHHHHHHhc
Confidence 99999999999999999999 345678888888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=136.89 Aligned_cols=117 Identities=10% Similarity=-0.034 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|++...++.+|..+...|++++|+..|++++. .+|+ ++.+++++|.+|..+|++++|+..|++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---------- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ-LSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---------- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----------
Confidence 89999999999999999999999999999999 7995 68899999999999999999999999998872
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+.....+.+.+..+...++.++|+..|++++.++|+++.+|++||.++.
T Consensus 182 ------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 182 ------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp ------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3334566788888999999999999999999999999999999999988
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=132.06 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=118.4
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---------------HHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---------------SMFNNN 398 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---------------a~~~nn 398 (854)
.+.++++.+.++...... +.....+..+|..++..|+|++|+++|.+++. ..|... ..++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -----CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHHH
Confidence 355555665555555555 66678899999999999999999999999998 566433 278999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|.+|..+|++++|+.+|++++.. .+....+++++|.+|..+|++++|+.+|++++.++|+++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKI----------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 999999999999999999999998 3456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 003047 479 LWLRLAECCLMALEK 493 (854)
Q Consensus 479 aw~~La~~~i~~~~~ 493 (854)
+|..++.|+....+.
T Consensus 158 ~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 158 IRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999865554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=132.08 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
....+.+.+..++..|+|++|+++|++++...+...+.. ...++..++.+|...+++++|+ .++++++.+.....
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai---~~~~~al~~~~~~~- 149 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCI---LELKKLLNQQLTGI- 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHH---HHHHHHHHTCCCCS-
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHH---HHHHHHHHHhcccc-
Confidence 344555678999999999999999999998554444432 2334555789999999999997 68888886531100
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+ .
T Consensus 150 ~-------------------------------~----------------------------------------------- 151 (293)
T 3u3w_A 150 D-------------------------------V----------------------------------------------- 151 (293)
T ss_dssp C-------------------------------T-----------------------------------------------
T ss_pred c-------------------------------H-----------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
.....++..+|.+|...|++++|+++|+++
T Consensus 152 --------------------------------------------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 152 --------------------------------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp --------------------------------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000134566778888888888888888888
Q ss_pred hhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 384 SNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 384 l~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
+.. .++.....+++|+|.+|..+|+|++|+.+|++++.+.+.... ......+++++|.+|..+|+
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS----------MALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----------CTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHhCC
Confidence 841 122234568899999999999999999999999998543321 12247899999999999996
Q ss_pred -cHHHHHHHHHHHHhc
Q 003047 459 -PVLAARCFQKSSLVF 473 (854)
Q Consensus 459 -~eeAl~~y~kAL~l~ 473 (854)
+++|+++|++|+.+.
T Consensus 252 ~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 252 EEAEIEDAYKKASFFF 267 (293)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 699999999998765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-12 Score=112.38 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
.+..++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-LDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------------
Confidence 457889999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+.
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3445789999999999999999999999999999999999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=123.61 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc------------------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRT------------------EMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~------------------dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
+..+..+|+.++..|+|++|+++|.+++. . +| ....+|+++|.+|..+|++++|+.+|++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT-RLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 46778899999999999999999999998 4 45 3467899999999999999999999999
Q ss_pred HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHh
Q 003047 419 ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAECCLMALE 492 (854)
Q Consensus 419 AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~~~i~~~~ 492 (854)
+|.+ .|....+|+++|.+|..+|++++|+.+|++++.++|+++ .++..|+.|......
T Consensus 89 al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR----------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc----------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9998 345688999999999999999999999999999999999 778888887765444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=136.32 Aligned_cols=231 Identities=12% Similarity=0.037 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 148 AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL-------LDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 148 ~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l-------~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
-.+-.|+-+ .-+++..|.++|.+++...+..-| +.+.+ +.++...++..+++ -.+.+.+++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~D-----aw~g~~a~g~~~~~~L~~~~r~~~a~---~~~~~~l~l~-- 77 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACD-----AWIGRIRCGDTDRVTLFRAWYSRRNF---GQLSGSVQIS-- 77 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHTTCCCHHHHHHHHHTGGGT---THHHHTTTCC--
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhH-----HHHhHHHccCCcHHHHHHHHHHHHHH---HHHHHHhcCC--
Confidence 344557766 689999999999999996655555 46666 68888888887776 4567777664
Q ss_pred cCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCC
Q 003047 221 NQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGL 300 (854)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (854)
+. ...
T Consensus 78 --p~------------------------------~l~------------------------------------------- 82 (282)
T 4f3v_A 78 --MS------------------------------TLN------------------------------------------- 82 (282)
T ss_dssp --GG------------------------------GGC-------------------------------------------
T ss_pred --hh------------------------------hhh-------------------------------------------
Confidence 10 000
Q ss_pred ccch-hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 301 SSNE-LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379 (854)
Q Consensus 301 ~~~~-~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~ 379 (854)
+..+ .| .|.+... ....+..+.+..+.+++..|++++|.+.+..++... |++. +++.+|.+++..+++++|+.+
T Consensus 83 a~~~~~g-~y~~~~~-~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 83 ARIAIGG-LYGDITY-PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CEEECCT-TTCCCEE-ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhccCC-ccccccc-ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 0111 11 0100000 111234467777999999999999999999999988 9999 999999999999999999999
Q ss_pred HHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC-Cc-cHHHHHHHHHHHHHCC
Q 003047 380 LLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ-DK-SLLITYNCGLQYLACG 457 (854)
Q Consensus 380 l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~-~~-~~~~~~nLG~~ll~~G 457 (854)
|+++....+|.....+++++|.++..+|++++|+.+|++++... . |. ..++++++|.++..+|
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---------------~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP---------------AGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST---------------TTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---------------CCccccHHHHHHHHHHHHHcC
Confidence 99888722231124578889999999999999999999998640 1 22 4578999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 458 KPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 458 k~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+.++|..+|++++..+|+ +.+|..|..
T Consensus 223 r~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999999 998888863
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-12 Score=134.08 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=125.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC--ccHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG--ISSMFN 396 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~--~~a~~~ 396 (854)
+...++..+++++|.+.++++++.. |.++. ++..+|.++...+++++|+++|++++.. ..++ ....++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4677889999999999999999988 77765 3446899999999999999999999983 1111 124579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|.+|..+|++++|+.+|++++.....+... .+....+++|+|.+|..+|+|++|+.+|++++.+.++.
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDN---------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999875433111 12245689999999999999999999999999998665
Q ss_pred ------HHHHHHHHHHHH
Q 003047 477 ------PLLWLRLAECCL 488 (854)
Q Consensus 477 ------~~aw~~La~~~i 488 (854)
+.+|+++|.|+.
T Consensus 230 ~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TBCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 788999999988
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=111.34 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=106.6
Q ss_pred CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 354 KDS-SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 354 P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
|.. ..+++.+|.++...|++++|+++|++++. ..|. ...+++++|.+|...|++++|+.+|++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------- 72 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------- 72 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------
Confidence 655 78899999999999999999999999999 6774 5788999999999999999999999999997
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.++..++.++..
T Consensus 73 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 73 ------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 234578899999999999999999999999999999999999999998773
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=117.59 Aligned_cols=118 Identities=12% Similarity=-0.024 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.++..++.+|..++..|++++|+.+|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 88899999999999999999999999999999 7884 6789999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-----QPLLWLRLAECCLM 489 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-----~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+ +..++..+..+...
T Consensus 73 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 73 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999 88888888877663
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=116.41 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
|++...++.+|..++..|++++|+++|++++. .+|. . ..++.++|.+|..+|++++|+.+|++++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG-LDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------- 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-SCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-Hccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------
Confidence 88999999999999999999999999999999 6774 3 678999999999999999999999999998
Q ss_pred ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+.
T Consensus 95 --------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 --------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp --------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-11 Score=123.73 Aligned_cols=123 Identities=9% Similarity=-0.090 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC----CHHHHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----KYHTSSV 414 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----~~~eAi~ 414 (854)
+|++.++++.+. .++.+++.+|.+|...+++++|+++|+++.. . .++.++++||.+|.. + ++++|+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 466677777765 4899999999999999999999999999988 2 246789999999998 7 9999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFY--KQPLLWLRLAECCL 488 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P--~~~~aw~~La~~~i 488 (854)
+|++|... ..+.+++++|.+|.. .+++++|+.+|+++++..| +++.++++||.++.
T Consensus 75 ~~~~A~~~------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 75 LAEKAVEA------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHHHT------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 99999775 357899999999998 8999999999999999998 46999999999988
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-10 Score=124.59 Aligned_cols=176 Identities=7% Similarity=-0.033 Sum_probs=146.2
Q ss_pred HhcCHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 333 LTRNLK-HAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 333 ~~~~~~-~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
..|.+. +|++....++.++ |++..++..++.+....++ ++++++++..++. .+|. +..+|+..+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~-~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPK-SYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH-hCCC-CHHHHHHHHH
Confidence 344444 7999999999999 9999999999999998877 7999999999999 7994 6889999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhcCCCHH
Q 003047 402 IYYQLAK--YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-PVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 402 iy~~~g~--~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-~eeAl~~y~kAL~l~P~~~~ 478 (854)
++..+++ +++++.++.++|.. .+.+..+|++.+.++...|+ ++++++++.+++.++|.|..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~----------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S 180 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEA----------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHhccCcccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999995 89999999999998 45678999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 003047 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQ 558 (854)
Q Consensus 479 aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~ 558 (854)
+|.+++.+....+... . . + +. ...+...++.+..
T Consensus 181 AW~~R~~ll~~l~~~~---~---------------------------------~-~-~~--------~~~~~~~~~eEle 214 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQP---D---------------------------------S-G-PQ--------GRLPENVLLKELE 214 (331)
T ss_dssp HHHHHHHHHHHHSCCC----------------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc---c---------------------------------c-c-cc--------cccchHHHHHHHH
Confidence 9999998877432210 0 0 0 00 0111124789999
Q ss_pred HHHHHHhhcCCCcccc
Q 003047 559 CLLNALHLLNYPDLNY 574 (854)
Q Consensus 559 ~l~nAL~L~p~~~~~~ 574 (854)
++.+|+.+.|++..+|
T Consensus 215 ~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 215 LVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999976543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=129.66 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
+.++..++..|++++|++.++++++.. |... ..++.+|.++...|++++|+++|++++.. .++.....
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 456788999999999999999999998 7664 34577899999999999999999999973 12212256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
+++++|.+|..+|++++|+.+|++|+.+....... ......+++|+|.+|..+|+|++|+.+|++++.+.+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~---------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc---------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999764322100 001236899999999999999999999999999975
Q ss_pred CC------HHHHHHHHHHHH
Q 003047 475 KQ------PLLWLRLAECCL 488 (854)
Q Consensus 475 ~~------~~aw~~La~~~i 488 (854)
+. +.+|+++|.|+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 42 778999999988
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=116.13 Aligned_cols=131 Identities=7% Similarity=-0.116 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-cHHHHHHHHHH
Confidence 45567888889999999999999999999 99999999999999999999999999999999 6784 57889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH--HHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT--YNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~--~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
|..+|++++|+.+|++++... +....++ +.++..+...|++++|+.++.++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~----------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999982 2334455 445555888899999999888866544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=107.61 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.+++.+|..+...|++++|+++|++++. ..|. ...+++.+|.+|...|++++|+.+|++++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------------- 64 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH-cCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 4678999999999999999999999998 6774 5788999999999999999999999999997
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++.
T Consensus 65 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 65 -DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 23456789999999999999999999999999999999999999998887
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=144.29 Aligned_cols=142 Identities=11% Similarity=-0.040 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.....+.+|..+|++++|++.++++++++ |++..+++.+|.+|...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~ 100 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVLLQQASD-AAPE-HPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHH
Confidence 44556888899999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhcCCCHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC---GKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|..+|++++|+.+|+++++. .+....+++++|.++... |++++|+++|+++++.+|++...
T Consensus 101 ~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQL----------------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 99999999999999999998 345678999999999999 99999999999999999987655
Q ss_pred HHHHH
Q 003047 480 WLRLA 484 (854)
Q Consensus 480 w~~La 484 (854)
|..++
T Consensus 165 ~~~l~ 169 (568)
T 2vsy_A 165 FAFLS 169 (568)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 54333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-13 Score=151.94 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=122.3
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--------------HHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--------------SMFNNNL 399 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--------------a~~~nnL 399 (854)
.+++++|++.++.++... |++..++..+|+.++..|+|++|+.+|++++. ..|... ..+|+|+
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS-WLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcccccCChHHHHHHHHHHHHHHHHH
Confidence 456667777777888888 99999999999999999999999999999999 667432 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+|.++|+|++|+.+|++||.+ .+....+|+++|.+|+.+|++++|+.+|+++++++|+++.+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGL----------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999998 34568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 003047 480 WLRLAECCLMALEK 493 (854)
Q Consensus 480 w~~La~~~i~~~~~ 493 (854)
|..|+.++....+.
T Consensus 388 ~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 388 RLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999865543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=122.20 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
..++.+|..++..|++++|+++|++++. | .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 66 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD---P--HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------------- 66 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC---C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------
Confidence 4578899999999999999999999964 4 3678999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP----------------LLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~----------------~aw~~La~~~i 488 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|++. .+|+++|.++.
T Consensus 67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 345678999999999999999999999999999888877 99999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=111.47 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+.+..++.+|.+++..|++++|+.+|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++...+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----- 74 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE-LDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED----- 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----
Confidence 4567889999999999999999999999999 6784 57899999999999999999999999999984421100
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
......+++++|.++...|++++|+.+|++++.+.| ++.++..++.+.....+
T Consensus 75 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 75 ----YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 001167899999999999999999999999999999 69999999988775443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=123.16 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc------c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI------S-----SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~------~-----a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
..++.+|+.++..|+|++|++.|++++. .+|.. . +.+|+|+|.++.++|+|++|+.+|++||.++..-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4678899999999999999999999999 66641 2 3389999999999999999999999999982110
Q ss_pred ccCCccccccccCCccHHHH----HHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLIT----YNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~----~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
.. ..|.+..+| |++|.+|..+|++++|+.+|++++++.|++..++-.+..+
T Consensus 91 ~e---------~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GE---------LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CC---------TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cc---------CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 00 013467888 9999999999999999999999999999987766555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-10 Score=119.18 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHH----c
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQ----L 406 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~----~ 406 (854)
++++|++.+++++ . +.++.+++.+|.+|.. .+++++|+++|+++.. ..|. ..+.++++||.+|.. .
T Consensus 68 ~~~~A~~~~~~A~--~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAV--E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHH--H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCC
Confidence 6777888888884 4 6689999999999998 8999999999999998 4441 136789999999999 8
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-C-----CcHHHHHHHHHHHHhcCCCHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-G-----KPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-G-----k~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+++++|+.+|++|+.. +....+++++|.+|... | ++++|+.+|+++++.. ++.+.
T Consensus 143 ~d~~~A~~~~~~A~~~-----------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~ 203 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL-----------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGC 203 (212)
T ss_dssp CCHHHHHHHHHHHHHT-----------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHH
T ss_pred CCHHHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHH
Confidence 9999999999999986 22456899999999875 3 7999999999999884 45555
Q ss_pred HHHHH
Q 003047 481 LRLAE 485 (854)
Q Consensus 481 ~~La~ 485 (854)
..|+.
T Consensus 204 ~~l~~ 208 (212)
T 3rjv_A 204 EEFDR 208 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-12 Score=120.92 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=86.0
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
-..|++++. .+| ....+++++|.++...|++++|+.+|++++.. .|.++.+|+++|.++...
T Consensus 7 ~~~~~~al~-~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~ 68 (148)
T 2vgx_A 7 GGTIAMLNE-ISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAM 68 (148)
T ss_dssp CCSHHHHTT-CCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHc-CCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----------------CcccHHHHHHHHHHHHHH
Confidence 356778888 678 46788999999999999999999999999998 355788999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 457 GKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 457 Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|++++|+.+|++++.++|+++.+|+++|.|+.
T Consensus 69 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999988
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-11 Score=113.44 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
+..++.+|..++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------- 76 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-LNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-------------- 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence 36788999999999999999999999999 6884 5889999999999999999999999999998
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999977776644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-12 Score=115.99 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
++.+|..++..|++++|+..|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+ .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~ 81 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-KEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML----------------D 81 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------C
Confidence 34455555555555555555555555 4552 3455555555555555555555555555555 2
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
|....+++++|.+|...|++++|+.+|++++.++|+++
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 23345555555555555555555555555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=144.86 Aligned_cols=271 Identities=11% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
++...++.++..+++++|++.+.+ .+++..+..++..+...|++++|+++++.+.+ ..+ .+.+...|+.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~--~~~i~~~Li~~ 103 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCc--cchhHHHHHHH
Confidence 333456666667777777766643 23444666666677777777777777776666 333 13456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|.++|++.+++.+|+. +...+|+++|..+...|+|++|..+|.++ ..|.+
T Consensus 104 Y~Klg~l~e~e~f~~~----------------------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 104 LAKTNRLAELEEFING----------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp -----CHHHHTTTTTC----------------------C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHhCCHHHHHHHHcC----------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7777777766655531 23358999999999999999999999987 46999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
||.|++ +.+ .++.|..|+++
T Consensus 154 LA~~L~---~Lg---------------------------------------------------------~yq~AVea~~K 173 (449)
T 1b89_A 154 LASTLV---HLG---------------------------------------------------------EYQAAVDGARK 173 (449)
T ss_dssp HHHHHH---TTT---------------------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHH---Hhc---------------------------------------------------------cHHHHHHHHHH
Confidence 999988 320 24679999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
| ..+..
T Consensus 174 A-----~~~~~--------------------------------------------------------------------- 179 (449)
T 1b89_A 174 A-----NSTRT--------------------------------------------------------------------- 179 (449)
T ss_dssp H-----TCHHH---------------------------------------------------------------------
T ss_pred c-----CCchh---------------------------------------------------------------------
Confidence 8 11211
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
|-....++...|++..|..+...+...|+ ...-+..+| ...|+++||+.+|+.++
T Consensus 180 ----------------Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad---~l~~lv~~Y-----ek~G~~eEai~lLe~aL- 234 (449)
T 1b89_A 180 ----------------WKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYY-----QDRGYFEELITMLEAAL- 234 (449)
T ss_dssp ----------------HHHHHHHHHHTTCHHHHHHTTTTTTTCHH---HHHHHHHHH-----HHTTCHHHHHHHHHHHT-
T ss_pred ----------------HHHHHHHHHHcCcHHHHHHHHHHHHhCHh---hHHHHHHHH-----HHCCCHHHHHHHHHHHh-
Confidence 22335678899999999888887554443 333455555 47899999999999999
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc--CCHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ--GEFERAHHF 800 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~--g~~e~A~~~ 800 (854)
.++ + +...++..||..|++- +++.++++.
T Consensus 235 -~le--------------------------------------~----------ah~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 235 -GLE--------------------------------------R----------AHMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp -TST--------------------------------------T----------CCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCc--------------------------------------H----------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 332 1 1577888899998887 888889988
Q ss_pred HHHHHhhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003047 801 VTQALSILP-----RSTEATLTAIYVDLMLGKSQEALAKLKYCNHV 841 (854)
Q Consensus 801 ~~~Al~~~P-----~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~ 841 (854)
|...+.+.| ..+..+.-++|++..-|+++.|..++-.|...
T Consensus 266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 888877766 66778889999999999999999988776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=130.93 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|..++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------- 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 67889999999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+....+++++|.+|..+|++++|+.+|++++.++|+++
T Consensus 68 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 68 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 345678999999999999999999999999999999764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-10 Score=127.56 Aligned_cols=152 Identities=7% Similarity=-0.033 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHhhhccCCCccHH
Q 003047 316 TVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR-NHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g-~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
..+|+....++++. .......++|++.+.+++.++ |++..++..++.+....| .++++++++++++. .+|. +..
T Consensus 50 ~~~y~~~~~~~r~~-~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPK-ny~ 124 (349)
T 3q7a_A 50 SEEYKDAMDYFRAI-AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLK-SYQ 124 (349)
T ss_dssp CHHHHHHHHHHHHH-HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCC-CHH
T ss_pred CHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCC-cHH
Confidence 46777766666443 333345578999999999999 999999999999999999 59999999999999 7994 688
Q ss_pred HHHHHHHHHHHc-C-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH--------HHHH
Q 003047 395 FNNNLGCIYYQL-A-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV--------LAAR 464 (854)
Q Consensus 395 ~~nnLG~iy~~~-g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e--------eAl~ 464 (854)
+|+..+.++..+ + ++++++.++.++|.. .+.+..+|++.+.++...|+++ ++++
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~----------------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLP----------------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSS----------------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 999999999998 8 999999999999997 4567899999999999999988 9999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++.++++++|.|..+|.+++.+..
T Consensus 189 ~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 189 WCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999997755
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=138.18 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEG 107 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 107 (854)
.+.+.+|...+..|+|++|++.|+++++..|.........++.+.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------- 49 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK----------------------------------- 49 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-----------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-----------------------------------
Confidence 356788999999999999999999999988876543322221100
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQ 186 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~ 186 (854)
. ..+...+++++|.+|+.+|+|++|+++|++++...+.+.+.. ...
T Consensus 50 -------------------------------~--~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 50 -------------------------------R--RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp -------------------------------H--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred -------------------------------H--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 0 111233678999999999999999999999999888877654 333
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+..+++.++...|++++|+. ++++++.+.......
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~------------------------------------------ 131 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIF---VCEKSIEFAKREKRV------------------------------------------ 131 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHH---HHHHHHHHHHHSSCC------------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHhCcc------------------------------------------
Confidence 55557788999999999984 567666553111000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
.....+....+.+|...|++++|...++.
T Consensus 132 ---------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 132 ---------------------------------------------------FLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp ---------------------------------------------------SSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 00123445568889999999999999999
Q ss_pred HHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 347 AMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEM-GISSMFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 347 al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp-~~~a~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
++....+ |....+++.+|.+|...|++++|..+|++++.. .+| .....++..+|.+|...|+|.+|..+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9887522 444778999999999999999999999999873 222 1235678889999999999999999999
Q ss_pred HHHHhc
Q 003047 418 KALSNS 423 (854)
Q Consensus 418 kAL~~~ 423 (854)
+++...
T Consensus 241 ~a~~~~ 246 (434)
T 4b4t_Q 241 ESFESY 246 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999974
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-11 Score=109.87 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
.+++.+|..++..|++++|++.|++++. ..|... +.+++++|.+|..+|++++|+.+|++++...++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--------- 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------
Confidence 3578899999999999999999999999 677432 2688899999999999999999999999983210
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+....+++++|.++...|++++|+.+|++++..+|+++.++..+..+..
T Consensus 73 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 73 ----DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp ----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 1126889999999999999999999999999999999988776665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=109.29 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|.+++..|++++|+.+|++++. .+|. ...++.++|.+|..+|++++|+.+|++++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV----------- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 88999999999999999999999999999999 6784 5788999999999999999999999999998
Q ss_pred cccccCCc--cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCCH
Q 003047 434 LLTFSQDK--SLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 434 ~~~~~~~~--~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+. ...+++++|.++... |++++|+++|++++...|+++
T Consensus 70 -----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 -----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp -----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred -----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 234 578999999999999 999999999999999999864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-10 Score=104.15 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+.++...|++++|++.+++++... |+++.+++.+|.++...|++++|+++|++++. .+|. .+.++.++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-IDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cCcc-CHHHHHHHHH
Confidence 355667899999999999999999999999 99999999999999999999999999999999 6884 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
+|..+|++++|+.+|++++.. .+....+++++|.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL----------------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998 3445788999999999998863
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=129.80 Aligned_cols=132 Identities=6% Similarity=-0.062 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNR 386 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~ 386 (854)
.....++.+|..+|++++|++.+++++.+. |++ ..+++.+|.+|+..|++++|+++|++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 355667899999999999999999999999 999 69999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH-HH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA-RC 465 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl-~~ 465 (854)
.+|. ++.+++++|.+|..+|++++|+.+|++++.+ .|....+++++|.++..+|++++|. ..
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL----------------YPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 6889999999999999999999999999998 3456789999999999999999994 67
Q ss_pred HHHHHHhc
Q 003047 466 FQKSSLVF 473 (854)
Q Consensus 466 y~kAL~l~ 473 (854)
|.+++...
T Consensus 288 ~~~~~~~~ 295 (336)
T 1p5q_A 288 YANMFERL 295 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=123.53 Aligned_cols=215 Identities=13% Similarity=-0.024 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHHHhccccCCCCCCCCCcccceeeccc
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL-------AECCLMALEKGLVAPGRSLSDGSEVKVHVIGK 515 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L-------a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~ 515 (854)
..-+|..|.-+ ..+++.+|.++|.+++.++|+.+++|+.+ +.++..+++.
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~---------------------- 63 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS---------------------- 63 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT----------------------
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH----------------------
Confidence 45567778876 68999999999999999999999999999 4554433331
Q ss_pred cccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccc-cCCCCCCccccccccccc
Q 003047 516 GKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSK-FGLPSNSSVEESESSEGA 594 (854)
Q Consensus 516 g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 594 (854)
..+..+++.++.+.|.....+.. .++
T Consensus 64 --------------------------------------~~a~~~~~~~l~l~p~~l~a~~~~~g~--------------- 90 (282)
T 4f3v_A 64 --------------------------------------RRNFGQLSGSVQISMSTLNARIAIGGL--------------- 90 (282)
T ss_dssp --------------------------------------GGGTTHHHHTTTCCGGGGCCEEECCTT---------------
T ss_pred --------------------------------------HHHHHHHHHHhcCChhhhhhhhccCCc---------------
Confidence 22566788888888886542210 000
Q ss_pred ccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHH
Q 003047 595 SSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVK 674 (854)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~ 674 (854)
-||..... ..+..+...+|.++...|+|.+
T Consensus 91 --------------------------y~~~~~~v------------------------~~r~dl~LayA~~L~~~g~y~e 120 (282)
T 4f3v_A 91 --------------------------YGDITYPV------------------------TSPLAITMGFAACEAAQGNYAD 120 (282)
T ss_dssp --------------------------TCCCEEEC------------------------SSHHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------------cccccccc------------------------CCHhHHHHHHHHHHHHCCCHHH
Confidence 01101100 0011334466788999999999
Q ss_pred HHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 675 ALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 675 Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
|.+.+..++. .|... .+..+|.+ +..++|+++|+.+|++... .
T Consensus 121 A~~~l~~~~~~~p~~~-~~~~~a~l-----~~~~~r~~dA~~~l~~a~~--~---------------------------- 164 (282)
T 4f3v_A 121 AMEALEAAPVAGSEHL-VAWMKAVV-----YGAAERWTDVIDQVKSAGK--W---------------------------- 164 (282)
T ss_dssp HHHHHTSSCCTTCHHH-HHHHHHHH-----HHHTTCHHHHHHHHTTGGG--C----------------------------
T ss_pred HHHHHHHHHhcCCchH-HHHHHHHH-----HHHcCCHHHHHHHHHHhhc--c----------------------------
Confidence 9999999886 55555 77777764 4478999999999987772 1
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCHHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL--PR-STEATLTAIYVDLMLGKSQE 830 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~--P~-~~~a~~l~~y~~L~~G~~~e 830 (854)
|. | .-...++++||.++..+|++++|+.+|++++.-. |. .+.+++.++.++.++|+.++
T Consensus 165 -----------~d---~----~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 165 -----------PD---K----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp -----------SC---H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------CC---c----ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 10 0 0125678999999999999999999999998654 55 56789999999999999999
Q ss_pred HHHHHHh
Q 003047 831 ALAKLKY 837 (854)
Q Consensus 831 A~~~lk~ 837 (854)
|..++++
T Consensus 227 A~~~l~~ 233 (282)
T 4f3v_A 227 AVALLEW 233 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-10 Score=105.77 Aligned_cols=118 Identities=8% Similarity=-0.078 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++..+...|++++|++.+++++.++ |+++.+++.+|.+++..|++++|++.|++++. .+|. .+.+++++|.+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHH
Confidence 4457888999999999999999999999 99999999999999999999999999999999 7885 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
..+|++++|+.+|++++.+.++... .+.+..++..++.+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~----------~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNN----------GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHT----------TTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCC----------chhHHHHHHHHHHHHHh
Confidence 9999999999999999999543221 13345677667766544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-09 Score=117.95 Aligned_cols=103 Identities=9% Similarity=-0.106 Sum_probs=91.5
Q ss_pred HHhcCHH-HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 368 YARRNHR-KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK----------YHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 368 ~~~g~~~-kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~----------~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
...|+++ +|++++.+++. .+|. +..+|+..+.+...+++ +++++.++.++|..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~-~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG-ANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT-TCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHcCCCCHHHHHHHHHHHH-HCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------------
Confidence 3556665 89999999999 7994 68899999999998877 68899999999987
Q ss_pred ccCCccHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGK--PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk--~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|....+|++.+.++...++ +++++.++.+++.++|.|..+|.+.+.+..
T Consensus 104 --~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~ 155 (331)
T 3dss_A 104 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA 155 (331)
T ss_dssp --CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46788999999999999995 899999999999999999999999997765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=105.75 Aligned_cols=116 Identities=9% Similarity=-0.098 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCC-chHHHHHHHHH
Confidence 44557888999999999999999999999 99999999999999999999999999999999 6884 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
|..+|++++|+.+|++++... +....+++++|.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD----------------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----------------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhC----------------CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999982 3456788999999988774
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=111.65 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.++.+|...|++++|++.+++++.++ |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+|+++|.+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHH
Confidence 55667899999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~ 423 (854)
|..+|++++|+.+|++++.+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999983
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=108.65 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGI 391 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~ 391 (854)
.+....+.+|...|++++|++.+++++.+. |+.. .++..+|.++...|++++|++++++++.. .++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 355667888999999999999999999987 5432 47889999999999999999999999873 12212
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
...++.++|.+|..+|++++|+.+|++++...+.... .+....+++++|.++...|++++|+++|++++.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc----------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3568889999999999999999999999998543210 112357889999999999999999999999999
Q ss_pred hcCCC
Q 003047 472 VFYKQ 476 (854)
Q Consensus 472 l~P~~ 476 (854)
+....
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=136.49 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=107.6
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
..|++++|.+-+++. + ++..|..+|..+...|++++|++.|.++ .+| ..|..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~---~----~~~vWs~La~A~l~~g~~~eAIdsfika---~D~----~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDP----SSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCH----HHHHHHHHHHHhCCCHHHH
Confidence 456677787777766 2 2358889999999999999999999764 233 3577788889999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+.|++++++.. +.+.+...++.+|.++|+++++.+.|+. |+. .+|..+|.+|..
T Consensus 81 i~yl~~ark~~-----------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~a~~~IGd~~~~--- 134 (449)
T 1b89_A 81 VKYLQMARKKA-----------------RESYVETELIFALAKTNRLAELEEFING-----PNN-AHIQQVGDRCYD--- 134 (449)
T ss_dssp ---------------------------------------------CHHHHTTTTTC-----C------------------
T ss_pred HHHHHHHHHhC-----------------ccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-HHHHHHHHHHHH---
Confidence 99999888751 1245566788899999999998888753 543 488888888772
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+ .++.|..+|.++ .
T Consensus 135 ~g---------------------------------------------------------~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 135 EK---------------------------------------------------------MYDAAKLLYNNV--------S 149 (449)
T ss_dssp -----------------------------------------------------------CTTTHHHHHHHT--------T
T ss_pred cC---------------------------------------------------------CHHHHHHHHHHh--------h
Confidence 10 124488888865 1
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
.
T Consensus 150 n------------------------------------------------------------------------------- 150 (449)
T 1b89_A 150 N------------------------------------------------------------------------------- 150 (449)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFS 732 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~ 732 (854)
+.+||.++..+|++.+|+++++++ ..+..++.+.. +|+..|+++.|..|..... .
T Consensus 151 ------~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~-----aCv~~~ef~lA~~~~l~L~---~------- 205 (449)
T 1b89_A 151 ------FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF-----ACVDGKEFRLAQMCGLHIV---V------- 205 (449)
T ss_dssp ------HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHH-----HHHHTTCHHHHHHTTTTTT---T-------
T ss_pred ------HHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHH-----HHHHcCcHHHHHHHHHHHH---h-------
Confidence 346788999999999999999999 35777766654 8999999999966655422 1
Q ss_pred chhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 733 GEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 733 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|.-.-.+...|...|++++|..+++++|.++|.+.
T Consensus 206 --------------------------------------------~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 206 --------------------------------------------HADELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred --------------------------------------------CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 111233577889999999999999999999998873
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 813 --EATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 813 --~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
..-+...|...+-|+..+.+..+.+
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445667777788888888888766
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-09 Score=117.12 Aligned_cols=180 Identities=10% Similarity=-0.017 Sum_probs=148.4
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL 444 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~ 444 (854)
+....+..++|++++.+++. .+|. +..+|+..|.++..+| .+++++.++.++|.. .|+...
T Consensus 63 ~~~~~e~se~AL~lt~~~L~-~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----------------nPKny~ 124 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR-MNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----------------NLKSYQ 124 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------TCCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHH-hCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCCcHH
Confidence 33344777899999999999 7995 6889999999999999 599999999999998 467889
Q ss_pred HHHHHHHHHHHC-C-CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceee
Q 003047 445 ITYNCGLQYLAC-G-KPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLV 522 (854)
Q Consensus 445 ~~~nLG~~ll~~-G-k~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~ 522 (854)
+|++.+.++... + +++++++++.+++.++|+|..+|...+.+....++. +.
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~---~~------------------------ 177 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL---GR------------------------ 177 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT---TC------------------------
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---cc------------------------
Confidence 999999999998 8 899999999999999999999999999887744432 00
Q ss_pred eccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccc
Q 003047 523 MEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHK 602 (854)
Q Consensus 523 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (854)
. ....++.+..++.+++..+|.+.
T Consensus 178 ---------~----------------~~~~~~eELe~~~k~I~~dp~N~------------------------------- 201 (349)
T 3q7a_A 178 ---------I----------------SEAQWGSELDWCNEMLRVDGRNN------------------------------- 201 (349)
T ss_dssp ---------C----------------CHHHHHHHHHHHHHHHHHCTTCH-------------------------------
T ss_pred ---------c----------------chhhHHHHHHHHHHHHHhCCCCH-------------------------------
Confidence 0 00125789999999999998854
Q ss_pred ccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC-------HHHH
Q 003047 603 SLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN-------PVKA 675 (854)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~-------~~~A 675 (854)
+++...++++..+++ +.++
T Consensus 202 ------------------------------------------------------SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 202 ------------------------------------------------------SAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp ------------------------------------------------------HHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHhccccccchHHHHHH
Confidence 235566777777776 7899
Q ss_pred HHHHHHHHc-CCCChHHHHHHHHHHH
Q 003047 676 LAAARSLLE-LPDCSRIYIFLGHIYA 700 (854)
Q Consensus 676 l~~~~~lL~-~p~~~~~~~~la~lY~ 700 (854)
++++++++. .|.+.+++.++..++.
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999997 9999999988777554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=9e-11 Score=114.87 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=91.2
Q ss_pred HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 367 EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 367 y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
+...|++++|++.|++++. .+|. .+.+++.+|.+|..+|++++|+.+|++++.. .+....++
T Consensus 20 ~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR-ANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQL----------------RGENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHH-HCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HCSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHH
Confidence 4567999999999999999 7884 6789999999999999999999999999998 24457899
Q ss_pred HHHHHH-HHHCCCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 447 YNCGLQ-YLACGKP--VLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 447 ~nLG~~-ll~~Gk~--eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|.+ +...|++ ++|+.+|++++.++|+++.+|+.+|.++.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999 8899999 99999999999999999999999999988
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=122.25 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 148 AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET------------TALQICLLLLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 148 ~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~------------~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
.....|.-+...|+|.+|+++|.++++..+...+. ....++..++.+|...|++++|++ ++++++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~---~~~~~~ 82 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLRE---FIPHST 82 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHTH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 46678999999999999999999999966654432 123456779999999999999984 667766
Q ss_pred hcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCC
Q 003047 216 SVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLT 295 (854)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (854)
.+..... ... . .
T Consensus 83 ~~~~~~~--------------------------------~~~-----------------------~-----~-------- 94 (434)
T 4b4t_Q 83 EYMMQFA--------------------------------KSK-----------------------T-----V-------- 94 (434)
T ss_dssp HHHHTSC--------------------------------HHH-----------------------H-----H--------
T ss_pred HHHHHcc--------------------------------chH-----------------------H-----H--------
Confidence 5541110 000 0 0
Q ss_pred CCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhc
Q 003047 296 RPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR----GKDSSLALFLKSQLEYARR 371 (854)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~----~P~~~~a~~lla~ly~~~g 371 (854)
..+.+++|. ++...|++++|++.++.++.... .+.-...+..+|.+|...|
T Consensus 95 ---~~~~~~l~~----------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 95 ---KVLKTLIEK----------------------FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp ---HHHHHHHHH----------------------HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 001122222 33345666777777777766541 1233667889999999999
Q ss_pred CHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHH
Q 003047 372 NHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~ 447 (854)
+|++|++++++++.. .+......+++++|.+|..+|++++|..+|++++.+.+.+... .......+.
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~ 220 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP---------TQTVAELDL 220 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc---------hHHHHHHHH
Confidence 999999999998873 1222457789999999999999999999999999985433210 011356778
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
++|..+...|+|++|..+|.+++...+
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 899999999999999999999998654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-11 Score=108.92 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=86.1
Q ss_pred HhcCHHHHHHHHHHhhhcc---CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 369 ARRNHRKAIKLLLALSNRT---EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~---dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
..|++++|+.+|++++. . +| ..+.+++++|.+|..+|++++|+.+|++++.. .|....+
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------------FPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchHH
Confidence 46899999999999999 5 57 46789999999999999999999999999998 3456789
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++++|.++...|++++|+.+|++++.+.|+++.++.....+..
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=121.11 Aligned_cols=159 Identities=9% Similarity=-0.086 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...++.+|...|++++|++.+++++..+ |+++.+++.+|.+|...|++++|++.|++++. .+|. +..+++++|.+|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHH
Confidence 3446888899999999999999999999 99999999999999999999999999999999 7884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccC-Cc--------------cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKD-KP--------------LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~-~~--------------l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
..+|++++|+.+|++++.+.++.... .. ........+....+...++..+ .|++++|++.|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQR 160 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSG
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 99999999999999999986542100 00 0011111223344555555544 7999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 003047 469 SSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i 488 (854)
+++++|++..++..++....
T Consensus 161 al~~~p~~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEA 180 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHH
T ss_pred hhccccchhhhhhHHHHHHH
Confidence 99999999888888876554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=115.09 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=73.5
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK----------YHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~----------~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
+.|++|++.+++++. .+|. .+.+|+++|.++..+++ +++|+.+|++||++ .|
T Consensus 16 ~~feeA~~~~~~Ai~-l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l----------------dP 77 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK-SNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----------------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----------------CT
T ss_pred hHHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----------------Cc
Confidence 445555555555555 4452 34455555555555544 67999999999999 45
Q ss_pred ccHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 441 KSLLITYNCGLQYLACG-----------KPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~G-----------k~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....+|+++|.+|..+| ++++|+.+|++|++++|++..+|..+-.+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67899999999999985 89999999999999999999888877643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=111.82 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=111.8
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcC
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g 407 (854)
+..|++++|.+.++.+.... +....++..+|.++...|++++|+.+|++++.. .++.....+++++|.+|..+|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45788999988555555433 477889999999999999999999999999983 122245778999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--H----HHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--P----LLWL 481 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~----~aw~ 481 (854)
++++|+.+|++++.+....... ......+++++|.++...|++++|+.+|++++.+.+.. + .++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPED---------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCcc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999999985433200 00235688999999999999999999999999876432 2 2356
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.+|.++.
T Consensus 152 ~la~~~~ 158 (203)
T 3gw4_A 152 GLGDLAQ 158 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6776666
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=97.59 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. ..|. .+.++.++|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHH
Confidence 44556888999999999999999999999 99999999999999999999999999999999 6774 57889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG 457 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G 457 (854)
|...|++++|+.+|++++.. .+....++.++|.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL----------------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999998 3445678889999887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=125.39 Aligned_cols=118 Identities=11% Similarity=-0.003 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc---------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR---------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~---------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..+..+|..++..|+|++|++.|++++.. .+| ....+|+++|.+|.++|++++|+.+|++||.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56777889999999999999999988861 244 35788999999999999999999999999998
Q ss_pred chhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 423 SASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 423 ~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+....+++++|.+|..+|++++|+.+|+++++++|+++.+|..++.++....+
T Consensus 303 ----------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 303 ----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999886544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=105.27 Aligned_cols=93 Identities=6% Similarity=0.069 Sum_probs=83.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc------cHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI------SSMFNNNLG 400 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~------~a~~~nnLG 400 (854)
.+..|..+|++++|++.++++++++ |+++.+++.+|.+|+.+|+|++|++.|++++. .+|.. .+.+|.++|
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE-VGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH-hCcccchhhHHHHHHHHHHH
Confidence 3556667899999999999999999 99999999999999999999999999999998 34321 245789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003047 401 CIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+|..+|++++|+.+|+++|..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999997
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=106.68 Aligned_cols=98 Identities=7% Similarity=-0.111 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+|. ++.+++++|.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-MDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CcHHHHHHHHH
Confidence 45567889999999999999999999999 99999999999999999999999999999999 7885 57789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhch
Q 003047 403 YYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~ 424 (854)
|..+|++++|+.+|++++.+.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999844
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=105.92 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++.+++..|++++|+..+++++.++ |+++.+++.+|.++...|++++|+.+|++++. .+|. .+.++.++|.+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHH
Confidence 446888999999999999999999999 99999999999999999999999999999999 7895 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhc
Q 003047 405 QLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~ 423 (854)
.+|++++|+.+|+++++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999974
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-11 Score=136.06 Aligned_cols=129 Identities=6% Similarity=-0.149 Sum_probs=111.2
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
..+|++++|++.++++++++ |++..+++.+|.+|..+|++++|++.|++++. .+|. .+.+++++|.+|..+|++++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34799999999999999999 99999999999999999999999999999999 7884 68899999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH--HHHCCCcHHHHHHHH-----------HHHHhcCCCHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ--YLACGKPVLAARCFQ-----------KSSLVFYKQPL 478 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~--ll~~Gk~eeAl~~y~-----------kAL~l~P~~~~ 478 (854)
|+.+|++++++. +....++++++.+ +...|++++|+++|+ +++.+.|+...
T Consensus 93 A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 93 ALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHS----------------TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 999999999982 3345678888888 899999999999999 88888887644
Q ss_pred HH
Q 003047 479 LW 480 (854)
Q Consensus 479 aw 480 (854)
.+
T Consensus 157 ~~ 158 (477)
T 1wao_1 157 PK 158 (477)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=111.34 Aligned_cols=145 Identities=10% Similarity=0.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-CCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----T-EMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~-dp~~~a 393 (854)
.....+.+|..+|++++|.+.+++++.+.+. |....++..+|.++...|++++|+++|++++.. . +|....
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4445678888999999999999999994310 556778899999999999999999999999983 1 221346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.+++++|.+|..+|++++|+.+|++++...+.... ......++.++|.++...|++++|+.+|++++.+.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD----------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999997443210 01124567899999999999999999999999988
Q ss_pred CCCH
Q 003047 474 YKQP 477 (854)
Q Consensus 474 P~~~ 477 (854)
....
T Consensus 178 ~~~~ 181 (203)
T 3gw4_A 178 AELE 181 (203)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=127.37 Aligned_cols=174 Identities=6% Similarity=-0.057 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
..++|++.+.+++.++ |++..+|+.++.++...|+ +++|++++++++. .+|. +..+|++.|.++.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHH
Confidence 4467899999999999 9999999999999999999 9999999999999 7994 68899999999999
Q ss_pred cC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 406 LA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG-KPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 406 ~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G-k~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
++ ++++|+.++.++++. .+.+..+|++.|.++...| .++++++++.++++++|++..+|.+
T Consensus 120 l~~~~~~~el~~~~k~l~~----------------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA----------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhh----------------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 99 669999999999998 3567899999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
++.++...+.. .++ + . . ..+....+++|..++++
T Consensus 184 r~~ll~~l~~~--~~~---------------~-----------------~----~--------~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 184 RSCLLPQLHPQ--PDS---------------G-----------------P----Q--------GRLPENVLLKELELVQN 217 (567)
T ss_dssp HHHHHHHHSCC--CCS---------------S-----------------S----C--------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--ccc---------------c-----------------c----c--------ccccHHHHHHHHHHHHH
Confidence 99988743321 000 0 0 0 00111247999999999
Q ss_pred HHhhcCCCccccc
Q 003047 563 ALHLLNYPDLNYS 575 (854)
Q Consensus 563 AL~L~p~~~~~~~ 575 (854)
|+.+.|++..+|.
T Consensus 218 ai~~~P~~~saW~ 230 (567)
T 1dce_A 218 AFFTDPNDQSAWF 230 (567)
T ss_dssp HHHHCSSCSHHHH
T ss_pred HHhhCCCCccHHH
Confidence 9999999887663
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-10 Score=111.51 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----------------LALFLKSQLEYARRNHRKAIKLLLALSNR 386 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----------------~a~~lla~ly~~~g~~~kAl~~l~kal~~ 386 (854)
....++.++...|++++|++.+++++.+. |+++ .+++.+|.+++..|++++|+++|++++.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 44567889999999999999999999999 9887 8999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
.+|. .+.+++++|.+|..+|++++|+.+|++++.+ .+....++.+++.++...++.+++.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL----------------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 6889999999999999999999999999998 3456788999999999988887776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-09 Score=95.52 Aligned_cols=111 Identities=9% Similarity=-0.064 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.++...|++++|++.+++++... |+++.+++.+|.++...|++++|++++++++. .+|. .+.++.++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hCcc-cHHHHHHHHHH
Confidence 34456888999999999999999999999 99999999999999999999999999999999 6884 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
|..+|++++|+.+|++++.. .+....++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH----------------EANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHhh
Confidence 99999999999999999998 344567777777664
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=112.17 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=97.9
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH----------RKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~----------~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.+++|++.+++++.++ |+++.+++.+|.++...+++ ++|+..|+++++ .+|. .+.+|+++|.+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHH
Confidence 466799999999999999 99999999999999999876 599999999999 7995 688999999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 404 YQLA-----------KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 404 ~~~g-----------~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
..+| ++++|+.+|++||++. |.+ ..|.+++++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~----------------P~~---------------------~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----------------PDN---------------------THYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----------------TTC---------------------HHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC----------------CCC---------------------HHHHHHHHH
Confidence 9885 8999999999999992 222 367888999
Q ss_pred cCCCHHHHHHHH
Q 003047 473 FYKQPLLWLRLA 484 (854)
Q Consensus 473 ~P~~~~aw~~La 484 (854)
.+..+.+|+.+.
T Consensus 134 ~~ka~el~~~~~ 145 (158)
T 1zu2_A 134 TAKAPQLHAEAY 145 (158)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHhCHhccCccc
Confidence 999999999887
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=110.94 Aligned_cols=147 Identities=14% Similarity=0.017 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCC-ccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD------SSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMG-ISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~------~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~-~~a 393 (854)
.....+++|+.+|+.+.|.+.++++...+ |+ .+..++.-|.+.+..| ++++|+.+|+++.. ..|. ...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-~~p~~~~~ 214 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-TFPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-TSCSHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hCCCcccH
Confidence 33446899999999999999999999999 83 3444455576677777 99999999999887 5563 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..+.+ ++.++|++++|...++++++..+.+.+.+ ...+.++.++.|+..+...+|+ +|.+++.++.++.
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~------~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE------NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH------HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc------cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 34433 89999999999999998777644331100 0013467888899999999998 8999999999999
Q ss_pred CCCHHHHHHH
Q 003047 474 YKQPLLWLRL 483 (854)
Q Consensus 474 P~~~~aw~~L 483 (854)
|++|.+.-..
T Consensus 284 P~hp~i~d~~ 293 (310)
T 3mv2_B 284 HEHAFIKHHQ 293 (310)
T ss_dssp CCCHHHHHHH
T ss_pred CCChHHHHHH
Confidence 9999875433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.9e-10 Score=102.01 Aligned_cols=99 Identities=12% Similarity=-0.028 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|+..+++++.++ |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCch-hHHHHHHHHHH
Confidence 44567889999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchh
Q 003047 403 YYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
|..+|++++|+.+|++++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=100.62 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
..+++.+|.+++..|++++|+++|++++.. .++.....+++++|.+|..+|++++|+.+|++++...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 357789999999999999999999999973 122122358889999999999999999999999998543321
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ------PLLWLRLAECCL 488 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~------~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.+.+.. +.++..+|.++.
T Consensus 85 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 11235688999999999999999999999999986433 456777777776
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=134.81 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+.+.+++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|.++|++++|+.+|++|+++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------ 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE-LNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL------------ 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------
Confidence 3445667788999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.+|..+|++++|+++|+++++++|+++.+|..++.+.
T Consensus 70 ----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 70 ----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999983
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=128.22 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS-----------------MFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a-----------------~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
...++.+|+.++..|+|++|+.+|++++. ..|. .. .+|+++|.+|.++|++++|+.+|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-YMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-HSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-Hhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566777777777777777777777777 4553 22 37899999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+ .+.+..+|+++|.+|+.+|++++|+.+|++++.++|+++.+|..|+.+..
T Consensus 257 l~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 257 LTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 998 34567899999999999999999999999999999999999999997644
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=106.20 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHhhhcc---
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD-------SSL-----ALFLKSQLEYARRNHRKAIKLLLALSNRT--- 387 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~-------~~~-----a~~lla~ly~~~g~~~kAl~~l~kal~~~--- 387 (854)
..+.++..+...|++++|++.+++++.+. |+ +.. +|..+|.++...|+|++|+.+|++++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~-l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH-YFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhc
Confidence 34557888889999999999999999999 99 554 999999999999999999999999999 7
Q ss_pred ----CCCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 388 ----EMGISSMFN----NNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 388 ----dp~~~a~~~----nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+|+ .+.+| +++|.++..+|++++|+.+|++|+++.|+
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 894 68899 99999999999999999999999999654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=127.63 Aligned_cols=146 Identities=8% Similarity=-0.077 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhcC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCC
Q 003047 323 LQLYKVRFLLLTRN----------LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 323 l~l~K~~lyl~~~~----------~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~ 390 (854)
.+.+|..++...++ ++++++.+++++..+ |++..+|+.++.++...+ ++++|+++++++++ .+|.
T Consensus 65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~-~d~~ 141 (567)
T 1dce_A 65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE-ADER 141 (567)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh-hccc
Confidence 66778888888888 999999999999999 999999999999999999 77999999999999 7995
Q ss_pred ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-------------
Q 003047 391 ISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC------------- 456 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~------------- 456 (854)
+..+|+..|.+...+| .++++++++.++++. .+.+..+|+++|.++..+
T Consensus 142 -N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----------------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 142 -NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----------------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp -CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----------------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred -cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------------CCCCccHHHHHHHHHHhhccccccccccccc
Confidence 6789999999999999 999999999999997 456789999999999985
Q ss_pred -CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 457 -GKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 457 -Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++++|++++++|+.++|++..+|++++.++.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 55799999999999999999999999998766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-09 Score=95.76 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---HHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---SMFNNN 398 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---a~~~nn 398 (854)
+.++.+++..|++++|++.+++++... |+++ .+++.+|.+++..|++++|+++|++++. ..|. . +.++++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-RYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HCCC-CcccHHHHHH
Confidence 346788899999999999999999999 9998 8999999999999999999999999999 6774 4 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+|.+|..+|++++|+.+|++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999983
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=104.26 Aligned_cols=116 Identities=11% Similarity=-0.064 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh------------------cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNI------------------ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~------------------~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
...++..+...|++++|++.+++++.+ . |.+..+++.+|.+|+..|+|++|+..+++++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD--RKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH--HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH--HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345788889999999999999999999 7 88889999999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH-HHHHHHHHHHHHCCCc
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL-LITYNCGLQYLACGKP 459 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~-~~~~nLG~~ll~~Gk~ 459 (854)
.+|. ++.+|+++|.+|..+|++++|+.+|++++.+. |.+. .+...++.+....+++
T Consensus 92 -~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----------------p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 92 -REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH----------------PAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------GGGHHHHHHHHHHHHHHHHHH
T ss_pred -cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHHHHHH
Confidence 7894 68899999999999999999999999999993 3333 4455666665554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-09 Score=96.24 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc-------HHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS-------SMFN 396 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~-------a~~~ 396 (854)
.+..+.+|...|++++|+..+++++... |+++.+++.+|.++...|++++|+.+|++++. ..| .. +.++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGR-ENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHH-HSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hcc-ccchhHHHHHHHH
Confidence 3456788899999999999999999999 99999999999999999999999999999998 444 22 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.++|.+|..+|++++|+.+|++++... ++...+..++.++...++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-----------------RTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999971 245677777777665443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=122.84 Aligned_cols=122 Identities=8% Similarity=-0.068 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
....++.+|..+|++++|+..+++++.+. |++ ..+++.+|.+|+.+|+|++|+++|++++. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-L 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c
Confidence 45567899999999999999999999999 999 79999999999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
+|. ++.+|+++|.+|..+|++++|+.+|++|+++. +.+..++.+++.++..++++++|..
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----------------P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----------------PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 68899999999999999999999999999982 3456789999999999999998874
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=125.10 Aligned_cols=136 Identities=10% Similarity=-0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-----------------LALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-----------------~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
....++.+|...|++++|+..+++++.+. |++. .+++.+|.+|+..|+|++|+++|++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567888999999999999999999999 9987 4899999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH-HCCCcHHHHH
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL-ACGKPVLAAR 464 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll-~~Gk~eeAl~ 464 (854)
.+|. +..+|+++|.+|..+|++++|+.+|++++.+. +.+..++.+++.+.. ..++.+++..
T Consensus 259 -~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----------------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 259 -EEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA----------------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp -HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred -hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 68899999999999999999999999999982 345677888888844 4556888999
Q ss_pred HHHHHHHhcCCCHH
Q 003047 465 CFQKSSLVFYKQPL 478 (854)
Q Consensus 465 ~y~kAL~l~P~~~~ 478 (854)
.|.+++...|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-09 Score=90.54 Aligned_cols=85 Identities=24% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|...+.+++++|.+|..+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3345678899999999999999999999999998 244578899999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 003047 469 SSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i~ 489 (854)
++.++|+++.+|.++|.++..
T Consensus 69 a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 69 ALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999998873
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-10 Score=101.47 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=77.8
Q ss_pred hcCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 334 TRNLKHAKREVKLAMNI---ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~---~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
+|++++|++.+++++.+ + |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+++++|.+|..+|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQG--KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-chHHHHHHHHHHHHcCCHH
Confidence 58889999999999999 8 99999999999999999999999999999999 7885 6889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003047 411 TSSVFLSKALSN 422 (854)
Q Consensus 411 eAi~~f~kAL~~ 422 (854)
+|+.+|++++..
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-09 Score=96.68 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
..+..+..+...|++++|++.+++++.+. |++ ..+++.+|.++...|++++|+++|++++. .+|. .+.+++++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-KDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCcc-CHHHHHHH
Confidence 45567889999999999999999999999 998 89999999999999999999999999999 6884 57899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
|.+|..+|++++|+.+|++++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.92 E-value=7e-09 Score=115.60 Aligned_cols=122 Identities=8% Similarity=-0.052 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMN----------------IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~----------------~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
...++..|...|++++|++.+++++. +. |.+..+++.+|.+|+..|++++|+++|++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALE-I 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-h
Confidence 45568899999999999999999999 77 88899999999999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
+|. .+.+++++|.+|..+|++++|+.+|++|+++ .+.+..++..++.++..+++++++...
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l----------------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI----------------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 6889999999999999999999999999998 344678899999999999998888643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-09 Score=91.65 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+++++|.+|...|++++|+.+|++++.. .+....+++++|.++..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 568899999999999999999999999998 3456789999999999999999999999999999
Q ss_pred cCCC------HHHHHHHHHHHHHHHh
Q 003047 473 FYKQ------PLLWLRLAECCLMALE 492 (854)
Q Consensus 473 ~P~~------~~aw~~La~~~i~~~~ 492 (854)
+|++ +.+++++|.++...+.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999986553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-09 Score=90.80 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=86.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQ 405 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~ 405 (854)
.+.+|...|++++|+..+++++.+. |++..+++.+|.++...|++++|+++|++++. ..|. ....++.++|.+|..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-VIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCcccchHHHHHHHHHHHHH
Confidence 5667788999999999999999999 99999999999999999999999999999999 6773 057889999999999
Q ss_pred c-CCHHHHHHHHHHHHHhc
Q 003047 406 L-AKYHTSSVFLSKALSNS 423 (854)
Q Consensus 406 ~-g~~~eAi~~f~kAL~~~ 423 (854)
+ |++++|+.+|++++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGC
T ss_pred HhCCHHHHHHHHHHHhhcc
Confidence 9 99999999999999873
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=91.73 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH
Q 003047 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 375 kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
+|++.|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.. .+....+|+++|.+|.
T Consensus 3 ~a~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLA-QGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDF----------------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHT-TTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHH
Confidence 56777777777 5673 5667777888888888888888888888776 2344667777888888
Q ss_pred HCCCcHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 003047 455 ACGKPVLAARCFQKSSLVFYK--QPLLWLRLAECCL 488 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~--~~~aw~~La~~~i 488 (854)
..|++++|+.+|++++.+.|+ +...+..+...+.
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 888888888888888877774 3455555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.8e-10 Score=98.59 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+.+... +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~----- 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT-AQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE--H----- 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT--S-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc--H-----
Confidence 457889999999999999999999999999 7884 578999999999999999999999999999832110 0
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
......+++++|.++..+|++++|+..|++.
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 74 ---VAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 0001678899999999999999888776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=116.26 Aligned_cols=146 Identities=6% Similarity=-0.086 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcC---CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCcc
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIAR---GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGIS 392 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~---~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~ 392 (854)
-++..+..+|++++|+..+++++.+.. ||+++ ..+..+|.+|..+|+|++|+.+|++++.. ..| ..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HH
Confidence 345557789999999999999999874 46665 56788999999999999999999999973 345 46
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+..++|||.+|..+|++++|+.+|++||.+....-..+ .|.-.++..+++.++..++++++|...|+++.+.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS--------HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999955421111 1233567789999999999999999999998776
Q ss_pred cCCCHHHH
Q 003047 473 FYKQPLLW 480 (854)
Q Consensus 473 ~P~~~~aw 480 (854)
.-++-..|
T Consensus 465 ~~~~~~~~ 472 (490)
T 3n71_A 465 ALNNQPMQ 472 (490)
T ss_dssp HHTC----
T ss_pred HhcCCCCc
Confidence 65555555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.6e-08 Score=91.98 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=103.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYH 410 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~ 410 (854)
+++++|++.++++.+.. ... +. +|.+|...+.+++|+++|+++.. . ..+.++++||.+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF--GC--LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT--HH--HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC--CHh--hh--HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 46788999999999887 443 44 99999999999999999999998 3 246789999999999 89999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+|+.+|++|.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+..+|+.
T Consensus 79 ~A~~~~~~Aa~~------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 79 KAAQYYSKACGL------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHHcC------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 999999999986 246899999999999 89999999999999987 56677666653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=89.84 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
+|++.+++++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4788899999999 99999999999999999999999999999999 7884 678999999999999999999999999
Q ss_pred HHHhch
Q 003047 419 ALSNSA 424 (854)
Q Consensus 419 AL~~~~ 424 (854)
++.+.+
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999844
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-08 Score=84.12 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..+++.+|.+++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence 35677888999999999999999999999998 6774 5778888999999999999999999999988
Q ss_pred cccccCCccHHHHHHHHHHHHHCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACG 457 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~G 457 (854)
.+....+++++|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 3445678888998887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.7e-05 Score=91.29 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCC-hHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhhcCCCCCCCCCCch
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLEL-PDC-SRIYIFLGHIYAAEALCLL-NRPKEAAEHFSMYLSGGDNFDLPFSGE 734 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~-~~~~~~la~lY~aeAl~~l-gr~~eAl~~l~~~l~~~~~~~~~~~~~ 734 (854)
++...+......|+...|...+.+++.. |.. ...|...|.+ -... ++++.|...|..++..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l-----E~~~~~d~e~Ar~ife~~Lk~----------- 499 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI-----EYHISKDTKTACKVLELGLKY----------- 499 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH-----HHTTTSCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHH-----------
Confidence 3445555666789999999999999986 543 3444332221 1234 4599999999999931
Q ss_pred hhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Q 003047 735 DCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPR---S 811 (854)
Q Consensus 735 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~---~ 811 (854)
+|. .+..+...+......|+.+.|..+|++|+...|+ .
T Consensus 500 ----------------------------------~p~-----~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 500 ----------------------------------FAT-----DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp ----------------------------------HTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred ----------------------------------CCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 111 2445555666677789999999999999999884 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 812 TEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 812 ~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
..++...+-.+.+.|+.+.+..+.++ .+..|.+|
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 45666667778899999999999988 77777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.70 E-value=0.00024 Score=85.17 Aligned_cols=225 Identities=9% Similarity=0.030 Sum_probs=159.9
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS-VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ 452 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi-~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ 452 (854)
+....+|++++. ..|. .+.+|...+.++...|+.++|. ..|++|+.. .|....+|+..+..
T Consensus 326 ~Rv~~~Ye~aL~-~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----------------~P~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 326 ARMTYVYMQAAQ-HVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC----------------IPNSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHHHHHHHHH-HTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHH
Confidence 456678888888 6774 6788888888888888888887 899999887 34456778888888
Q ss_pred HHHCCCcHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHHHHhccccCCCCCCCCCcccce
Q 003047 453 YLACGKPVLAARCFQKSSLVF-----------YK-----------QPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKV 510 (854)
Q Consensus 453 ll~~Gk~eeAl~~y~kAL~l~-----------P~-----------~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~ 510 (854)
....|++++|...|++++... |. .+.+|...+.+.. +.+
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er---R~~---------------- 448 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK---RIQ---------------- 448 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH---HHH----------------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH---HcC----------------
Confidence 889999999999999998763 43 3446766666544 110
Q ss_pred eeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccc
Q 003047 511 HVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590 (854)
Q Consensus 511 ~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~ 590 (854)
.++.|+..|..|+...|....
T Consensus 449 -----------------------------------------~l~~AR~vf~~A~~~~~~~~~------------------ 469 (679)
T 4e6h_A 449 -----------------------------------------GLAASRKIFGKCRRLKKLVTP------------------ 469 (679)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHTGGGSCT------------------
T ss_pred -----------------------------------------CHHHHHHHHHHHHHhcCCCCh------------------
Confidence 136699999999876332110
Q ss_pred ccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHc-
Q 003047 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEM- 669 (854)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~l- 669 (854)
.++...|.+-...
T Consensus 470 ------------------------------------------------------------------~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 470 ------------------------------------------------------------------DIYLENAYIEYHIS 483 (679)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHHTTT
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHhC
Confidence 0122223344444
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
+++..|...+.++|. .|..+..+...+. -++..|+.+.|...|++++. ..
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~-----fe~~~~~~~~AR~lferal~--~~---------------------- 534 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLD-----FLIYVNEESQVKSLFESSID--KI---------------------- 534 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHH-----HHHHHTCHHHHHHHHHHHTT--TS----------------------
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH--hc----------------------
Confidence 459999999999997 6777666544444 34567999999999999993 11
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
|. + .-...+|.-....-...|+.+.+.++..+++...|+++
T Consensus 535 ----------------~~------~-~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 535 ----------------SD------S-HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp ----------------SS------T-THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred ----------------CC------H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 10 0 01456665566666677999999999999999999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=87.43 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSM-FNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~-~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+|..++..|++++|++.|++++. .+|. .+. +++++|.+|..+|++++|+.+|++++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ-TEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-HCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555555554 3442 233 4444555555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=84.92 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
|+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE-TDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999 7885 567899999999999999999999999999843
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=100.17 Aligned_cols=145 Identities=11% Similarity=0.022 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----CccHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK--DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----GISSMFNN 397 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P--~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~~~a~~~n 397 (854)
++.+++|...|++++|++.+.+.+..+ | ++.+++.+.+.++..+|+.++|.+.+++... .+| ++...+..
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDND--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-AIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCccccccchHHHHHH
Confidence 467899999999999999999999988 8 8999999999999999999999999999887 566 22233332
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh---
Q 003047 398 NLGCIYYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV--- 472 (854)
Q Consensus 398 nLG~iy~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l--- 472 (854)
.-+.+....| ++.+|..+|+++....++ ......++| +++++|++++|...+++++++
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~--------------~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT--------------WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--------------HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC--------------cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 2366677777 999999999997665210 002456666 899999999999999988887
Q ss_pred -------cCCCHHHHHHHHHHHHH
Q 003047 473 -------FYKQPLLWLRLAECCLM 489 (854)
Q Consensus 473 -------~P~~~~aw~~La~~~i~ 489 (854)
+|+++.+..+++.|...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHH
Confidence 48899999999988884
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=83.35 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=70.0
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQ 467 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~ 467 (854)
+|. .+.+++++|.+|..+|++++|+.+|++++.. .|....+|+++|.+|...|++++|+.+|+
T Consensus 3 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 3 DPE-DPFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp --C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 573 6789999999999999999999999999998 34456899999999999999999999999
Q ss_pred HHHHhcCCC--HHHHHHHHHHHH
Q 003047 468 KSSLVFYKQ--PLLWLRLAECCL 488 (854)
Q Consensus 468 kAL~l~P~~--~~aw~~La~~~i 488 (854)
+++.+.|+. ......+...+.
T Consensus 66 ~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 66 QGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhhhcCCchhHHHHHHHHHH
Confidence 999998754 444555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=108.79 Aligned_cols=156 Identities=6% Similarity=0.047 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK-----KPDDP---KILHNIAIAEYFRDGCTDPKKLLEALNNVKNK 93 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-----~~~~~---~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (854)
.+...++.+..++..+..+|+|++|+.+|+++|++ .|++| .+++|||.+|..++++.. ++...+++
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~e------A~~~~~~a 377 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEE------ASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 34556777888888899999999999999999985 56665 679999999987766444 55545554
Q ss_pred HHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 003047 94 SEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY 173 (854)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~ 173 (854)
+..... . ..-++|+-+..++|+|.+|..+|+|++|+.+|++++
T Consensus 378 L~i~~~--~-----------------------------------lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 378 VDGYMK--L-----------------------------------YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHH--H-----------------------------------SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--H-----------------------------------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432100 0 122489999999999999999999999999999999
Q ss_pred hccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 174 QNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 174 ~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
++.+.. +-..-..+.-++..++..+++|++|..+|.+...+..-+++
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 876543 11223345566779999999999999887766654433333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=104.52 Aligned_cols=103 Identities=5% Similarity=0.050 Sum_probs=84.4
Q ss_pred HhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 369 ARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
..|+|++|+..|++++.. .+| ..+..++|||.+|..+|+|++|+.+|+++|.+.......+ .+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--------Hp~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY--------SLN 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS--------CHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC--------ChH
Confidence 468899999999999973 234 3567899999999999999999999999999854432111 233
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-----CCCHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVF-----YKQPLLW 480 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-----P~~~~aw 480 (854)
-+..++|||.+|..+|++++|+.+|++|+++. |++|.+-
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 46789999999999999999999999999976 7777653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-07 Score=79.82 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL-ITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~-~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
.++|.++...|++++|+.+|++++.. .+.... +++++|.+|...|++++|+.+|++++.++|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT----------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999998 344567 9999999999999999999999999999999
Q ss_pred CHHHH--HHHHHHHH
Q 003047 476 QPLLW--LRLAECCL 488 (854)
Q Consensus 476 ~~~aw--~~La~~~i 488 (854)
++.+| ..++++..
T Consensus 68 ~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 68 SPALQARKMVMDILN 82 (99)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 99998 55555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=99.76 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 365 QLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-+..+|+|++|++.|++++.. .+| .....++|||.+|..+|+|++|+.+++++|.+....-..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~------- 366 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINI-YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS------- 366 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------
Confidence 4456789999999999999973 233 3467889999999999999999999999999854432111
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-----CCCHHH---HHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-----YKQPLL---WLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-----P~~~~a---w~~La~~~i 488 (854)
.|.....++|||.+|..+|++++|+.+|++|+++. |++|.+ ..+|++|..
T Consensus 367 -Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 367 -HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23346789999999999999999999999999876 777765 566777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.5e-06 Score=89.66 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHH----HHHH----HHHH--hhhccCCCcc
Q 003047 326 YKVRFLLLTR---NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHR----KAIK----LLLA--LSNRTEMGIS 392 (854)
Q Consensus 326 ~K~~lyl~~~---~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~----kAl~----~l~k--al~~~dp~~~ 392 (854)
.+++-|+..+ .+.+|+..++++++++ |++..++-.++..|.....+. ..+. .+.. .+. .+| ..
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-~~~-~~ 276 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-ELN-NL 276 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc-cCC-cC
Confidence 4566666654 4578999999999999 999999998888876322211 1111 1111 112 456 36
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.++..++..+...|++++|+.++++|+.+ ++....|.-+|.++...|++++|++.|.+|+.+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----------------n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDL-----------------EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 788888999999899999999999999998 234677788899999999999999999999999
Q ss_pred cCCCHH
Q 003047 473 FYKQPL 478 (854)
Q Consensus 473 ~P~~~~ 478 (854)
+|..+.
T Consensus 340 ~P~~~t 345 (372)
T 3ly7_A 340 RPGANT 345 (372)
T ss_dssp SCSHHH
T ss_pred CCCcCh
Confidence 998764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.8e-06 Score=73.67 Aligned_cols=83 Identities=14% Similarity=-0.015 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.-.+.||.+++.+|+|..|+.+|++|+.....-. . .......+++++|.++..+|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--I-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--C-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--C-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34566799999999999999999999999732110 0 02346789999999999999999999999999999
Q ss_pred cCCCHHHHHHHH
Q 003047 473 FYKQPLLWLRLA 484 (854)
Q Consensus 473 ~P~~~~aw~~La 484 (854)
.|+++.+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 999999999988
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0013 Score=75.77 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=68.5
Q ss_pred Ccchhh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 18 EDDSGV-LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 18 ~~~~~~-~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
|..-|. ...+..++..++..|-.|+++.+..+|++++..-| +.++|..-. .|..+............ ..++..
T Consensus 4 e~~~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~--~f~~~~~~~~~~i~~~f---e~al~~ 77 (493)
T 2uy1_A 4 EEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYI--EYVRKVSQKKFKLYEVY---EFTLGQ 77 (493)
T ss_dssp --------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHH--HHHHHHC----CTHHHH---HHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHH--HHHHHhCchHHHHHHHH---HHHHHH
Confidence 344564 67899999999999999999999999999999888 888887655 44443211111111121 222210
Q ss_pred HHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHH----HhhcHHHHHHHHHHh
Q 003047 97 LARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWF----HLHEYAKALSVLEPL 172 (854)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~----~~~~y~~A~~~~e~l 172 (854)
+ . .|+.+...|......+. .+++.+.+-++|+++
T Consensus 78 v-----------------------------------------g-~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA 115 (493)
T 2uy1_A 78 F-----------------------------------------E-NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA 115 (493)
T ss_dssp S-----------------------------------------T-TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred c-----------------------------------------C-CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 0 0 03445557765555543 468899999999999
Q ss_pred hh
Q 003047 173 YQ 174 (854)
Q Consensus 173 ~~ 174 (854)
+.
T Consensus 116 L~ 117 (493)
T 2uy1_A 116 LQ 117 (493)
T ss_dssp HT
T ss_pred Hh
Confidence 99
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=76.33 Aligned_cols=93 Identities=19% Similarity=0.040 Sum_probs=81.8
Q ss_pred hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHH
Q 003047 370 RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNC 449 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nL 449 (854)
.+++++|+++|+++....+| .+. ||.+|...+..++|+.+|++|... .++.+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~------------------g~~~a~~~L 63 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM----FGC--LSLVSNSQINKQKLFQYLSKACEL------------------NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT----THH--HHHHTCTTSCHHHHHHHHHHHHHT------------------TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH----hhh--HHHHHHcCCCHHHHHHHHHHHHcC------------------CCHHHHHHH
Confidence 46899999999999983333 233 999999999999999999999986 256899999
Q ss_pred HHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 450 GLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 450 G~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+|.. .+++++|+++|+++.+. +++.++++||.++.
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 999999 89999999999999987 88999999999988
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=5.8e-06 Score=93.96 Aligned_cols=118 Identities=5% Similarity=-0.144 Sum_probs=92.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcC---CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIAR---GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMF 395 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~---~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~ 395 (854)
.-+..+|++++|++.+++++.+.. ||+++ ..+..+|.+|..+|+|++|+.++++++.. ..| ..+..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHH
Confidence 335568999999999999998753 46665 45678999999999999999999999973 355 45788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 396 NNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 396 ~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
++|||.+|..+|++++|+.+|+||+.+.... +.+ .|...+++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~---------Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE---------HSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995432 211 122345667777776543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=9.3e-06 Score=92.34 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDK-----KPDDP---KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-----~~~~~---~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
.+.....+.......|+|++|+.+|+++|++ .|+++ .+++|||.+|..++++. +++...++++...
T Consensus 297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~------eA~~~~~~aL~i~ 370 (433)
T 3qww_A 297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE------GALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH------HHHHHHHHHHHHH
Confidence 3444444555555678999999999999985 66775 66899999998776544 4555555555321
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 98 ARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
.. . ..-++|+.+..++|+|.+|.++|+|++|+++|++++++++
T Consensus 371 ~~--~-----------------------------------lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 371 SK--H-----------------------------------YPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HH--H-----------------------------------SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH--H-----------------------------------cCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 10 0 1224899999999999999999999999999999999654
Q ss_pred C
Q 003047 178 P 178 (854)
Q Consensus 178 ~ 178 (854)
.
T Consensus 414 ~ 414 (433)
T 3qww_A 414 V 414 (433)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.1e-05 Score=74.20 Aligned_cols=100 Identities=7% Similarity=-0.124 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhcccCCccccccccCC-ccHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA---KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~ 447 (854)
...++.+.|.+.+. .+| ....+.+++|+++.+.+ +..+++.+|++.+... .| .+.+++|
T Consensus 13 ~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---------------~p~~~rd~lY 75 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---------------SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------------CccchHHHHH
Confidence 34566777777776 455 35778899999999988 5669999999999972 02 3568999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++|..++++|+|++|.++++++|+++|++..+..-+-.+--
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999888665554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-05 Score=67.99 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 354 KDSSLALFLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
|+++..++.+|.+++..++ .++|..++++++. .+|. ++.++..+|.++++.|+|++|+.+|++++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-LEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888888876665 6888888888888 7884 57788888888888888888888888888873
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00029 Score=77.79 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---C-CHHH
Q 003047 341 KREVKLAMNIARGKDSSLAL--FLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---A-KYHT 411 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~--~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---g-~~~e 411 (854)
..+.+++.... |.++.+| ++.|..++..+. +.+|+.+|+++++ .+|+ .+.++-.++.+|.-. + ....
T Consensus 180 ~~e~~r~~~~~--p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-lDP~-~a~A~A~la~a~~~~~~~~~~~~~ 255 (372)
T 3ly7_A 180 QRMQETLQKIL--PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-SSPE-FTYARAEKALVDIVRHSQHPLDEK 255 (372)
T ss_dssp HHHHHHHHHHS--CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHhccC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHhccCCCchh
Confidence 34566677777 9988776 788988887654 5899999999999 7995 688888888877521 1 1122
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+.-..+++.....+.. .+..+.++.-++.+++..|++++|+..+++|+.++|+ ..+|.-+|.++.
T Consensus 256 ~~~~l~~a~~a~~a~~~----------~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPE----------LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp HHHHHHHHHHHHHTCGG----------GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc----------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 22333444432111110 2345677777888899999999999999999999975 667777787766
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=66.12 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc--C---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRT--E---MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~--d---p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
++.-.+.+|..++..|+|.+|+..|+.++... + ....+.++.+||.+|+++|++++|+.++++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 45667899999999999999999999999841 1 1135788999999999999999999999999998
Q ss_pred ccccccccCCccHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG 450 (854)
.|.+..+..|++
T Consensus 76 --------~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 --------DPEHQRANGNLK 87 (104)
T ss_dssp --------CTTCHHHHHHHH
T ss_pred --------CCCCHHHHhhHH
Confidence 344556677766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=70.70 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccC-CCccHHHHHHHHHHHHHcCCHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR---NHRKAIKLLLALSNRTE-MGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~d-p~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
+..+.+++.+.+..+ |.+..+.|..|..+...+ +.++++.+|+.+++ .+ |....+++++||..|.++|+|++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445667778888888 999999999999999977 77799999999999 56 634578899999999999999999
Q ss_pred HHHHHHHHHh
Q 003047 413 SVFLSKALSN 422 (854)
Q Consensus 413 i~~f~kAL~~ 422 (854)
..|++++|++
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999999
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=64.19 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 777 RGTLYVNIAAMFAMQGE---FERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~---~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
++..++.+|.++...++ .++|..++++||+++|+++.++++++.++++.|++++|+..+++ ....|.+|+-
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 57888999999988766 79999999999999999999999999999999999999999999 5555556653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.43 E-value=0.067 Score=61.45 Aligned_cols=84 Identities=6% Similarity=-0.119 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHH----HcC
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLLALSNR--TEMGISSMFNNNLGCIYY----QLA 407 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~----~~g 407 (854)
++++.+..-+++++... | +...|..-.......+. .++....|+.++.. .+|. ...+|......+. ..+
T Consensus 28 ~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~-s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD-SYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT-CHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhchhhhH
Confidence 89999999999999988 8 77777666666655553 45667788888763 2553 4677765544433 346
Q ss_pred CHHHHHHHHHHHHHh
Q 003047 408 KYHTSSVFLSKALSN 422 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~ 422 (854)
+.+.+-..|++||..
T Consensus 104 ~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 104 RIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 788899999999985
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00084 Score=71.60 Aligned_cols=107 Identities=7% Similarity=-0.087 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHH-----hc------CHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 003047 354 KDSSLALFLKSQLEYA-----RR------NHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQL-----AKYHTSSVFL 416 (854)
Q Consensus 354 P~~~~a~~lla~ly~~-----~g------~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~~-----g~~~eAi~~f 416 (854)
|+++++++-.|.++.. .| ...+|...++++++ .+|. ....+|..||.+|... |+.++|..+|
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 9999998877777643 12 36799999999999 7885 1356899999999996 9999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCC
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|||++.++ .+...++..|..|... |++++|.+++++++...|..
T Consensus 228 erAL~LnP~---------------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSA---------------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCT---------------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCC---------------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999321 1256677779999885 99999999999999998874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00056 Score=72.95 Aligned_cols=85 Identities=12% Similarity=-0.019 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-cC
Q 003047 336 NLKHAKREVKLAMNIARGKD--SSLALFLKSQLEYAR-----RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-LA 407 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~--~~~a~~lla~ly~~~-----g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-~g 407 (854)
..+.|+..++++++++ |+ +..+|..+|.+|... |+.++|.++|++++. ..|+.+..+++..|..++. +|
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcC
Confidence 4577999999999999 99 677999999999994 999999999999999 7885447788889999988 59
Q ss_pred CHHHHHHHHHHHHHhc
Q 003047 408 KYHTSSVFLSKALSNS 423 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~ 423 (854)
++++|..++++||...
T Consensus 255 d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 255 NRAGFDEALDRALAID 270 (301)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCC
Confidence 9999999999999983
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.048 Score=62.83 Aligned_cols=130 Identities=5% Similarity=-0.128 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
.+++|.+-++........| |...+..+-..|...|+.++|+++|++.... ..| +...|+.|-..|.+.|+.++|.+
T Consensus 85 ~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP--RLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ccceehHHHHHHHHCCCHHHHHH
Confidence 3455666666666655324 5566677778899999999999999998874 456 36789999999999999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hcCCCHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL--VFYKQPLLWLRLA 484 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~--l~P~~~~aw~~La 484 (854)
.|++.... . ..++..+|..+-.+|.+.|+.++|++.|++.-+ +.|+.. .+..+-
T Consensus 162 l~~~M~~~----G-----------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~-T~~~l~ 217 (501)
T 4g26_A 162 VDAHMVES----E-----------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS-TFDMIE 217 (501)
T ss_dssp HHHHHHHT----T-----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH-HHHHHH
T ss_pred HHHHHHhc----C-----------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH-HHHHHH
Confidence 99998765 1 235677888889999999999999999998765 445533 343333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0083 Score=56.06 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhchhcccCCccccccccCC-ccHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT---SSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e---Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~ 447 (854)
....+.+.|.+.+. .++ ....+-+++++++....+... +|..++..+... .| .+-+.+|
T Consensus 16 ~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---------------~p~~~Rd~lY 78 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---------------SKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------------CcchHHHHHH
Confidence 34455555555554 233 245667778887777776655 777777666541 01 2457888
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
.+|..++++|+|++|..+++..|++.|+|..+..-.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 899999999999999999999999999987765433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.007 Score=59.08 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG-----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~-----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
.+++....-.+..|.|+-|+-....++.. .+|+ ....++..+|..++..++|..|+.+|++||+....+....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555566677778888888888886653 2231 2234667799999999999999999999999844332111
Q ss_pred ----ccc-----cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 431 ----PLK-----LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 431 ----~l~-----~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
... ........+.++-|.++.||..+|++++|+..++. |...-..|++..-||..|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence 000 00111233568889999999999999999998765 445556677777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.096 Score=60.29 Aligned_cols=92 Identities=9% Similarity=-0.138 Sum_probs=75.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHc
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~ 406 (854)
...|...|++++|.+-++........| +...+..+=..|...|+.++|.++|.+.... ..| +...|+.|-..|.+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhC
Confidence 345678899999999999988875325 4555566667789999999999999999874 456 367899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 003047 407 AKYHTSSVFLSKALSN 422 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~ 422 (854)
|+.++|...|++.-..
T Consensus 189 g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL 204 (501)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999996654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.028 Score=52.48 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHhhhccC-CCccHHHHHHHHHHHHHcCCHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRK---AIKLLLALSNRTE-MGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~k---Al~~l~kal~~~d-p~~~a~~~nnLG~iy~~~g~~~e 411 (854)
.+..+.+++.+.+..+ +....+.|..|..+....+... +|.+++.+++ .+ |......++.||..|+++|+|++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 4455667777777878 9999999999999997776666 9999999999 45 53456788889999999999999
Q ss_pred HHHHHHHHHHhc
Q 003047 412 SSVFLSKALSNS 423 (854)
Q Consensus 412 Ai~~f~kAL~~~ 423 (854)
|..+++..|++.
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999983
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.34 Score=53.94 Aligned_cols=132 Identities=15% Similarity=0.049 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-----cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNR-----TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~-----~dp 389 (854)
++..+....+.+|+..|++.+|.+.++++...-...++ .+.+.+-..+|...+|+.++-..|.++... .+|
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 46667778899999999999999999998886521223 355677899999999999999999998763 233
Q ss_pred CccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 390 GISSMFNNNLGCIYY-QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~-~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
...+.+...-|.+|. ..++|.+|..+|-+++....... .+....++..++.|-+..+...+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-----------~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-----------SVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-----------HHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-----------cHHHHHHHHHHHHHHHHcCCHHH
Confidence 222333334488999 89999999999999987532111 11223444557788888777433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.013 Score=57.26 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=81.4
Q ss_pred hhhhHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 003047 21 SGVLSVTA--TLAKEAALYFQSRKFDECLDLLKQLLDKKPDD---------PKILHNIAIAEYFRDGCTDPKKLLEALNN 89 (854)
Q Consensus 21 ~~~~~~~~--~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~---------~~~l~nla~~~~~~~~~~~~~~~~~~l~~ 89 (854)
||..+... .|+.+.-..+..|.|+.|+-+...++....++ .+++..+|.+.|..+.|.. +...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrr------A~~~ 85 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRN------AVSK 85 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHH------HHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHH------HHHH
Confidence 44444433 47788889999999999999999988763332 3578888988887765444 5555
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHH
Q 003047 90 VKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVL 169 (854)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~ 169 (854)
++++++..... .+.+.+ . .+.+ ..++++.+ .+.+......|.+|.+|..++++.+|+.++
T Consensus 86 y~qALq~~k~l-~k~~s~-------~--~~~~-~~ss~p~s---------~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 86 YTMALQQKKAL-SKTSKV-------R--PSTG-NSASTPQS---------QCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHHHHHHHCC----------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCc-------c--cccc-ccCCCccc---------ccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 55554322100 011110 0 0000 00011100 111224568899999999999999999999
Q ss_pred HHhhhccCCCchhhHHHHHHHHHHHH
Q 003047 170 EPLYQNIEPIDETTALQICLLLLDVA 195 (854)
Q Consensus 170 e~l~~~~~~~~e~~~~~~~l~l~~vy 195 (854)
|.+=...+. -++.++|+.+|
T Consensus 146 e~Ip~k~Rt------~kvnm~LakLy 165 (167)
T 3ffl_A 146 DGIPSRQRT------PKINMLLANLY 165 (167)
T ss_dssp HTSCGGGCC------HHHHHHHHHHC
T ss_pred hcCCchhcC------HHHHHHHHHHh
Confidence 776442222 14677787776
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.31 Score=46.31 Aligned_cols=76 Identities=8% Similarity=-0.055 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.+..-+++++++.+..+. .++|..++..+...+ ..+-+.+|.++..++++|+|++|..+.+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---------------~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---------------SRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---------------STHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---------------cchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467778898888877665 468888888777511 13457889999999999999999999999
Q ss_pred HHHhcCCCHHHHHH
Q 003047 469 SSLVFYKQPLLWLR 482 (854)
Q Consensus 469 AL~l~P~~~~aw~~ 482 (854)
.|++.|+|..+..-
T Consensus 103 lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 103 LFEHERNNKQVGAL 116 (144)
T ss_dssp HHHTCCCCHHHHHH
T ss_pred HHhcCCCcHHHHHH
Confidence 99999999776433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.28 Score=46.08 Aligned_cols=87 Identities=7% Similarity=-0.041 Sum_probs=63.9
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
.+.|++-+. ..| .+.+-+++++++.+..+. .++|..++..+...+ ..+-+.+|.++..+
T Consensus 27 ~~qy~~E~~-~~v--s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---------------~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 27 RQQVVSEGG-PTA--TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---------------SRRRECLYYLTIGC 88 (134)
T ss_dssp HHHHHHTTG-GGS--CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---------------chhHHHHHHHHHHH
Confidence 344444323 455 356777788877766654 478888888777521 12467889999999
Q ss_pred HHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 454 LACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 454 l~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.++|+|++|..+.+..|++.|+|..+..
T Consensus 89 yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 89 YKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999999999987643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.25 E-value=5.6 Score=44.14 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=97.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 003047 19 DDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP-----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNK 93 (854)
Q Consensus 19 ~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~-----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (854)
|+.++..+=+.+..-|-.+...|++++-.+++..+...-+.-+ ++--+| +.++..--.. ....++-+.+.
T Consensus 11 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l--~~~~~~~~~~---~~~~~~~~~~~ 85 (394)
T 3txn_A 11 DEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSL--VDMFLDMDAG---TGIEVQLCKDC 85 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHH--HHHHTTSCCC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHhcCCCc---HHHHHHHHHHH
Confidence 3345666777888899999999999999999998877544332 323222 2333321111 11222223333
Q ss_pred HHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 003047 94 SEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY 173 (854)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~ 173 (854)
++- + ..+ .. ..+ ..-+-..+|.+|+..|+|.+|++++.++.
T Consensus 86 ~~~-a--~~~-~r-------------------------------~fl----r~~l~~kL~~l~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 86 IEW-A--KQE-KR-------------------------------TFL----RQSLEARLIALYFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHH-H--HHT-TC-------------------------------HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-H--HHH-HH-------------------------------HHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 0 000 00 000 00122367999999999999999999999
Q ss_pred hccCCCchh-hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhc
Q 003047 174 QNIEPIDET-TALQICLLLLDVALACHDAFRSADVLIYLEKAFSV 217 (854)
Q Consensus 174 ~~~~~~~e~-~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~ 217 (854)
+....+|+. ....++++-+.+|..++++.++-. .|.++..+
T Consensus 127 ~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~---~l~~a~~~ 168 (394)
T 3txn_A 127 RELKKLDDKNLLVEVQLLESKTYHALSNLPKARA---ALTSARTT 168 (394)
T ss_dssp HHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHHHhccHHHHHH---HHHHHHhh
Confidence 988888877 477788889999999999999974 45555443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.10 E-value=1.2 Score=43.59 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNR----------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
-..+.+-.+..|....+|++|+.++++++.. .+|.+...+++.+|.+..+.|..++||.+|...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 4567777888888888888888888888841 145566677777899999999999999999999
Q ss_pred HHhch------hc--cc---------------CCccc---------c------ccc-----cCCc-cHHHHHHHHHHHHH
Q 003047 420 LSNSA------SL--RK---------------DKPLK---------L------LTF-----SQDK-SLLITYNCGLQYLA 455 (854)
Q Consensus 420 L~~~~------~l--~~---------------~~~l~---------~------~~~-----~~~~-~~~~~~nLG~~ll~ 455 (854)
+...+ .+ .+ ...++ + ..+ -.|. -....-+.+..|+.
T Consensus 141 f~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~ 220 (242)
T 3kae_A 141 FGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFN 220 (242)
T ss_dssp HHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHH
T ss_pred cCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 88621 00 00 00000 0 000 0111 12233467888999
Q ss_pred CCCcHHHHHHHHHHHHhcCCC
Q 003047 456 CGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|-.++...||...-..+|..
T Consensus 221 lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 221 LGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp TTCHHHHHHHHHHHHHHSTTT
T ss_pred cccchhHHHHHHHHHhcCCCc
Confidence 999999999999998888863
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.6 Score=45.57 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc--
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP-- 431 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~-- 431 (854)
|..+++..+++..++-.|.|..|+-++.+... ....| --..||.++++|.+|+.++++.|.-.. ..++
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT------~Ts~Y-Yk~LCy~klKdYkkA~~~le~il~~kv---d~d~~~ 99 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKLNT------CTSKY-YESLCYKKKKDYKKAIKSLESILEGKV---ERDPDV 99 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTCCB------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCS---BCCCCC
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhcch------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc---ccCccc
Confidence 77778999999999999999999988765322 23333 378899999999999999999996411 1111
Q ss_pred -cccc-cccCCccHHHHH-HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 432 -LKLL-TFSQDKSLLITY-NCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 432 -l~~~-~~~~~~~~~~~~-nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+.+. .+..+.+.+.++ .+|..+-+.|.-+||+.+|.....++|=.+.+
T Consensus 100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 1111 112233444444 56999999999999999999999999986654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=3.1 Score=46.95 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---c--CC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNR---T--EM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~--dp 389 (854)
-+.++...-+.+|...|++.+|.+.+..+...--+..+ .+.++....+++..+++.+|..++.++... . .|
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 45677888899999999999999999887543211222 467788999999999999999999997542 1 22
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.....++..+|.+|...++|.+|..+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 233456667899999999999999999999986
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.7 Score=44.39 Aligned_cols=109 Identities=8% Similarity=-0.081 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHhcCH------HHHHHHHHHhhhccCCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 354 KDSSLALFLKSQLEYARRNH------RKAIKLLLALSNRTEMG------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~------~kAl~~l~kal~~~dp~------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
|++++.|+.-....-..|+. ++-+++|++++....|. .-...|...+ .+...++.++|-..|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 99999999988888888999 89999999999832221 1133344334 44677999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+. ...+.+|...+..-.++|+...|...+.+++.+.|.....
T Consensus 89 ~h----------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NC----------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HC----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred Hh----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 72 2347788888999999999999999999999999986553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.49 E-value=4.8 Score=39.57 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=73.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
|+.+.+..|+++.|.+..+.+ ++..-|-.+|..-+..|+++-|.++|.++-. . -.+-.+|...
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~----~~L~~Ly~~t 73 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------F----DKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------H----HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------H----HHHHHHHHHh
Confidence 667788899999999876644 3557899999999999999999999998633 1 2244667778
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|+.+.-.+.-+.|... .+ +.-...+++.+|+++++++.|.+
T Consensus 74 g~~e~L~kla~iA~~~------------------g~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTR------------------ED---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp TCHHHHHHHHHHHHHT------------------TC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC------------------cc---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8865544433333332 11 22235667888888888888765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.42 E-value=0.98 Score=42.35 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 356 SSLALFLKSQLEYARR---NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+.+.|..|..+.... +..++|.+++.+++ .+|......++.|+..|+++|+|++|..+.+..|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566666666666443 34578888888777 556444666777888888888888888888888887
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.11 E-value=3.9 Score=42.87 Aligned_cols=130 Identities=6% Similarity=-0.115 Sum_probs=91.3
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
-.+..+++++|++.++..+... |.|......+-++++-.|++++|.+.++-+.+ .+|...+ ++..|.. .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-l~p~~~~-----~a~~yr~---l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYLP-----GASQLRH---L 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGHH-----HHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCchhhH-----HHHHHHH---H
Confidence 3567899999999999999999 99999999999999999999999999999999 7884322 2223321 1
Q ss_pred HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 410 HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
-.|...=.+.+.- ... +..+..++......--++.....|+.++|.+.-.++++..|..+-
T Consensus 75 I~aE~~R~~vfaG-----~~~---P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 75 VKAAQARKDFAQG-----AAT---AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHHHHTTS-----CCC---EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHHHcC-----CCC---CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 2222221222221 000 111112333344445688888899999999999999999887654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.99 E-value=1 Score=50.50 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
..++..+|.+|+..|++++|+++|.++... ..+.....++..+-.++...+++..+..++.|+-.....-. +
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~--d----- 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG--D----- 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--C-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--C-----
Confidence 347789999999999999999999998874 23344567777778888899999999999999977632110 0
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.........-.|..++..++|.+|..+|..++.-+...
T Consensus 204 ---~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 204 ---WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp ---THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 01112233445889999999999999999988766443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.42 E-value=2.6 Score=39.99 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 354 KDSSLALFLKSQLEYARR---NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+-.+...|..|..+.... +..+++.+++.+++ ..|......++.|+..|+++|+|++|..|.+..|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345677777777777554 44578899998888 666555677777999999999999999999999988
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.38 E-value=1.5 Score=52.73 Aligned_cols=117 Identities=10% Similarity=-0.076 Sum_probs=81.3
Q ss_pred hcC-HHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCc---------cHH
Q 003047 334 TRN-LKHAKREVKLAMNIARGKDSSLALF--LKSQLEYARRNHRKAIKLLLALSNR-------TEMGI---------SSM 394 (854)
Q Consensus 334 ~~~-~~~A~~elk~al~~~~~P~~~~a~~--lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~---------~a~ 394 (854)
.++ .+.|+..++++...+ |.....+. .++.+.....+--+|+.++.+.++. ..+.. ...
T Consensus 261 t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 344 577899999999998 86654332 2222223344566788888777641 11111 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.++--+..+...|+|+.|+++=++|... .|.....|+.|+.+|..+|+|+.|+-.++-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----------------aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTEL----------------ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhc----------------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3333367777899999999999999998 455679999999999999999999976443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=6.1 Score=43.51 Aligned_cols=122 Identities=13% Similarity=-0.027 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh--hhhhHhhhhhhhhccCCCCCCCCCCCCCC
Q 003047 688 CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC--EQWRVEKIIDCEELNGGPAAAKNPSPEDS 765 (854)
Q Consensus 688 ~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~p 765 (854)
..+...|...+-.+......|++++|+..|+.++. += .+--..+. ..|.......
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~--L~--rG~~L~~~~~~~w~~~~r~~------------------- 165 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALR--EW--RGPVLDDLRDFQFVEPFATA------------------- 165 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC--CSSTTGGGTTSTTHHHHHHH-------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hc--CCCCCCCCCchhHHHHHHHH-------------------
Confidence 34677777666666666677999999999999993 10 00000111 1122110000
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
..+....+...++..+...|++++|...++++++..|-+-.++..++..+.+.|+..+|++.+++.+
T Consensus 166 -------l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 166 -------LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0111344555678888899999999999999999999998888888888899999999999998843
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=88.84 E-value=3.1 Score=49.35 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=27.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
.+.+..|+++.|.+..+ . .++...|-.+|..+...++++.|+++|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~-----~--~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT-----D--ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT-----T--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH-----h--hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666666655432 1 344556666666666666666666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=3 Score=46.02 Aligned_cols=97 Identities=19% Similarity=0.080 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC------CC--------------HHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK------DS--------------SLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P------~~--------------~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+-+++-....++.+.|.+.+..++.+.+|| .. ..+...++..+...|++.+|+..+..++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455556789999999999999998764 21 1233456788889999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
. .+| ....++-.+-.+|...|+..+|+..|++.-..+
T Consensus 199 ~-~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 199 F-EHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp H-HST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred H-hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9 789 467788888999999999999999999987753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.40 E-value=8.1 Score=37.95 Aligned_cols=48 Identities=21% Similarity=0.056 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 665 VELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
..+++|++..|.+.++++ +....|+.||...+ ..|+++=|..||.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL-----~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEAL-----AQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHH-----HTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHH-----HcCChHHHHHHHHHhC
Confidence 478999999999999887 56789999988544 6799999999998865
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.57 E-value=1.9 Score=49.35 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
.+..||++.+-...+..|..||.+|+.+. |.....++.||......|+.-+|+-+|.+++....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----------------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----------------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 56679999999999999999999999994 34457899999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHH
Q 003047 475 KQPLLWLRLAECCLM 489 (854)
Q Consensus 475 ~~~~aw~~La~~~i~ 489 (854)
-.+.++.+|...+-.
T Consensus 218 Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 899999999987764
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.33 E-value=2.1 Score=49.14 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+..+|++.-....++.|..+|.++.. ..|. ....||.||.++...|+.-+|+.+|-++|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~-~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ-LVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH-hCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 445567777777778888888888888 6774 5678888888888888888888888888876
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.91 E-value=5.1 Score=38.43 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhhcH------HHHHHHHHHhhhccCCC
Q 003047 143 FDVSVAKLNIAVIWFHLHEY------AKALSVLEPLYQNIEPI 179 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y------~~A~~~~e~l~~~~~~~ 179 (854)
|.+...|.+.....-..|+. ++-+++|++++.+++|-
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc
Confidence 34555676777776666777 77778888888877664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=85.53 E-value=3.5 Score=48.96 Aligned_cols=48 Identities=19% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 365 QLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
.+....|++++|+++.+.. + ....|.++|..+.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----~---~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----S---AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh----C---cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788999998875432 1 2568999999999999999999999986
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.32 E-value=57 Score=36.40 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC-chhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI-DETTALQICLLLLDVALACHDAFRSADVL 208 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~-~e~~~~~~~l~l~~vy~~~~~~~kA~~~l 208 (854)
+.+-+.....+|.+|...|+|.+|.+++..+....... +...-..+++....+|+..+++.+|..++
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~ 200 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLS 200 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566677788999999999999999999887643333 33345556777889999999999998544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.49 E-value=5.8 Score=50.12 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=87.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--c-------------------CC
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--T-------------------EM 389 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~-------------------dp 389 (854)
++..+..+-+. .++..- |.++..-|++|.+++..|++++|..+|+++-.- . ..
T Consensus 822 l~~~~~~~~~~----~l~~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACM----QLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHH----HHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHH----HHhhhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 44445554332 355666 889989999999999999999999999997431 0 01
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
..-+.+|..+..++.+.+.++.+++.-+.|++... .+. .+.....|.++=..++..|+|++|..++..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~----~~~-------~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE----TDD-------EDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC----SCC-------HHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc----CCC-------hhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 11245677788889999999999999999998621 100 001234788889999999999999988754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.78 E-value=3 Score=50.13 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+....+++++..|+++-|++..+++++.. |.+...|+.++.+|..+|+|+.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44456888899999999999999999999 9999999999999999999999998888764
|
| >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=81.03 E-value=13 Score=32.35 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 15 TSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
.|+..-......+..++.+|+..=..|+|++|+.+|.++++.
T Consensus 3 ~~~~~~~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 3 SGSSGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667889999999999999999999999999999883
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.68 E-value=13 Score=46.20 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
.+..+=+.|...|+.++|.++|...... ..| +...||.|-..|++.|+.++|.+.|++.... +
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G------- 195 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----G------- 195 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T-------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-------
Confidence 3445556778888888998888664321 356 3678888888888999999999888887664 1
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhc
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKP-VLAARCFQKSSLVF 473 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~-eeAl~~y~kAL~l~ 473 (854)
..++..+|..+=.++.+.|+. ++|.++|++.....
T Consensus 196 ----~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 196 ----LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ----CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 234566676677778888885 67888888877643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.18 E-value=7.4 Score=40.78 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=50.3
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
.+...|.+++|++.+...++ . .|. ++..+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~--------------------------------------~P~----------da~~R~ 35 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--A--------------------------------------SPK----------DASLRS 35 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--T--------------------------------------CTT----------CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--h--------------------------------------CCc----------CHHHHH
Confidence 46678999999999999994 1 143 577778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
-|-..+|..|+|++|.+.++.+..++|..
T Consensus 36 ~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 36 SFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 89999999999999999999999999976
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 854 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 8e-06
Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 16/221 (7%)
Query: 637 QNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIFL 695
+ + + + R+E +L L+ + + ++ + ++ P + Y L
Sbjct: 16 EAAERHCMQLWRQEPDNTG--VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 696 GHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755
G++Y +L + L P
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 756 AAKNPSPEDSRDTMFPKPEEAR-------------GTLYVNIAAMFAMQGEFERAHHFVT 802
S + + EEA+ + N+ +F QGE A H
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 803 QALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCNHVRF 843
+A+++ P +A + V A+A +
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 48/420 (11%), Positives = 96/420 (22%), Gaps = 51/420 (12%)
Query: 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG 457
L YQ + + + + + + + C
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ----------------EPDNTGVLLLLSSIHFQCR 47
Query: 458 KPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517
+ +A + + L + +
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDF 100
Query: 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKF 577
+ P L + L
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 578 GLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGT--SLEV 635
+ + + + S+ G L+ + +V L DA G +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARI 218
Query: 636 IQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSRIYIF 694
+++ Y + NLA V E A+ R +EL P Y
Sbjct: 219 FDRAVAAYLRALSLSPNHAV--VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 695 LGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGP 754
L + EA + ++ L + + + + G
Sbjct: 277 LANALKE-----KGSVAEAEDCYNTALRL----------CPTHADSLNNLANIKREQGNI 321
Query: 755 AAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEA 814
A R + PE A + N+A++ QG+ + A +A+ I P +A
Sbjct: 322 EEAV----RLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 4e-04
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNN 89
+ A +Q+ F+ QL ++PD+ +L ++ +F+ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCR--RLDRSAHFSTL 58
Query: 90 VKNKSEELARA 100
++ LA A
Sbjct: 59 AIKQNPLLAEA 69
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 854 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.74 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.74 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.33 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.32 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.05 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.01 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.97 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.71 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 81.11 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.22 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-30 Score=275.78 Aligned_cols=386 Identities=17% Similarity=0.109 Sum_probs=313.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
||..|..+|+.|+|++|++.|+++++.+|+++.+++++|.+++..+ ++.+++..+.++++.
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~------~~~~A~~~~~~al~~------------- 62 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR------RLDRSAHFSTLAIKQ------------- 62 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHh-------------
Confidence 4567889999999999999999999999999999999999988654 455677777777742
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+|+++.+|+++|.+|..+|+|++|++.++++....+...+ ...
T Consensus 63 --------------------------------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~ 105 (388)
T d1w3ba_ 63 --------------------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID-----GYI 105 (388)
T ss_dssp --------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHH
T ss_pred --------------------------------CCCCHHHHHHHHHHhhhhcccccccccccccccccccccc-----ccc
Confidence 5667889999999999999999999999999986544333 244
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
.....+.....+..+.... ....... ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~-------------------------------------------- 134 (388)
T d1w3ba_ 106 NLAAALVAAGDMEGAVQAY---VSALQYN----PDL-------------------------------------------- 134 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHH---HHHHHHC----TTC--------------------------------------------
T ss_pred ccccccccccccccccccc---ccccccc----ccc--------------------------------------------
Confidence 4555666666666665322 2111110 000
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
..............+....+...+.+.+.
T Consensus 135 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 135 ---------------------------------------------------YCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp ---------------------------------------------------THHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------ccccccccccccccchhhhhHHHHHHhhc
Confidence 00111234455567788888899999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 350 IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 350 ~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
.. |+++.++..+|..+...|++++|+.++++++. .+|. .+.++..+|.+|...|++++|+..|++++..
T Consensus 164 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 232 (388)
T d1w3ba_ 164 TQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-LDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL------- 232 (388)
T ss_dssp HC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------
T ss_pred cC--cchhHHHHhhcccccccCcHHHHHHHHHHHHH-hCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHH-------
Confidence 99 99999999999999999999999999999999 7884 6789999999999999999999999999997
Q ss_pred CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccc
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVK 509 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~ 509 (854)
.+.....++++|.++...|++++|+.+|+++++++|+++.+|..+|.++.. .+
T Consensus 233 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~--------------- 285 (388)
T d1w3ba_ 233 ---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE---KG--------------- 285 (388)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH---HS---------------
T ss_pred ---------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cC---------------
Confidence 344578899999999999999999999999999999999999999999882 10
Q ss_pred eeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccc
Q 003047 510 VHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESE 589 (854)
Q Consensus 510 ~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~ 589 (854)
....|..+|+.++...|...
T Consensus 286 ------------------------------------------~~~~A~~~~~~~~~~~~~~~------------------ 305 (388)
T d1w3ba_ 286 ------------------------------------------SVAEAEDCYNTALRLCPTHA------------------ 305 (388)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHCTTCH------------------
T ss_pred ------------------------------------------CHHHHHHHHHhhhccCCccc------------------
Confidence 23669999999998887743
Q ss_pred cccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHc
Q 003047 590 SSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEM 669 (854)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~l 669 (854)
.++..++.++..+
T Consensus 306 -------------------------------------------------------------------~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 306 -------------------------------------------------------------------DSLNNLANIKREQ 318 (388)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHTT
T ss_pred -------------------------------------------------------------------hhhhHHHHHHHHC
Confidence 1245668899999
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
|++.+|+.+++++++ .|+++.++..+|.+ +..+|++++|+.+|++++. .+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~-----~~~~g~~~~A~~~~~~al~--l~---------------------- 369 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASV-----LQQQGKLQEALMHYKEAIR--IS---------------------- 369 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHH-----HHTTTCCHHHHHHHHHHHT--TC----------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH--hC----------------------
Confidence 999999999999998 88899888888775 4579999999999999993 32
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCC
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGE 793 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~ 793 (854)
|. .+.+|++||.+|..+||
T Consensus 370 ----------------P~----------~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 ----------------PT----------FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ----------------TT----------CHHHHHHHHHHHHHTCC
T ss_pred ----------------CC----------CHHHHHHHHHHHHHcCC
Confidence 33 57889999999999986
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.8e-28 Score=257.83 Aligned_cols=359 Identities=16% Similarity=0.061 Sum_probs=299.2
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|++..+++++|.+|+.+|+|++|+++|+++++..+... .+++.++.+|...|++++|+. .++++....
T Consensus 29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~~l~~~~~~~g~~~~A~~---~~~~~~~~~--- 97 (388)
T d1w3ba_ 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA-----EAYSNLGNVYKERGQLQEAIE---HYRHALRLK--- 97 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHHH---HHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHhhhhcccccccc---ccccccccc---
Confidence 566788999999999999999999999999999654432 257889999999999999985 455554432
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
+.. .
T Consensus 98 -~~~------------------------------~--------------------------------------------- 101 (388)
T d1w3ba_ 98 -PDF------------------------------I--------------------------------------------- 101 (388)
T ss_dssp -TTC------------------------------H---------------------------------------------
T ss_pred -ccc------------------------------c---------------------------------------------
Confidence 000 0
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLL 381 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ 381 (854)
.........+........+........... +.........+......+....+...+.
T Consensus 102 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 102 --------------------DGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp --------------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --------------------cccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHH
Confidence 011112333444555566667777777777 8888999999999999999999999999
Q ss_pred HhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 382 ALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 382 kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
+.+. ..|. .+.++.++|.++...|++++|+.++++++.. .|....+++++|.++...|++++
T Consensus 160 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~ 221 (388)
T d1w3ba_ 160 KAIE-TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----------------DPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHH-HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCTTH
T ss_pred Hhhc-cCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHh----------------CcccHHHHHHHhhhhhccccHHH
Confidence 9999 7884 6789999999999999999999999999998 34567899999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCC
Q 003047 462 AARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDS 541 (854)
Q Consensus 462 Al~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~ 541 (854)
|+.+|++++.+.|..+..|..+|.++. +.+
T Consensus 222 A~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~----------------------------------------------- 251 (388)
T d1w3ba_ 222 AVAAYLRALSLSPNHAVVHGNLACVYY---EQG----------------------------------------------- 251 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---HTT-----------------------------------------------
T ss_pred HHHHHHHhHHHhhhHHHHHHHHHHHHH---HCC-----------------------------------------------
Confidence 999999999999999999999999887 210
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccC
Q 003047 542 SLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTAN 621 (854)
Q Consensus 542 ~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (854)
.++.|+.+|++|+.+.|+...
T Consensus 252 ----------~~~~A~~~~~~al~~~p~~~~------------------------------------------------- 272 (388)
T d1w3ba_ 252 ----------LIDLAIDTYRRAIELQPHFPD------------------------------------------------- 272 (388)
T ss_dssp ----------CHHHHHHHHHHHHHTCSSCHH-------------------------------------------------
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHH-------------------------------------------------
Confidence 247799999999999887431
Q ss_pred CCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHH
Q 003047 622 GDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYA 700 (854)
Q Consensus 622 gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~ 700 (854)
++..+|.++..+|++.+|+..+++++. .|..+..+..++.+|
T Consensus 273 ------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~- 315 (388)
T d1w3ba_ 273 ------------------------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK- 315 (388)
T ss_dssp ------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred ------------------------------------HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH-
Confidence 255778899999999999999999997 888888888777754
Q ss_pred HHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 003047 701 AEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTL 780 (854)
Q Consensus 701 aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~ 780 (854)
..+|++++|+.+|++++. .+ |. .+.+
T Consensus 316 ----~~~~~~~~A~~~~~~al~--~~--------------------------------------p~----------~~~~ 341 (388)
T d1w3ba_ 316 ----REQGNIEEAVRLYRKALE--VF--------------------------------------PE----------FAAA 341 (388)
T ss_dssp ----HTTTCHHHHHHHHHHHTT--SC--------------------------------------TT----------CHHH
T ss_pred ----HHCCCHHHHHHHHHHHHH--hC--------------------------------------CC----------CHHH
Confidence 579999999999999993 21 33 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 003047 781 YVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGK 827 (854)
Q Consensus 781 ~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~ 827 (854)
+++||.++..+|++++|+++|++|++++|+++.++..++.++.++||
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-21 Score=207.30 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003047 30 LAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGG 109 (854)
Q Consensus 30 l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (854)
.|.+|..++..|+|++|++.|+++++.+|+++.+++++|.+++..+ ++.+++..+.++++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~------~~~~A~~~~~~al~~------------- 82 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE------QELLAISALRRCLEL------------- 82 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------ChHHHHHHHHhhhcc-------------
Confidence 5789999999999999999999999999999999999998887554 355577777777741
Q ss_pred CCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHH
Q 003047 110 NIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICL 189 (854)
Q Consensus 110 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l 189 (854)
+|++...|+++|.+|..+|++++|+++|++++...+.......
T Consensus 83 --------------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----- 125 (323)
T d1fcha_ 83 --------------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT----- 125 (323)
T ss_dssp --------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred --------------------------------ccccccccccccccccccccccccccchhhHHHhccchHHHHH-----
Confidence 4667789999999999999999999999988875443222100
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
. ........
T Consensus 126 ----------~----------~~~~~~~~--------------------------------------------------- 134 (323)
T d1fcha_ 126 ----------P----------AEEGAGGA--------------------------------------------------- 134 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------h----------hhhhhhhc---------------------------------------------------
Confidence 0 00000000
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
+++... .....+...+.+.+|++.+++++.
T Consensus 135 ----------------------------------~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 135 ----------------------------------GLGPSK----------------RILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp --------------------------------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------ccccch----------------hhHHHHHHhhHHHHHHHHHHHHHH
Confidence 000000 000112234556778899999999
Q ss_pred hcCCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 350 IARGKDS--SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 350 ~~~~P~~--~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
++ |+. +.++..+|.++...|++++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++++
T Consensus 165 ~~--p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 235 (323)
T d1fcha_ 165 LD--PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL----- 235 (323)
T ss_dssp HS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred Hh--hcccccccchhhHHHHHHHHHHhhhhcccccccc-cccc-cccchhhhhhcccccccchhHHHHHHHHHHH-----
Confidence 99 874 67788999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.|....+|+++|.+|..+|++++|+.+|+++++++|++..++.
T Consensus 236 -----------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 236 -----------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred -----------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 3456789999999999999999999999999999999987543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.2e-21 Score=206.45 Aligned_cols=255 Identities=13% Similarity=-0.020 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
...+.+|..++..|++++|+++|+++++ .+|. ++.+|.++|.+|..+|++++|+.+|.+++.+
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------------- 82 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPK-HMEAWQYLGTTQAENEQELLAISALRRCLEL--------------- 82 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcc---------------
Confidence 4467899999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.|.....|+++|.+|...|++++|+++|++++.+.|+....+............ + .
T Consensus 83 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~--~ 138 (323)
T d1fcha_ 83 -KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL---------------------G--P 138 (323)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------
T ss_pred -ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhccc---------------------c--c
Confidence 345678999999999999999999999999999999876554333322110000 0 0
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.... . + ..........|..+|++|+.+.|.....
T Consensus 139 ~~~~----------~-----~-------~~~~~~~~~~a~~~~~~al~~~p~~~~~------------------------ 172 (323)
T d1fcha_ 139 SKRI----------L-----G-------SLLSDSLFLEVKELFLAAVRLDPTSIDP------------------------ 172 (323)
T ss_dssp --CT----------T-----H-------HHHHHHHHHHHHHHHHHHHHHSTTSCCH------------------------
T ss_pred chhh----------H-----H-------HHHHhhHHHHHHHHHHHHHHHhhccccc------------------------
Confidence 0000 0 0 0000123577999999999998874310
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALA 677 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~ 677 (854)
.++..+|.++...|++.+|+.
T Consensus 173 -----------------------------------------------------------~~~~~l~~~~~~~~~~~~A~~ 193 (323)
T d1fcha_ 173 -----------------------------------------------------------DVQCGLGVLFNLSGEYDKAVD 193 (323)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------------ccchhhHHHHHHHHHHhhhhc
Confidence 235677999999999999999
Q ss_pred HHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCC
Q 003047 678 AARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAA 756 (854)
Q Consensus 678 ~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 756 (854)
++++++. .|.++.++..+|.+| ..+|++++|+.++++++. .+
T Consensus 194 ~~~~al~~~p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al~--~~------------------------------ 236 (323)
T d1fcha_ 194 CFTAALSVRPNDYLLWNKLGATL-----ANGNQSEEAVAAYRRALE--LQ------------------------------ 236 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HC------------------------------
T ss_pred ccccccccccccccchhhhhhcc-----cccccchhHHHHHHHHHH--Hh------------------------------
Confidence 9999997 899999998888755 479999999999999993 11
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003047 757 AKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 757 ~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
|. .+.+|++||.+|..+|++++|+..|++|+++.|++..
T Consensus 237 --------p~----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 237 --------PG----------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp --------TT----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred --------hc----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 32 4778999999999999999999999999999998743
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.2e-17 Score=174.75 Aligned_cols=151 Identities=7% Similarity=-0.035 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhhhccCCCccHHH
Q 003047 317 VDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLLALSNRTEMGISSMF 395 (854)
Q Consensus 317 ~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~kal~~~dp~~~a~~ 395 (854)
.+|..... +.+.++...+..++|++.++++++++ |++..+|+.+|.++...|+ +++|++++++++. .+|. ...+
T Consensus 40 p~~~~a~~-~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~-~~p~-~~~a 114 (315)
T d2h6fa1 40 DKFRDVYD-YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPK-NYQV 114 (315)
T ss_dssp HHHHHHHH-HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTT-CHHH
T ss_pred HHHHHHHH-HHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHh-hhhH
Confidence 45554333 33667777777777877888888887 8888777777777777654 7777887777777 6773 5677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 396 NNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 396 ~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
|+++|.++..+|++++|+.+|++++.+ .|.+..+|+++|.++...|++++|+.+|+++++++|+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~----------------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~ 178 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQ----------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 178 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhh----------------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence 777777777777788888888887777 3445677777787777777777788888888888887
Q ss_pred CHHHHHHHHHHHH
Q 003047 476 QPLLWLRLAECCL 488 (854)
Q Consensus 476 ~~~aw~~La~~~i 488 (854)
+..+|.++|.++.
T Consensus 179 n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 179 NNSVWNQRYFVIS 191 (315)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 7777777776655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2e-15 Score=158.16 Aligned_cols=322 Identities=12% Similarity=0.000 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS-----SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-----~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp 389 (854)
.+..+...++++++..|++++|++.+++++... |++ ..++..+|.+++..|++++|++.|++++.. .++
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence 344567779999999999999999999999999 987 357888999999999999999999999873 111
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
......+.++|.+|...|++..|+..+.+++.+.+...... .......+..+|.++...|++++|..+|.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 159 (366)
T d1hz4a_ 88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ--------LPMHEFLVRIRAQLLWAWARLDEAEASARSG 159 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT--------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch--------hhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 13355677899999999999999999999999854322110 1123457778999999999999999999999
Q ss_pred HHhcCCCHHH-----HHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 470 SLVFYKQPLL-----WLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 470 L~l~P~~~~a-----w~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
+...+..... +..++.++. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------------------------------------- 185 (366)
T d1hz4a_ 160 IEVLSSYQPQQQLQCLAMLIQCSL---AR--------------------------------------------------- 185 (366)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHH---HH---------------------------------------------------
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHH---hh---------------------------------------------------
Confidence 9998865433 333333322 10
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
.....+...+..+..+.+......
T Consensus 186 ------~~~~~a~~~~~~a~~~~~~~~~~~-------------------------------------------------- 209 (366)
T d1hz4a_ 186 ------GDLDNARSQLNRLENLLGNGKYHS-------------------------------------------------- 209 (366)
T ss_dssp ------TCHHHHHHHHHHHHHHHTTSCCCH--------------------------------------------------
T ss_pred ------hhHHHHHHHHHHHHHHHHHhcccC--------------------------------------------------
Confidence 024668888888888877743200
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeA 703 (854)
.....++..++.++...|++..|...+++++. .+..... .......++.+
T Consensus 210 ----------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~la~~ 260 (366)
T d1hz4a_ 210 ----------------------------DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARA 260 (366)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-GHHHHHHHHHH
T ss_pred ----------------------------chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-HHHHHHHHHHH
Confidence 00013355678889999999999999999997 3332211 11122334556
Q ss_pred HHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 003047 704 LCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVN 783 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~N 783 (854)
+..+|++++|+.++++++.. . +.. ...+ ..+.++.+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~--~---------------~~~-------------------------~~~~--~~~~~~~~ 296 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNEN--A---------------RSL-------------------------RLMS--DLNRNLLL 296 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--H---------------HHT-------------------------TCHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--H---------------hhc-------------------------ccCh--HHHHHHHH
Confidence 77899999999999999831 0 000 0001 16788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHhcCCHHHHHH
Q 003047 784 IAAMFAMQGEFERAHHFVTQALSILPR---------STEATLTAIYVDLMLGKSQEALA 833 (854)
Q Consensus 784 La~~~~~~g~~e~A~~~~~~Al~~~P~---------~~~a~~l~~y~~L~~G~~~eA~~ 833 (854)
+|.+|..+|++++|.+++++|+++.+. .+..+......++..|+.+++..
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999999987542 23445555556677888777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.3e-17 Score=174.65 Aligned_cols=121 Identities=9% Similarity=-0.067 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhcccCCcc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK-YHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~-~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
|+..+++..+|.++...+++++|++++++++. .+|. +..+|+++|.++..+|+ +++|+.+|++++.+
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~-lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---------- 107 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---------- 107 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----------
Confidence 88888999999999999999999999999999 7994 68899999999999875 89999999999998
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.|....+|+++|.++..+|++++|+.+|.++++++|++..+|.++|.++...++
T Consensus 108 ------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~ 161 (315)
T d2h6fa1 108 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 161 (315)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred ------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999986544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=3.6e-15 Score=156.11 Aligned_cols=296 Identities=14% Similarity=0.025 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDKKPDD-----PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~-----~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
++-.+..|..++..|+|++|+++|+++++..|.+ ..+++++|.+++..++ +.+++..+.+++....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~------~~~A~~~~~~a~~~~~--- 82 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE------LTRSLALMQQTEQMAR--- 82 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHH---
Confidence 4455668999999999999999999999998886 4678999999987765 4446666666653210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
. ..+.+.....+++++.++...|++.+|+..+.+.+...+....
T Consensus 83 -~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~ 126 (366)
T d1hz4a_ 83 -Q-----------------------------------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 126 (366)
T ss_dssp -H-----------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -h-----------------------------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence 0 0124556778999999999999999999999998875433221
Q ss_pred ---hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhh
Q 003047 182 ---TTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAA 258 (854)
Q Consensus 182 ---~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (854)
.....+...++.+|...|++++|.. .++++........ ..
T Consensus 127 ~~~~~~~~~~~~la~~~~~~~~~~~a~~---~~~~~~~~~~~~~--------------------------------~~-- 169 (366)
T d1hz4a_ 127 EQLPMHEFLVRIRAQLLWAWARLDEAEA---SARSGIEVLSSYQ--------------------------------PQ-- 169 (366)
T ss_dssp TTSTHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHTTTSC--------------------------------GG--
T ss_pred chhhHHHHHHHHHHHHHHHhcchhhhHH---HHHHHHHHhhhhh--------------------------------hh--
Confidence 1223356668899999999999984 5566655431100 00
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHH
Q 003047 259 TVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLK 338 (854)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~ 338 (854)
...........++...+...
T Consensus 170 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 189 (366)
T d1hz4a_ 170 ------------------------------------------------------------QQLQCLAMLIQCSLARGDLD 189 (366)
T ss_dssp ------------------------------------------------------------GGHHHHHHHHHHHHHHTCHH
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHhhhhHH
Confidence 00011223456677788889
Q ss_pred HHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHHHHHHcCCHH
Q 003047 339 HAKREVKLAMNIARG-----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 339 ~A~~elk~al~~~~~-----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~iy~~~g~~~ 410 (854)
++...+..+...... |....++...|.++...|++++|...+.+++. ..|. .....+.++|.+|..+|+++
T Consensus 190 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~ 268 (366)
T d1hz4a_ 190 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFE 268 (366)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHcCCHH
Confidence 898888888887621 12245678899999999999999999999988 3332 33566778999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+|+.+|++++........ .+....+++++|.+|...|++++|+++|++++.+.+.
T Consensus 269 ~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 269 PAEIVLEELNENARSLRL----------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc----------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 999999999987443210 1234678999999999999999999999999998653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.3e-17 Score=174.51 Aligned_cols=283 Identities=11% Similarity=-0.046 Sum_probs=218.5
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHHHHhhhcccCC
Q 003047 32 KEAALYFQSRKF-DECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDP----KKLLEALNNVKNKSEELARATGEQTE 106 (854)
Q Consensus 32 ~~a~~~~~~g~y-~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (854)
.........|++ ++|+++++++++++|++..+|+..+.+.......... ..+.+++..+.+.++
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----------- 101 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----------- 101 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH-----------
Confidence 334445566665 8999999999999999999999888776655543332 234556666666553
Q ss_pred CCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhc--HHHHHHHHHHhhhccCCCchhhH
Q 003047 107 GGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHE--YAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~--y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
.+|++..+|+++|.++..+++ +++|+.++++++...+...+
T Consensus 102 ----------------------------------~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--- 144 (334)
T d1dcea1 102 ----------------------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--- 144 (334)
T ss_dssp ----------------------------------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---
T ss_pred ----------------------------------hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh---
Confidence 167788899999999888876 89999999999995443322
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
......+.++...+++++|+ .++++++.+. +..
T Consensus 145 -~~~~~~~~~~~~~~~~~~Al---~~~~~~i~~~----p~~--------------------------------------- 177 (334)
T d1dcea1 145 -CWDYRRFVAAQAAVAPAEEL---AFTDSLITRN----FSN--------------------------------------- 177 (334)
T ss_dssp -HHHHHHHHHHHTCCCHHHHH---HHHHTTTTTT----CCC---------------------------------------
T ss_pred -hhhhHHHHHHHhccccHHHH---HHHHHHHHcC----CCC---------------------------------------
Confidence 23556779999999999997 5778776553 110
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
.....+++.+|...|++++|...+
T Consensus 178 --------------------------------------------------------~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 178 --------------------------------------------------------YSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 012334566677788888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
++++.+. |.+...+ ..+...+..++|+..|.+++. .+|. ....+.++|.++...|++.+|+..|.+++..
T Consensus 202 ~~~~~~~--~~~~~~~----~~~~~l~~~~~a~~~~~~~l~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 271 (334)
T d1dcea1 202 RLPENVL--LKELELV----QNAFFTDPNDQSAWFYHRWLL-GRAE-PLFRCELSVEKSTVLQSELESCKELQELEPE-- 271 (334)
T ss_dssp SSCHHHH--HHHHHHH----HHHHHHCSSCSHHHHHHHHHH-SCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHhHHhH--HHHHHHH----HHHHHhcchhHHHHHHHHHHH-hCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--
Confidence 8888888 6655544 335567888899999999998 6774 4567788999999999999999999999987
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+....+++++|.+|...|++++|+++|+++++++|+++..|..|+.++..
T Consensus 272 --------------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 --------------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp --------------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred --------------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 344678999999999999999999999999999999999999999988774
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=9.6e-17 Score=164.56 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
.+.++++||.++..+|++++|+++|++|++.+|++
T Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 56788999999999999999999999999999976
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.6e-17 Score=176.89 Aligned_cols=134 Identities=7% Similarity=-0.063 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh----------cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR----------RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~----------g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
..++|++.+++++.++ |++..+|..++.++... |++++|+.++++++. .+|. +..+++++|.++..
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~-~~pk-~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPK-SYGTWHHRCWLLSR 119 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH-hCCC-cHHHHHHhhHHHHH
Confidence 3489999999999999 99999987777765554 458999999999999 7894 67899999999988
Q ss_pred cCC--HHHHHHHHHHHHHhchhcccCCccccccccCCccHHH-HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 406 LAK--YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI-TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 406 ~g~--~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~-~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
.++ +++|+.++++++... ++...+ ++.+|.++...+++++|+.+|++++.++|+++.+|++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~----------------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~ 183 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD----------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC----------------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 875 899999999999982 334455 4678899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 483 LAECCLM 489 (854)
Q Consensus 483 La~~~i~ 489 (854)
+|.++..
T Consensus 184 l~~~~~~ 190 (334)
T d1dcea1 184 RSCLLPQ 190 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.3e-14 Score=148.37 Aligned_cols=132 Identities=12% Similarity=-0.013 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 339 HAKREVKLAMNIAR--GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 339 ~A~~elk~al~~~~--~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
.|+..++.++.... .|+...+++.+|.+|...|++++|++.|++++. .+|+ .+.+|+++|.+|..+|++++|+.+|
T Consensus 17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~-l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-IRPD-MPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc-cCCC-CHHHHhhhchHHHHHHHHHHhhhhh
Confidence 34444455554320 045567899999999999999999999999999 7995 6889999999999999999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++++.+ .|....+++++|.+|..+|++++|+.+|+++++++|+++..+..++.++.
T Consensus 95 ~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 150 (259)
T d1xnfa_ 95 DSVLEL----------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 150 (259)
T ss_dssp HHHHHH----------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHH----------------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999998 34456899999999999999999999999999999999998888887666
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.9e-14 Score=131.68 Aligned_cols=112 Identities=12% Similarity=-0.049 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-+..+|+.++..|+|++|+.+|+++++ .+|. .+.+|+++|.+|..+|++++|+.+|.+++.+
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------- 66 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIK-LDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------------- 66 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCc-chhhhhcccccccccccccccchhhhhHHHh---------------
Confidence 3456789999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.|....+|+++|.++..+|++++|+.+|+++++++|+++.+|..++.+-
T Consensus 67 -~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 67 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 3556789999999999999999999999999999999999999999763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.8e-13 Score=131.33 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
..+..+|+.++..|+|++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|+++|++
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------------- 73 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIE-LNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--------------- 73 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccc-cchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHH---------------
Confidence 3455788999999999999999999999 7994 6889999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
.|....+|+++|.++..+|++++|+.+|++++.++|+++.++..++.|....
T Consensus 74 -~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 125 (159)
T d1a17a_ 74 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125 (159)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999999999999999999886643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.1e-13 Score=135.70 Aligned_cols=156 Identities=15% Similarity=0.017 Sum_probs=125.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
.++.++...|++++|++.+.+ +. |.++.+++.+|.+|+.+|++++|++.|++++. .+|. .+.+|+++|.+|..
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~---i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~-ldp~-~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSA---VQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RDKH-LAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---SS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHh---cC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH-Hhhh-hhhhHHHHHHHHHh
Confidence 468889999999999998875 56 78899999999999999999999999999999 7995 68899999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+|++++|+..|++|+...+....-+.......-.....++++|+|.++..+|++++|++.|.+++.+.|+....+...+.
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al 162 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 162 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 99999999999999987442110000000000011235789999999999999999999999999999987666666665
Q ss_pred HHH
Q 003047 486 CCL 488 (854)
Q Consensus 486 ~~i 488 (854)
.++
T Consensus 163 ~~~ 165 (192)
T d1hh8a_ 163 ECV 165 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=7.3e-14 Score=137.44 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
+...+-.+|+.++..|+|++|+++|++++. .+|. ++.+|+++|.+|.++|++++|+.+|++|+.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~-~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------------- 67 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL------------- 67 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-------------
Confidence 456677899999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|....+|+++|.+|+.+|++++|+.+|++++.++|++...|..++..++
T Consensus 68 ---~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 68 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999987665555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.7e-13 Score=153.31 Aligned_cols=140 Identities=9% Similarity=-0.044 Sum_probs=96.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
..++...+.++.|+..+++..+++ |++...+..+|..+...|++++|++.+.+++. .+| ..++++||.++..+|
T Consensus 93 ~~l~~a~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~---~~~~~~LG~l~~~~~ 166 (497)
T d1ya0a1 93 LFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS-YIC---QHCLVHLGDIARYRN 166 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------------------------------CCHHHH-HHH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC-CCH---HHHHHHHHHHHHHcc
Confidence 334455667788999999999999 99999999999999999999999999999988 455 467888999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
++++|+.+|++|+.+ .|.....++++|.++...|++.+|+.+|.+++.+.|.++.+|.+|+..+
T Consensus 167 ~~~~A~~~y~~A~~l----------------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 167 QTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp CHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999 3456789999999999999999999999999999999999999999887
Q ss_pred HH
Q 003047 488 LM 489 (854)
Q Consensus 488 i~ 489 (854)
..
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=8.9e-12 Score=131.05 Aligned_cols=142 Identities=18% Similarity=0.014 Sum_probs=100.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHH-hcCHHHHHHHHHHhhhc----cCCCccHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDS------SLALFLKSQLEYA-RRNHRKAIKLLLALSNR----TEMGISSMFN 396 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~------~~a~~lla~ly~~-~g~~~kAl~~l~kal~~----~dp~~~a~~~ 396 (854)
+.+|..+|++++|++.+++++++. ++. ..++..+|.++.. .|++++|+++|++++.. ..|.....++
T Consensus 84 g~~y~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~ 161 (290)
T d1qqea_ 84 YKCFKSGGNSVNAVDSLENAIQIF--THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHhhHHh--hhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHH
Confidence 344555666666666666666665 433 4567788888865 69999999999999873 1222345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.++|.+|..+|+|++|+.+|++++...+..... .......+++.|.+++..|+++.|..+|++++.++|..
T Consensus 162 ~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLS---------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT---------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHhCccchhh---------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 899999999999999999999999984322100 11124567899999999999999999999999999988
Q ss_pred HHHH
Q 003047 477 PLLW 480 (854)
Q Consensus 477 ~~aw 480 (854)
+..+
T Consensus 233 ~~sr 236 (290)
T d1qqea_ 233 ADSR 236 (290)
T ss_dssp ----
T ss_pred cchH
Confidence 7654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=1.2e-11 Score=130.01 Aligned_cols=232 Identities=10% Similarity=-0.024 Sum_probs=162.5
Q ss_pred chhhHH-HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 142 EFDVSV-AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 142 ~~~~~~-~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+.+.+. .|.+.|.+|..+|+|++|+++|++++.......+.. ....+..++.+|...|++++|+ .++++++.+..
T Consensus 32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~---~~~~~a~~~~~ 108 (290)
T d1qqea_ 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV---DSLENAIQIFT 108 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHhhHHhh
Confidence 345554 455558999999999999999999999766555543 4456777899999999999998 57788876641
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
... . . ...
T Consensus 109 ~~~-~-------------------------------~----------------------~~~------------------ 116 (290)
T d1qqea_ 109 HRG-Q-------------------------------F----------------------RRG------------------ 116 (290)
T ss_dssp HTT-C-------------------------------H----------------------HHH------------------
T ss_pred hcc-c-------------------------------c----------------------hhH------------------
Confidence 110 0 0 000
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHhcC
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL-TRNLKHAKREVKLAMNIARGKD------SSLALFLKSQLEYARRN 372 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~-~~~~~~A~~elk~al~~~~~P~------~~~a~~lla~ly~~~g~ 372 (854)
......-+.+|.. .+++++|++.+++++++. +. ...++..+|.++...|+
T Consensus 117 ---------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~--~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 117 ---------------------ANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH--HhcCchhhhhhHHHHHHHHHHHcCh
Confidence 0011122344433 599999999999999886 32 24557889999999999
Q ss_pred HHHHHHHHHHhhhccCCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 373 HRKAIKLLLALSNRTEMG------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 373 ~~kAl~~l~kal~~~dp~------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
|++|+++|++++. ..|. ....++.++|.++...|++..|...|++++.+.+.+. .......+
T Consensus 174 y~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~-----------~sre~~~l 241 (290)
T d1qqea_ 174 YIEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-----------DSRESNFL 241 (290)
T ss_dssp HHHHHHHHHHHHH-TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------------HHHH
T ss_pred HHHHHHHHHHHHH-hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-----------chHHHHHH
Confidence 9999999999998 3332 1234567899999999999999999999999855432 11223455
Q ss_pred HHHHHHHHH--CCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 447 YNCGLQYLA--CGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 447 ~nLG~~ll~--~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+..++.. .+++++|+..|+++.+++|-...+..++
T Consensus 242 ~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~ 280 (290)
T d1qqea_ 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (290)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 666666655 4569999999999888876544444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.1e-11 Score=123.20 Aligned_cols=109 Identities=15% Similarity=0.251 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
.++..|..++..|+|++|++.|.++. +| ++.+++|+|.+|..+|++++|+.+|++||++
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~---~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---------------- 65 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ---DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINR---------------- 65 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC---CC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH----------------
Confidence 45678999999999999999998753 34 4678999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ----------------PLLWLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~----------------~~aw~~La~~~i 488 (854)
.|..+.+|+++|.++..+|++++|+..|++++...|.+ ..+|+++|.++.
T Consensus 66 dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~ 131 (192)
T d1hh8a_ 66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 131 (192)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 34568899999999999999999999999999987654 356777777766
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1e-11 Score=120.74 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
..+...|+.++..|+|++|+.+|++++.. .|. ....+++|+|.+|.++|++++|+.+++++|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~- 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence 34556789999999999999999998872 221 12357889999999999999999999999999
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.|....+++++|.+|..+|++++|+.+|++++.++|+++.+...++.+...
T Consensus 92 ---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 92 ---------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ---------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 355788999999999999999999999999999999999999999988653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.33 E-value=1.4e-11 Score=117.61 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---------------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---------------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
.+...|+.++..|+|.+|+..|.+++.. .|. ....+++|+|.+|.++|++++|+.+|++||.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~- 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-
Confidence 4456789999999999999999998872 111 11346789999999999999999999999998
Q ss_pred hhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 424 ASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 424 ~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.|....+|+++|.+|..+|++++|+.+|++++.++|+++.++..+..|...
T Consensus 97 ---------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 97 ---------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp ---------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999999887653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.32 E-value=1.2e-11 Score=119.61 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc---------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNR---------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~---------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
+...|+.++..|+|++|++.|.+++.. .+| ....+++|+|.+|.++|++++|+.+|++||++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-- 106 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 106 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhCh-hhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence 345567777788888888888777641 235 35678899999999999999999999999998
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.|..+.+|+++|.+|+.+|++++|+.+|+++++++|+++.++..|+.|......
T Consensus 107 --------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 107 --------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred --------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999988764433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.5e-11 Score=111.98 Aligned_cols=107 Identities=9% Similarity=-0.038 Sum_probs=98.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++..++..|++++|+..++++++++ |+++.++..+|.+|..+|++++|+..|.+++. .+|. .+.+|+++|.+|..+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPD-WGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHH-hccc-hhhHHHHHHHHHHHc
Confidence 7888999999999999999999999 99999999999999999999999999999999 7895 678999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
|++++|+.+|++++.. .|.+..++.+++.+.
T Consensus 85 ~~~~~A~~~~~~a~~~----------------~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH----------------EANNPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHh
Confidence 9999999999999998 344567777777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.1e-11 Score=116.69 Aligned_cols=120 Identities=6% Similarity=-0.131 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
-++..|+..|++++|+..++++++++ |+++.+++.+|.+++..|++++|+..|++++. .+|. ...+|+++|.+|..
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~-~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHH-Hccc-chHHHHHHHHHHHH
Confidence 36888999999999999999999999 99999999999999999999999999999999 7895 67899999999999
Q ss_pred cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH--HHCCCcHHHHHH
Q 003047 406 LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY--LACGKPVLAARC 465 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l--l~~Gk~eeAl~~ 465 (854)
+|++++|+.+|++++.+. |.+..++..++.+. +..+.+++|+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~----------------p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999982 33456666666553 333335555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.29 E-value=2.2e-11 Score=117.96 Aligned_cols=117 Identities=19% Similarity=0.082 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC-----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG-----------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~-----------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
.+...|+.++..|+|++|+.+|.+++.. ..+. ....+++|+|.||.++|++++|+.+|+++|.+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--- 93 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--- 93 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc---
Confidence 4456789999999999999999998862 1110 23456889999999999999999999999998
Q ss_pred cccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 003047 426 LRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMAL 491 (854)
Q Consensus 426 l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~ 491 (854)
.|....+++++|.+|..+|++++|+.+|.+++.++|+++.++..++.|.....
T Consensus 94 -------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 94 -------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred -------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999998876443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=1.1e-11 Score=121.41 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=90.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
++..|...|++++|+..+++++.++ |+++.+++.+|.+|+..|+|++|+++|++++. .+|. ++.+|+++|.+|..+
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-l~p~-~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQ-SVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-hCCC-cHHHHHHHHHHHHHC
Confidence 5888899999999999999999999 99999999999999999999999999999999 7994 688999999999999
Q ss_pred CCHHHHHHHHHHHHHhchh
Q 003047 407 AKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~ 425 (854)
|++++|+.+|++|+.+.|.
T Consensus 86 ~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 86 ESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999999998553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.9e-12 Score=141.29 Aligned_cols=231 Identities=12% Similarity=0.016 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCc
Q 003047 45 ECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGV 124 (854)
Q Consensus 45 ~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 124 (854)
+|.++|+++++++|+.+.+++++|.++..++ ++.++ .++.+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~------~l~ea---ye~~i~----------------------------- 45 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQ------ALQDL---YQKMLV----------------------------- 45 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHH------HHHHH---HHHHHH-----------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHc------hHHHH---HHHHHH-----------------------------
Confidence 6889999999999999999999998877553 33333 233331
Q ss_pred ccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHH
Q 003047 125 VGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRS 204 (854)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA 204 (854)
. ||+.+..+...+.++ ...|.++++.+++..+.....+.... ...++..++...+.|++|
T Consensus 46 ---------------~-dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~--~~~~~~~l~~a~~~Y~~a 105 (497)
T d1ya0a1 46 ---------------T-DLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEV--QANLSLFLEAASGFYTQL 105 (497)
T ss_dssp ---------------H-CHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred ---------------c-ChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHH--HHHHHHHHHHHHHHHHHH
Confidence 1 455544443333333 33477889999888875444333322 123345667777888888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 003047 205 ADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLAL 284 (854)
Q Consensus 205 ~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (854)
+ ..+++.+.+. ++.
T Consensus 106 i---~~l~~~~~l~----~~~----------------------------------------------------------- 119 (497)
T d1ya0a1 106 L---QELCTVFNVD----LPC----------------------------------------------------------- 119 (497)
T ss_dssp H---HHHTC-----------------------------------------------------------------------
T ss_pred H---HHHHHHHCCC----hhh-----------------------------------------------------------
Confidence 6 3445444332 000
Q ss_pred hhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003047 285 SSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKS 364 (854)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla 364 (854)
..+++++|.++ ...++.++|...+++++... |. .+++.+|
T Consensus 120 --------------~~~~~~lg~~~----------------------~~~~~~~~A~~~~~~al~~~--~~--~~~~~LG 159 (497)
T d1ya0a1 120 --------------RVKSSQLGIIS----------------------NKQTHTSAIVKPQSSSCSYI--CQ--HCLVHLG 159 (497)
T ss_dssp -----------------------------------------------------------CCHHHHHH--HH--HHHHHHH
T ss_pred --------------HHHHHHhHHHH----------------------HhCCCHHHHHHHHHHHhCCC--HH--HHHHHHH
Confidence 01222333333 34567777777777777777 53 6788899
Q ss_pred HHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH
Q 003047 365 QLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL 444 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~ 444 (854)
.++..+|++++|+.+|++++. .+|+ .+..|++||.+|...|++.+|+.+|.|||.. .++.+.
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~-l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~----------------~~~~~~ 221 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQ-LVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV----------------KFPFPA 221 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS----------------SBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-HCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------------CCCCHH
Confidence 999999999999999999999 7884 5778999999999999999999999999987 234556
Q ss_pred HHHHHHHHHHHCC
Q 003047 445 ITYNCGLQYLACG 457 (854)
Q Consensus 445 ~~~nLG~~ll~~G 457 (854)
++.||+..+....
T Consensus 222 a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 222 ASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 6666666655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.2e-11 Score=111.12 Aligned_cols=111 Identities=6% Similarity=-0.149 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA---KYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
.+++.+...+++++|.+.|++++. .+|. .+.+++|+|.++.+.+ ++.+|+..|+++|...+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~-~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-------------- 67 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA-AGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------------- 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC--------------
Confidence 456788899999999999999999 7884 6889999999997644 45679999999998621
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+||++|.+|..+|++++|+.+|+++|+++|++..++..+..+.-
T Consensus 68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 12235689999999999999999999999999999999999888876654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.22 E-value=2.8e-11 Score=109.39 Aligned_cols=92 Identities=12% Similarity=-0.058 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+..+.++..+|++++|+..+++++.++ |+++.+++.+|.++...|++++|+.+|++++. .+|. .+.++.+||.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPK-DIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccc-cccc-cccchHHHHHHHH
Confidence 445556666666666666666666666 66666666666666666666666666666666 4553 4555666666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKAL 420 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL 420 (854)
.+|++++|+++|+|.|
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.5e-11 Score=108.63 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFS 438 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~ 438 (854)
.+-.+|+.++..|+|++|+++|++++. .+|. ++.++.++|.+|..+|++++|+.+|++|+.+.+.....
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--------- 74 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE-LDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------- 74 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH---------
Confidence 445789999999999999999999999 7895 68899999999999999999999999999986543210
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
......+++++|.++..++++++|+++|++++..+|+ +.+...+..
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 120 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ 120 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 0113568899999999999999999999999999875 555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.17 E-value=8.1e-11 Score=106.24 Aligned_cols=65 Identities=14% Similarity=-0.043 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
..+.+|..++..|++++|+.+|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++++.|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 82 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQ-KEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 82 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcc-cccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence 357789999999999999999999999 7894 6889999999999999999999999999999664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.16 E-value=4.5e-11 Score=113.27 Aligned_cols=104 Identities=11% Similarity=-0.089 Sum_probs=84.6
Q ss_pred HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 367 EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----------LAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 367 y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----------~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
+-+.++|++|++.|++++. .+|+ ++.+++++|.++.. ++++++|+.+|++|+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~-~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------------- 70 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK-SNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------------- 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHccHHHHHHHHHHHHh-hCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------------
Confidence 4456667777777777777 6773 56777777777764 34568999999999999
Q ss_pred ccCCccHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGK-----------PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk-----------~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|.++.+|+++|.+|..+|+ +++|+++|++++.++|++..+|..|+.+..
T Consensus 71 --~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 71 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred --cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 45678999999999988764 799999999999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.15 E-value=4.3e-09 Score=107.68 Aligned_cols=230 Identities=15% Similarity=0.072 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhhcccc
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA----CHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~----~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
|+..++++|..+++.++|.+|+++|+++... ++. .+++.|+.+|.. ..++.+|. .+++++.....+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~---~A~~~Lg~~y~~G~~~~~d~~~a~---~~~~~a~~~~~~ 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KEN---SGCFNLGVLYYQGQGVEKNLKKAA---SFYAKACDLNYS 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCH---HHHHHHHHHHHcCCCcchhHHHHH---Hhhccccccccc
Confidence 3568999999999999999999999999762 333 358889999998 67888887 466766543200
Q ss_pred cCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhccccCCCC
Q 003047 221 NQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT-----LSEETLEDDTVLALSSLEISGQNLT 295 (854)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (854)
.. ..+.+.....- .-+.++...... .. .
T Consensus 71 -----------------------------------~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~a----~~---~--- 103 (265)
T d1ouva_ 71 -----------------------------------NG--CHLLGNLYYSGQGVSQNTNKALQYYSKA----CD---L--- 103 (265)
T ss_dssp -----------------------------------HH--HHHHHHHHHHTSSSCCCHHHHHHHHHHH----HH---T---
T ss_pred -----------------------------------ch--hhccccccccccccchhhHHHHHHHhhh----hh---h---
Confidence 00 01111111100 001122211111 00 0
Q ss_pred CCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hc
Q 003047 296 RPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RR 371 (854)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g 371 (854)
+...+..++|..+.. ..........|...+..... +.+...++.+|.++.. ..
T Consensus 104 -g~~~a~~~l~~~~~~------------------~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 104 -KYAEGCASLGGIYHD------------------GKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp -TCHHHHHHHHHHHHH------------------CSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCC
T ss_pred -hhhhHHHhhcccccC------------------CCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccc
Confidence 000111111111111 01123455556666655444 5578899999999986 56
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~ 447 (854)
+...+..+++.+.+ + .++.++++||.+|.. .+++++|+.+|+++... .++.+++
T Consensus 161 ~~~~~~~~~~~a~~---~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------------------g~~~a~~ 218 (265)
T d1ouva_ 161 DLKKALASYDKACD---L-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------------------ENGGGCF 218 (265)
T ss_dssp CHHHHHHHHHHHHH---T-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------------------TCHHHHH
T ss_pred ccccchhhhhcccc---c-cccccccchhhhcccCcccccchhhhhhhHhhhhcc------------------cCHHHHH
Confidence 77788888888876 2 246788899999987 67899999999999886 2467899
Q ss_pred HHHHHHHH----CCCcHHHHHHHHHHHHhcCCC
Q 003047 448 NCGLQYLA----CGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 448 nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+||.+|.. .+++++|+++|++|....+..
T Consensus 219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 99999986 447999999999998887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.06 E-value=2.8e-10 Score=108.48 Aligned_cols=114 Identities=12% Similarity=0.001 Sum_probs=88.8
Q ss_pred HHHHH--HHHHHHHhcCHHHHHHHHHHhhhccCCC-----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 358 LALFL--KSQLEYARRNHRKAIKLLLALSNRTEMG-----------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 358 ~a~~l--la~ly~~~g~~~kAl~~l~kal~~~dp~-----------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
.++.. .|+.++..|+|++|++.|++++.. .|. ..+.+|+|+|.+|.++|++++|+.+|+++|.+.+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i-~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 34444 488999999999999999999983 221 1256899999999999999999999999999865
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+.....+ ...+....+++++|.+|..+|++++|+.+|++++++.|+..
T Consensus 87 ~~~~~~~-----~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 87 RRGELNQ-----DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHCCTTS-----THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccc-----cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 4321000 00012345789999999999999999999999999987653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.7e-10 Score=103.87 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=90.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA---RRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYY 404 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~---~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~ 404 (854)
..++..+++++|.+.+++++.++ |+++.+++.+|.+++. .+++++|+++|++++. .+|. ....++++||.+|.
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHH
Confidence 34567889999999999999999 9999999999999985 5667789999999998 5652 12458899999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
++|++++|+.+|+++|++ .|.+..+...++.+..+
T Consensus 84 ~~g~~~~A~~~~~~aL~~----------------~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT----------------EPQNNQAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHH
Confidence 999999999999999999 34456676666665544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.4e-10 Score=96.55 Aligned_cols=87 Identities=13% Similarity=-0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.-.+++|.+++++|+|.+|+.+|++|+++.+.-... ......+++|+|.++..+|++++|+.+|+++|++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~---------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS---------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC---------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc---------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3446689999999999999999999999985432111 1235789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 003047 473 FYKQPLLWLRLAECCL 488 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i 488 (854)
+|+++.++.+++.+..
T Consensus 76 ~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEY 91 (95)
T ss_dssp CTTCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999999999987644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.04 E-value=3.5e-10 Score=106.99 Aligned_cols=108 Identities=9% Similarity=-0.018 Sum_probs=89.6
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh----------cCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR----------RNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~----------g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+.+++|+..+++++.++ |+++.+++.+|.++... +++++|++.|+++++ .+|. .+.+|+++|.+
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~-l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-hcch-hhHHHhhHHHH
Confidence 4567899999999999999 99999999999999854 556899999999999 7995 68899999999
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 403 YYQLAK-----------YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 403 y~~~g~-----------~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
|..+|+ +++|+.+|++|+.+ .|.+..++.+|+.+.-..+.+.
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l----------------~P~~~~~~~~L~~~~ka~~~~~ 137 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE----------------QPDNTHYLKSLEMTAKAPQLHA 137 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHTHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc----------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 988764 68999999999998 3445677777777754333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.2e-09 Score=101.84 Aligned_cols=117 Identities=7% Similarity=-0.060 Sum_probs=101.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI 391 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~ 391 (854)
++..+...|++++|++.+++++... |.. ...+..+|.+|+..|+|++|+.++++++. .+|.
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~-~~p~- 94 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-LDSN- 94 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh--hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh-cccc-
Confidence 5678899999999999999999998 654 24567799999999999999999999999 7994
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
++.+++++|.+|..+|++++|+.+|++++.+ .|.+..+...++.+....++..+..
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l----------------~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQL----------------YPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998 3446677888888887777765543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.97 E-value=1.6e-07 Score=95.74 Aligned_cols=229 Identities=16% Similarity=0.127 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEG 107 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 107 (854)
+.++.-|..+++.|+|++|++.|+++.+. +++.++++||.+++...+ -+.++..+...+..+..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~--~~~d~~~a~~~~~~a~~------------ 66 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQG--VEKNLKKAASFYAKACD------------ 66 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC--cchhHHHHHHhhccccc------------
Confidence 57888899999999999999999999875 689999999988765433 23455667777777662
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCCCchhh
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
...+...+++|.++.. ..++++|+..|++.... ....
T Consensus 67 -----------------------------------~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~----g~~~ 107 (265)
T d1ouva_ 67 -----------------------------------LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAE 107 (265)
T ss_dssp -----------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred -----------------------------------ccccchhhccccccccccccchhhHHHHHHHhhhhhh----hhhh
Confidence 2245578889988775 57899999999888762 1121
Q ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhh
Q 003047 184 ALQICLLLLDVALA----CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAAT 259 (854)
Q Consensus 184 ~~~~~l~l~~vy~~----~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (854)
.+..++..+.. .....+|+ ..+.+..... + .
T Consensus 108 ---a~~~l~~~~~~~~~~~~~~~~a~---~~~~~~~~~~-----~-------------------------------~--- 142 (265)
T d1ouva_ 108 ---GCASLGGIYHDGKVVTRDFKKAV---EYFTKACDLN-----D-------------------------------G--- 142 (265)
T ss_dssp ---HHHHHHHHHHHCSSSCCCHHHHH---HHHHHHHHTT-----C-------------------------------H---
T ss_pred ---HHHhhcccccCCCcccchhHHHH---HHhhhhhccc-----c-------------------------------c---
Confidence 24445555543 22334443 2223222111 0 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHH
Q 003047 260 VNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKH 339 (854)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~ 339 (854)
.+..+||..|..... ...+...
T Consensus 143 ----------------------------------------~~~~~L~~~~~~~~~------------------~~~~~~~ 164 (265)
T d1ouva_ 143 ----------------------------------------DGCTILGSLYDAGRG------------------TPKDLKK 164 (265)
T ss_dssp ----------------------------------------HHHHHHHHHHHHTSS------------------SCCCHHH
T ss_pred ----------------------------------------chhhhhhhhhccCCC------------------ccccccc
Confidence 012233333322100 1234444
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHT 411 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~e 411 (854)
+...++.+.+ +.++.+++.+|.+|.. ..++++|+.+|+++.. .. .+.++++||.+|.. .+++.+
T Consensus 165 ~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~-~g---~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 165 ALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred chhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhc-cc---CHHHHHHHHHHHHcCCCCccCHHH
Confidence 5555555543 5689999999999997 6799999999999988 32 35688899999986 458999
Q ss_pred HHHHHHHHHHh
Q 003047 412 SSVFLSKALSN 422 (854)
Q Consensus 412 Ai~~f~kAL~~ 422 (854)
|+.+|++|...
T Consensus 237 A~~~~~kAa~~ 247 (265)
T d1ouva_ 237 AIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999999886
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.9e-09 Score=97.99 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=83.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc------cHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI------SSMFNNNLG 400 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~------~a~~~nnLG 400 (854)
++..|...|++++|++.++++++++ |+++.+++.+|.+|..+|+|++|++.|++++. .+|.. .+.+|.++|
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999 99999999999999999999999999999998 34421 135788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003047 401 CIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.++..++++++|+.+|++++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.95 E-value=2.5e-09 Score=103.01 Aligned_cols=119 Identities=8% Similarity=-0.059 Sum_probs=99.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcC--------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIAR--------------GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~--------------~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~ 392 (854)
++..+...|++++|++.+++++.... .|.+..++..+|.+|..+|+|++|+..|++++. .+|. .
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~~p~-~ 110 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-IDPS-N 110 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh-hhhh-h
Confidence 46677788899999999988876430 166777889999999999999999999999999 7994 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
+.+|+++|.+|..+|++++|+.+|++++++ .|.+..+...++.+.....++.++.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l----------------~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEI----------------APEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999 3445677888888887776665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=7.7e-08 Score=101.05 Aligned_cols=201 Identities=10% Similarity=0.003 Sum_probs=155.3
Q ss_pred HhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhh
Q 003047 158 HLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLA 237 (854)
Q Consensus 158 ~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~ 237 (854)
..+.+++|.++|++.++.+.+.... +.+.++.++..+|++++|..+ |++++... +..
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~----l~~~ya~~~~~~~~~~~a~~i---~~~~l~~~----~~~------------ 132 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNML----LYFAYADYEESRMKYEKVHSI---YNRLLAIE----DID------------ 132 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHH----HHHHHHHHHHHTTCHHHHHHH---HHHHHTSS----SSC------------
T ss_pred cccchHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcccHHHHHHH---HHHHHHHh----cCC------------
Confidence 3456788999999999876665543 577788999999999999865 57776543 100
Q ss_pred ccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchh
Q 003047 238 KYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTV 317 (854)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 317 (854)
.
T Consensus 133 ------------------~------------------------------------------------------------- 133 (308)
T d2onda1 133 ------------------P------------------------------------------------------------- 133 (308)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEY-ARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~-~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
..+.+..+.+....++++.|.+.+++++... |.....+...|.+.. ..|+.+.|.++|++++. ..|. .+.++
T Consensus 134 ---~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~-~~p~-~~~~w 206 (308)
T d2onda1 134 ---TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-KYGD-IPEYV 206 (308)
T ss_dssp ---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HHTT-CHHHH
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hhhh-hHHHH
Confidence 0022223556667899999999999999999 999999999998765 46899999999999999 6784 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
...+.++...|+++.|...|++|+...+.- ......+|......-...|+.+.+..+++++.+++|+.
T Consensus 207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~------------~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLP------------PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSC------------GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 999999999999999999999999963200 01223456555565677799999999999999999988
Q ss_pred HHH
Q 003047 477 PLL 479 (854)
Q Consensus 477 ~~a 479 (854)
...
T Consensus 275 ~~~ 277 (308)
T d2onda1 275 YEG 277 (308)
T ss_dssp TSS
T ss_pred ccc
Confidence 653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.87 E-value=2.9e-08 Score=95.37 Aligned_cols=129 Identities=9% Similarity=-0.072 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
-++..+...|++++|+..+++++... |.. ...+.++|.+|+.+|++++|+..+++++. .+|.
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~-l~p~ 96 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-LDSA 96 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH--HHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh-cccc
Confidence 46888999999999999999999876 432 24567799999999999999999999999 7995
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH-HHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL-AARCFQKS 469 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee-Al~~y~kA 469 (854)
+..+++++|.+|..+|++++|+.+|++++.+ .|.+..++..++.+....+++.+ ....|.+.
T Consensus 97 -~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l----------------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 97 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----------------NPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6889999999999999999999999999998 34566788888988888777554 44666555
Q ss_pred HHhcC
Q 003047 470 SLVFY 474 (854)
Q Consensus 470 L~l~P 474 (854)
+.-.+
T Consensus 160 f~~~~ 164 (168)
T d1kt1a1 160 FKKFA 164 (168)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 54433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.86 E-value=1.6e-08 Score=95.81 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=94.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDS----------------SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~----------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
++..+...|++.+|+..++++++.. |.. ...+.++|.+|+.+|++++|++.|++++. .+|.
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~-~~p~ 99 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK-IDKN 99 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc-ccch
Confidence 6778889999999999999999877 533 23567899999999999999999999999 7994
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
+..+|+++|.+|..+|++++|+.+|++++++ .|.+..+..+++.+..++
T Consensus 100 -~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 100 -NVKALYKLGVANMYFGFLEEAKENLYKAASL----------------NPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHH
T ss_pred -hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999 344567777777766544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1.3e-06 Score=91.48 Aligned_cols=217 Identities=7% Similarity=-0.111 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh--------------cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYAR--------------RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~--------------g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
+.+..-+++++... |.++..|+.-+..+... +..++|.++|++++....| .....+...+.++
T Consensus 33 ~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p-~~~~l~~~ya~~~ 109 (308)
T d2onda1 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 44666789999999 99999988777665443 4568999999999972245 4577888899999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+|++++|...|+++|...+ .....+|...+......|++++|.++|.+++...|..+..|...
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~---------------~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIED---------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSS---------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999998721 11245788889999999999999999999999999999999887
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 003047 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563 (854)
Q Consensus 484 a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nA 563 (854)
|.... .. . | ..+.|..+|+.+
T Consensus 175 a~~e~---~~--------------------------------------~-----~-------------~~~~a~~i~e~~ 195 (308)
T d2onda1 175 ALMEY---YC--------------------------------------S-----K-------------DKSVAFKIFELG 195 (308)
T ss_dssp HHHHH---HT--------------------------------------S-----C-------------CHHHHHHHHHHH
T ss_pred HHHHH---Hh--------------------------------------c-----c-------------CHHHHHHHHHHH
Confidence 75432 10 0 0 246799999999
Q ss_pred HhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccch
Q 003047 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYY 643 (854)
Q Consensus 564 L~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~ 643 (854)
+...|....
T Consensus 196 l~~~p~~~~----------------------------------------------------------------------- 204 (308)
T d2onda1 196 LKKYGDIPE----------------------------------------------------------------------- 204 (308)
T ss_dssp HHHHTTCHH-----------------------------------------------------------------------
T ss_pred HHhhhhhHH-----------------------------------------------------------------------
Confidence 999888542
Q ss_pred hhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChH----HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003047 644 EDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSR----IYIFLGHIYAAEALCLLNRPKEAAEHFS 718 (854)
Q Consensus 644 ~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~----~~~~la~lY~aeAl~~lgr~~eAl~~l~ 718 (854)
++...+..+...|++..|...+++++. .|..+. .+....... ...|.++.+..+++
T Consensus 205 --------------~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE-----~~~G~~~~~~~~~~ 265 (308)
T d2onda1 205 --------------YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-----SNIGDLASILKVEK 265 (308)
T ss_dssp --------------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH-----HHHSCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-----HHcCCHHHHHHHHH
Confidence 123335557789999999999999997 343332 444444322 24699999999999
Q ss_pred hhh
Q 003047 719 MYL 721 (854)
Q Consensus 719 ~~l 721 (854)
++.
T Consensus 266 r~~ 268 (308)
T d2onda1 266 RRF 268 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.72 E-value=3.5e-08 Score=93.57 Aligned_cols=100 Identities=10% Similarity=-0.032 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDS------------SLALFLKSQLEYARRNHRKAIKLLLALSNR------ 386 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~------ 386 (854)
+-++..++..|++++|++.+++++++. |+. ..++.++|.+|..+|++++|++.+++++..
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~--~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~ 90 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 90 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--hhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence 345778889999999999999999999 765 357889999999999999999999999972
Q ss_pred cCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 387 TEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 387 ~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
..+. ....+++++|.+|..+|++++|+.+|++|+++.++.
T Consensus 91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1111 234578999999999999999999999999996543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.8e-08 Score=85.64 Aligned_cols=83 Identities=10% Similarity=0.005 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--c----CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR--T----EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~----dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
++-.|.+|.+++..|+|++|+..|+++++. . .+ ..+.++++||.+|.++|++++|+.+|+++|++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~-~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI-DKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS-CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc-cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 466789999999999999999999999973 1 12 34678999999999999999999999999999
Q ss_pred ccccccccCCccHHHHHHHHHHHHHC
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
.|.+..+++|++.....+
T Consensus 76 --------~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 76 --------DPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp --------CTTCHHHHHHHHHHHHHH
T ss_pred --------CcCCHHHHHHHHHHHHHh
Confidence 355678999987765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.56 E-value=1.9e-08 Score=104.49 Aligned_cols=137 Identities=8% Similarity=-0.111 Sum_probs=111.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
+-.+..|++++|++.++++++.+ |++..++..+|.+++..|++++|++.|+++++ .+|. ...++..++.++...++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-l~P~-~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPE-YLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGG-GHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHhccc
Confidence 45667899999999999999999 99999999999999999999999999999999 7894 57788888888876655
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
..++...+.+... ...++....+...+..+...|++++|.+.+.++.++.|+.+..|...+
T Consensus 80 ~~~a~~~~~~~~~---------------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~ 140 (264)
T d1zbpa1 80 RKDFAQGAATAKV---------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140 (264)
T ss_dssp HHHHTTSCCCEEC---------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred cHHHHHHhhhhhc---------------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccC
Confidence 5443322221111 112344567778899999999999999999999999999998876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.19 E-value=6.1e-06 Score=79.98 Aligned_cols=123 Identities=7% Similarity=-0.109 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHH
Q 003047 317 VDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFN 396 (854)
Q Consensus 317 ~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~ 396 (854)
+-..|.-++-++......|++++|...+.+++.+. |.+....+..+.+. .. .... ..+ ....++
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~~~~~~w~---------~~---~r~~-l~~-~~~~a~ 70 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDDLRDFQFV---------EP---FATA-LVE-DKVLAH 70 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGGGTTSTTH---------HH---HHHH-HHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccccccCcchHHH---------HH---HHHH-HHH-HHHHHH
Confidence 34556677778888888888888888888888888 54432211111110 01 1111 112 235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
.+++.++..+|++++|+.++++++.. .|.+..+|.+++.+|...|++.+|+++|+++..
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~----------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFE----------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88999999999999999999999998 456788999999999999999999999999833
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=1.8e-05 Score=76.58 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=84.3
Q ss_pred ccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHH
Q 003047 301 SSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLK----HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKA 376 (854)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~----~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kA 376 (854)
++.+.|...... +++..++..|..-+-+..|.+- ...-.......+. +....++..++.++...|++++|
T Consensus 13 ~~~~~g~~~~~~----g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~--~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 13 AEKTAGVHAAAA----GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV--EDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCchHH
Confidence 566777777655 5555556655554444444321 0001112223344 55678899999999999999999
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+.++++++. .+| ....+|.+++.+|..+|++.+|+..|+++...+
T Consensus 87 l~~~~~al~-~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 87 IAELEALTF-EHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp HHHHHHHHH-HST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999999 799 468899999999999999999999999997764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.94 E-value=3.7e-05 Score=70.10 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=90.8
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYH 410 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~ 410 (854)
+++++|++-++++.+.. ++.+++.+|. ....++++|+++|+++... .++.+.++||.+|.. ..++.
T Consensus 7 kd~~~A~~~~~kaa~~g----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----g~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN----EMFGCLSLVS--NSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHCC----Chhhhhhhcc--ccccCHHHHHHHHhhhhcc----cchhhhhhHHHhhhhccccchhhH
Confidence 46678888888888776 5566666664 4567899999999999872 246778889999987 56799
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCC
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+|+++|+++.+. .++.+.++||.+|.. ..++++|+.+|++|.+....
T Consensus 77 ~A~~~~~~aa~~------------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 77 KAAQYYSKACGL------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhcc------------------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 999999999886 246789999999998 46799999999999886543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=0.00013 Score=74.82 Aligned_cols=126 Identities=9% Similarity=0.050 Sum_probs=96.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 003047 33 EAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIG 112 (854)
Q Consensus 33 ~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 112 (854)
++..++..|++++|+..|+++++.+|+|+.+..+++.+++..+ ++.+++..+++.++.
T Consensus 2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G------~~e~A~~~l~~a~~l---------------- 59 (264)
T d1zbpa1 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG------DFERADEQLMQSIKL---------------- 59 (264)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHh----------------
Confidence 3567789999999999999999999999999999998887665 355577777777742
Q ss_pred CcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHH
Q 003047 113 SKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLL 192 (854)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~ 192 (854)
+|+....+.+++.++...++..++...+.+.....++ -.....++.+
T Consensus 60 -----------------------------~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p----~~~~~~l~~a 106 (264)
T d1zbpa1 60 -----------------------------FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGEN----EELTKSLVSF 106 (264)
T ss_dssp -----------------------------CGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSC----HHHHHHHHHH
T ss_pred -----------------------------CCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCc----hHHHHHHHHH
Confidence 5778889999999999999988877765443332222 2223466677
Q ss_pred HHHHHccCHHHHHHHHHHHHH
Q 003047 193 DVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 193 ~vy~~~~~~~kA~~~l~~lek 213 (854)
.++...|++++|++.+....+
T Consensus 107 ~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 107 NLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHh
Confidence 999999999999976544443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=0.00085 Score=60.32 Aligned_cols=77 Identities=8% Similarity=-0.072 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 393 SMFNNNLGCIYYQLA---KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 393 a~~~nnLG~iy~~~g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
....++.|+++.+.. +..+||..|++++...+ ....+++|+||+.|..+|+|++|..+++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p---------------~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---------------SRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---------------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc---------------hhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566777888877654 45689999999887621 123479999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHH
Q 003047 470 SLVFYKQPLLWLRLA 484 (854)
Q Consensus 470 L~l~P~~~~aw~~La 484 (854)
|+++|++..++.-.-
T Consensus 100 L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 100 FEHERNNKQVGALKS 114 (124)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HccCCCcHHHHHHHH
Confidence 999999998865443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.0011 Score=59.50 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHH---hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 357 SLALFLKSQLEYA---RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 357 ~~a~~lla~ly~~---~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+...|..|..+.. ..+.++++.+|+.+++ .+|.....++++||..|.++|+|++|..+++++|++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 5677888877774 4667899999999998 6775456788999999999999999999999999993
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.0066 Score=54.43 Aligned_cols=81 Identities=14% Similarity=0.018 Sum_probs=68.0
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ---- 405 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~---- 405 (854)
..+.++|++-++++.+.+ ++.+++.+|.+|.. ..++++|+++|+++... . ++.+.++||.+|..
T Consensus 36 ~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~Lg~~y~~G~gv 107 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGV 107 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSS
T ss_pred ccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-C---cchHHHHHHHHHHcCCcc
Confidence 356677888888887655 89999999999986 56799999999999882 2 35678889999987
Q ss_pred cCCHHHHHHHHHHHHHh
Q 003047 406 LAKYHTSSVFLSKALSN 422 (854)
Q Consensus 406 ~g~~~eAi~~f~kAL~~ 422 (854)
..++.+|+.+|++|.+.
T Consensus 108 ~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 108 VKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 56899999999999886
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.11 E-value=1.2 Score=36.97 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
.-.+.|..|+.+|+++-..|+|++|+.+|.++++.
T Consensus 10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 44 (93)
T d1wfda_ 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999873
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.22 E-value=0.87 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHHH--HHHHHHhcCCHHHHHHHHHhhhc
Q 003047 693 IFLGHIY--AAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 693 ~~la~lY--~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
.++||.| .||.++..|+++|||+|++.+..
T Consensus 5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~ 36 (83)
T d2crba1 5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATT 36 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678887 68999999999999999999883
|