Citrus Sinensis ID: 003080


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850
MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRPKPKIN
ccccEEEEcccEEEEEEEEcccccccccccHHHHHHHHHHccHHcccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHcccccccccccccccccccccccHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccEEEEEEEEEEEccccccccccccHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHcccccEEEcccEEEEEEEEEEcHHHHHHHHHHccccccccccccccccEEEEEEEEEEccccccccccccccccccEEEEEEcccccEEcEEEEccEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEHHHHHHHHHHEEEEEcccccccccc
ccEcEEEEEccEEEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccEEcccccccccccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccEcEcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHcEEEEEccccEEEEEccccccccccccccccEEEccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHccccccEEEEEEEEEEccccHHHHHHHHHHHHHcccccccccccEEEEEHHHccHHHHHHHHHHHccccHcccccccccEEEEEEEEEEcccccEEEccccEEEEcccEEEEEEEcccccEEEEEEcccEEEEccccHHHHHHHHHHHHHHccccccccccHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccc
mevdsmylpvpvnfifigfegngnqdfqlhPDELERWFLKIDHIfehtrvppigevlapfyrtsvdkvqrhhlptishinYNFSVHAIQMGEKVTSVFEHAIKVLArkddvstnrddvdaLWQVDVSMMDVLFTSLVDYLQLENAynifilnpkhekrarygyrrglsdseITFLKENKDLQTKIlqsgnipesILALDKIrrplyekhpmmkfswtiaedtdtaewyNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKElksgdlsnlhaecltdswignnrwafidltagpfswgpavggegvrtelslpnvgktigaveeiseDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAfkhckgrkVKLALCEELDERMQDLKNELQsfegeeydenHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGsmrhvispsiadgafhyyETISFQLFFITQEKVRQVKQLPVNLKSLMDGLsslllpsqkpvfsqrmltlsedPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMndrdslkgahahsrstlevpifwfihgdpllvdkHYQAKALSDMVIVVQseepsweshlqcNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWiwsvgcnpfsitsqgwhisqfqSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLhpihctrdrkvdvefdlTTIPAFLIVLGILYVllkprrpkpkin
MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVlarkddvstnrdDVDALWQVDVSMMDVLFTSLVDYLQLENAYNifilnpkhekrARYGYRRGLSDSEITFLKENKDLQTkilqsgnipesilALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEgvrtelslpnvGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELqsfegeeydenHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILyvllkprrpkpkin
MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGknedlkfllekelkSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPalamafsvarraaavPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRPKPKIN
*****MYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAV*************DAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEEL***************************IEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRM*************RSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLK*********
***DSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSV******HLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDD**********LWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKD*******************KIR***YEKHPM**********TDTAEWYNICLDPLNNVEKFYR***T*DIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGA**************DAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDL********************IEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVR***QLPVNLKSLMD***********PVFSQRMLTLSEDPALAM*******************YRKTVRSYVDSAILQYQL******************TLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPS***********LLWDLRSPIKAALASVSEHLAGLLPLHLVY****ETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEK****FQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRPKP***
MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMND**********SRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRPKPKIN
MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRP*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
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MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPFYRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDALWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGDKDHQAIDILLAEIDIYELFAFKHCKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxEYDENHKRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALAMAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEVPIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALASVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIISTLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYADAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVLLKPRRPKPKIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query850
359483090 980 PREDICTED: uncharacterized protein LOC10 1.0 0.867 0.841 0.0
255573801 985 conserved hypothetical protein [Ricinus 0.962 0.830 0.852 0.0
224087367949 predicted protein [Populus trichocarpa] 0.998 0.894 0.813 0.0
449442649 957 PREDICTED: uncharacterized protein LOC10 0.997 0.886 0.794 0.0
297793327945 hypothetical protein ARALYDRAFT_918999 [ 1.0 0.899 0.777 0.0
42568619945 uncharacterized protein [Arabidopsis tha 1.0 0.899 0.779 0.0
9759536932 unnamed protein product [Arabidopsis tha 0.975 0.889 0.748 0.0
356495039948 PREDICTED: uncharacterized protein LOC10 0.997 0.894 0.769 0.0
356527439 956 PREDICTED: uncharacterized protein LOC10 0.997 0.887 0.758 0.0
297745112 1177 unnamed protein product [Vitis vinifera] 0.810 0.585 0.850 0.0
>gi|359483090|ref|XP_002274115.2| PREDICTED: uncharacterized protein LOC100255062 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1524 bits (3947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/851 (84%), Positives = 790/851 (92%), Gaps = 1/851 (0%)

Query: 1   MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPF 60
           +EVDS++LPVPVNFIFIGFEG GN +F+LHP+ELERWF KIDHIF HTRVP IGEVL PF
Sbjct: 130 LEVDSIHLPVPVNFIFIGFEGKGNHEFKLHPEELERWFTKIDHIFGHTRVPHIGEVLTPF 189

Query: 61  YRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDA 120
           Y+ S+DKVQRHHLP +SHINYN SVHAIQM EKVTSVF++AI VLAR+DDVS NR+D D 
Sbjct: 190 YKISIDKVQRHHLPIVSHINYNVSVHAIQMSEKVTSVFDNAINVLARRDDVSGNREDEDT 249

Query: 121 LWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHE-KRARYGYRRGLSDSEITFLKENK 179
            WQVDV MMDVLF+SLVDYLQLENAYNIF+LNPKH+ K+A+YGYRRGLS+SEI FLKENK
Sbjct: 250 FWQVDVDMMDVLFSSLVDYLQLENAYNIFVLNPKHDGKKAKYGYRRGLSESEINFLKENK 309

Query: 180 DLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVE 239
           DLQTKILQSG IPES+LAL+KI+RPLYEKHPM KF+WTI EDTDT EW NICLD LNNV+
Sbjct: 310 DLQTKILQSGTIPESVLALEKIKRPLYEKHPMEKFAWTITEDTDTVEWSNICLDALNNVD 369

Query: 240 KFYRGKETADIIQSKVLQLLKGKNEDLKFLLEKELKSGDLSNLHAECLTDSWIGNNRWAF 299
           +FY+GK+TADII  KV+Q+LKGKNED+K L  KELKSGDLS +HAECLTD+WIG +RWAF
Sbjct: 370 RFYQGKDTADIIHGKVIQILKGKNEDMKQLFGKELKSGDLSGIHAECLTDTWIGKDRWAF 429

Query: 300 IDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGD 359
           IDL+AGPFSWGPAVGGEGVRTELSLPNV KTIGAV EISEDEAEDRLQDAIQEKFA FGD
Sbjct: 430 IDLSAGPFSWGPAVGGEGVRTELSLPNVKKTIGAVAEISEDEAEDRLQDAIQEKFAAFGD 489

Query: 360 KDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENH 419
           KDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERM+DLKNELQSFEG EYDE+H
Sbjct: 490 KDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMRDLKNELQSFEGGEYDESH 549

Query: 420 KRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFH 479
           +RKA++AL RME+WNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRH+ISPSIADGAFH
Sbjct: 550 RRKAVDALNRMESWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHIISPSIADGAFH 609

Query: 480 YYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPALA 539
           +Y+ ISFQLFFITQEKVR +KQLPV+LK+L +GLSSLLLPSQK +FSQ ML LSEDPALA
Sbjct: 610 FYDKISFQLFFITQEKVRHIKQLPVDLKALTEGLSSLLLPSQKAMFSQHMLPLSEDPALA 669

Query: 540 MAFSVARRAAAVPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEV 599
           MAFSVARRAAAVP+LLVNGTYRKT+R+Y+DS+ILQ+QLQR+ND  SLKG HAHSRSTLEV
Sbjct: 670 MAFSVARRAAAVPLLLVNGTYRKTIRTYLDSSILQHQLQRLNDHGSLKGMHAHSRSTLEV 729

Query: 600 PIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALA 659
           PIFWF+H +PLLVDKHYQAKALSDMVIVVQSE  SWESHLQCNG+SLLWDLR PIKAALA
Sbjct: 730 PIFWFLHSEPLLVDKHYQAKALSDMVIVVQSETSSWESHLQCNGKSLLWDLRRPIKAALA 789

Query: 660 SVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIIS 719
           + SEHLAGLLPLHLVYSQAHETAIEDW WSVGCNP SITSQGWHISQFQSDT+ARSYII+
Sbjct: 790 AASEHLAGLLPLHLVYSQAHETAIEDWAWSVGCNPLSITSQGWHISQFQSDTVARSYIIT 849

Query: 720 TLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYA 779
           TLEESIQ VNSAIH L+ME TTE+TFKLFQSQER+LVNKYN+VV LWRRI+TVTG+LRY 
Sbjct: 850 TLEESIQLVNSAIHRLVMEHTTEQTFKLFQSQERDLVNKYNHVVGLWRRIATVTGELRYV 909

Query: 780 DAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVL 839
           DAMR LYTLEDASKGFV QVNA+I LLHPIHCTR RKVDVEFD+TTIPAFLIVLG+L+++
Sbjct: 910 DAMRLLYTLEDASKGFVGQVNASITLLHPIHCTRQRKVDVEFDMTTIPAFLIVLGVLWLV 969

Query: 840 LKPRRPKPKIN 850
           L+PRRPKPKIN
Sbjct: 970 LRPRRPKPKIN 980




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573801|ref|XP_002527820.1| conserved hypothetical protein [Ricinus communis] gi|223532794|gb|EEF34572.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224087367|ref|XP_002308138.1| predicted protein [Populus trichocarpa] gi|222854114|gb|EEE91661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442649|ref|XP_004139093.1| PREDICTED: uncharacterized protein LOC101207480 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297793327|ref|XP_002864548.1| hypothetical protein ARALYDRAFT_918999 [Arabidopsis lyrata subsp. lyrata] gi|297310383|gb|EFH40807.1| hypothetical protein ARALYDRAFT_918999 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42568619|ref|NP_200618.3| uncharacterized protein [Arabidopsis thaliana] gi|332009614|gb|AED96997.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759536|dbj|BAB11002.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495039|ref|XP_003516388.1| PREDICTED: uncharacterized protein LOC100779643 [Glycine max] Back     alignment and taxonomy information
>gi|356527439|ref|XP_003532318.1| PREDICTED: uncharacterized protein LOC100800000 [Glycine max] Back     alignment and taxonomy information
>gi|297745112|emb|CBI38951.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query850
TAIR|locus:2155846945 AT5G58100 [Arabidopsis thalian 1.0 0.899 0.750 0.0
DICTYBASE|DDB_G02850831020 DDB_G0285083 [Dictyostelium di 0.295 0.246 0.323 1.1e-59
TAIR|locus:2098423687 AT3G28720 "AT3G28720" [Arabido 0.324 0.401 0.247 3.2e-12
DICTYBASE|DDB_G0273745808 DDB_G0273745 "transmembrane pr 0.262 0.275 0.236 4.3e-10
DICTYBASE|DDB_G0273189808 DDB_G0273189 "transmembrane pr 0.262 0.275 0.236 4.3e-10
DICTYBASE|DDB_G0279945641 DDB_G0279945 [Dictyostelium di 0.44 0.583 0.218 9.6e-10
TAIR|locus:2155846 AT5G58100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3446 (1218.1 bits), Expect = 0., P = 0.
 Identities = 639/851 (75%), Positives = 738/851 (86%)

Query:     1 MEVDSMYLPVPVNFIFIGFEGNGNQDFQLHPDELERWFLKIDHIFEHTRVPPIGEVLAPF 60
             MEVDS+YLPVPVNFIFIGFEG GNQDF+L P+ELERWF K+DH+FEHTRVP I EVL PF
Sbjct:    95 MEVDSVYLPVPVNFIFIGFEGKGNQDFKLRPEELERWFNKLDHMFEHTRVPQIKEVLNPF 154

Query:    61 YRTSVDKVQRHHLPTISHINYNFSVHAIQMGEKVTSVFEHAIKVLARKDDVSTNRDDVDA 120
             Y+ +++K  +HHLP IS +NYNFSVHAIQMGEKVTSV EHAIKVLARKDDV+TN+D+  A
Sbjct:   155 YKINIEKEVQHHLPIISRVNYNFSVHAIQMGEKVTSVIEHAIKVLARKDDVATNKDEESA 214

Query:   121 LWQVDVSMMDVLFTSLVDYLQLENAYNIFILNPKHE-KRARYGYRRGLSDSEITFLKENK 179
             L QVD  MM+ +FTSLV+Y  LE+AYN+FILNPKH+ K+A+YGYRRG S+SEI++LKENK
Sbjct:   215 LLQVDAEMMEFIFTSLVEYFHLEDAYNLFILNPKHDNKKAKYGYRRGFSESEISYLKENK 274

Query:   180 DLQTKILQSGNIPESILALDKIRRPLYEKHPMMKFSWTIAEDTDTAEWYNICLDPLNNVE 239
             ++   +LQSG   E+ILA D +R+PLY++HPM+KFSWT AE+TDTAEW+N C D LN +E
Sbjct:   275 EILKNLLQSGKPSENILAFDMVRKPLYDRHPMLKFSWTNAEETDTAEWFNACQDALNKLE 334

Query:   240 KFYRGKETADIIQSKVLQLLKGXXXXXXXXXXXXXXSGDLSNLHAECLTDSWIGNNRWAF 299
             +   GK+ A++IQSKVLQLL+G              +GD SNL+AECLTD WIG  RWAF
Sbjct:   335 QLSLGKDAAELIQSKVLQLLRGKNEDMKVFLEKDLRAGDFSNLNAECLTDIWIGKGRWAF 394

Query:   300 IDLTAGPFSWGPAVGGEGVRTELSLPNVGKTIGAVEEISEDEAEDRLQDAIQEKFAVFGD 359
             IDLTAGPFSWGP+VGGEGVRTELSLPNVG TIGAV EISEDEAED+LQ AIQ+KF+VFG+
Sbjct:   395 IDLTAGPFSWGPSVGGEGVRTELSLPNVGTTIGAVAEISEDEAEDKLQTAIQDKFSVFGE 454

Query:   360 KDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMQDLKNELQSFEGEEYDENH 419
              DHQA+DILLAEID+YELFAFKHCKGRKVKLALCEELDERM+DLK ELQSF+GEEYDE H
Sbjct:   455 NDHQAVDILLAEIDVYELFAFKHCKGRKVKLALCEELDERMRDLKTELQSFDGEEYDETH 514

Query:   420 KRKAIEALRRMENWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFH 479
             KRKA++ALRRME+WNLFSD  EEFQNYTVARDTFLAHLGATLWGSMRH+ISPS+ADGAFH
Sbjct:   515 KRKAMDALRRMESWNLFSDEREEFQNYTVARDTFLAHLGATLWGSMRHIISPSVADGAFH 574

Query:   480 YYETISFQLFFITQEKVRQVKQLPVNLKSLMDGLSSLLLPSQKPVFSQRMLTLSEDPXXX 539
             +YE ISFQL FITQEKVRQ+KQLPV+LK+LMDGLSSLLLPSQKP+FSQ MLTLSEDP   
Sbjct:   575 HYEKISFQLVFITQEKVRQIKQLPVDLKALMDGLSSLLLPSQKPLFSQHMLTLSEDPALA 634

Query:   540 XXXXXXXXXXXXPMLLVNGTYRKTVRSYVDSAILQYQLQRMNDRDSLKGAHAHSRSTLEV 599
                         P+LLVNGTYRKTVRSY+DS+ILQYQLQR+ND  SLKG HAHSRSTLE+
Sbjct:   635 MAFSVARRAAAVPLLLVNGTYRKTVRSYLDSSILQYQLQRVNDHTSLKGGHAHSRSTLEI 694

Query:   600 PIFWFIHGDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGQSLLWDLRSPIKAALA 659
             PIFW I GDPLL+DKHYQAKALS+MV+VVQSE  SWESHLQCNG+SLLWDLRSP+KAA+A
Sbjct:   695 PIFWLISGDPLLIDKHYQAKALSNMVVVVQSEASSWESHLQCNGRSLLWDLRSPVKAAMA 754

Query:   660 SVSEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPFSITSQGWHISQFQSDTIARSYIIS 719
             SV+EHLAGLLPLHLVYS AHE+AIEDW WSVGCNPFS+TSQGW +SQFQSDTIARSY+I+
Sbjct:   755 SVAEHLAGLLPLHLVYSVAHESAIEDWTWSVGCNPFSVTSQGWLLSQFQSDTIARSYMIT 814

Query:   720 TLEESIQTVNSAIHLLLMERTTEKTFKLFQSQERELVNKYNYVVSLWRRISTVTGDLRYA 779
              LEESIQ VNS IHLL +ERT +KTFKLFQS+EREL+NKY YVVSLWRR+S V G+ RY 
Sbjct:   815 ALEESIQAVNSGIHLLRLERTNKKTFKLFQSRERELMNKYKYVVSLWRRLSNVAGETRYG 874

Query:   780 DAMRQLYTLEDASKGFVDQVNATIALLHPIHCTRDRKVDVEFDLTTIPAFLIVLGILYVL 839
             DAMR L+TLE+A+  FV +VNAT+ +LHPIHCT++RKV VE D+TTIPAF+IVL +LY +
Sbjct:   875 DAMRFLHTLEEATSSFVREVNATVGVLHPIHCTKERKVKVEVDMTTIPAFIIVLILLYAV 934

Query:   840 LKPRRPKPKIN 850
             L+PR PKPKIN
Sbjct:   935 LRPRAPKPKIN 945




GO:0005739 "mitochondrion" evidence=ISM
GO:0010584 "pollen exine formation" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
DICTYBASE|DDB_G0285083 DDB_G0285083 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2098423 AT3G28720 "AT3G28720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273745 DDB_G0273745 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273189 DDB_G0273189 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279945 DDB_G0279945 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00033781001
SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (963 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query850
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 7e-14
 Identities = 81/636 (12%), Positives = 184/636 (28%), Gaps = 154/636 (24%)

Query: 2   EVDSMY-LPVPVN---FIFIGFEGNGNQDFQLHPDELER----WFL-------------K 40
           E+D +      V+    +F        +  Q   +E+ R    + +              
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 41  IDHIFEHTRVPPIGEVLAPFYRTSVDKVQ--RHHLPTISHINYNFSVHAIQMGE--KVTS 96
             +I +  R+    +V A +  + +      R  L  +        +    +    K  +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDG--VLGSGK--T 164

Query: 97  VFEHAIKVLARKDDVSTNRDDVDALWQVDV----SMMDVLFTSLVDYLQLENAYNIFILN 152
               A+ V      V    D     W +++    S   VL         L+     + ++
Sbjct: 165 WV--ALDVC-LSYKVQCKMDF-KIFW-LNLKNCNSPETVL-------EMLQKLL--YQID 210

Query: 153 PKHEKRARYGYRRGLSDSEITFLKENKDLQTKILQSGNIPESILALDKIRRPLYEKHPMM 212
           P    R+ +      S +    +   +    ++L+S      +L L  ++          
Sbjct: 211 PNWTSRSDH------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F 262

Query: 213 KFSWTI------AEDTDTAEWYNICLDPLNNVEKFYRGKETADIIQSKVLQLLKGKNEDL 266
             S  I       + TD           L++        E   ++  K L     + +DL
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDC---RPQDL 318

Query: 267 KFLLEKELKSGD--LSNLHAECLTDSWIGNNRWAFIDLTAGPFSWGPAVGGEGVRTELSL 324
                +E+ + +    ++ AE + D   G   W           W            ++ 
Sbjct: 319 P----REVLTTNPRRLSIIAESIRD---GLATWDN---------W----------KHVNC 352

Query: 325 PNVGKTIGA-VEEISEDEAEDRLQDAIQEKFAVFGDKD----HQAIDILLAEIDIYELFA 379
             +   I + +  +   E             +VF           + ++  ++   ++  
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDR-----LSVF-PPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 380 F-KHCKGRKVKLALCEELDERMQ----DLKNELQSFEGEEYDENHKRKAIEALRRMENWN 434
                     K +L E+  +        +  EL+  + E     H R  ++     + ++
Sbjct: 407 VVNKL----HKYSLVEKQPKESTISIPSIYLELKV-KLENEYALH-RSIVDHYNIPKTFD 460

Query: 435 LFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHVISPSIADGAFHYYETISFQLFFITQE 494
                      Y      F +H+G        H+ +    +     +  +     F+ ++
Sbjct: 461 SDDLIPPYLDQY------FYSHIG-------HHLKNIEHPE-RMTLFRMVFLDFRFL-EQ 505

Query: 495 KVRQVKQLPVNLKSLMDGLSSL-----LLPSQKPVFSQRMLTLSEDPALAMAFSVARRAA 549
           K+R          S+++ L  L      +    P + + +  +       + F    +  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-------LDFL--PKIE 556

Query: 550 AVPMLLVNGTYRKTVR---SYVDSAILQ---YQLQR 579
                L+   Y   +R      D AI +    Q+QR
Sbjct: 557 EN---LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00