Citrus Sinensis ID: 003062
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | 2.2.26 [Sep-21-2011] | |||||||
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | yes | no | 0.948 | 0.582 | 0.558 | 0.0 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | yes | no | 0.980 | 0.606 | 0.422 | 0.0 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | yes | no | 0.954 | 0.576 | 0.430 | 0.0 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | no | no | 0.933 | 0.479 | 0.327 | 1e-105 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.877 | 0.456 | 0.317 | 6e-91 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | no | no | 0.595 | 0.265 | 0.357 | 9e-86 | |
| Q5N870 | 1651 | Endoribonuclease Dicer ho | no | no | 0.927 | 0.478 | 0.295 | 1e-85 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | no | no | 0.629 | 0.284 | 0.341 | 1e-84 | |
| P84634 | 1702 | Dicer-like protein 4 OS=A | no | no | 0.923 | 0.462 | 0.300 | 4e-84 | |
| Q9LXW7 | 1580 | Endoribonuclease Dicer ho | no | no | 0.807 | 0.435 | 0.306 | 4e-81 |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function desciption |
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Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/822 (55%), Positives = 585/822 (71%), Gaps = 14/822 (1%)
Query: 32 YFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDN 91
YFKP P+FD+NK+ G CTLYLP +CP++ V A+ N K LKQ CL+AC +LH++GAL+D+
Sbjct: 575 YFKPAPRFDVNKDQGSCTLYLPKSCPVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDH 634
Query: 92 LLPDVVVEEHDAQKHGNEPYDAEHPIYFPPELVNQCPQDTKITYHCYLIELKQNFNYDIP 151
L+PD+VV E +QK Y+ E P YFPPELV+Q + TYH YLI +K N +
Sbjct: 635 LVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFH 694
Query: 152 AHDIVLAVRTELESEIKKVNFDLEVDRGRLTVNLKHLGKIQLTPDKVLLCRRFQIALFRV 211
+D++L R LE +I +F LE RG + V L ++G LT ++VL CRRFQI LFRV
Sbjct: 695 LNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRV 754
Query: 212 IMDHNLDKLNEILKGLWLRDNLEIDYLLLPASEQS----IDWEPVASLSFPCDIGLKHHK 267
++DH+++ L E L GL LRD + +DYLL+P++ IDWE + S++ L+ H+
Sbjct: 755 LLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 814
Query: 268 NCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAI 327
NCST +R++ TK G CTC++ N++V TPH+G +Y GVL +LN NSL T+ + G
Sbjct: 815 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQ 874
Query: 328 TYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKISFELPPELCRII 387
TY ++YEER+GIQL F E LLNGR IF +YL +++K++E + ELPPELC +I
Sbjct: 875 TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVI 934
Query: 388 MGPMSLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQ 447
+ P+S+ YS+TF+PS+M R++SLL+A NLK + V IPT KVLEAITTKKC+
Sbjct: 935 LSPISVDMIYSYTFIPSVMQRIESLLIAYNLKK-----SIPKVNIPTIKVLEAITTKKCE 989
Query: 448 EGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPG 507
+ FHLESLETLGDSFLKYA QQLF+ HHEGLLS KKD +ISN LC+ GC KL G
Sbjct: 990 DQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQG 1049
Query: 508 FIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFL 567
FIR E F+PK WM+PG +S +Y L + +L R IYV R+ +K K+VADVVE+LIGA+L
Sbjct: 1050 FIRDECFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYL 1109
Query: 568 STGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEA 627
S GGE L+F++ +GIKVDF +R +QAE+LVNV ++ESLLNYSF D SLLVEA
Sbjct: 1110 SEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEA 1169
Query: 628 LTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYA 687
LTHGSYM+PEIPRCYQRLEFLGD+VLDYLIT +LY+KYP LSPG LTDMRSASVNN+CYA
Sbjct: 1170 LTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYA 1229
Query: 688 LSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSG 747
L +VK LHKHIL+AS L+K I+ TV FE+ SL+STFGWES+ SFPK LGD+IESL+G
Sbjct: 1230 LVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAG 1289
Query: 748 AIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRINGK 807
AIFVDSG NKEVVF SI+PLL MITPET++L P REL E CQK F + K
Sbjct: 1290 AIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKA-----KDF 1344
Query: 808 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASF 849
+ TVEV A F HT +DK+ AKK+A KEVL LK S
Sbjct: 1345 DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNSL 1386
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Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
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| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
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| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| 224101241 | 1468 | dicer-like protein [Populus trichocarpa] | 0.956 | 0.555 | 0.654 | 0.0 | |
| 255547506 | 1388 | ATP binding protein, putative [Ricinus c | 0.960 | 0.589 | 0.648 | 0.0 | |
| 224109196 | 1408 | dicer-like protein [Populus trichocarpa] | 0.956 | 0.578 | 0.659 | 0.0 | |
| 359476600 | 1394 | PREDICTED: endoribonuclease Dicer homolo | 0.949 | 0.580 | 0.620 | 0.0 | |
| 297735235 | 1340 | unnamed protein product [Vitis vinifera] | 0.949 | 0.603 | 0.620 | 0.0 | |
| 147833654 | 1296 | hypothetical protein VITISV_043738 [Viti | 0.949 | 0.624 | 0.620 | 0.0 | |
| 449442659 | 1393 | PREDICTED: endoribonuclease Dicer homolo | 0.990 | 0.605 | 0.543 | 0.0 | |
| 356533095 | 1414 | PREDICTED: endoribonuclease Dicer homolo | 0.938 | 0.565 | 0.563 | 0.0 | |
| 356532427 | 1421 | PREDICTED: endoribonuclease Dicer homolo | 0.938 | 0.562 | 0.575 | 0.0 | |
| 297832974 | 2033 | hypothetical protein ARALYDRAFT_317213 [ | 0.948 | 0.397 | 0.568 | 0.0 |
| >gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/834 (65%), Positives = 653/834 (78%), Gaps = 19/834 (2%)
Query: 32 YFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDN 91
YFKP P+ I+KE CTL+LP + P+QT+ QGNIKTLKQ ACLEACKKLH GALTDN
Sbjct: 626 YFKPAPRCIIDKETMTCTLHLPKSSPVQTICVQGNIKTLKQKACLEACKKLHVSGALTDN 685
Query: 92 LLPDVVVEEHDAQKHGNEPYDAEHPIYFPPELVNQCPQDTKITYHCYLIELKQNFNYDIP 151
L+PD+V+EE A+ GNE YD E PIY PPELV++ P++ K Y+CYLIEL QNF YDIP
Sbjct: 686 LVPDIVMEEAVAEDVGNERYDDEQPIYLPPELVSRGPRNLKTKYYCYLIELNQNFAYDIP 745
Query: 152 AHDIVLAVRTELESE-IKKVNFDLEVDRGRLTVNLKHLGKIQLTPDKVLLCRRFQIALFR 210
HD+VL VRTELES+ I+ + FDLE +RG LTVNL+++G I L VLLCRRFQI LF+
Sbjct: 746 VHDVVLVVRTELESDVIRSMGFDLEAERGLLTVNLRYIGDIDLERVLVLLCRRFQITLFK 805
Query: 211 VIMDHNLDKLNEILKGLWLRDNLEIDYLLLPA----SEQSIDWEPVASLSFPCDIGLKHH 266
V++DH+++KL E+L+GL L EIDY LLPA S+ SI+W P++S+ F + H
Sbjct: 806 VLLDHSVNKLKEVLEGLDLGSGAEIDYFLLPAFRSCSQPSINWAPISSVLF--SYKNEEH 863
Query: 267 KNCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGA 326
NCS NA VVQTK GP+C C++ NS+VCTPH+G IY ITGV LN NSL DGGA
Sbjct: 864 FNCSRNGNAHVVQTKCGPVCACVLQNSLVCTPHNGNIYCITGVFEDLNGNSLLKMGDGGA 923
Query: 327 ITYKKHYEER------------YGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSK 374
ITYK+++ +R +GIQL F++E LL G+ IF N L++CR++K++
Sbjct: 924 ITYKEYFAKRPMSDLKLTLDFRHGIQLLFNREPLLKGKHIFPVHNLLNRCRKQKEKASKN 983
Query: 375 ISFELPPELCRIIMGPMSLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPT 434
ELPPELC II+ P+S+ST YS+TF+PSIMHRL+SLL+AVNLK M DH +Q+V IP+
Sbjct: 984 THVELPPELCEIILSPISISTLYSYTFIPSIMHRLESLLIAVNLKKMHSDHYLQHVNIPS 1043
Query: 435 SKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNA 494
KVLEAITT KCQE F+LESLETLGDSFLKYAASQQLFK YQNHHEGLLS KKD+IISNA
Sbjct: 1044 MKVLEAITTNKCQENFNLESLETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNA 1103
Query: 495 ALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKT 554
ALC+ GC+HKL GFIR E FDPK+W+IPG GS L++ L RKIY+ GR+KVKSKT
Sbjct: 1104 ALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLSEEPLSKGRKIYIRGRRKVKSKT 1163
Query: 555 VADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRHLESLL 614
+ADVVEALIGA+LSTGGE L+F+D IGIKVDF+N PYER Q+QAE+ VNVR+LESLL
Sbjct: 1164 IADVVEALIGAYLSTGGEVTALLFMDWIGIKVDFMNTPYERHIQLQAEKFVNVRYLESLL 1223
Query: 615 NYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLT 674
NYSF DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLIT+++Y +YP +SPG LT
Sbjct: 1224 NYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYPGMSPGLLT 1283
Query: 675 DMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSF 734
D+RSASVNNDCYALS+VK GL +HILHAS +L+K I TV + SLESTFGWESET+F
Sbjct: 1284 DLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTFGWESETAF 1343
Query: 735 PKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHF 794
PK LGD+IESL+GAI VDSG NKEVVFESIRPLLEP+ITPET+RLQP RELNE CQ+ HF
Sbjct: 1344 PKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRELNELCQRQHF 1403
Query: 795 SMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848
KK + R A+VT+EV ANG +FKHT ADK TAKK+ASKEVLK+LK S
Sbjct: 1404 DYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKALKES 1457
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis] gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa] gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.947 | 0.581 | 0.555 | 2.6e-250 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.784 | 0.403 | 0.335 | 4.1e-109 | |
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.341 | 0.154 | 0.411 | 7.4e-84 | |
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.348 | 0.174 | 0.360 | 7.1e-73 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.308 | 0.141 | 0.364 | 2.4e-57 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.279 | 0.124 | 0.385 | 4.6e-57 | |
| UNIPROTKB|E9PU15 | 1908 | Dicer1 "Protein Dicer1" [Rattu | 0.279 | 0.124 | 0.385 | 4.6e-57 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.279 | 0.123 | 0.385 | 5.5e-57 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.279 | 0.123 | 0.385 | 5.5e-57 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.272 | 0.121 | 0.398 | 7.1e-57 |
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2309 (817.9 bits), Expect = 2.6e-250, Sum P(2) = 2.6e-250
Identities = 456/821 (55%), Positives = 582/821 (70%)
Query: 32 YFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDN 91
YFKP P+FD+NK+ G CTLYLP +CP++ V A+ N K LKQ CL+AC +LH++GAL+D+
Sbjct: 575 YFKPAPRFDVNKDQGSCTLYLPKSCPVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDH 634
Query: 92 LLPDVVVEEHDAQKHGNEPYDAEHPIYFPPELVNQCPQDTKITYHCYLIELKQNFNYDIP 151
L+PD+VV E +QK Y+ E P YFPPELV+Q + TYH YLI +K N +
Sbjct: 635 LVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFH 694
Query: 152 AHDIVLAVRTELESEIKKVNFDLEVDRGRLTVNLKHLGKIQLTPDKVLLCRRFQIALFRV 211
+D++L R LE +I +F LE RG + V L ++G LT ++VL CRRFQI LFRV
Sbjct: 695 LNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRV 754
Query: 212 IMDHNLDKLNEILKGLWLRDNLEIDYLLLPAS---EQS-IDWEPVASLSFPCDIGLKHHK 267
++DH+++ L E L GL LRD + +DYLL+P++ E S IDWE + S++ L+ H+
Sbjct: 755 LLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 814
Query: 268 NCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAI 327
NCST +R++ TK G CTC++ N++V TPH+G +Y GVL +LN NSL T+ + G
Sbjct: 815 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQ 874
Query: 328 TYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKISFELPPELCRII 387
TY ++YEER+GIQL F E LLNGR IF +YL +++K++E + ELPPELC +I
Sbjct: 875 TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVI 934
Query: 388 MGPMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKVLEAITTKKCQ 447
+ P+S+ YS+TF+PS+M R++S + V IPT KVLEAITTKKC+
Sbjct: 935 LSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKS-----IPKVNIPTIKVLEAITTKKCE 989
Query: 448 EGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPG 507
+ FHLESLETLGDSFLKYA QQLF+ HHEGLLS KKD +ISN LC+ GC KL G
Sbjct: 990 DQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQG 1049
Query: 508 FIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFL 567
FIR E F+PK WM+PG +S +Y L + +L R IYV R+ +K K+VADVVE+LIGA+L
Sbjct: 1050 FIRDECFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYL 1109
Query: 568 STGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEA 627
S GGE L+F++ +GIKVDF +R +QAE+LVNV ++ESLLNYSF D SLLVEA
Sbjct: 1110 SEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEA 1169
Query: 628 LTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYA 687
LTHGSYM+PEIPRCYQRLEFLGD+VLDYLIT +LY+KYP LSPG LTDMRSASVNN+CYA
Sbjct: 1170 LTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYA 1229
Query: 688 LSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSG 747
L +VK LHKHIL+AS L+K I+ TV FE+ SL+STFGWES+ SFPK LGD+IESL+G
Sbjct: 1230 LVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAG 1289
Query: 748 AIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRINGK 807
AIFVDSG NKEVVF SI+PLL MITPET++L P REL E CQK F + K A +
Sbjct: 1290 AIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSK--AKDFD-- 1345
Query: 808 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848
+ TVEV A F HT +DK+ AKK+A KEVL LK S
Sbjct: 1346 -SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PU15 Dicer1 "Protein Dicer1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 852 | |||
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 6e-39 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-38 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 1e-34 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 6e-31 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 4e-30 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-29 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 1e-25 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 9e-24 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 3e-22 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 3e-18 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 3e-17 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 4e-13 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 1e-12 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 2e-12 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 6e-12 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 2e-10 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-09 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 5e-09 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 8e-09 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 3e-06 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 7e-06 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 3e-05 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-39
Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 23/156 (14%)
Query: 622 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASV 681
SLL+EALTH SY +RLEFLGDAVL+ ++T YL+ K+P LS GDLT +RSA V
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 682 NNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDI 741
+N+ A + + GL K++ E E + G PK L D+
Sbjct: 61 SNETLARLARELGLGKYLRLGKGE-----------------EKSGGRLR----PKILADV 99
Query: 742 IESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E+L GAI++D G E + + LL P+I ++
Sbjct: 100 FEALIGAIYLDGG--FEAARKFLLRLLGPLIEEISL 133
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 100.0 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.94 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.94 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.93 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.93 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.93 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.91 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.91 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.89 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.89 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.88 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.88 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.88 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.86 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.86 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.83 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.81 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.75 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.74 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.67 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.5 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 99.41 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.21 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 99.18 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.86 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.82 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.8 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.78 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.76 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.76 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 98.17 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 98.04 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 97.89 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.72 | |
| PLN03202 | 900 | protein argonaute; Provisional | 97.58 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 97.5 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 97.39 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 95.65 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 95.52 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 95.35 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 94.44 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 89.73 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 87.39 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 86.24 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 85.91 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 84.27 | |
| PF11469 | 120 | Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 | 81.28 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=547.47 Aligned_cols=793 Identities=29% Similarity=0.373 Sum_probs=559.5
Q ss_pred CCCcchhhHHHHHhhcccccCCCcEEEEEec-----ccc---------CCCeEEEcC----------------CeEEEEE
Q 003062 1 MFDPSHTVCSFIQSRGRARMQNSDYLLMLKR-----YFK---------PTPKFDINK----------------EMGICTL 50 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~~~S~yi~m~e~-----~~~---------~~P~~~~~~----------------~~~~~~v 50 (852)
+||.|.++++|||+.||||...+.|+++.+. +.+ ++|.+...+ ..+.-+|
T Consensus 378 ~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v 457 (1606)
T KOG0701|consen 378 LFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTV 457 (1606)
T ss_pred eccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeE
Confidence 6899999999999999999999999998875 332 234443200 2345556
Q ss_pred EcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhcc----------------ccCCCCCCCCC
Q 003062 51 YLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDNLLPDVVVEEHDA----------------QKHGNEPYDAE 114 (852)
Q Consensus 51 ~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G~ldd~LlP~~~~~~~~~----------------~~~~~~~~~~~ 114 (852)
.||.++|.+ .-+.-+|.+||++|++||+++|.+++..... .-.++++....
T Consensus 458 ~~~~~~p~~-------------~~~~~~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~ 524 (1606)
T KOG0701|consen 458 VLPVNSPLK-------------MCIVGLCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQ 524 (1606)
T ss_pred EEecCchHH-------------HHHHHhHHHHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCCCCCccccccc
Confidence 666665544 2223399999999999999999988543211 01123444455
Q ss_pred CCccCCccccCCCCCCCcceEEEEEEeecCCC----cC----------CCCCceEEEEecCcCccccccccceeeeeCCe
Q 003062 115 HPIYFPPELVNQCPQDTKITYHCYLIELKQNF----NY----------DIPAHDIVLAVRTELESEIKKVNFDLEVDRGR 180 (852)
Q Consensus 115 ~~~~~~~~~~~~w~~~~~~~~~~~~i~l~~~~----~~----------~~~~~~~~llt~~~LP~~~~~~~~~Lf~~~~~ 180 (852)
|....+.++.+..+..+. +||.|++.+.-.. .. ......|++++-+++|.. +.|+.+..+|+
T Consensus 525 ~~k~~~~~~~~~~~~~~~-~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~~---~~~~~a~~sG~ 600 (1606)
T KOG0701|consen 525 YLKHIARERNDSVPKADQ-PCYLYVIGLELTMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPKI---PHFPVATRSGE 600 (1606)
T ss_pred ccchhHHHhcccccCCCC-ceeeeeeccceecCCchhcccccccccCchhhhhhhcccchhhhccc---ccccceeccCc
Confidence 666666776665554333 4677777653111 00 112457999999999985 58999999998
Q ss_pred EEEEEeeCc-ccccCHHHHHHHHHHHHHHHHHHhccccchhhHHhhhccccCCCCccEEEecCCCC------ccCccccc
Q 003062 181 LTVNLKHLG-KIQLTPDKVLLCRRFQIALFRVIMDHNLDKLNEILKGLWLRDNLEIDYLLLPASEQ------SIDWEPVA 253 (852)
Q Consensus 181 ~~v~l~~~~-~i~l~~e~l~~l~~Ft~~lf~~v~~~~~~~~~~~~~~~~~~~~~~~~yl~~Pl~~~------~iDw~~v~ 253 (852)
+++++.... ...+.+++++....|+..+|..+.+.-. +..-+.+......+.++|.+.. .|+|..++
T Consensus 601 ~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~------~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~ 674 (1606)
T KOG0701|consen 601 VKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAK------INLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLE 674 (1606)
T ss_pred hhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhc------cccccCCchhhHHHHhcccccccccchhhhHHHHHH
Confidence 888875432 2357788888889999999999988521 1112233556677888996521 78999888
Q ss_pred cccccccccCCCCCCCCcccccchhhccCCCcccccccCcEEEcCcCC---ceEEEEeecCCCCCCCCCCCCCCCcchHH
Q 003062 254 SLSFPCDIGLKHHKNCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSG---QIYYITGVLGHLNANSLFTRNDGGAITYK 330 (852)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~ 330 (852)
.+..+.......+.+ . -+...++..+++.+++++ |.| ..|++..|.....|+|.||. -.+-++.
T Consensus 675 ~iv~~~~~~~~~~~~-~--------~~~~~~f~~~~~~~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~g--~~~~~~~ 741 (1606)
T KOG0701|consen 675 AIVAPSDLMPIPSKD-E--------VRKAKYFDGEDSQDAVGM--YRNDDQPQFYVAEVLPLLAPSSLFPG--LDYETFN 741 (1606)
T ss_pred HHhCcccccCCCChh-h--------hhhhhhcccccchhhhhh--hhcccccceeeeeeeeeccchhcCCC--cchheee
Confidence 876544321111111 0 123446777888999888 433 25688999999999999983 3456888
Q ss_pred HHHHHHhCcccccCCceeEEEeeccccccccchhhhhccC-------CCCcc--eeecCcchhhhhcccCcHHHHHHhhh
Q 003062 331 KHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQR-------EPSKI--SFELPPELCRIIMGPMSLSTFYSFTF 401 (852)
Q Consensus 331 ~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~-------~~~~~--~~~L~PElC~~~~~p~~~~~~~~~~~ 401 (852)
.||..+|+..+++..||++.++....+.|++.++...... ..++. ..-+--++ ..+|.+++.|+.+-+
T Consensus 742 ~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~---~~h~~~~s~~~~~~~ 818 (1606)
T KOG0701|consen 742 EVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSL---IIHPALASLWRRAVC 818 (1606)
T ss_pred eeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccC---CCCcCcchhhhhhcc
Confidence 9999999999999999999999999999999888532110 00000 01122222 357888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH------------HHhh-cc------------------------------------------
Q 003062 402 VPSIMHRLQSLLLAVNLKN------------MLLD-HC------------------------------------------ 426 (852)
Q Consensus 402 lPsi~~rle~~l~a~~l~~------------~l~~-~~------------------------------------------ 426 (852)
+|.+++|++. .+...+. .+.. .|
T Consensus 819 ~p~~v~~v~~--tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 896 (1606)
T KOG0701|consen 819 LPEILYRVLL--TGALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQ 896 (1606)
T ss_pred Ccchheeecc--ccceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhh
Confidence 9999998753 1111100 0000 00
Q ss_pred ------------------------------------------c----c--------------------C-----------
Q 003062 427 ------------------------------------------M----Q--------------------N----------- 429 (852)
Q Consensus 427 ------------------------------------------~----~--------------------~----------- 429 (852)
+ . .
T Consensus 897 av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~ 976 (1606)
T KOG0701|consen 897 AVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPN 976 (1606)
T ss_pred hhhhhhhhhhhcccccccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCccccccc
Confidence 0 0 0
Q ss_pred ---------CCCC---------------HHHHHHHhccCCCCCCCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhH
Q 003062 430 ---------VTIP---------------TSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSV 485 (852)
Q Consensus 430 ---------~~~~---------------~~lll~AlT~~s~~~~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~ 485 (852)
..++ ..+|+||||++++.+.+++||||+|||++||++++.++|.+||+.+||+|+.
T Consensus 977 ~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~ 1056 (1606)
T KOG0701|consen 977 KRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSR 1056 (1606)
T ss_pred ccccccccccccccceeccccccccccchhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHH
Confidence 0011 2689999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccHHHHHHHHhCCccccccccccCCCCcccCCCCC--CCcccCc--c-------cccc---------cc---cc
Q 003062 486 KKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNS--GSYELND--H-------SLFN---------ER---KI 542 (852)
Q Consensus 486 ~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~--~~~~~~~--~-------~~~~---------~~---~~ 542 (852)
+|+.+++|.+|++.|...||++|++.+.|.|..|-.|+... +..|... + ++.. +. ..
T Consensus 1057 lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~ 1136 (1606)
T KOG0701|consen 1057 LRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDS 1136 (1606)
T ss_pred HHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcc
Confidence 99999999999999999999999999999997655554311 1112110 0 0000 00 01
Q ss_pred cccc--ccccccchhHHHHHHHHHHHhhcCChHHHH-----HhhhhcCccccCCCc------------------------
Q 003062 543 YVTG--RKKVKSKTVADVVEALIGAFLSTGGENVGL-----IFLDRIGIKVDFVNV------------------------ 591 (852)
Q Consensus 543 ~~~~--~~~~~~K~lADv~EAliGA~yl~~G~~~a~-----~~~~~l~~~~~~~~~------------------------ 591 (852)
...+ .++...|++||++|||+||+|+|+|...+. .+++|.++..++...
T Consensus 1137 ~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~l 1216 (1606)
T KOG0701|consen 1137 RSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRL 1216 (1606)
T ss_pred cccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHH
Confidence 1111 357889999999999999999999998888 888888766442100
Q ss_pred ----c---------------------------cch-------------------------------------h--cc---
Q 003062 592 ----P---------------------------YER-------------------------------------Q--FQ--- 598 (852)
Q Consensus 592 ----~---------------------------~~~-------------------------------------~--~~--- 598 (852)
. +++ + ..
T Consensus 1217 er~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~ 1296 (1606)
T KOG0701|consen 1217 ERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDL 1296 (1606)
T ss_pred HHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhccc
Confidence 0 000 0 00
Q ss_pred ----------------------------------------------c----------------Ch----hhHHhHHHHHH
Q 003062 599 ----------------------------------------------V----------------QA----ERLVNVRHLES 612 (852)
Q Consensus 599 ----------------------------------------------~----------------~~----~~~~~~~~le~ 612 (852)
+ +. .....+..+|.
T Consensus 1297 ~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~ 1376 (1606)
T KOG0701|consen 1297 NVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEE 1376 (1606)
T ss_pred ccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhc
Confidence 0 00 01123567889
Q ss_pred HcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHHHHHHHHH
Q 003062 613 LLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVK 692 (852)
Q Consensus 613 ~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~La~~a~~ 692 (852)
.+||.|.++.++.+|+||.||..+....||||||||||+|+++.|++|+|...+..+||.++++|+++|+|...|.+|++
T Consensus 1377 ~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~a~~av~ 1456 (1606)
T KOG0701|consen 1377 KLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVK 1456 (1606)
T ss_pred ccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccchhhHHh
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHHHHHHhhcccC
Q 003062 693 HGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMI 772 (852)
Q Consensus 693 ~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~~~~~~l~~~~ 772 (852)
.++|+|+.+.+..+...|..++....+.......+|.+....||+++|++|++.||||+|+|...+.+.. .+.+.
T Consensus 1457 ~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~----~~~a~- 1531 (1606)
T KOG0701|consen 1457 ADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIE----KFWAL- 1531 (1606)
T ss_pred hcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccceeecCcccccchHhh----cCcCC-
Confidence 9999999999999999999999988776665667999999999999999999999999999954332221 11111
Q ss_pred CcccccCChhhHHHHHHHhCCCceeeEEee--ecCCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhC
Q 003062 773 TPETMRLQPARELNEYCQKHHFSMKKTVAP--RINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASF 849 (852)
Q Consensus 773 ~~~~~~~~P~~~L~e~~~~~~~~~~~~~~~--~~~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~ 849 (852)
....|++++.+...+. ..|.+.. ...+..+.+|.|..+|. . .|.|.+...||..|++.|++.|+...
T Consensus 1532 ----p~~s~~~E~~~~h~~~---~~~~~~~k~~d~~~~~~tv~~~~~~~--~-~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1532 ----PPRSPIRELLELHPER---ALFGKCEKVADAGKVRVTVDVFNKEV--F-AGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ----CCccchhhhcccccee---eccchhhhhhhccceEEEEEecccch--h-hhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 1233334333322211 1111111 11233334444444443 3 68899999999999999998887653
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 852 | ||||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-36 | ||
| 3c4b_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 4e-35 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 4e-32 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 1e-14 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 2e-14 | ||
| 3o2r_D | 144 | Structural Flexibility In Region Involved In Dimer | 6e-14 | ||
| 1o0w_A | 252 | Crystal Structure Of Ribonuclease Iii (Tm1102) From | 5e-12 | ||
| 1jfz_A | 154 | Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En | 7e-10 | ||
| 1i4s_A | 147 | Crystal Structure Of Rnase Iii Endonuclease Domain | 7e-10 | ||
| 1yyk_A | 221 | Crystal Structure Of Rnase Iii From Aquifex Aeolicu | 9e-10 | ||
| 1yz9_A | 221 | Crystal Structure Of Rnase Iii Mutant E110q From Aq | 2e-09 | ||
| 1yyo_A | 221 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-09 | ||
| 1rc7_A | 220 | Crystal Structure Of Rnase Iii Mutant E110k From Aq | 3e-09 | ||
| 2a11_A | 242 | Crystal Structure Of Nuclease Domain Of Ribonuclase | 3e-09 | ||
| 2ez6_A | 221 | Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 | 3e-09 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 1e-05 | ||
| 2ffl_A | 756 | Crystal Structure Of Dicer From Giardia Intestinali | 3e-04 |
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
| >pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 | Back alignment and structure |
| >pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 | Back alignment and structure |
| >pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 | Back alignment and structure |
| >pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 | Back alignment and structure |
| >pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 | Back alignment and structure |
| >pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 | Back alignment and structure |
| >pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 | Back alignment and structure |
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
| >pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 7e-72
Identities = 98/260 (37%), Positives = 134/260 (51%), Gaps = 18/260 (6%)
Query: 602 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 661
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +L
Sbjct: 10 HLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHL 69
Query: 662 YNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVD------ 715
Y SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ V
Sbjct: 70 YEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKN 129
Query: 716 -----SFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEP 770
E E E + PKA+GDI ESL+GAI++DSG + EVV++ P+++P
Sbjct: 130 EMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQP 189
Query: 771 MITPETMRL--QPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADA 828
+I + + P REL E + +GK VTVEV G K
Sbjct: 190 LIEKFSANVPRSPVRELLEMEPETA--KFSPAERTYDGKVRVTVEVVGKG---KFKGVGR 244
Query: 829 DKETAKKVASKEVLKSLKAS 848
AK A++ L+SLKA+
Sbjct: 245 SYRIAKSAAARRALRSLKAN 264
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 100.0 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 100.0 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 100.0 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 100.0 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 100.0 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 100.0 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 100.0 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.97 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.97 | |
| 3o2r_A | 170 | Ribonuclease III; structural genomics, center for | 99.94 | |
| 3n3w_A | 248 | Ribonuclease III; nuclease domain, ribonuclase III | 99.92 | |
| 2nug_A | 221 | Ribonuclease III, RNAse III; dsRNA, RNA interferen | 99.91 | |
| 3rv1_A | 246 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.91 | |
| 3c4b_A | 265 | Endoribonuclease dicer; RNAse, dsRNA binding prote | 99.91 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 99.9 | |
| 1o0w_A | 252 | Ribonuclease III, RNAse III; TM1102, structural ge | 99.89 | |
| 2a11_A | 242 | Ribonuclease III, RNAse III; nuclease domain, stru | 99.89 | |
| 3rv0_A | 341 | K. polysporus DCR1; RNAse III enzyme, RNA binding | 99.88 | |
| 2kou_A | 102 | Dicer-like protein 4; ATP-binding, endonuclease, h | 99.76 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.7 | |
| 1u61_A | 138 | Hypothetical protein; structural genomics, PSI, pr | 99.69 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.58 | |
| 2gsl_A | 137 | Hypothetical protein; alpha-helical protein, struc | 99.58 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.56 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.48 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.46 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 99.09 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 99.05 | |
| 1x48_A | 88 | Interferon-induced, double-stranded RNA- activated | 99.05 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 99.03 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 99.03 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 99.01 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 99.0 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 99.0 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 98.98 | |
| 1x49_A | 97 | Interferon-induced, double-stranded RNA- activated | 98.97 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 98.96 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 98.96 | |
| 1ekz_A | 76 | DSRBDIII, maternal effect protein (staufen); struc | 98.91 | |
| 1t4n_A | 94 | Ribonuclease III; DSRBD, RNA-binding, hydrolase; N | 98.88 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 98.86 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 98.86 | |
| 2l33_A | 91 | Interleukin enhancer-binding factor 3; structural | 98.84 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 98.83 | |
| 1t4o_A | 117 | Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro | 98.8 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 98.73 | |
| 2dmy_A | 97 | Spermatid perinuclear RNA-binding protein; DSRM do | 98.72 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 98.71 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 98.68 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 98.55 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 98.52 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 98.51 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 98.48 | |
| 1qu6_A | 179 | Protein kinase PKR; dsRNA-binding domain, solution | 98.28 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 98.22 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 98.03 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 97.76 | |
| 2yt4_A | 232 | Protein DGCR8; DSRBD, RNA binding domain, RNA bind | 97.64 | |
| 2l3j_A | 236 | Double-stranded RNA-specific editase 1; editing, d | 97.62 | |
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 97.38 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 95.57 | |
| 1uil_A | 113 | Double-stranded RNA-binding motif; structural geno | 92.47 | |
| 2l2n_A | 103 | Hyponastic leave 1; DSRBD, miRNA, RNA binding prot | 91.6 | |
| 1whq_A | 99 | RNA helicase A; double-stranded RNA binding domain | 91.56 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 90.71 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 90.62 | |
| 3adg_A | 73 | F21M12.9 protein; HYL1, miRNA processing mechanism | 90.33 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 90.18 | |
| 2cpn_A | 89 | TAR RNA-binding protein 2; double-stranded RNA bin | 89.93 | |
| 3adl_A | 88 | RISC-loading complex subunit tarbp2; TRBP2, miRNA | 89.22 | |
| 1di2_A | 69 | XLRBPA, double stranded RNA binding protein A; pro | 88.41 | |
| 2db2_A | 119 | KIAA0890 protein; DSRM domain, structural genomics | 88.3 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 88.29 | |
| 3adj_A | 76 | F21M12.9 protein; HYL1, miRNA processing, RNA bind | 88.19 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 87.86 | |
| 2dix_A | 84 | Interferon-inducible double stranded RNA- dependen | 87.66 | |
| 2b7v_A | 71 | Double-stranded RNA-specific editase 1; RNA editin | 87.44 | |
| 2b7t_A | 73 | Double-stranded RNA-specific editase 1; RNA editin | 87.31 | |
| 1uhz_A | 89 | Staufen (RNA binding protein) homolog 2; DSRM, sta | 87.27 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 87.06 | |
| 1x47_A | 98 | DGCR8 protein; structural genomics, DSRM domain, N | 86.13 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 85.39 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 85.2 | |
| 2khx_A | 85 | Ribonuclease 3; drosha, RNA binding domain, hydrol | 84.09 | |
| 3llh_A | 90 | RISC-loading complex subunit tarbp2; DSRBD, DSRM, | 84.02 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 83.47 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 82.83 | |
| 3p1x_A | 75 | Interleukin enhancer-binding factor 3; structural | 81.42 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 80.94 | |
| 1whn_A | 128 | Hypothetical protein riken cDNA 2310016K04; double | 80.61 | |
| 2ljh_A | 114 | Double-stranded RNA-specific editase ADAR; DSRBD, | 80.39 |
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-83 Score=760.13 Aligned_cols=532 Identities=22% Similarity=0.275 Sum_probs=414.3
Q ss_pred CceEEEEecCcCccccccccceeeeeCCeEEEEEe-eCccc-ccCHHHHHHHHHHHHHHHHHHhccc---cchhhHHhhh
Q 003062 152 AHDIVLAVRTELESEIKKVNFDLEVDRGRLTVNLK-HLGKI-QLTPDKVLLCRRFQIALFRVIMDHN---LDKLNEILKG 226 (852)
Q Consensus 152 ~~~~~llt~~~LP~~~~~~~~~Lf~~~~~~~v~l~-~~~~i-~l~~e~l~~l~~Ft~~lf~~v~~~~---~~~~~~~~~~ 226 (852)
+..+.|++.++||.. +.|+||.++|.+.|++. +++++ .+|++|++.+++||.+||+.+++.. +.+++..+..
T Consensus 18 ~~~~~~l~~~~l~~~---~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~~ 94 (756)
T 2qvw_A 18 PSHWLLLLDTHLGTL---PGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPH 94 (756)
T ss_dssp EEEEEEEESSCCCSC---CCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCCG
T ss_pred cceeeeeecCCCCCC---CCceeecCCCceeEEEEeecCCccccCHHHHHHHHHHHHHHHHHHhcccchhhhhccccccc
Confidence 478999999999985 58999999998888888 77776 9999999999999999999998832 1121122111
Q ss_pred ------ccccCCCCc-cEEEecCCCC--ccCccccccccccccccCCCCCCCCcccccchhhccCCCcccccccCcEEEc
Q 003062 227 ------LWLRDNLEI-DYLLLPASEQ--SIDWEPVASLSFPCDIGLKHHKNCSTMSNARVVQTKSGPLCTCMIYNSVVCT 297 (852)
Q Consensus 227 ------~~~~~~~~~-~yl~~Pl~~~--~iDw~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 297 (852)
.+..+.... .|+|||+... .|||..+........ ..... .....++..+.++++|++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~Yll~Pl~~~~~~iDw~~v~~s~~~~~--~~~~~---------~~~~~d~~~~~~~l~g~vV~t 163 (756)
T 2qvw_A 95 NEYTFPRFISNPPQFATLAFLPLLSPTSPLDLRALMVTAQLMC--DAKRL---------SDEYTDYSTLSASLHGRMVAT 163 (756)
T ss_dssp GGSSSTTCCCCCSCCCCEEEEEESSTTCCCCSHHHHHHHHHHH--TCCCG---------GGC------CTTTSTTCEEEE
T ss_pred cccccccccCCCcccceEEEEeCCCCCCceehhhhhhhhhhcc--ccCCC---------ccccccchhhHHHhCCCEEec
Confidence 112233444 8999998753 899998853211000 00000 011345556788999999999
Q ss_pred CcCC-ceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhhhccCCCCcce
Q 003062 298 PHSG-QIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKIS 376 (852)
Q Consensus 298 ~~~~-~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~~~~~~~ 376 (852)
+||| ++|+|++|++|+||.|+||.+ +..+||.+||++|||++|.+++||||.++++++..|+..+.... .++.....
T Consensus 164 ~ynn~r~Y~i~~id~d~~P~S~F~~~-~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~~~~~-~~~~~~~~ 241 (756)
T 2qvw_A 164 PEISWSLYVVLGIDSTQTSLSYFTRA-NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGS-WDDLAPKL 241 (756)
T ss_dssp TTTTTEEEEEEEEEEEEETTSEEEET-TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCCSTTC--CCSCSSC
T ss_pred CCCCceEEEEEEecCCCCCCCcCCCC-CCCCCHHHHHHHHcCcccccCCCCeEEEEecccccccccccccc-cccCCccc
Confidence 9999 899999999999999999964 36789999999999999999999999999997666664432211 11223345
Q ss_pred eecCcchhhhhcccCcHHHHH--HhhhhhhHHHHHHHHHHHHH-HHHHHhhccccCCCCCHHHHHHHhccCCCCCC----
Q 003062 377 FELPPELCRIIMGPMSLSTFY--SFTFVPSIMHRLQSLLLAVN-LKNMLLDHCMQNVTIPTSKVLEAITTKKCQEG---- 449 (852)
Q Consensus 377 ~~L~PElC~~~~~p~~~~~~~--~~~~lPsi~~rle~~l~a~~-l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~---- 449 (852)
++||||+|.+ +|+|+++|+ ++.+||||+||||++++|.+ ++. .|+....|+. .+++|||++++.+.
T Consensus 242 v~L~PELC~v--t~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~----~~p~~~~i~~-~~leAlT~~~~~~~g~~~ 314 (756)
T 2qvw_A 242 RFLPPELCLL--LPDEFDLIRVQALQFLPEIAKHICDIQNTICALDK----SFPDCGRIGG-ERYFAITAGLRLDQGRGR 314 (756)
T ss_dssp EEECTTTCEE--CCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG----GSCCCSCCHH-HHHHHHHHHHBCSCCBTT
T ss_pred eeeCHHHhee--ecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----cCCcccccCH-HHHHHHhhhhhhhhcccc
Confidence 8999999966 666666666 99999999999999999976 433 3444433443 67789988776543
Q ss_pred -----------------CCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhCCcccccccc
Q 003062 450 -----------------FHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512 (852)
Q Consensus 450 -----------------~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~ 512 (852)
.|||||||||||||++++|.+||.+||+.+||+||.+|+.+|||++|+++|+++||++||+..
T Consensus 315 ~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~ 394 (756)
T 2qvw_A 315 GLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFS 394 (756)
T ss_dssp BSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCC
T ss_pred chhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccC
Confidence 389999999999999999999999999999999999999999999999999999999999873
Q ss_pred ccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhhc-CChHHHHHhhhhc---------
Q 003062 513 PFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLST-GGENVGLIFLDRI--------- 582 (852)
Q Consensus 513 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~-~G~~~a~~~~~~l--------- 582 (852)
++. . ..+|++||+|||+|||+|+| +|++.|.+|+..+
T Consensus 395 ---------~~e--------------------~----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~ 441 (756)
T 2qvw_A 395 ---------NNL--------------------V----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKT 441 (756)
T ss_dssp ---------SCC--------------------------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC
T ss_pred ---------CCC--------------------C----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhccc
Confidence 222 0 25789999999999999999 9999888775322
Q ss_pred ------------------------------------------------------------------CccccCCC-----c
Q 003062 583 ------------------------------------------------------------------GIKVDFVN-----V 591 (852)
Q Consensus 583 ------------------------------------------------------------------~~~~~~~~-----~ 591 (852)
|+++.+.. .
T Consensus 442 ~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~ 521 (756)
T 2qvw_A 442 VGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSG 521 (756)
T ss_dssp ---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccchHhHHhhcCCcccccccccccc
Confidence 11100000 0
Q ss_pred c----------------------------c------------------chhccc------------ChhhHHhHHHHHHH
Q 003062 592 P----------------------------Y------------------ERQFQV------------QAERLVNVRHLESL 613 (852)
Q Consensus 592 ~----------------------------~------------------~~~~~~------------~~~~~~~~~~le~~ 613 (852)
+ + +++.+. .......+..+|++
T Consensus 522 ~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~ 601 (756)
T 2qvw_A 522 PGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKI 601 (756)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHH
T ss_pred ccccchhhhHHHHhhcCceeccccccccccccccccccccCCchhhhhcccccCccccccccccccchhhhhHHHHHHHH
Confidence 0 0 000000 00012347899999
Q ss_pred cCcccCC--------------------------HHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCC
Q 003062 614 LNYSFRD--------------------------PSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPT 667 (852)
Q Consensus 614 lgy~F~~--------------------------~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~ 667 (852)
|||+|+| +.||.+||||+| ||||||||||||+++|++|||.+||+
T Consensus 602 lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S---------neRLEfLGDaVL~l~vs~~L~~~~p~ 672 (756)
T 2qvw_A 602 LAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV---------YQKLELLGDAFLKCSLALHLHALHPT 672 (756)
T ss_dssp HSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG---------GHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc---------chHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999 899999999999 89999999999999999999999999
Q ss_pred CCcchHHHHHHHhcChHHHHHHHHHcC--CchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHH
Q 003062 668 LSPGDLTDMRSASVNNDCYALSSVKHG--LHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESL 745 (852)
Q Consensus 668 ~~~~~Lt~~r~~lv~n~~La~~a~~~g--L~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAl 745 (852)
+++|.||.+|+++|||++||.+|+++| |++||+.+.++. ...+|++||+|||+
T Consensus 673 ~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~-------------------------~~~~kilaD~~EAl 727 (756)
T 2qvw_A 673 LTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI-------------------------QPDSKVYGDTFEAI 727 (756)
T ss_dssp CCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC-------------------------CTTCSHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhh-------------------------cCCccHHHHHHHHH
Confidence 999999999999999999999999999 999999876531 24689999999999
Q ss_pred hheeeeeCCCCHHHHHHHHHHhhcccCCcc
Q 003062 746 SGAIFVDSGCNKEVVFESIRPLLEPMITPE 775 (852)
Q Consensus 746 iGAi~~DsG~~~~~v~~~~~~~l~~~~~~~ 775 (852)
|||||+|+|+ +.|++|+.+++.|.+..+
T Consensus 728 iGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 728 LAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred HHHHHHhCCH--HHHHHHHHHHHHHHhhcc
Confidence 9999999986 689999999999887643
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* | Back alignment and structure |
|---|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A | Back alignment and structure |
|---|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
| >1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 | Back alignment and structure |
|---|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
| >2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A | Back alignment and structure |
|---|
| >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A | Back alignment and structure |
|---|
| >2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A | Back alignment and structure |
|---|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B | Back alignment and structure |
|---|
| >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A | Back alignment and structure |
|---|
| >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 | Back alignment and structure |
|---|
| >2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 852 | ||||
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 8e-21 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 7e-18 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 2e-14 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 6e-09 | |
| d1whna_ | 128 | d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, | 2e-04 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 3e-04 | |
| d2dixa1 | 73 | d.50.1.1 (A:7-79) Interferon-inducible double stra | 4e-04 | |
| d1x48a1 | 76 | d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p | 0.002 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 87.6 bits (216), Expect = 8e-21
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 30/163 (18%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 5 LEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNKR 61
Query: 670 PGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWE 729
G L+ +++ ++ + + L + K LHK I ++ + I
Sbjct: 62 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII------------------ 103
Query: 730 SETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMI 772
GD+ E+L A+++DSG + E L + I
Sbjct: 104 ---------GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 137
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 100.0 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.97 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.94 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.93 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.79 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.75 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.05 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.04 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.03 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.0 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.0 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.0 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.0 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.99 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.94 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.89 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.87 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.79 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.78 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.65 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.64 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.59 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 98.52 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.32 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.29 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 98.26 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 95.62 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 95.39 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 93.38 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 92.77 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 88.94 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 87.23 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 86.95 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 85.89 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 85.15 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 84.39 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.37 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 82.77 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 82.56 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 81.79 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 81.44 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 81.13 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 80.79 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 80.36 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 80.03 |
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=7.7e-34 Score=271.22 Aligned_cols=137 Identities=33% Similarity=0.502 Sum_probs=127.3
Q ss_pred HHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHHH
Q 003062 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCY 686 (852)
Q Consensus 607 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~L 686 (852)
++.||++|||+|+|++||.+||||+||. ...+|||||||||+||+++++.|+|.+||+.++|.||.+|+.+|||++|
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~---~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~L 78 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYS---KKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 78 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTC---SSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHCCccCCHHHHHHHhcCcCcC---CCcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHh
Confidence 5789999999999999999999999997 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHHHHHH
Q 003062 687 ALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRP 766 (852)
Q Consensus 687 a~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~~~~~ 766 (852)
|.+|.++||++||+.+.+ ...+|++||+|||+|||||+|+|.+.+.|++|+.+
T Consensus 79 a~~a~~lgl~~~i~~~~~---------------------------~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~ 131 (148)
T d2nuga1 79 NLLAQKLELHKFIRIKRG---------------------------KINETIIGDVFEALWAAVYIDSGRDANFTRELFYK 131 (148)
T ss_dssp HHHHHTTTGGGTCBSCTT---------------------------CCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHHhccc---------------------------cchhhhhHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence 999999999999987653 24579999999999999999999999999999999
Q ss_pred hhcccCC
Q 003062 767 LLEPMIT 773 (852)
Q Consensus 767 ~l~~~~~ 773 (852)
++.|.+.
T Consensus 132 l~~~~i~ 138 (148)
T d2nuga1 132 LFKEDIL 138 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|