Citrus Sinensis ID: 003106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 847 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.687 | 0.625 | 0.737 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.158 | 0.087 | 0.364 | 2e-14 | |
| Q59QW5 | 817 | Transcriptional regulator | N/A | no | 0.067 | 0.069 | 0.413 | 2e-06 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/603 (73%), Positives = 510/603 (84%), Gaps = 21/603 (3%)
Query: 171 RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 228
RRDG+HL NG+ NGL+GN+S +MRQNPG+ +++A++ YEE++K+P R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243
Query: 229 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEI 288
FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS DIKSEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303
Query: 289 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 348
NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362
Query: 349 QIQMLTPQH-QQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 407
Q+ MLTPQH QQL+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422
Query: 408 SPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQS 460
S L GG LLPRGDTDML+KLKMA + QQQQ QQQ PQ L+N Q
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482
Query: 461 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTA 520
QSSNH++HQQ+K+G GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542
Query: 521 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 580
NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598
Query: 581 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 640
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760
DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Query: 761 VFK 763
V+K
Sbjct: 774 VYK 776
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 628 FKEANSVRASTSK----VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683
F EAN + +K V+ FS DGKL ATG W T K + H+S +
Sbjct: 850 FTEANLAYSVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWV 909
Query: 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743
V FS LA+ S D+TVR+WD + G L+TF GH++ V S+ F PN ++ S
Sbjct: 910 NSVGFSQDGKMLASGSDDQTVRLWDI-SSGQCLKTFKGHTSRVRSVVFSPNS-LMLASGS 967
Query: 744 GDGEIRYWSINNGSCTRVFK 763
D +R W I++G C +F+
Sbjct: 968 SDQTVRLWDISSGECLYIFQ 987
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q59QW5|FLO8_CANAL Transcriptional regulator of filamentous growth FLO8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=FLO8 PE=1 SV=1 | Back alignment and function description |
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Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG-KVSSDPVAIDAPGGFLFEWWSVFWDIFIAR 66
++L+ I D+LVK + +A+AF E + S P +D GFL EWW VF+D+F R
Sbjct: 33 QVLNSLILDFLVKHQFQDTAKAFSKESPNLPSIPPLMDCSQGFLLEWWQVFFDLFQVR 90
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Transcription factor which mediates CO(2) sensing. Required for CO(2)-induced white-to-opaque switching, as well as for filamentous growth and virulence. Required for both normoxic and hypoxic biofilm formation. Hypoxic biofilm formation is a major cause of perseverance and antifungal resistance during infections. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 847 | ||||||
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.891 | 0.827 | 0.822 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.873 | 0.822 | 0.803 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.873 | 0.822 | 0.802 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.880 | 0.826 | 0.811 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.884 | 0.821 | 0.815 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.863 | 0.820 | 0.792 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.872 | 0.785 | 0.756 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.880 | 0.819 | 0.823 | 0.0 | |
| 356552535 | 902 | PREDICTED: transcriptional corepressor L | 0.878 | 0.824 | 0.787 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.873 | 0.819 | 0.805 | 0.0 |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/765 (82%), Positives = 667/765 (87%), Gaps = 10/765 (1%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 538
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 539 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 598
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLD 592
Query: 599 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 658
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 593 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 652
Query: 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 653 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 712
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV K
Sbjct: 713 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK 757
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/768 (80%), Positives = 668/768 (86%), Gaps = 28/768 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQH QQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMA--QMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMA Q QQQQQ QQQQ QQHTLSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFK
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/768 (80%), Positives = 667/768 (86%), Gaps = 28/768 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQH QQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMA--QMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMA Q QQQQQ QQQQ QQH LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFK
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/765 (81%), Positives = 658/765 (86%), Gaps = 19/765 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQH QQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKM-GPAGS 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+ G GS
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 538
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 539 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 598
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVDRFVEDGSLD 583
Query: 599 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 658
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 584 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 643
Query: 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 644 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 703
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV K
Sbjct: 704 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/771 (81%), Positives = 670/771 (86%), Gaps = 22/771 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 532
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 533 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 592
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFV 586
Query: 593 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 652
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 587 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 646
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 647 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 706
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV K
Sbjct: 707 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSK 757
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/768 (79%), Positives = 658/768 (85%), Gaps = 37/768 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQH QQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMA--QMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMA Q QQQQQ QQQQ QQH LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 536
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 537 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 595
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQL ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQL---------ADMDRYVEDG 568
Query: 596 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 655
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 569 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 628
Query: 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 629 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 688
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFK
Sbjct: 689 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFK 736
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/814 (75%), Positives = 659/814 (80%), Gaps = 75/814 (9%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQ QQ Q Q QQ QQQQ RD HLLNG
Sbjct: 121 LLMQ---------RHAQQQQQQQQHQQQPQSQPQQ--------PQPQQQQNRDRTHLLNG 163
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL GN P TANA+AT+MYEE+LK P RDSLDDAAMKQRFGENMGQLLDPN
Sbjct: 164 SANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPN 216
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST DIKSEINPVLNPRAAGPE
Sbjct: 217 HASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPE 276
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+QMLTPQH QQ
Sbjct: 277 GSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQ 336
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL GG PR
Sbjct: 337 LMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPR 396
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNP-----QQHTLSNQQSQSSNHNLHQQDKM- 473
GDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQH LSNQQSQ+SNH++HQQDK+
Sbjct: 397 GDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVG 456
Query: 474 GPAGSVTLDGSMSNSFRGNDQ--------------------------------------- 494
G GSVT+DGSMSNS+RGNDQ
Sbjct: 457 GGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSP 516
Query: 495 -----VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALP 549
VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGD +SMPALP
Sbjct: 517 IFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALP 576
Query: 550 HSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD 609
H+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDNVESFLS DD
Sbjct: 577 HNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDD 636
Query: 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669
TDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDKKAV+W+ D+
Sbjct: 637 TDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADS 696
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729
LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF GHS SVMSL
Sbjct: 697 LKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSL 756
Query: 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
DFHPNKDDLICSCDGDGEIRYWSINNGSC RV K
Sbjct: 757 DFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSK 790
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/772 (82%), Positives = 675/772 (87%), Gaps = 26/772 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ QQ Q Q QQ QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQQ QQQQQQQQQ QQQQ QQQQRRDGAHLLNG
Sbjct: 121 LLQ----------RHAQQQQQQQQQQQQQQQQQQQ-----QQQQQPQQQQRRDGAHLLNG 165
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF EN+GQLLDPN
Sbjct: 166 TTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTPDIKSE+NPVLNPRA GPE
Sbjct: 226 HATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQIQMLTPQHQQ 359
GSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ+QML QQ
Sbjct: 286 GSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQ 345
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
LLLAQQ+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPR
Sbjct: 346 LLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPR 403
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS--------NHNLHQQD 471
GDT+ML+KLKMAQMH QQQQQQQQQQ ++ PQQ Q + NHN+HQQD
Sbjct: 404 GDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQD 463
Query: 472 KMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 531
KMG AGS+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP
Sbjct: 464 KMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 523
Query: 532 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRL 591
STPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR
Sbjct: 524 STPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRF 583
Query: 592 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 651
VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGK
Sbjct: 584 VEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGK 643
Query: 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711
LLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+
Sbjct: 644 LLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADS 703
Query: 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFK
Sbjct: 704 TSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFK 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552535|ref|XP_003544622.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/766 (78%), Positives = 657/766 (85%), Gaps = 22/766 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKH S + I+ + + ++QQQQQQQ Q QQ Q QQQQQQQQ
Sbjct: 61 DIFIARTNEKH-----SEVAASYIETQLIKAREQQQQQQQPQPQQSQHQQQQQQQQQQQQ 115
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQ Q +L + QQQQQ QQQ QQ QQQQ Q PQ QQQP QQQQ RD AHLLNG
Sbjct: 116 QQHMQMQQILLQRAQQQQQQQQQQQQQQPQQQQLQQPQLQHQQQPPQQQQGRDRAHLLNG 175
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GN PGTANA+AT+MYEE+LKLP+ RDSL+DAAMKQR+G+ QLLDPN
Sbjct: 176 GTNGLVGN-------PGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGD---QLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KS+AATGQPSGQVLHG AG MS QVQARSQQLPGSTPDIKSEINPVLNPRAA PE
Sbjct: 226 HASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAAAPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTPQHQQ 359
GSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQPFHQ+ MLTPQHQQ
Sbjct: 286 GSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQ 345
Query: 360 -LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLP 418
L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSPL AGG P
Sbjct: 346 QLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFP 405
Query: 419 RGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG- 477
R DTDML+KLK+AQ+ QQQ QQQQ QQHTLSNQQSQ+SNH++HQQDKMG G
Sbjct: 406 RSDTDMLMKLKLAQLQHQQQNANPQQQQL---QQHTLSNQQSQTSNHSMHQQDKMGGGGG 462
Query: 478 SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH 537
SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPSTPSTH
Sbjct: 463 SVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTH 521
Query: 538 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSL 597
TPGDV+SMPALPHSG++SKPLMMF DG+GTLTSPSNQLWDDKDLEL+AD+DR VEDGSL
Sbjct: 522 TPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSL 581
Query: 598 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG 657
DDNVESFLSHDDTDPRD GR MDVS+GF+F E NSVRAST+KV+CCHFSSDGKLLA+GG
Sbjct: 582 DDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGG 641
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717
HDKKAVLW TD+LK K LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD +NPGYSLR
Sbjct: 642 HDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLR 701
Query: 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
TF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV K
Sbjct: 702 TFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSK 747
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/771 (80%), Positives = 661/771 (85%), Gaps = 31/771 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 532
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 533 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 592
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADVDRFV 577
Query: 593 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 652
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 578 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 637
Query: 653 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 638 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 697
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV K
Sbjct: 698 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSK 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 847 | ||||||
| TAIR|locus:2140215 | 333 | WDR5b "AT4G02730" [Arabidopsis | 0.162 | 0.414 | 0.330 | 2.5e-15 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.140 | 0.355 | 0.338 | 1.2e-13 | |
| UNIPROTKB|E1BR73 | 1251 | APAF1 "Uncharacterized protein | 0.220 | 0.149 | 0.288 | 1.7e-13 | |
| UNIPROTKB|F1P1P3 | 1252 | APAF1 "Uncharacterized protein | 0.220 | 0.149 | 0.288 | 1.7e-13 | |
| CGD|CAL0000165 | 798 | orf19.536 [Candida albicans (t | 0.153 | 0.162 | 0.350 | 5.3e-13 | |
| UNIPROTKB|H3BPK1 | 210 | KATNB1 "Katanin p80 WD40 repea | 0.145 | 0.585 | 0.328 | 8.1e-13 | |
| UNIPROTKB|H3BPD8 | 208 | KATNB1 "Katanin p80 WD40 repea | 0.145 | 0.591 | 0.328 | 8.1e-13 | |
| UNIPROTKB|E1BS49 | 1254 | APAF1 "Uncharacterized protein | 0.220 | 0.149 | 0.292 | 9.9e-13 | |
| RGD|620575 | 1249 | Apaf1 "apoptotic peptidase act | 0.211 | 0.143 | 0.288 | 1.3e-12 | |
| MGI|MGI:1306796 | 1249 | Apaf1 "apoptotic peptidase act | 0.211 | 0.143 | 0.288 | 3.4e-12 |
| TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 218 (81.8 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 46/139 (33%), Positives = 71/139 (51%)
Query: 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687
++ ++ T+ + C FS+DG LLA+ DK +LW E HSS I+D+
Sbjct: 33 YRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLA 92
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747
+S ++S D T+R+WDA +P L+ GH+ V ++F+P +LI S D
Sbjct: 93 WSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNP-PSNLIVSGSFDET 151
Query: 748 IRYWSINNGSCTRVFKVES 766
IR W + G C R+ K S
Sbjct: 152 IRIWEVKTGKCVRMIKAHS 170
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 41/121 (33%), Positives = 65/121 (53%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 766 S 766
S
Sbjct: 172 S 172
|
|
| UNIPROTKB|E1BR73 APAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 56/194 (28%), Positives = 94/194 (48%)
Query: 577 WDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVR 635
W +K L+ ++ RLV D + S D G + + V + S + +
Sbjct: 596 WINKK-SLK-NLSRLVVRPHRDAVYHACFSRDRQRIASCGADKTLQVFKAESGERLLEIS 653
Query: 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR- 694
A +++CC FS+D K +AT DKK +W++ T K EEH+ + +F+ +
Sbjct: 654 AHDDEILCCTFSADDKYVATCSADKKVKIWNSRTGKCLYVYEEHTEQVNCCQFNNRRGQY 713
Query: 695 -LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
LAT S D +++WD + Y T GH +V F PN DD I SC DG ++ W++
Sbjct: 714 LLATCSDDTYIKLWDLKDK-YCRNTMFGHVNAVSHCRFSPN-DDYIASCSTDGTVKLWNV 771
Query: 754 NNGSCTRVFKVESF 767
++ + R +++ F
Sbjct: 772 HSANELRTIEIKDF 785
|
|
| UNIPROTKB|F1P1P3 APAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 56/194 (28%), Positives = 94/194 (48%)
Query: 577 WDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVR 635
W +K L+ ++ RLV D + S D G + + V + S + +
Sbjct: 597 WINKK-SLK-NLSRLVVRPHRDAVYHACFSRDRQRIASCGADKTLQVFKAESGERLLEIS 654
Query: 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR- 694
A +++CC FS+D K +AT DKK +W++ T K EEH+ + +F+ +
Sbjct: 655 AHDDEILCCTFSADDKYVATCSADKKVKIWNSRTGKCLYVYEEHTEQVNCCQFNNRRGQY 714
Query: 695 -LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
LAT S D +++WD + Y T GH +V F PN DD I SC DG ++ W++
Sbjct: 715 LLATCSDDTYIKLWDLKDK-YCRNTMFGHVNAVSHCRFSPN-DDYIASCSTDGTVKLWNV 772
Query: 754 NNGSCTRVFKVESF 767
++ + R +++ F
Sbjct: 773 HSANELRTIEIKDF 786
|
|
| CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 47/134 (35%), Positives = 67/134 (50%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705
FS D K L + DK LW DT + + + H+ + DV+FSP T+S D+T R
Sbjct: 525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584
Query: 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K 763
+W D+ Y LR F GH V ++FHPN + + + D R W ++ G+C RVF
Sbjct: 585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSN-YVFTGSSDKTCRMWDVHTGNCVRVFLGH 642
Query: 764 VESFCCWCVNAMNR 777
S C V+ R
Sbjct: 643 TNSVNCLAVSPDGR 656
|
|
| UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++ S
Sbjct: 91 DLE-AAKILRTLMGHKANICSLDFHPY-GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 768 CCWCV 772
C+
Sbjct: 149 AVRCL 153
|
|
| UNIPROTKB|H3BPD8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 35 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 94
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++ S
Sbjct: 95 DLE-AAKILRTLMGHKANICSLDFHPY-GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 152
Query: 768 CCWCV 772
C+
Sbjct: 153 AVRCL 157
|
|
| UNIPROTKB|E1BS49 APAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 58/198 (29%), Positives = 95/198 (47%)
Query: 577 WDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVR 635
W +K L+ ++ RLV D + S D G + + V + S + +
Sbjct: 596 WINKK-SLK-NLSRLVVRPHRDAVYHACFSRDRQRIASCGADKTLQVFKAESGERLLEIS 653
Query: 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR- 694
A +++CC FS+D K +AT DKK +W++ T K EEH+ + +F+ +
Sbjct: 654 AHDDEILCCTFSADDKYVATCSADKKVKIWNSRTGKCLYVYEEHTEQVNCCQFNNRRGQY 713
Query: 695 -LATSSFD----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
LAT S D TV++WD + Y T GH +V F PN DD I SC DG ++
Sbjct: 714 LLATCSDDTYIKNTVQLWDLKDK-YCRNTMFGHVNAVSHCRFSPN-DDYIASCSTDGTVK 771
Query: 750 YWSINNGSCTRVFKVESF 767
W++++ + R +++ F
Sbjct: 772 LWNVHSANELRTIEIKDF 789
|
|
| RGD|620575 Apaf1 "apoptotic peptidase activating factor 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/184 (28%), Positives = 85/184 (46%)
Query: 587 DMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICCH 645
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 703
FSSD +AT DKK +W + T K EEHS + F+ L AT S D
Sbjct: 665 FSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSF 724
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
+++WD N T GH+ SV F P+ D+L+ SC DG ++ W + + + +
Sbjct: 725 LKLWDL-NQKECRNTMFGHTNSVTHCRFSPD-DELLASCSADGTLKLWDVRSANEKKSIN 782
Query: 764 VESF 767
V+ F
Sbjct: 783 VKRF 786
|
|
| MGI|MGI:1306796 Apaf1 "apoptotic peptidase activating factor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 53/184 (28%), Positives = 85/184 (46%)
Query: 587 DMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICCH 645
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 703
FSSD +AT DKK +W + T K +EHS + F+ L AT S D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
+++WD N T GH+ SV F P+ D+L+ SC DG +R W + + + +
Sbjct: 725 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSIN 782
Query: 764 VESF 767
V+ F
Sbjct: 783 VKRF 786
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.7379 | 0.6871 | 0.6251 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_VI1732 | hypothetical protein (894 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 847 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-16 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 8e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 3e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-12 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-12 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 5e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-11 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-11 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 1e-11 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 8e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-10 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-10 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 4e-10 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-10 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-09 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 9e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 1e-08 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 4e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 5e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 5e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 6e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 8e-08 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 8e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 9e-08 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 9e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-07 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 3e-07 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 3e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-07 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 3e-07 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 3e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 5e-07 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 5e-07 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 5e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 6e-07 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 6e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 7e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 8e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 8e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 1e-06 | |
| pfam03280 | 189 | pfam03280, Lipase_chap, Proteobacterial lipase cha | 1e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-06 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 2e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 3e-06 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-06 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 4e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 5e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 9e-06 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 9e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 1e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 1e-05 | |
| pfam12118 | 261 | pfam12118, SprA-related, SprA-related family | 1e-05 | |
| pfam14282 | 106 | pfam14282, FlxA, FlxA-like protein | 1e-05 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 1e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 1e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 1e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 1e-05 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-05 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 2e-05 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 2e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 2e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 2e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-05 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 3e-05 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 3e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 3e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 3e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 4e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-05 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 4e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 5e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 6e-05 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 6e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 6e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 6e-05 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 6e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 7e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 7e-05 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 7e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 7e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 9e-05 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 9e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 9e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 1e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-04 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 1e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 1e-04 | |
| pfam10595 | 349 | pfam10595, UPF0564, Uncharacterized protein family | 1e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 2e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 2e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 2e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 2e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 2e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 3e-04 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 3e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 3e-04 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 3e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 3e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 3e-04 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 3e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 4e-04 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 4e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 4e-04 | |
| pfam04684 | 508 | pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga | 4e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 4e-04 | |
| PRK10863 | 216 | PRK10863, PRK10863, anti-RNA polymerase sigma fact | 4e-04 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 4e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 5e-04 | |
| pfam09831 | 177 | pfam09831, DUF2058, Uncharacterized protein conser | 5e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 6e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 6e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 7e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 7e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 7e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 7e-04 | |
| PRK11637 | 428 | PRK11637, PRK11637, AmiB activator; Provisional | 7e-04 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 7e-04 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 7e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 8e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 8e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 8e-04 | |
| PRK05687 | 246 | PRK05687, fliH, flagellar assembly protein H; Vali | 8e-04 | |
| pfam11932 | 250 | pfam11932, DUF3450, Protein of unknown function (D | 8e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 9e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 9e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 0.001 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.001 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.001 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.001 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.001 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.001 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 0.001 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 0.001 | |
| pfam05044 | 908 | pfam05044, Prox1, Homeobox prospero-like protein ( | 0.001 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.001 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.002 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.002 | |
| pfam11180 | 192 | pfam11180, DUF2968, Protein of unknown function (D | 0.002 | |
| pfam11068 | 131 | pfam11068, DUF2869, Protein of unknown function (D | 0.002 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.002 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| pfam14362 | 297 | pfam14362, DUF4407, Domain of unknown function (DU | 0.002 | |
| cd10163 | 90 | cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.002 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.003 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 0.003 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.003 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 0.003 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 0.003 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.003 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 0.003 | |
| pfam06625 | 122 | pfam06625, DUF1151, Protein of unknown function (D | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.003 | |
| PRK01294 | 336 | PRK01294, PRK01294, lipase chaperone; Provisional | 0.003 | |
| TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system Om | 0.003 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.004 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.004 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.004 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 0.004 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.004 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.004 | |
| TIGR02473 | 141 | TIGR02473, flagell_FliJ, flagellar export protein | 0.004 | |
| pfam02948 | 174 | pfam02948, Amelogenin, Amelogenin | 0.004 | |
| pfam12795 | 239 | pfam12795, MscS_porin, Mechanosensitive ion channe | 0.004 | |
| COG3073 | 213 | COG3073, RseA, Negative regulator of sigma E activ | 0.004 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.004 | |
| pfam03249 | 502 | pfam03249, TSA, Type specific antigen | 0.004 | |
| COG3679 | 118 | COG3679, COG3679, Regulatory protein involved in c | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 747 EIRYWSINNGSCTRVFKV-ESFCCWCV 772
I+ W ++ G C + E+
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVA 226
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 754 NNGSCTRVFK 763
G C +
Sbjct: 123 ETGKCLTTLR 132
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V FS DG +A+ D LW T K L H+ + V FSP +L +SS
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760
D T+++WD G L T GH V S+ F P+ L+ S DG IR W + G C +
Sbjct: 198 DGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQ 255
Query: 761 VFKVESFCCWCV 772
+ +
Sbjct: 256 TLSGHTNSVTSL 267
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.3 bits (238), Expect = 8e-21
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 685
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 745 DGEIRYWSINNGSCTRVFKVES 766
DG IR W + G + + S
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHS 371
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.2 bits (230), Expect = 7e-20
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 690
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 691 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 749 RYWSINNGSCTRVFKVESFCCWCVN 773
+ W + G + +
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLA 205
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 43/116 (37%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T +V FS DG+ L + D LW T K L H + + V FSP L
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLA 235
Query: 698 S-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
S S D T+RVWD G ++T GH+ SV SL + P+ L S DG IR W
Sbjct: 236 SGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 1e-18
Identities = 46/124 (37%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLAT 697
SK+ + LLA+ D LW T K LE HS +T + FSP LA+
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 698 -SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
SS D T+++WD G L T GH+ V SL F P+ LI S DG IR W ++ G
Sbjct: 173 GSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 757 SCTR 760
R
Sbjct: 232 KLLR 235
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 4e-18
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 637 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 694
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 755 NGSCTRVFKVESFCCW 770
G ++
Sbjct: 315 TGKLLSSLTLKGHEGP 330
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.2 bits (204), Expect = 1e-16
Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITD 685
K ++ + V FS DGKLLA+G D LW T K + L H+ ++
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203
Query: 686 VRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
+ FSP +A+ S D T+R+WD T GHS SV+S F P+ L
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSS- 261
Query: 745 DGEIRYWSINNG-SCTRVFKVESFCCWCV 772
DG IR W + + S R S V
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
|
Length = 466 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 89 QQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
Q Q Q + QQ ++QQ S + Q+Q Q+ + Q QQ + Q
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQP 636
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 180
Q QQ Q QQQ QQ Q Q +QQ R + G
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 687 RFSPSMPRLATSSFDKTVRVWD 708
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-15
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ Q+Q Q+ +QQ QQ Q Q Q QQ QQ Q Q QQ QQ Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ------------QQGQQGQGGQ 656
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQR 171
Q ++ QQ + + +Q+
Sbjct: 657 GGQGSLAER--QQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQQQQQHQQ 144
+EQ Q+ +QQ QQ Q Q Q P QQ QQ Q QQ QQ Q Q A++QQ +
Sbjct: 612 QEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Query: 145 QHQQQQQQQQQPPQQPQQQQPQ 166
+ +Q+ + +
Sbjct: 672 ELGRQRGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 86 AREQQQQQQQQ----QQQQQQQQQQSQQPPHQQQQQQ-----QQQQQ-------QLQMQQ 129
A++ +Q QQ Q Q Q QS+ QQ + ++QQ LQ Q
Sbjct: 559 AQQLLEQLQQMMENLQVTQGGQGGQSEM---QQAMEGLGETLREQQGLSDETFRDLQEQF 615
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+QQ Q Q Q Q Q Q QQ Q QQ QQ Q G
Sbjct: 616 ---NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
|
Length = 820 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (182), Expect = 6e-14
Identities = 59/198 (29%), Positives = 81/198 (40%), Gaps = 15/198 (7%)
Query: 576 LWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-----RGMDVSQGFSFKE 630
LWD LR+ L +V S D +G R D+ G
Sbjct: 267 LWD-----LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 631 ANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
+++ V FS DG LL +GG D LW T K LE HS+ + V FS
Sbjct: 322 -LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS 379
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749
P +++ S D TVR+WD + G LR GH++ V SLDF P+ + S D IR
Sbjct: 380 PDGRVVSSGSTDGTVRLWD-LSTGSLLRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIR 437
Query: 750 YWSINNGSCTRVFKVESF 767
W + + F +
Sbjct: 438 LWDLKTSLKSVSFSPDGK 455
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 9e-14
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 79 IETQLIKAREQQQQQ---QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
Q + A Q Q Q QQ QQ Q P QQ Q Q QQ +
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 136 A---QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q Q Q PPQQPQ QQ Q +
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 46/137 (33%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ----------------------------- 114
++ +Q Q+ QQ Q Q S + Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQ 568
Query: 115 -----QQQQQQQQQQLQMQQIL--LQRHAQQQQ----------QHQQQHQQQQQQQQQPP 157
Q Q Q Q +MQQ + L ++QQ Q Q Q+ +QQ QQ
Sbjct: 569 MMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQ 628
Query: 158 QQPQQQQPQQQQQRRDG 174
Q QP QQ Q+ G
Sbjct: 629 GGQGQGQPGQQGQQGQG 645
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-13
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQI 130
S+ A + + QQ Q QQ QPP QQQQ Q Q Q Q Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q QQ Q Q QQ+ PQ ++Q
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-13
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
EQQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q L +R + + +Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQG--QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Query: 146 HQQQQQQQQQPPQQPQQ 162
+ + +
Sbjct: 677 RGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ-- 147
Q Q Q QQPP QQ Q QQ+ QQQQ Q Q Q
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQPPQPQAQPP 277
Query: 148 --------QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
Q Q P P QQ ++
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 28/83 (33%), Positives = 30/83 (36%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ QQ +Q Q Q P Q Q QQ Q L QQ QQ
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQ 169
Q QQ PP PQ Q QQQ
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQP 269
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q +Q Q QQ Q QQ LQ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 146 HQQQQ---QQQQQPPQQPQQQQPQQQQQ 170
QQQQ Q Q PPQ P Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQG 291
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 7e-13
Identities = 25/103 (24%), Positives = 32/103 (31%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
++ +E QL + ++ Q Q QQ Q Q QQ +Q Q
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q QQ Q Q Q PQQP Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-12
Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 49/155 (31%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ-------------- 133
QQ QQ Q QQQ QQ Q Q ++QQ + +L Q+ L
Sbjct: 636 PGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDAL 695
Query: 134 -------RHAQQ---------------------QQQHQQQHQQQQQQQQQPPQQPQQQQP 165
A++ ++ + + QQQ Q QQQ
Sbjct: 696 GRAGRAMGGAEEALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Query: 166 QQQQQRRD-------GAHLLNGNTNGLLGNDSLMR 193
+Q RD G G+ + G R
Sbjct: 756 RQGGNGRDPLGRPRGGQGPDGGDRVKVPGEIDYQR 790
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q QQ +Q Q Q +Q Q QQ Q Q Q Q
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPL 243
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q Q P QQQ++
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ 268
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 4e-12
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ QQQ QQ QQ P Q QQ QQ Q Q QQ Q Q Q QQ
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 148 QQQQQQQQPPQ----QPQQQQPQQQ 168
Q Q QQP Q QPQ QQPQQ
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQPQQP 836
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQQQ+ ++ ++Q+++++ QQ QQ+Q +Q++ Q+++ L Q++Q +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 QQQQQQQQQPPQQPQQ 162
Q +Q+Q +
Sbjct: 126 QAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 5e-12
Identities = 38/82 (46%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q QQQ Q QQ + Q QQQ Q QQQ QM Q AQ Q QQQ Q Q
Sbjct: 203 GGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQ 262
Query: 152 QQQQ---PPQQPQQQQPQQQQQ 170
QQ Q P QQQP QQQ
Sbjct: 263 PQQMQGGQMQVPMQQQPPQQQP 284
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 22/82 (26%), Positives = 24/82 (29%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q QQ Q QQ Q Q Q Q Q L Q QQ
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q+ Q + Q Q
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP--HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+++ Q QQQQQ Q QPP +Q Q Q Q Q
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q+ Q ++Q Q QQQ+ Q+
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 24/118 (20%), Positives = 61/118 (51%)
Query: 55 WWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ 114
W S+ I + S + A ++ + + + Q QQ ++ +QQ++ ++ +
Sbjct: 31 WGSLDETIEASGGGGGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAE 90
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + +Q +Q +++Q+ +R Q+QQ Q + ++Q Q +Q Q+ Q ++ +Q+++
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-11
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A +QQ QQ QQ Q Q QQ QQP Q Q QQ QQ Q + QQ
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ---YQQPQQP 810
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL---NGNTNGL 185
Q Q+QQ QQ PQ Q QQP Q + H L NG++ L
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +QQQQQ+ ++ + Q+ +QQQ ++ QQ+Q Q+ L Q ++ +Q+ Q +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 150 QQQQQQPPQQPQQQQPQQQQ 169
+ +Q +Q Q ++ +
Sbjct: 122 EAAKQAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
+Q +QQQQQ+ +++++ Q+++++QQQ ++LQ +Q Q +Q ++ + Q+Q++
Sbjct: 62 EQYNRQQQQQKSAKRAEE---QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 152 QQQQPPQQPQQQQPQQQQQRRDGA 175
Q ++ +Q +Q Q ++ A
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAA 142
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+Q +QQQQQ+ ++ ++ ++ QQQ ++ QQ+Q + ++ L++ +++ Q+Q +Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER--LKQLEKERLAAQEQKKQ 119
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +Q + +Q + +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAA 144
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 65.0 bits (157), Expect = 8e-11
Identities = 46/103 (44%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ--QSQQPPHQQQQQQQQQQQQLQMQ---QILLQR 134
+ ++ EQQ+QQQ Q QQQQQQ Q QQ QQQQQ Q QQ QM Q Q
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQA 397
Query: 135 HAQQQQQHQQQH---QQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
H Q QH Q+Q Q QQQ Q QQ Q Q QQ + G
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHG 440
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 55/219 (25%), Positives = 72/219 (32%), Gaps = 6/219 (2%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
++ + Q QQQQ Q QQQ Q Q QQ QQQ Q Q Q QQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQ-QQQPQQQQQRRDGAHLLNGNTNGLLGND-SLMRQ 194
QQ Q Q Q QQQ QQ PQQ Q P Q QQ G G G + Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 195 NPGTANAMATRMYEEKLKL---PVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAAT 251
+++LK +R +Q+ G N +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 252 GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 290
+ G GG+ + Q S+P ++
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 45/133 (33%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ--MQQI-------------- 130
RE +Q +Q Q+ Q P Q + QQ LQ M +I
Sbjct: 502 REALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQ 561
Query: 131 LLQ---------RHAQQQQQHQQQHQQQ----------QQ----------QQQQPPQQPQ 161
LL+ + Q Q Q + QQ QQ Q+Q Q+ +
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGE 621
Query: 162 QQQPQQQQQRRDG 174
QQ Q Q + G
Sbjct: 622 QQGQQGQGGQGQG 634
|
Length = 820 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ+Q +Q Q +QQ Q + P+ +Q Q + QQ + Q Q
Sbjct: 83 EQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ---AQQQQPPATTAQPQP 139
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQ 170
+Q P QPQ P + Q
Sbjct: 140 VTPPRQTTAPVQPQTPAPVRTQP 162
|
Length = 256 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 6e-10
Identities = 30/81 (37%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQ Q Q QQ Q Q Q Q QQ QQ Q Q Q
Sbjct: 152 QQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQ---QPPQMGQPGMPGGGGQG 208
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
Q QQQ P QQQ PQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQ 229
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 2e-09
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y + Q A + Q QQ QQ Q Q QQ QQP Q Q QQ QQ A
Sbjct: 765 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-----------AP 813
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q Q Q Q Q Q PQQP QPQ
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
Length = 1355 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQP------------PHQQQQQQQQQQQQLQ----MQQ 129
A + + Q Q + Q Q Q +Q+ Q Q Q QQ L +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ +Q Q +Q PQQ Q Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+ + Q Q + Q Q P Q+ ++ + QLQ +Q Q QQ Q +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 151 Q--QQQQPPQQPQQQQPQQQQQRRDGAH 176
QQ PP+QP Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A Q +Q QQ + Q Q + +P Q QQ Q Q +Q L Q Q Q
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQ-PVSPQVAPAPQ 155
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q QP + Q +
Sbjct: 156 PVHSAPQPAQQAFQPAEPVAAPQPE 180
|
Length = 333 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ- 147
Q + Q Q Q Q+ S + Q QQ+QQ Q Q Q +L + +Q Q
Sbjct: 137 PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196
Query: 148 -QQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q QPPQ +Q QQ
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 57.7 bits (138), Expect = 1e-08
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ-M 127
++ ++ + + Q + ++QQ QQQQQ Q QQ Q Q Q LQ M
Sbjct: 348 QRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQM 407
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q + LQ Q QQQ Q HQQ QQQ QQP Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A+ ++Q+++++QQQ ++ QQ Q +Q++ +Q ++++L Q+ ++ A++ +
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAA--EQERLKQLEKERLAAQEQ--KKQAEEAAKQAAL 129
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q+Q ++ + + + + +R A
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
Length = 387 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-08
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ QQ Q QQ + Q P QQ QQQ QQQ QQ Q AQQ Q +Q H
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Query: 147 QQQQQQQQQ 155
++ ++Q Q
Sbjct: 257 KRSREQGNQ 265
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 56.1 bits (134), Expect = 4e-08
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q QQ + + QQQ+++MQ+I QR Q QHQQQ QQ+ QQQQ
Sbjct: 310 QSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQ 369
Query: 155 QPPQQPQQQQPQQQQQRRDG 174
QQ QQ QQ + +G
Sbjct: 370 MLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
AR Q Q Q Q +Q QQPP Q Q + Q Q + + Q +Q Q
Sbjct: 84 ARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQ 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q QQ Q
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQ 169
|
Length = 333 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 50 GFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLI--KAREQQQQQQQQQQQQQQQQQQS 107
G L + + + I+ L+ A QQ + QQQ++ +++Q
Sbjct: 16 GLLI--LGSLY-----HSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQE 68
Query: 108 QQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+Q +QQ ++ ++Q+ + + Q+ +Q+ ++ +Q +Q +Q ++ +Q + +
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQAR---QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Query: 168 QQQR 171
+Q
Sbjct: 126 AKQA 129
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ QQ Q QQ +Q AQQ QQ QQ Q QQ P QQ +Q +R
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ Q +QQ Q + ++Q P Q+QQ Q+Q+Q Q+ + QR AQQ + +Q Q
Sbjct: 123 EQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQ--QRLAQQSRTTEQSWQ 180
Query: 148 QQQQ--QQQQPPQQPQQQQPQQQQQ 170
QQ + Q QP+Q +P QQ
Sbjct: 181 QQTRTSQAAPVQAQPRQSKPASTQQ 205
|
Length = 319 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 94 QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+ + + QQ + Q P QQ Q QQ QQQ Q Q QQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------------QQQPQQQPVQPAQQPTP 242
Query: 154 QQPPQQPQQQQPQQQQQRRDG 174
Q P QQP Q + ++ R G
Sbjct: 243 QNPAQQPPQTEQGHKRSREQG 263
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
R QQQ++ +++Q++Q++ QQ ++Q+ +Q +Q +++Q + +Q +Q
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA--EKAAKQAEQA 110
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q +++Q+Q + +Q + + +
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAK 135
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + QQ Q +QQP Q QQ QQQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP-------------QQQPVQPAQQPT 241
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
Q QQPPQ Q + ++Q
Sbjct: 242 PQNPAQQPPQTEQGHKRSREQ 262
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ QQ Q+Q+Q QQ +QQ+ Q +Q QQQ + Q + Q + QQ
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
Query: 146 HQQQQQQQQQPPQQPQQQQ 164
+Q Q Q + QQ
Sbjct: 207 YQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 8e-08
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQHQ 143
+ R + +++ +Q++Q+ Q +++ Q ++ QQQQ+L Q LQR A +++
Sbjct: 273 QQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQR-ALERRLRL 331
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGN-----DSLMRQ 194
+ + ++ Q+ Q PQ++ + QQ+ L L ++L +Q
Sbjct: 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 88 EQQQQQQQQQQQQ-------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
EQ Q +QQ Q +Q Q + QQQ QQQQ Q Q
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQ--------PQPV 140
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q P + Q P Q
Sbjct: 141 TPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
|
Length = 256 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 10/94 (10%), Positives = 59/94 (62%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E A E+++++++++++++ + +Q +++++Q++ +++LQ ++ + + +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q++ + + Q+++++Q++ ++ + ++ +++
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 678
S + + K + LL+ G + +L + S L
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 736
H IT + FSP L + S D T+++WD DN +++ G H +SV L P+ +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 737 DLICSC-DGDGEIRYWSINN-GSCTRVFKVESFCCWCV 772
++ + DG ++ W ++ G R + S +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL 161
|
Length = 466 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL + +Q Q + Q QQQ QQQQ Q + Q Q
Sbjct: 100 TQLSEVPYNEQTPQVPRSTVQIQQQA------QQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q + P+ + ++++QR
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
|
Length = 256 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 23/98 (23%), Positives = 32/98 (32%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
EV + A+E + + Q Q Q +Q QQ + Q Q +
Sbjct: 65 EVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP 124
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ +Q Q +Q QQ P P Q Q
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 13/102 (12%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ---------QSQQPPHQQQQQQQQQQQQLQMQQI 130
E + K RE + + QQ++ + ++++ Q + ++Q+++++ +++ + +Q
Sbjct: 175 ERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L + +Q ++ +++ Q+++ +++ ++ ++Q + ++ +
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ--HQQQH 146
Q Q QQQQ Q Q P QQ Q QQ QQ Q Q QQ
Sbjct: 78 APQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q PQQ Q Q P QQ Q
Sbjct: 138 AQQPQPPPQVPQQQQYQSPPQQPQ 161
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 99 QQQQQQQQSQQPPHQQQQQ----QQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ + Q Q + +QQ ++Q ++L+ +Q Q +Q ++ + + Q+QQ+Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 155 QPPQQPQQQQPQQQQQRRDGA 175
+ +Q Q +Q QQ++Q R A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAA 142
|
Length = 387 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A + QQ Q QQ Q Q P QQ QQQ Q Q Q Q+ Q +Q H++
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Query: 146 HQQQQQQ 152
+Q Q+
Sbjct: 260 REQGNQE 266
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ-QLQMQQILLQRHAQQQQ 140
+L +A ++ +Q++Q+ Q ++ + Q P QQQQ+ + Q ++Q+ L +R +Q
Sbjct: 275 RLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQ 334
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ ++ Q+ QQQ Q + QQ+ +Q +QR
Sbjct: 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQR 365
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 12/89 (13%), Positives = 60/89 (67%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ +E+++ +++++Q+Q+ Q+ + +Q ++++ Q+++ ++ ++ +L++ A+ ++ Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++++ ++ + ++ +QQ +++++R
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAA 306
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 86 AREQQQ--QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
RE+ + ++Q QQQ + ++ Q + + + Q +QQQ + +Q +Q QQ
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEA 694
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++Q Q+ Q+ + QQ Q ++++R
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQR 723
|
Length = 1068 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 14/107 (13%), Positives = 52/107 (48%)
Query: 67 TNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
++ + ++ +L + +E+ + Q+Q + QQ+ Q+ +Q + + ++ Q++L
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ L + +++++ ++ + +Q+ + + Q+ ++R
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 17/81 (20%), Positives = 25/81 (30%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + Q Q QQ Q P Q QQ Q Q + QQ +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 148 QQQQQQQQPPQQPQQQQPQQQ 168
Q + P +P+++
Sbjct: 175 AAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 5e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + Q + P H Q QQQ + +L QQ + + +QQ+Q Q HQ
Sbjct: 298 KSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQH 357
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQQQQQ+ QQ Q QQQ + H +NG
Sbjct: 358 QQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----------------QQ 123
E L +E ++Q++ + ++ + Q QQ+ Q
Sbjct: 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD 87
Query: 124 QLQMQQILLQ-----RHAQQQQQHQQ----QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ +LLQ R ++Q + + QQ P+ Q Q+ + Q RD
Sbjct: 88 DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERD 146
|
Length = 835 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQHQQQQ 150
QQ Q P Q QQ + Q H Q QQ Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQ 103
Query: 151 QQQQQPPQQPQQQQPQQQQQR 171
Q PQQP Q QP
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIP 124
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 6e-07
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 89 QQQQQQQQQQQQQQQQ-------QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QQQQQ Q QQ Q Q Q + QQ Q + Q+Q+Q QQ Q H Q QQQ
Sbjct: 373 QQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQ 432
Query: 142 HQQQHQQQQQQQQQPPQQPQQ 162
HQQ Q Q P P
Sbjct: 433 HQQPAQHGQMGYGIPNGYPAH 453
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
Q++K R+Q+ + Q +Q+QQ+ + ++Q+QQ +QQ+ M Q Q+Q
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH 90
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + + +Q ++++ +
Sbjct: 91 LLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 16/97 (16%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+ Q A +++Q++Q++ +QQ ++ ++ + +Q +Q++ +Q+ ++ Q
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRA---AEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q ++Q Q ++ + +Q + + + + +++ ++ A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.3 bits (124), Expect = 8e-07
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ---QQH 142
A Q Q QQQ + + Q Q+ Q+ +QQ+QQQ Q QQ Q H QQQ QQ
Sbjct: 316 AMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQ 375
Query: 143 QQQHQQQQQQQQ----QPPQQPQQQQPQQQQQRR 172
QQ HQ QQ Q Q Q Q QQ +
Sbjct: 376 QQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQH 409
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQ--QQQQHQQQ 145
Q+ + + Q QPP+ Q +Q QQ + Q+ R AQ Q Q
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQR 171
+Q Q +Q Q P PQ Q
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQPVHS 159
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 11/93 (11%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 82 QLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +ARE+Q + +++ Q+++ +++ + ++ +Q + ++ +Q+ + +++ H ++
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q ++ ++++ +++ + ++ +++ +R+
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQ 326
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ---------QQQLQMQQILLQRHAQQQQQ 141
Q QQQQ Q Q Q P QQ Q QQ Q Q Q+ QQ Q
Sbjct: 83 QPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQQQ Q P Q QQ P Q Q
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSA 173
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL----------------- 131
Q +Q+ ++ +Q P ++ ++ QQ Q
Sbjct: 72 QDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGASPQDLRAARA 131
Query: 132 ----------LQRHAQQQQQHQQQHQQQQQQQQQ---PPQQPQQQQPQQQQQRR 172
L + Q++ QQ++ ++ Q +Q Q Q R+
Sbjct: 132 ALVGPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQAQIAQLRQ 185
|
Length = 189 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 1e-06
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
++Q +++QQQQ+Q+++ Q + QQ+ QQ + + + QQ +R+ ++QQQ Q+Q+Q
Sbjct: 38 KEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQ 97
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ+ QQ Q+P++QQ Q++ R
Sbjct: 98 ECQQRCQQQEQRPRRQQQCQRECR 121
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + Q +K + + + QQQ QQQQQQQ P QQQ QQ Q QM
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 128 Q--QILLQRHAQQQQQHQQQHQ------------QQQQQQQQPPQQPQQQQPQQQQ 169
L + Q Q Q Q Q PQ PQ P
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGG 439
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL++ +Q +Q+QQ Q+Q+Q Q Q+ QQ + +Q QQ R +Q
Sbjct: 134 TQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ---TRTSQAAP 190
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQ------QPQQQQ 169
Q Q + QQP Q Q Q + QQ
Sbjct: 191 VQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ-QILLQRHAQQQ 139
+ ++ Q++Q+ + ++ Q + ++ +QQQ+ + +L+ + L Q+
Sbjct: 278 HRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRL 337
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ Q+ Q Q+QQQ QQ +++ + +++
Sbjct: 338 ERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRKR 374
|
Length = 440 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774
RT GH+ V + F P+ L+ + GDG I+ W + G R K + V A
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
|
Length = 289 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ---QQLQMQQILLQRHAQQQQQHQQ 144
E Q Q + Q Q QQP +Q Q +Q QQ Q+ + Q QQ Q
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q +P +P + +++
Sbjct: 170 PAEPVAAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 11/94 (11%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E + + R++++++ + Q+Q ++++ + +Q++ +++ Q++ QM +I+ + +
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKR----RQEEYEERLQEREQMDEIIERIQEED 112
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + Q++ ++Q++ +++ + +++ ++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 3e-06
Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ--QQQHQQ 144
REQQQ +++ ++Q +++QQQ +Q Q++ +Q QQ+ Q + + QQ ++++++
Sbjct: 28 REQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEK 87
Query: 145 QHQQQQQQQQQPPQ--QPQQQQPQQQQQ 170
+ QQQQ+Q Q+ Q Q Q+Q+P++QQQ
Sbjct: 88 EQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 19/96 (19%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----QQQLQMQQILLQRHAQ 137
+L K +E+ +Q + + + ++ + QQ+Q + + + +++ Q+Q Q +Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Query: 138 -QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++++Q++ +QQ++Q ++ + ++ +Q+ RR
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRR 150
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ R++++QQQ ++ QQ+Q +Q + ++++ Q+Q++ + A+Q Q+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA------AKQAALKQK 132
Query: 145 QHQQQQQQQ 153
Q ++ +
Sbjct: 133 QAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 14/103 (13%), Positives = 61/103 (59%)
Query: 71 HSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
+ E A E + IKA E++++++ + ++++ + + +++++++++++ + Q
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +++Q+ ++ Q+++Q + ++ Q++ + Q++R+
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 8/96 (8%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 84 IKARE--QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ ++ Q+ +++Q ++++++ Q++ + ++++ ++Q + +++Q ++ ++ +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 142 H----QQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
H +QQ +++++++ ++ ++ + +++ +
Sbjct: 289 HRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ-----QQQQQLQMQ-QILLQRH 135
+L++ +Q+ +Q QQ + + + +Q QQQ+ ++ ++ + + L++
Sbjct: 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + + + ++ +QQ Q Q + +
Sbjct: 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
Length = 1486 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 85 KAREQQQQQQQQQ-----------QQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILL 132
A QQ Q Q+ Q++Q+ + +++ + ++ +QQQ+L I L
Sbjct: 263 SAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRL 322
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+R + Q ++Q ++ Q+ P Q QQQ+ QQ ++R D A
Sbjct: 323 RRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKA 365
|
Length = 440 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 15/79 (18%), Positives = 42/79 (53%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K +E+Q ++ + +Q +Q++ Q + + Q+QQ+Q + +Q L++ Q++Q +
Sbjct: 82 KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141
Query: 145 QHQQQQQQQQQPPQQPQQQ 163
+Q+++ + + +
Sbjct: 142 AAEQKKKAEAAKAKAAAEA 160
|
Length = 387 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 27/82 (32%), Positives = 30/82 (36%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ QQ+ Q Q PP QQ Q QQ Q QQ Q QQ Q Q Q
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P++ Q Q
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSY 191
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQQSQ PP HQ Q QQ Q QQ Q+ Q Q
Sbjct: 73 LPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP 132
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
QQ Q Q P QP Q PQQQQ
Sbjct: 133 AQQPQAQQP-QPPPQVPQQQQ 152
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQ-------------------------PPHQ 113
+ Q + Q Q QQQ + Q+ Q++Q Q
Sbjct: 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQ 781
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+Q +Q + Q Q Q L+ + AQ QHQQ + +Q QQ+ Q QQ R+
Sbjct: 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQH-RPDGLDLTVTVEQIQQELAQLAQQLRE 840
Query: 174 GA 175
Sbjct: 841 NT 842
|
Length = 1047 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 13/94 (13%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q +A EQ++ +Q ++++ Q+Q+ Q + +Q +Q+Q + A+ +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ + + ++ + + + ++ +
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 17/96 (17%), Positives = 44/96 (45%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q K +QQ ++ QQ+Q +Q++ + + Q+Q++Q ++ Q L Q+ A++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ + + + ++ + +++ A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + Q ++ QQQQ+ + Q+ +++ + +Q+L+ LQ+ Q++
Sbjct: 293 QLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRI 352
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q Q+ +Q +Q+ + ++Q +++Q+
Sbjct: 353 ERAQ-QRLEQLEQRLRRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 29 AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKARE 88
QA+Q K++ + +A W V ++ ++H + +L + +
Sbjct: 476 EQAYQLVRKIAGEVSRSEA--------WDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ +QQQ+ ++ + ++ + + + +Q Q++ + L + ++ +++ QQ
Sbjct: 528 RLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
+Q Q + Q+ + P
Sbjct: 588 LEQLQAR-IQRLAARAPAWLA 607
|
Length = 1486 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36
+ L+ I+DYLVK K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|221429 pfam12118, SprA-related, SprA-related family | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+ + AA +L K + ++ +++ ++ Q Q+QQ+QQQQ++ Q++
Sbjct: 55 KGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
Query: 129 QILLQRHAQQQQQHQQQHQ 147
+ L+ ++ + H+Q H
Sbjct: 115 E--LKARDREVRAHEQAHA 131
|
This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261 |
| >gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q+Q Q +Q ++ ++Q+QQQ QQQ+QM Q + + QQQQ ++ QQQ
Sbjct: 25 QKQIQSLTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQL--QQQQSEEAQQQQ 82
Query: 150 QQQQQQPPQQP 160
Q + P Q
Sbjct: 83 QSSIEDSPSQT 93
|
This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation. Length = 106 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 18/128 (14%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQ------------QQQQQQQQLQMQQILL 132
K ++Q++ Q+ +++Q+Q+++ ++ + +Q Q+ QQ + + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 133 -------------------------QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
++ Q+ + + + QQQ++++++ Q+ +QQ+ ++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 168 QQQRRDGA 175
++Q+ + A
Sbjct: 216 RKQKAEEA 223
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ Q Q QQ P+QQQ QQ Q QQ H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPP-----------PYSPPQQQQGHFMPPQPQP 51
Query: 155 QPPQQPQQQQPQQQQQ 170
P Q PQQQQP Q
Sbjct: 52 YPKQSPQQQQPPQFSS 67
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
AR+ Q Q Q + Q + QPP Q Q + Q A+Q Q+
Sbjct: 82 ARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEA 141
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q P Q QP +Q
Sbjct: 142 PAPQPVHSAAPQPAVQTVQPAVPEQ 166
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH-- 146
QQQ Q Q+ Q QQQ Q+ Q+ Q + L QQ ++Q + Q+
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLS 114
Query: 147 QQQQQQQQQPPQQPQQ 162
+ Q++ +
Sbjct: 115 ELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
H + QQ Q Q Q QQ QQ QQQ QP QQP Q P QQ +
Sbjct: 199 HAPKPTQQPTVQNPAQQP-------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
Query: 172 RDGAH 176
+ H
Sbjct: 252 TEQGH 256
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQP-PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ Q S P H Q Q QQ Q Q + Q Q QQ Q
Sbjct: 63 AQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL-------QPPQPQQPMQ 115
Query: 148 QQQQQQQQPPQQPQQQQP 165
Q PP PQ P
Sbjct: 116 PQPPVHPIPPLPPQPPLP 133
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 23/93 (24%), Positives = 56/93 (60%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ + + + + +Q+ + Q++QQQ +++ ++ ++QQQQ+Q+++ Q + Q+ QQ
Sbjct: 10 QQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQH 69
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + QQ+ +++ +Q QQQ+ Q+ Q+R
Sbjct: 70 EPRHRPTCQQRCERRYEKEQQQQQRQYQECQQR 102
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q Q Q +QPP + +Q Q+ H+ Q Q
Sbjct: 104 PQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPV-----HSAAPQPAVQT 158
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
Q +QQ P++ + P+ ++ R ++
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVII 191
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQQ Q Q+ Q QQQ + Q+ Q+ Q L AQQQ + + +Q
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQ--------LESLIAQQQAELDRLERQL 106
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+Q + ++ R+D
Sbjct: 107 ETLQKQLSELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
KA + QQ+ +Q +++ ++ QQ + +QQ Q + ++ +
Sbjct: 2 KAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAI 61
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
QQQ+ +Q + + ++Q Q+ Q R L
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKL 95
|
Length = 122 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
QQ+ +QQ + + Q Q + QQQ+L + L ++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 151 QQQQQPPQQPQQQQPQQQQQ 170
++ + Q+ +Q++ + Q
Sbjct: 205 EKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 12/89 (13%), Positives = 46/89 (51%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ K +Q ++ ++Q+ +Q +Q++ +Q ++ +Q +Q Q ++ Q + +Q
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + ++ ++ ++Q +++ +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + QQ + +Q QQQ + SQ P Q Q +Q + Q Q LLQ A Q
Sbjct: 161 QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ + P+ ++ ++R
Sbjct: 221 SK---PQQAAPVTRAADAPKPTAEKKDERR 247
|
Length = 319 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
++ +I+ +++QQ+ + Q +Q+QQ ++ +Q+QQ +Q Q + Q
Sbjct: 25 FLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ-QRASFMAQAQEA 83
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q Q + ++ + +Q +++Q+
Sbjct: 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ--QQQQQQLQMQQILLQRHA 136
L +A+++ +Q +++ ++ QQ + + +Q Q + + L + A
Sbjct: 3 AARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIA 62
Query: 137 QQQQQ-----HQQQHQQQQQQQQQ 155
QQQQ+ Q + ++Q Q+
Sbjct: 63 QQQQELEQAEKQVEQAREQWQEAN 86
|
Length = 122 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 15/91 (16%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 66 RTNEKHSEVAASYIETQLIKARE-QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+ + E+ E +L + E ++Q++++ ++++++ ++++++ Q+Q++Q++ Q+Q
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ + + A++ + +++H QQ +Q++
Sbjct: 112 KEEAEARAREEAERMRLEREKHFQQIEQERL 142
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 15/72 (20%), Positives = 40/72 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + +A EQ++ +Q ++++ + Q+QQ Q ++Q Q +Q+QQ+ Q ++ ++ + +
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Query: 140 QQHQQQHQQQQQ 151
+ + +
Sbjct: 151 AAKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-05
Identities = 18/101 (17%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 82 QLIKAREQQ--------QQQQQQQQQQQQQQQQ---SQQPPHQQQQQQQQQQQQLQMQQI 130
+ ++ + Q+ + Q ++ QQQQ+ Q+ +++ + +Q+L+
Sbjct: 282 RRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQ 341
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
LQ+ Q++ + Q + +Q +Q+ ++ ++Q ++++QR
Sbjct: 342 RLQQQNPQRRIERAQQRLEQLEQRL--RRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 14/100 (14%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Query: 79 IETQLIKA-REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--- 134
+E Q KA RE++++ ++++++++++++ ++ + QQ++ + ++ ++ ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVAR----LRAQQEEAEDEREELDELRADLYQE 211
Query: 135 -HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ ++++Q +++ +++++Q+Q Q+ +++Q +++++R
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQ 251
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 22/78 (28%), Positives = 28/78 (35%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+Q + + QQ + P Q Q QQ Q Q ++ Q Q Q QQ
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQ 113
Query: 151 QQQQQPPQQPQQQQPQQQ 168
QQ P P QPQ
Sbjct: 114 PTPQQEPYYPPPSQPQPP 131
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A + Q + + Q +QQQ ++++Q++ Q QQ+ + + Q
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q +Q++ QQ Q +++Q+Q
Sbjct: 704 VQ------ETEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQ Q Q Q Q+ Q+Q+ + L+ Q L + +QQ +Q +
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDEL 118
Query: 150 QQQ 152
QQ+
Sbjct: 119 QQK 121
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ- 139
+ +K + QQ QQ Q++++Q+ ++QQ +Q + +++ + + Q
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 140 ----------------------QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q+ H + Q + + + ++ +QQ
Sbjct: 285 RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 12/91 (13%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--LLQRHAQQQQQ 141
+A E ++Q+ +Q +Q++ +Q++ +Q +Q +Q + + +Q + A + +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ +++ +++ Q ++ + + + +
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 106 QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q Q QQQQ Q Q H Q QQQQ P QP +Q
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPY----HQQMPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 166 QQQQQ 170
QQQQ
Sbjct: 57 PQQQQ 61
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-QQQQLQMQQILLQRHA 136
++ +L +A E++ + +Q+ ++ Q+ Q Q P + ++ QQ+ +Q + ++++ + ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 137 QQQQQHQQQHQQ 148
+++Q+ + QQ
Sbjct: 376 RKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 88 EQQQQQQQQQQQQQ---------QQQQQSQQPPHQQQQQQQQQQQQ--LQMQQILLQRHA 136
+QQ Q QQQ QQ QQ PP QQ + +QQ Q+ QI
Sbjct: 1 QQQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI------ 54
Query: 137 QQQQQHQ--QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q + + +Q Q QQQQ Q+ QQ Q ++ ++
Sbjct: 55 PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R ++ ++ Q+Q Q+QQQ Q+ +Q++ Q Q + Q Q IL Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQE--------EQEEAQAQAEAQKQAILRQ 45
|
Length = 110 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y Q Q Q Q Q + + + + ++ L A
Sbjct: 112 YYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAA 171
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + +P + + Q
Sbjct: 172 EIYSDASHRVELAKNFMEPQAETEAQPEA 200
|
Length = 332 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
PH + + + Q+Q+ Q +Q L+ Q ++ Q+Q QQ Q Q QP QQPQQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEK-QEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
Query: 171 RRDG 174
+G
Sbjct: 202 MEEG 205
|
Length = 222 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 14/81 (17%), Positives = 37/81 (45%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ QQ+ +Q Q +++ Q Q + QQ L + +++ Q+ + Q
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 153 QQQPPQQPQQQQPQQQQQRRD 173
+Q ++ + +++Q+R++
Sbjct: 200 LEQLQEKAAETSQERKQKRKE 220
|
Length = 1123 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ R+ ++ Q+Q Q+QQQ Q++Q ++ Q Q + Q+Q ++QIL
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQ------EEAQAQAEAQKQAILRQIL 47
|
Length = 110 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-05
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 87 REQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q + Q LQ H +QQQ+
Sbjct: 7 REQQLQQELLLLKQQQQIQKQLLIAEFQKQHENLTRQHEAQ-----LQEHLKQQQELLAM 61
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+QQ+ +++ + Q+Q+ + ++ RR+
Sbjct: 62 KRQQELLEKERKLEQQRQEQELEKHRRE 89
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPH---------QQQQQQQQQQQQLQMQQILLQRHA 136
A+ ++Q++ Q Q Q Q + +Q P Q Q QQQ Q
Sbjct: 361 AQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP---LGWP 417
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG--NTNGLLGNDSLMRQ 194
+ + + P + Q + L +
Sbjct: 418 RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS-LPLSQD 476
Query: 195 NPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL---LDPNHASYI 245
P + A++ + K VL S KQ GE + L ++P A+ I
Sbjct: 477 LP-QPQSTASQGGQNKKLAQVLA-SATPQMQKQVLGERLFPLVEAIEPALAAKI 528
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + K EQQ ++ ++Q+ +Q +Q+ + ++ +Q +Q + Q Q+ A++
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK-QAEEKQKQAEEA 124
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q + + + + + ++ + Q +++ +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 12/103 (11%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 79 IETQLIKAREQQQQQQQQQ-----QQQQQQQQQSQQPPHQQQQQQQQQQQQLQ---MQQI 130
++ Q I+ RE+++Q++ ++ +Q + ++ Q+ + Q+++++Q++L+ +
Sbjct: 76 LQEQ-IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFN 134
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ +++++ +++ ++ + + Q + ++++ + +++ R
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 9e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 9e-05
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q+ + L + ++ QQQ + QQ
Sbjct: 262 RAELLQRLQQLQQRLAR--AMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319
Query: 153 QQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLK 212
+ Q + + + +Q+ +R + L +QNP R+ + +
Sbjct: 320 RLQRALERRLRLAKQRLERL---------------SQRLQQQNP------QRRIERAQQR 358
Query: 213 LPVLRDSLDDAA------MKQRFGENMGQL--LDP 239
L L L A +QR QL L P
Sbjct: 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSP 393
|
Length = 438 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
A E+H T+L K + Q +Q Q S Q +++Q QQQ
Sbjct: 187 AMVFEQHKSA-----RTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241
Query: 125 LQMQ-QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q L + QQ+ ++Q QQ + QPQ
Sbjct: 242 QQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQ 279
|
Length = 1047 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM-QQILLQRHAQQQQ 140
+ I A + +Q + + +Q +Q+ QQ + QL ++ L + +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 141 QHQQQHQQQQQQQQ--------------QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
Q++ ++ + + + + + + R A
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Query: 187 GNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENM-------GQLLDP 239
L+ G +L PV + +RFG+ G ++
Sbjct: 281 PEKMLISSTGGFGAL------RGQLAWPV------TGRILRRFGQADGGGLRWKGMVIGA 328
Query: 240 NHASYIKSAAA 250
+ + +K+ A
Sbjct: 329 SAGATVKAIAD 339
|
Length = 420 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 47/297 (15%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
+ ++++A+ Q Q+ + + LQ
Sbjct: 67 ETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGY---EASTDPEYIPDLQPDP 123
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L + + Q Q + Q Q Q + ++ + Q Q+R A L +L
Sbjct: 124 SLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQG 183
Query: 190 SLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAA 249
RQ A + E+ Q + Q+ A
Sbjct: 184 MPPRQ-----AAFPQQGPPEQ-----------PPGYPQPPQGHPEQVQPQQFLPAPSQAP 227
Query: 250 AT----GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMG 305
A Q Q Q P + + P P+
Sbjct: 228 AQPPLPPQLPQQPPPLQQP---QFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284
Query: 306 IPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLL 362
PG QG N P +P L+QQ + + PQ Q+ L+ Q ++ L
Sbjct: 285 HPGLPQGQNAPL----PP-PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPP--QQPQQQQPQQQ 168
P QQ QQ QQQ Q Q + Q QQ Q Q Q QQ Q P QPQ QQPQQ
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 169 QQ 170
Sbjct: 811 VA 812
|
Length = 1355 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 12/93 (12%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+L Q++ +++++Q+++++ ++ ++ Q+Q+ Q+ +++Q++ ++ LQ +++
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRR---QKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 142 -HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ ++Q + ++ + ++++ ++ + RR+
Sbjct: 260 ERERMLEKQAEDEELEQENAEKRRMKRLEHRRE 292
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 9/114 (7%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 66 RTNEKHSEVAASYIETQLIKAR------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ 119
R + E E + + E + + Q+++++Q++ +++ + ++ ++++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 120 QQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+++++ + +++ + + +++ + +++ + +++++++ ++ + QQ++ D
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K++ Q+Q+ Q++Q++ ++ + QS++ QQ Q Q Q Q Q QQ
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS--QQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K ++ Q + Q+++++ Q+++Q +Q ++ ++ +QQ+LQ +Q LQ+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q QQ QQ QQ+ Q
Sbjct: 96 QAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQ 124
NE E L A +Q+Q ++Q Q + Q++++ +Q + Q+
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 125 LQMQQILLQRHAQQQQQ-HQQQHQQQQQQ-QQQPPQQPQQQQPQQQQQRRD 173
LQ +Q L+ + +QQ + Q +Q Q Q +QQQ + + D
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 637 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 687
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 746
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 747 EIRYWSINNGSCTRVFKVESFCCWCV 772
++ WSIN G K ++ C CV
Sbjct: 599 SVKLWSINQGVSIGTIKTKANIC-CV 623
|
Length = 793 |
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 18/76 (23%), Positives = 42/76 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QL R+ Q+QQ Q+++++++++Q ++ +Q Q + L+ Q+ L++ ++Q
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Query: 140 QQHQQQHQQQQQQQQQ 155
Q ++Q+ QQ
Sbjct: 339 LDSANQQLAKEQKAQQ 354
|
This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q I+ Q QQ+ + + + Q+ + P Q++QQ + +Q Q + QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPR-------QQQNR 485
Query: 142 HQQQHQQQQQQQQQPPQ-------QPQQQQPQ---QQQQRRD 173
Q +Q+Q Q Q P+ +P+ QPQ Q RR
Sbjct: 486 SNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW 527
|
Length = 582 |
| >gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 11/83 (13%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K E ++ T+ + ++QQ++++ +Q+++++++ Q+ + Q+ Q+
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKL---QE 325
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQ 152
++ A+ +++ +++ ++ +Q+
Sbjct: 326 ERKEQLAKLRKEEKEREKEYEQE 348
|
This family of proteins has no known function. However, one of the members is annotated as an EF-hand family protein. Length = 349 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 7/85 (8%), Positives = 41/85 (48%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ ++++ Q+Q++Q ++ ++Q +Q+Q ++ + + + A++ +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQ 169
+ + +++ + + +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKK 186
|
Length = 387 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQ-------QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
KAR Q +QQQ ++++Q +Q QQ + + ++Q Q+ +Q+ ++QQ+ +R +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Query: 138 QQQQ------------------------------HQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q + + + Q +Q +
Sbjct: 724 QLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEEN 783
Query: 168 QQQRRDGA 175
+ RD
Sbjct: 784 NAENRDNN 791
|
Length = 1068 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 66 RTNEKHSEVAASYIETQLIKAR-------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ 118
K E + + + + Q+Q QQ+QQ+ Q Q + ++ + +QQ+
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQR 128
Query: 119 QQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+Q ++ L+MQ+ + R ++ +++ + +++
Sbjct: 129 RQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQ+ ++ + ++ + +Q Q++ + + + + + + ++ QQ
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 147 QQQQQQQQQPPQQPQQQQPQ 166
Q Q + Q+ + P Q
Sbjct: 590 QLQARIQRLAARAPAWLAAQ 609
|
Length = 1486 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ Q Q QQQQ QQP HQQ Q Q Q H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQ------QGHFMPPQPQPYPKQS 56
Query: 149 QQQQQQQPPQQPQQQ 163
QQQQ Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
QQ Q Q L Q LQ+ + Q+Q + +QQ + + Q +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
|
Length = 390 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ Q Q Q + + Q+ Q+Q+ + + QQ A +QQ +
Sbjct: 59 KQQAQNQTATNDALANQLTAL--QKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Query: 149 QQQQQ 153
+ QQ+
Sbjct: 117 ELQQK 121
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
IKA Q +QQ Q+ + Q + +S+ ++ +QQ ++ Q+ LLQ Q+ +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 144 QQHQQQQQQQQQPPQQPQQQQP--QQQQQ 170
H+ ++ QQ Q QQQ
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQQQQQ 141
IK Q+ Q + + Q QP +Q Q ++ Q + +
Sbjct: 101 IKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + + + +
Sbjct: 161 QLRVELAELAAEIYSDASHRVELAKNFME 189
|
Length = 332 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL-----QRHAQQQQQHQQ 144
+ Q+Q +++ ++ Q + Q+ ++++ Q+++Q+LQ Q L + Q+ QQ QQ
Sbjct: 34 KAAQKQLEKEFKKLQAELQK----KEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQ 167
+ QQ+QQ QQ QQ QQ+ Q
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ RT ++ ET+ AR + Q+ +Q+++ +Q+ ++Q + QQ+ +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q L+ A+Q++Q + Q Q Q Q+Q Q + Q
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
|
Length = 499 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ K E+ QQ+ ++ Q +Q QQ +++QQ ++Q Q +Q+ ++
Sbjct: 32 VEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQE---HVQQQMKE 88
Query: 139 QQQHQQQHQQQQQQ 152
+ +QQ Q++QQ+
Sbjct: 89 IEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-04
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQH 142
++ R Q+ +++ + +Q+ ++ SQ+ Q Q++ ++ QQ+L+ + L+R ++Q +
Sbjct: 317 LQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKR 376
Query: 143 QQQHQQQQQQQ 153
++Q + QQ
Sbjct: 377 KRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I + A EQ+QQ+ Q+ ++ +Q+QQS + Q Q+ Q Q +L +
Sbjct: 41 IANRWQDA-EQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDV 99
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+ +Q ++++Q+ + QQQ QQ
Sbjct: 100 ATARDEWLEQLEREKQEFFKALQQQTGQQ 128
|
Length = 250 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 87 REQQQQQQQ-----QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+E+QQQQ+Q Q++ +Q QQ+ Q P + QQ+ +++ + +Q QR Q+ QQ
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 142 H---QQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+Q ++QQQ Q+ ++ Q+ + + +
Sbjct: 102 RCQQQEQRPRRQQQCQRECREQYQEHGRGEGE 133
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 17/99 (17%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
L + + + ++ +QQQ+ + + + + Q ++Q+L+ L QR Q Q
Sbjct: 293 EHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER---LTQRLNPQIQ 349
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
+ QQ+ QQ +++ + ++ +++ ++ + + L+
Sbjct: 350 RQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLS 388
|
Length = 440 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQ-------QSQQPPHQQQ 115
A+ E ++ A + +E ++A E+++ Q+Q QQ+QQ+ Q + Q +QQ
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
++Q ++ ++Q + +L Q ++ + + +++
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 112 HQQQQQQQQQQ--QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
H +QQ Q Q L Q LQ + Q+ +Q+ + +QQ + Q +QQ +
Sbjct: 57 HGKQQAQNQTATNDALANQLTALQ---KAQESQKQELEGILKQQAKALDQANRQQAALAK 113
Query: 170 Q 170
Q
Sbjct: 114 Q 114
|
Length = 390 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 21/90 (23%), Positives = 49/90 (54%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
V+ S +L + + + +++ Q+ ++ Q+ H++ Q +Q+QQ+L+ ++ L
Sbjct: 13 VSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLL 72
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ 163
+Q Q+H QQ ++ + +Q Q+ QQ+
Sbjct: 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ Q + Q+ + + + QQQ Q +Q Q + Q + Q+ L
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQ---LQLLIESLAQLSSEFQE-LAN 112
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHL 177
++ + + QQ +Q P + ++ ++Q ++R
Sbjct: 113 EIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESA 156
|
Length = 448 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
S A+ +Q+Q +Q Q + + +Q + + Q + Q+
Sbjct: 102 PSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKA 161
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q ++ + + +Q Q+ P+Q + +
Sbjct: 162 RTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ----------------QQQQQ 124
Q + A +QQQ P Q Q
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 125 LQMQQILLQRHAQQQQQHQ-QQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ Q QR QQ QQ Q QQQ Q+ + Q QQQ
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQ 179
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A ++ QQ + ++ + Q +Q Q P ++Q+++ +++Q Q + L Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQ 162
Q+ +Q+ + QQ Q ++ +Q Q
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQ 727
|
Length = 1068 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQ--------------- 108
+A T ++ EV T ++AR + +Q + Q QQQ +
Sbjct: 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL 365
Query: 109 --------QPPHQQQQQQQQQQQ----------------------------QLQMQQILL 132
Q ++Q +Q QQQ Q Q+ L
Sbjct: 366 AGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLR 425
Query: 133 QRHAQQQQQHQQQHQQQQQQQQ--QPPQQPQQQQPQQQQQRR 172
QR Q Q ++ Q Q Q Q Q Q+ + R
Sbjct: 426 QRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMR 467
|
Length = 1047 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
E + T + Q +++ Q Q + QQQ+ + +++QQ+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQ 152
+ L ++ A+ Q+ +Q+ ++ Q
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ--- 145
+QQ + +Q Q +QQQ +Q+Q Q Q + Q L R Q Q+ Q
Sbjct: 467 RQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRR 526
Query: 146 ----------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ QQQQ QP + Q + + + G N N S
Sbjct: 527 WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNNTVS 581
|
Length = 582 |
| >gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 98 QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q Q P H Q Q + Q Q +H QQ QHQ+QHQQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHH----QHQQQDLQHQEQHQQH 338
|
ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure. Length = 508 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQ 144
RE + +QQ + +Q+ + +Q Q +QQ Q+ ++ + L Q A+ Q Q Q
Sbjct: 79 LRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
Query: 145 QHQQQQQQQQQP 156
+ +Q++ +
Sbjct: 139 LEELEQEEFRTV 150
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 112 HQQQQQQQQQQQQLQM--QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ QQQQ Q+Q++++ Q LQR +Q +Q Q QQ Q P Q Q Q
Sbjct: 160 NGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGTQSLGTQSQ 216
|
Length = 216 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ---QQQQQQQQQLQ 126
K ++ A + +++A Q + Q + Q + + + ++ Q +L
Sbjct: 89 KKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD 148
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q LL+ + Q + +
Sbjct: 149 AAQALLRAAEALVEAAQAALASAKLNLEY 177
|
Length = 372 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ--QQLQMQQILLQRHAQQ 138
Q + R QQ QQ+ Q QQ + + Q QQQ + QQ +
Sbjct: 138 DQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDES 197
Query: 139 QQQHQQQHQQQQ-QQQQQPPQQPQQQQPQQQQQRR 172
+ + + +Q+ + + + +Q +++
Sbjct: 198 EALVRLREADGTLEQRIKGAEGGGAMKVLKQPKKQ 232
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/86 (15%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 82 QLIKA---REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL+KA +++ ++ ++++++Q++Q + + +Q ++ + A++
Sbjct: 5 QLLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----------AEK 53
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQ 164
++ ++ ++Q+Q + +Q Q +Q
Sbjct: 54 AERDRELNRQRQAEAEQKAIVAQIKQ 79
|
This domain, found in various prokaryotic proteins, has no known function. Length = 177 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q+++ + ++ QQ QQ ++ + Q++Q ++QQ L+ + ++ Q+
Sbjct: 222 QVLEKELKHLREALQQTQQSHAYLTQKR---EAQEEQLKKQQLLKQLRARIEELRAQEAV 278
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ ++ + ++ P + Q +Q+ H
Sbjct: 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
K ++Q+ Q++Q++ ++ + Q + Q+ P QQ Q Q Q QQQ Q
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQILLQRHAQQQQQHQQQHQ 147
+ + QQ P Q Q QQQQ Q Q Q QQ Q QQ
Sbjct: 56 VAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPT 115
Query: 148 QQQQQQQQPPQQPQQQQPQQQQ 169
QQ+ PP QPQ QQ Q
Sbjct: 116 PQQEPYYPPPSQPQPPPAQQPQ 137
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ---------PPHQQ 114
+ + N + E +E L Q+QQQ+ Q +Q ++ +
Sbjct: 839 LRQLNRRRVE-----LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLA 893
Query: 115 Q-------------------QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
QQ QL+ +LQ +Q +Q +Q +QQ QQ Q+
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD 953
Query: 156 PPQQ 159
QQ
Sbjct: 954 AKQQ 957
|
Length = 1486 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 18/104 (17%), Positives = 50/104 (48%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+K + +A+ +++Q++ + + Q +Q+ Q + +Q + ++ QQ Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q + +Q+ QQ + +Q +++++Q + Q +Q+ +
Sbjct: 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277
|
Length = 499 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 16/77 (20%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQ--QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K +++Q + ++ ++ Q+ +++ + + +++++++LQ + QR
Sbjct: 19 AQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q+ QQ Q+ QQ++ Q+
Sbjct: 79 QKLQQDLQKRQQEELQK 95
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
+L + RE+ Q+ + +++Q QQ+ QQ QQQ+ +Q + + ++ L + Q+
Sbjct: 173 AELKQTREELAAQKAELEEKQSQQKTLLY--EQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 141 QHQQ 144
QQ
Sbjct: 231 DQQQ 234
|
Length = 428 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
I + Q + Q+ + + HQ++ + +Q LQ Q + QQ Q +
Sbjct: 252 IVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEK 311
Query: 144 QQHQQQ----------QQQQQQPPQQPQQQQPQQQQQR 171
+ ++Q +Q++ + ++ Q P Q R
Sbjct: 312 LEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILR 349
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + Q+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGN 87
Query: 159 QPQQQQP 165
P +QQ
Sbjct: 88 NPARQQM 94
|
Length = 145 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP----------------HQQQQQQQQQQQQLQMQQ 129
+++Q +Q QQQ +Q+ + P H +Q+ +Q+ L Q
Sbjct: 376 TSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQI 435
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+ Q Q Q Q+Q Q+ + +Q+ ++ QQ D
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAD 479
|
Length = 1047 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 8e-04
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
K ++ +QQ ++Q++ Q Q+ + + +++I Q+H Q
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
Query: 140 QQHQQQHQQQ--QQQQQQPPQQPQQQQPQQQQQ 170
H Q Q+ Q+ Q ++ Q +Q
Sbjct: 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQ--------QQQQQQSQQPPHQQQQQQQQQQQ 123
S+V + + I+ Q + Q QQ+ Q Q+ Q Q+ Q
Sbjct: 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQ 245
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ + ++ +Q Q+ + + +Q+ Q Q +QQ
Sbjct: 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292
|
Length = 499 |
| >gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
F E AA E + +++ +++ + +QQ+ + + + + +
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83
Query: 123 QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
Q + AQ +Q + Q Q Q Q
Sbjct: 84 GYEAGYQ---EGLAQGLEQGLAEGQAQAAPQAAQLQA 117
|
Length = 246 |
| >gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--L 131
AA+ L +A QQ Q Q++ + Q Q+ + + +++I L
Sbjct: 15 GAAAAAAASLDQALAAAQQTVAAAAQSQKKIDKW-----ADQTQELLAEIRQLLKEIENL 69
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q Q+ Q Q+ QQQ
Sbjct: 70 RVYNDQLQRLVANQQQEIASLQQQ 93
|
This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
+ QL ++ Q+ Q+Q+ + +QQ ++ ++QQ +Q +LQ
Sbjct: 72 LANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQ 119
|
Length = 390 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 83 LIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQH 142
L +++Q Q Q + Q + Q+ Q + Q + L R A QQ
Sbjct: 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT 229
Query: 143 QQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQ+ Q Q QQ + Q +++ R
Sbjct: 230 AQAIQQRDAQISQKAQQIAARAEQIRERER 259
|
Length = 499 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.001
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQ-----QPPHQQQQQQQQQQQQLQMQQILL 132
Y + Q A + Q QQ QQ Q Q QQ Q QP +QQ QQ Q Q + LL
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850
Query: 133 QRHAQQQQQHQ 143
R+ + H+
Sbjct: 851 MRNGDSRPLHK 861
|
Length = 1355 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 23/90 (25%), Positives = 28/90 (31%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A E QQ Q Q Q + QQP QQ +Q Q Q
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
QQ +Q Q +QQ Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
|
Length = 1355 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 12/90 (13%), Positives = 63/90 (70%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
T+L+ + +Q ++Q++Q++Q++++Q+ Q +++ +++ +++L+ ++ ++ ++ +
Sbjct: 25 TRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAR 84
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ +++ +++ +++++ Q+ Q++ +Q+++
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + QQ Q + + Q QQ+ +Q + +I L Q+ + Q+
Sbjct: 61 LNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLP---NQEPAYYMQNH 117
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ + Q P QPQ Q P Q + G +S
Sbjct: 118 RSEPIQ---PTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
|
Length = 332 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
L + R Q + Q Q Q Q+Q Q S Q + + Q++ + L A Q
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
++ ++ QQ Q QQ+ Q Q
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQ 242
|
Length = 499 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ-QQHQQQ 149
Q + Q Q P Q Q Q+ L Q + Q QQ
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 150 QQQQQQPPQQPQQQQPQQ-QQQRRDGA 175
Q Q+ Q QQQ + Q+ DGA
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGA 192
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E+ KA ++Q +++ +++Q + ++ + + Q+ +++ Q+ + + ++ ++
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKEL----QKLKEKLQKDAATLSEAAREKKEKEL 67
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ 163
Q+ Q+ Q++QQ+ QQ Q+ QQ+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQE 91
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +A + Q++ + +Q Q Q P ++ QQ Q ++ + +Q L + ++
Sbjct: 268 NVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERT 327
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+Q + + ++ Q PQ + Q +Q RR A
Sbjct: 328 RQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKN 366
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39
L+ I +YL++ + +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQ--------QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
REQQ QQ+ +QQQQ Q Q Q +Q + Q Q+ Q Q++L + Q+
Sbjct: 5 REQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQE 64
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQ 163
+ Q++ +QQ+Q+Q+ Q+ +QQ
Sbjct: 65 LLEKQRKLEQQRQEQELEKQRREQQ 89
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 676 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 727
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 728 SLDFHPNKDDLICSCDGDGEIRYWSINN 755
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.001
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + QQ+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 159 QPQQQQ 164
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 9/127 (7%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q S++ + Q+ M QQ ++ Q
Sbjct: 11 QAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTG 70
Query: 155 QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLP 214
P P Q Q++ + G P N + E P
Sbjct: 71 ANNPAPSVMSPAFQSQQKFSS---------PYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121
Query: 215 VLRDSLD 221
+ L
Sbjct: 122 ISDLFLP 128
|
Length = 861 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
Q + +Q+ H + +++ + Q QQ Q+ QQ
Sbjct: 197 HMNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQG--QKQVLSPQQRFLHG 254
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
++ + PP + G
Sbjct: 255 MERYEASGMPPPAEWAGSNGLHVLPGRREEVPRGIFR 291
|
Length = 505 |
| >gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 90/495 (18%), Positives = 159/495 (32%), Gaps = 65/495 (13%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q QQ + + + + +++Q QQQ Q L+ +Q+++ ++Q +QQ
Sbjct: 248 QPQQHETSPAESYGAAAAGLNSRENKRKQMLPQQQQQSFDQLVSPRKEQKREERRQLKQQ 307
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEE 209
+ Q+ +Q QQ+ Q D G L DS R N A+A
Sbjct: 308 LRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIGNLSEDSPSRSNSLDASAPDNGGDRP 367
Query: 210 KLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQ 269
+ + D M + P + AAA + Q
Sbjct: 368 RSDNEMS----DLDMMSKMMSHKPMHPNKPGGFVDMDRAAA---------------LYEQ 408
Query: 270 VQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPL 329
Q + T KS++ GS G + G TLK T L +
Sbjct: 409 EQRMVKDDGKGTA-PKSDLPEREGMLRQSCIGSPGPSSGLDGEGLAETLKQELNTSLSQV 467
Query: 330 -----------RSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRR 378
R L +Q KP AP+ + ML Q +L +++ + + +D +
Sbjct: 468 VDTVVKRFVHQRRALSKQAKPERAAPEQLFKDLMLPSQ----MLDRKSPRTHTVNDRGQC 523
Query: 379 FRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQ 438
F + +S + D +NV + M Q Q
Sbjct: 524 F----GDPDISTAAMFIIPKPPDSFANVAAAALYNSPF---------------CMPQTPQ 564
Query: 439 QQQQQQQQNS-------NPQQHTLSNQQ--SQSSNHNLHQQDKMGPAGSVTLDGSMSNSF 489
Q +Q + ++H +++ + ++ + L +D +GPA +S
Sbjct: 565 PQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPLHPSSL 624
Query: 490 RGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS--TPSTHTPGDVISMPA 547
+ P++ + P S + P +P PS PG P
Sbjct: 625 SASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDRDSPD 684
Query: 548 LPHSGTTSKPLMMFG 562
LP T+ P ++
Sbjct: 685 LPRPTTSLHPKLLSA 699
|
The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 80 ETQLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
E +L++ +E+Q+Q +Q Q+ +Q +QQ + P ++ Q+ Q Q Q
Sbjct: 99 EKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQ 158
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q+ P Q +P Q
Sbjct: 159 PQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQ 190
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 8/111 (7%), Positives = 50/111 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ +++++ ++++ +Q + ++ ++ + + + ++ ++ Q
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQN 195
++++ ++ ++ ++++ ++ R D G+ +G G R+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 19/119 (15%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQ--------QQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
EK EVA + Q +A +++++ Q++ +++++Q+++ ++ +++++
Sbjct: 179 EKEREVAR--LRAQQEEAEDEREELDELRADLYQEEYERKERQKEK------EEAEKRRR 230
Query: 121 QQQQLQ---MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q+Q+LQ +QI + Q+++ +++ ++++ ++Q + +Q+ ++++ + H
Sbjct: 231 QKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQS-QQPPHQQQQQQQQQQQQLQMQQILLQRHA-- 136
ETQ ++ Q ++ Q + S +QPP +Q + + Q A
Sbjct: 19 ETQKELSKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPA 78
Query: 137 ----QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q QQ Q Q Q Q P Q Q PQQ +++
Sbjct: 79 PQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQE 119
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R +Q QQ+ QQ + + + Q+ + +++QQQQQ+Q Q Q+ QQQ+Q ++
Sbjct: 58 RYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQE----CQQRCQQQEQRPRRQ 113
Query: 147 QQQQ----QQQQQPPQQPQQQQPQQQQQRR 172
QQ Q +Q Q+ + + Q+ ++ R
Sbjct: 114 QQCQRECREQYQEHGRGEGENINQEGEEER 143
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +Q + Q+QQ Q Q Q QQ + L + + Q + Q QQ +
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENT 842
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
+Q + Q Q +QQQQ
Sbjct: 843 TRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQQ Q Q+ Q QQ+ + AQ+ Q+ Q + QQQ + ++Q Q+Q
Sbjct: 54 GQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
|
Length = 391 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 99 QQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ 158
Q + QS Q + + + Q+ Q + QQ + Q +QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQN 489
Query: 159 QPQQQQPQQQQQRRDGAHLLNGNT 182
+Q Q Q R G + L T
Sbjct: 490 NQRQSQGPNQGPRGQGGYNLRPRT 513
|
Length = 582 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A +Q Q QQ+ Q Q+ Q +Q +++++Q Q+L+ Q L++ Q + + Q
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Query: 146 HQQQQQQQQQPPQQPQ------QQQPQQQQQRRDGAHLL 178
+ + +QQ Q+ Q Q+ Q Q Q + A LL
Sbjct: 285 YVRLRQQAAAT-QRGQVLAGAAQRVAQAQAQAQAQAQLL 322
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL---LQRHAQQQQ 140
I+ RE+Q Q+ + Q + +Q+ + +Q + +QQ Q Q+L QR AQ Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQA 313
Query: 141 QHQQQHQQQQQ-------QQQQPPQQPQQQQP 165
Q Q Q Q + ++ P++ ++Q+P
Sbjct: 314 QAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
Length = 499 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q++ + +Q +Q P + QQ Q ++L+ ++ ++ + ++
Sbjct: 276 DTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLT 335
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
++ Q P Q + Q + +Q R L N N L
Sbjct: 336 KRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKL 373
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ QQ+ +QQQQ Q Q + Q+Q + +Q + Q LQ H +QQQ+ QQ
Sbjct: 6 EQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQ---LQEHIKQQQEMLAIKQQ 62
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ ++Q + Q+Q+ + ++QRR+
Sbjct: 63 QELLEKQRKLEQQRQEQELEKQRRE 87
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.002
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 105 QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQ 164
Q Q P QQ+ Q Q Q QQ+Q + +L Q+ Q + QQ Q Q QQ QQ Q
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 165 PQQQQQRR 172
+QQ
Sbjct: 88 LNARQQVL 95
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ I A E + ++ Q Q Q Q+Q Q +QQQ + + + QR A Q Q
Sbjct: 119 RQIAASEARAERLQADLQLAQAQEQ--------QVAARQQQARQEAVALEAQRQAAQAQL 170
Query: 142 HQQQHQQQQQQQQQ 155
+ Q Q +Q Q QQ
Sbjct: 171 RKLQRQIRQLQAQQ 184
|
This family of proteins has no known function. Length = 192 |
| >gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 85 KAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+ + + Q+Q Q +Q+ QQ + Q Q+ + ++Q QQ +Q+Q Q+ Q++ +
Sbjct: 20 ELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQ------QQVEQERAKRL 73
Query: 144 QQHQQQQQQQQQ 155
+Q Q Q +Q
Sbjct: 74 EQKNQLLFQIEQ 85
|
This bacterial family of proteins has no known function. Length = 131 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
QL+ R Q Q Q Q QQ QQ QQQ + Q
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP 155
|
Length = 172 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q QQ + QQ QQQ PQQ PQ
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
|
Length = 172 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 97 QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ + + QQQ QQQQ++QQQQ++ Q Q IL Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQAILRQ 39
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ + QQQQ ++QQQQ+ +QQQQ++ Q+Q ++QIL
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQE-------EQQQQEEAQKQAILRQIL 41
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+T L QQ++Q Q Q + + Q + + Q + + AQ
Sbjct: 110 IDTVL--LEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQC 167
Query: 139 Q----------------QQHQQQHQQQQQQ-----------QQQPPQQPQQQQPQQQQQR 171
+ ++ +++ Q + Q Q + +Q
Sbjct: 168 EAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAV 227
Query: 172 RDGAHLLNGNTNGLL 186
+ +GLL
Sbjct: 228 AE-KQARIEANDGLL 241
|
This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297 |
| >gnl|CDD|197399 cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.002
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 87 REQQQQQQ----QQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
RE+Q QQ+ QQQQQ Q+Q + +Q + +Q Q Q Q+ L++QQ LL QQ+
Sbjct: 5 REKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHLKLQQELLAMKQQQE 64
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQ 164
++Q +QQ+Q+Q+ + ++QQ
Sbjct: 65 LLEKEQKLEQQRQEQELERHRREQQ 89
|
This family consists of the glutamine-rich domain of histone deacetylase 9 (HDAC9). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 662 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 717
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 718 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
GH+ V + FHP+ +++ S D + W + G V K
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165
|
Length = 493 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
+Q +QQQQQ QQQ Q + P QQ Q QQ
Sbjct: 49 DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 104 QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ--QQQPPQQPQ 161
Q +Q +Q Q +QQ Q+ ++ +Q+Q Q Q+Q QQ +QQ Q
Sbjct: 113 QLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQS 172
Query: 162 QQ--QPQQQQQR 171
+ Q QQQ R
Sbjct: 173 RTTEQSWQQQTR 184
|
Length = 319 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 81 TQLIKAREQQQQQQQQ--QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL + E Q+QQ Q Q Q Q Q P +Q Q ++ Q+ AQQ
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQL-----AQQ 837
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+++ + + +QQ +Q QQQQ QQ
Sbjct: 838 LRENTTRQGEIRQQLKQDADNRQQQQALMQQ 868
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 89 QQQQQQQQ------QQQQQQQQQQSQQPPHQQQQQQQQQQQQL----------------Q 126
QQQQQQ + QQ+ + QQ Q +++ Q QL +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 127 MQQILLQRHAQQQQQHQQ---QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q A +QQ ++ + Q + + +Q + Q Q++
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQS 347
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
E+ Q +Q +Q + Q+Q Q Q Q Q QQ + + L +Q QQ Q
Sbjct: 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLA 835
Query: 148 QQQQQ----QQQPPQQPQQQQPQQQQQR 171
QQ ++ Q + QQ +Q +QQQ+
Sbjct: 836 QQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 14/93 (15%), Positives = 62/93 (66%), Gaps = 4/93 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A +++Q ++Q++Q++Q++++Q + Q + ++++ +++ +++ + A++Q
Sbjct: 23 EATRLLAEKRRQAREQREQEEQERREQEE----QDRLEREELKRRAAEERLRREEEARRQ 78
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + ++++ +++ ++ Q+Q+ Q++ Q++
Sbjct: 79 EEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
++ Q E+ ++ +QQ+ QQ+QQ+ Q +Q Q QQ+ QQ+QQ +Q I
Sbjct: 65 LQKQAATLSEEARKAKQQELQQKQQELQQKQ---QAAQQELQQKQQELLQPIY 114
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K Q+ Q +QQ + + + +QQ + Q +Q Q++Q+L Q+ A +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 145 QHQQQQQQQQQ 155
+ + ++ +
Sbjct: 712 FRELRTERLAK 722
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQQQQQQQ 123
++ + + + Q AR +Q Q Q + +Q++Q + Q Q+Q Q
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ-----QPQQQQPQQQQQRRD 173
QL+ Q + L+ + Q +Q Q + Q + QQ Q Q+RD
Sbjct: 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ---QQQQQQQQQQQLQMQQILLQRH 135
+ +L AR+ + QQ+ + +Q Q Q Q++Q + Q Q LQ Q LQ
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180
Query: 136 AQQ-----------QQQHQQQHQQQQQQQQQPPQQPQQ-QQPQQQQQRRDGA 175
A Q Q +Q+ Q + + ++ + Q+ A
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232
|
Length = 499 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQ--QQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ R + E+AA +E L+ + + +Q + Q + Q ++ + + QQ
Sbjct: 26 RLGRLEQMLGELAAV-LEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQ 84
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q + Q LL + Q + Q+ + + + + QQ ++
Sbjct: 85 QLLQSREQLQLLI---ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137
|
Length = 448 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q Q + QQ+ QL QQ Q++ + Q Q Q + Q
Sbjct: 128 VTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQ 187
Query: 152 QQQQPPQQPQQQQPQQQQQR 171
Q + + ++
Sbjct: 188 QTDGAGDDESEALVRLREAD 207
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A +L + + + ++ Q + +Q + + Q L
Sbjct: 111 EAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAAQALLRAAEALVEAAQAALAS 170
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
++ L+ + + + Q Q D A L
Sbjct: 171 AKLNLEY----TRITAPISGVIGARLVRVGQLVSAGQALATIADLDPAAALW 218
|
Length = 372 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+K + Q +QQQQQ QQQ Q Q QQ Q Q
Sbjct: 42 VKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQ 82
|
Length = 84 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQ---------PPHQQQQQQ----------------QQQQQ 123
QQQQQ QQQQQQQ Q Q PP + QQ
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
Q + + + Q Q+ QQQQQQQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 11/64 (17%), Positives = 41/64 (64%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
Q+ + Q+ ++++ Q +Q+++++ ++ Q ++++ L++R + +Q ++ ++ ++Q
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 153 QQQP 156
+Q P
Sbjct: 108 EQIP 111
|
This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 122 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 10/97 (10%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ + E+ + ++ + +++ ++ ++ Q +++ ++ +Q+ + L R +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q +++ Q ++ + + + ++ ++R + A
Sbjct: 742 VEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQ 145
Q +Q QQ + QQ +P + +QQ Q M QI L R + Q Q
Sbjct: 534 AAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLL 593
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q QQ QP Q Q Q
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQS 618
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQ----------QQQ 120
A+ R Q+ Q+QQ Q Q S Q + Q +Q
Sbjct: 213 AALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQLVGPEAAQRLEQL 272
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ+ QQ AQ+ Q Q +Q Q Q +QQ+ Q+ R
Sbjct: 273 DQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQ-IAQLRQQRFSPQEALR 323
|
Length = 336 |
| >gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 113 QQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q QQ+QQ L +Q L++ + QQ Q + QQ QQQ
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126
|
A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 12/71 (16%), Positives = 38/71 (53%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+K ++ +Q++ +Q ++++ + Q QQ ++ ++Q Q +Q+ Q +Q Q+++
Sbjct: 92 LKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEA 151
Query: 144 QQHQQQQQQQQ 154
+ + + +
Sbjct: 152 AKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 10/86 (11%), Positives = 45/86 (52%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+A EQ +Q++ +Q+ ++ + + +Q +++Q+Q ++ + +Q + + + ++
Sbjct: 84 RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
++ ++Q ++ + + +++
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAA 169
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 90 QQQQQQQQ----------QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQ 137
QQQQQQ QQ+ ++QQ+ Q +++ Q Q L + Q L+ H +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
+ Q+ +QQ ++ + Q + + R A
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAK 336
|
Length = 1047 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
K + L +++Q ++ H ++ QQ QQ
Sbjct: 183 LMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH 242
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q + ++Q + QQ +Q + + ++ + Q+ ++ Q+R +
Sbjct: 243 AYLTQ--KREAQEEQLKKQQLLKQLRARIEE--LRAQEAVLEETQERIN 287
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+K + + Q Q Q + Q +L Q + A++
Sbjct: 86 DRVKKGQLLARLDPSAVLQAALDQAEAQ---LARAQALLAPAELGDLQREAKLAAEKAAV 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q + Q + + Q +
Sbjct: 143 SQAELDAAQALLRAAEALVEAAQAALASAK 172
|
Length = 372 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
++ K+ ++ + Q +QQQQQ Q Q P+Q + Q QQ Q QQ+
Sbjct: 36 RIFKSEVKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQV 84
|
Length = 84 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 24/99 (24%), Positives = 39/99 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQ Q +QQ + ++QQQ + + ++ Q + + Q Q
Sbjct: 607 QPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDETFKLDQDQRRDRMRGQDGEQNFGDD 666
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLG 187
QQ QP QP ++ Q+ + L + GL G
Sbjct: 667 MPQQDGQPNGQPNLHDRLRKLQQEEAKRGLGQSQGGLKG 705
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 13/82 (15%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 80 ETQLIKAREQQQQQQQQ-QQQQQQQQQQSQQPPHQQQQ-----QQQQQQQQLQMQQILLQ 133
+ +L KA+ + ++ + Q QQ + +++ QQ + + Q+ ++ +Q
Sbjct: 19 KLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQ 78
Query: 134 RHAQQQQQHQQQHQQQQQQQQQ 155
+ Q+ QQ+ + ++++ +
Sbjct: 79 QQQQELALLQQEVEAKRERLLE 100
|
Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems. Length = 141 |
| >gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 96 QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM---QQILLQRHAQQQQQHQQQHQQQQQQ 152
Q QQQQ + PH Q QQ + + ++ Q Q QH Q
Sbjct: 55 PQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTY 114
Query: 153 QQQP-PQQPQQQQPQQQQQ 170
Q P PQQP QP Q Q
Sbjct: 115 GQNPQPQQPTHTQPPVQPQ 133
|
Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta. Length = 174 |
| >gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
++T+ +A QQQ + +++ Q+ + + Q Q Q+ LQ + L+ ++
Sbjct: 111 LQTRPERA---QQQLSEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAALKAQIEE 167
Query: 139 QQQHQQQHQQQQQ--QQQQPPQQPQQQQPQQQQQ 170
+ + +Q+ + Q+ + + ++ + + Q
Sbjct: 168 LELELLSNNNRQELLRLQRDLLKKRIERLEAELQ 201
|
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239 |
| >gnl|CDD|225615 COG3073, RseA, Negative regulator of sigma E activity [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPH------QQQQQQQQQQQQLQM 127
A + Q + Q+ + Q P Q Q Q+Q +
Sbjct: 115 SLAVIVGVQPYNGKSAASQEPETPVLQTLPLNGKAAPVSLAAPSEATQAPDQLNQEQRRR 174
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+LQ + Q++ H +Q Q Q QQ + +
Sbjct: 175 INAMLQDYELQRRLHSEQLASTQSQSQQAAVEVPGIESL 213
|
Length = 213 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
E+ S+ A +A++ +++ ++Q + QQ++ +Q+ + +Q+ Q
Sbjct: 205 ERESQEDAK-------RAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEA 257
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ L + + +Q + Q+++ + Q ++ ++ + +D
Sbjct: 258 KNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHK 304
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|217451 pfam03249, TSA, Type specific antigen | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
A+ I+ + ++ QQQ Q QQQQ Q Q++ + +Q QL + LQRH
Sbjct: 297 ANQIQLNFVIPQQAQQQGQGQQQQAQATAQEAAAAAAVRLLNGNEQIIQLYKDLVKLQRH 356
Query: 136 AQQQQQHQQ-QHQQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
A ++ ++ QQ++ Q +++Q ++ + G
Sbjct: 357 AGIKKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGG 396
|
There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation. TSA proteins are probably integral membrane proteins. Length = 502 |
| >gnl|CDD|226204 COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 16/77 (20%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 72 SEVAASYIET-QLIKAREQQQQQ----QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
SE + E + ++A E+ ++ +Q Q+Q Q++Q+ +P +++ + Q+ +Q++Q
Sbjct: 19 SEEYQALKEAKRAVEADEEAKKLFEEFRQLQEQFQEKQRFGYEPDYEEVTKAQELKQEIQ 78
Query: 127 MQQILLQ-RHAQQQQQH 142
+ + + A+Q
Sbjct: 79 LNEKVSAFMEAEQALSS 95
|
Length = 118 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 847 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.89 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.88 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.85 | |
| PTZ00421 | 493 | coronin; Provisional | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.85 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.84 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.84 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.84 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.84 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.84 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.83 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| PTZ00420 | 568 | coronin; Provisional | 99.82 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.82 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.81 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.81 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.8 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.78 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.76 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.75 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.75 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.74 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.71 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.71 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.7 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.69 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.68 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.67 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.67 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.66 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.66 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.65 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.64 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.63 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.63 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.62 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.59 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.59 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.59 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.58 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.56 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.55 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.54 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.53 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.53 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.52 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.47 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.44 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.4 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.38 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.38 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.37 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.36 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.36 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.35 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.35 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.33 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.32 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.31 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.29 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.28 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.28 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.27 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.27 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.24 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.16 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.13 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.12 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.1 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.1 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.09 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.05 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.05 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.04 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.02 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.01 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.0 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.99 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.97 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.94 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.92 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.91 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.91 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.91 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.87 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.86 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.85 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.83 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.82 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.78 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.72 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.68 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.63 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.62 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.61 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.58 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.56 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.55 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.54 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.53 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.42 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.39 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.37 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.35 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.34 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.32 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.31 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.3 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.27 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.27 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.24 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.21 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.21 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.2 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.17 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.15 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.11 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.11 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.1 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.09 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.09 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.09 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.08 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.05 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.03 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.01 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.96 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.9 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.89 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.86 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.86 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.83 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.81 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.77 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.76 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.74 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.68 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.66 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.62 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.61 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.5 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.42 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.31 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.24 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.23 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.21 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.18 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.16 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.04 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.0 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.0 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.97 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.94 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.89 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.89 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.75 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.75 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.73 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.63 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.57 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.55 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.54 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.54 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.39 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.35 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.34 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.29 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.28 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.27 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.24 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.19 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.15 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.1 | |
| PRK10115 | 686 | protease 2; Provisional | 96.1 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.06 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.04 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.84 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.74 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.73 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.72 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.69 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.69 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.59 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.54 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.5 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.45 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.39 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.22 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.18 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.95 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.91 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.81 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.78 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.68 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.64 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.37 | |
| PRK10115 | 686 | protease 2; Provisional | 94.37 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.25 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.2 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.17 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.0 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.99 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.93 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.7 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.67 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.22 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.95 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.87 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.85 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.74 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 92.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.48 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.46 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.42 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.42 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.14 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 91.89 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 91.85 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.79 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.75 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.56 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.53 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.18 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 90.94 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.71 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.62 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.47 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.26 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.01 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.96 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 89.72 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.69 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.57 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.45 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.11 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.99 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.96 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.81 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 88.41 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.4 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.14 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.83 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 87.81 | |
| PLN02153 | 341 | epithiospecifier protein | 87.21 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 87.13 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.08 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.01 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 86.53 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 86.46 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.19 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.84 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 85.49 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.3 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 85.14 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 84.81 | |
| PLN02153 | 341 | epithiospecifier protein | 84.75 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 84.6 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 84.55 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 84.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.07 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.05 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 84.02 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 83.68 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 83.63 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 83.55 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 82.7 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.44 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 82.36 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 82.35 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 80.52 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 80.42 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 80.11 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=272.17 Aligned_cols=273 Identities=18% Similarity=0.251 Sum_probs=213.9
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecC----------CCCCCCCcEEE
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----------DTDPRDAGGRG 619 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d----------~t~~~d~~v~v 619 (847)
..-+.+++|+|||+.++++.. ++|||.++++.... -+ ..+.+-|....... .+++.|+.++|
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~---~l--~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR---AL--RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc---cc--cCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 334456777777777766543 37777776654322 11 01122222111110 15667999999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc----------
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---------- 689 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs---------- 689 (847)
||+..+ .++.++.+|+..|+|++|--+ .+|++|+.|++|++|+...|++.+++++|...|+.|+.+
T Consensus 232 Wd~~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 232 WDTKLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEccCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 999876 788999999999999999754 499999999999999999999999999999999999887
Q ss_pred -CC-------------------------CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 690 -PS-------------------------MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 690 -p~-------------------------~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
|. ++.|++|++|+++.+|+-....+++....+|...|+.+.|+||++ ++++++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaS 386 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASAS 386 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEee
Confidence 22 345999999999999998876778889999999999999999987 677999
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC 822 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 822 (847)
.|..|++||.++|+.+.+|++|-..|+-+++..+. .+.+++.|.++++|+..... ......-+.+.+....|+
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDws--- 460 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWS--- 460 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEec---
Confidence 99999999999999999999999999999887665 56688899999999965322 222222245566666666
Q ss_pred ccCCCcEEEEEeCCCeEEEEE
Q 003106 823 RSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 823 ~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+ ++..+++|+.|..+++|.
T Consensus 461 -p-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 -P-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -C-CCceeecCCCceEEEeec
Confidence 3 788899999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=278.20 Aligned_cols=278 Identities=18% Similarity=0.196 Sum_probs=227.3
Q ss_pred cCCCCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEeeecC--C----CCCCCCcEE
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD--D----TDPRDAGGR 618 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d--~----t~~~d~~v~ 618 (847)
+......++..+.|+.|+..+++++ ..++|.+.++.....+.... .....+.+.+. + +++.||+++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----SRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----cceeeEEEccCCCccceeeeccCCcee
Confidence 3445566778889999999999865 55999999886554433211 11122222222 2 789999999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
+|++... .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++..+...++|...|.+|+|.+||.+++||
T Consensus 245 lw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 245 LWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999875 7888999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec--C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM--N 776 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~--~ 776 (847)
+.|..-||||+++ +.++..+.+|...|.+|+|+|+|- .|+||+.|++++|||++..+++.++..|...|..+.+. .
T Consensus 322 GlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 322 GLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred Cccchhheeeccc-CcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999 899999999999999999999974 77899999999999999999999999999999988877 4
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..+.+++.|+.+++|....... +..-.|+ ..++.+++..+ ++.+|+|++.|.+|++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~-~ksLaGH------e~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSP-LKSLAGH------EGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCccc-chhhcCC------ccceEEEEecc-CCceEEEeccCceeeecc
Confidence 56788899999999998553221 1111111 12223333333 788999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=267.24 Aligned_cols=234 Identities=25% Similarity=0.313 Sum_probs=195.3
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-E
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-T 674 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~ 674 (847)
.+++-+++++ +++.|.++|+||+.+. .+..+.++|...|.|++|+|||+.||+|+.||+|++||.++++.+ +
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~ 194 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR 194 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc
Confidence 4455577766 8999999999999976 688899999999999999999999999999999999999987654 6
Q ss_pred EEccCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 675 NLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp-----~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.|.+|...|++++|.| ..++||+++.||+|+|||+.. +.++..+.+|...|+||+|--+ .++++++.|++|+
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIk 271 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIK 271 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEcCC--ceEEecCCCceEE
Confidence 7899999999999976 567999999999999999997 8899999999999999999744 5889999999999
Q ss_pred EEECCCCceEEEEeeCCceEEEEEec-------------C------------------------CCEEEEEcCCCcEEEE
Q 003106 750 YWSINNGSCTRVFKVESFCCWCVNAM-------------N------------------------RPCLWDKLDAGDIQIS 792 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~~v~~~~~~-------------~------------------------~~~l~~~~~~g~i~i~ 792 (847)
+|+...|.+.+.+++|..+|+.++.. . ...+.+++++..+.+|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 99999999999999999998877633 1 1248899999999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.......+....++ ...+. ++.+.| ++.+|++++.|.+|++|+-.+
T Consensus 352 ~p~~~kkpi~rmtgH--q~lVn----~V~fSP-d~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGH--QALVN----HVSFSP-DGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred cccccccchhhhhch--hhhee----eEEECC-CccEEEEeecccceeeeeCCC
Confidence 865443333333222 22222 333334 899999999999999998754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=266.90 Aligned_cols=236 Identities=23% Similarity=0.235 Sum_probs=202.3
Q ss_pred CceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce
Q 003106 599 DNVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKS 672 (847)
Q Consensus 599 ~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~ 672 (847)
....++++.|+ +++.+|.+++|..... ..+.+|++|+..|.++.|+|. +.-||||+.||+|++|++++..+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 33445566665 8999999999999865 788899999999999999995 67899999999999999999999
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
+..|++|...|..|+|+|+|++|+|+|.|.+-|+||+++ +..+....||...|.+|+|++||. +++||+.|..-||||
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWD 331 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheee
Confidence 999999999999999999999999999999999999999 666777789999999999999998 888999999999999
Q ss_pred CCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 753 INNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 753 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
+|+|+|+..|.+|...|..+.|+.. ..+.+++.|+.++|||.+........ ..+...++. +.+.+..+.+|+
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~----Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQ----VKYSPQEGYFLV 404 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhh----eEecccCCeEEE
Confidence 9999999999999999999998855 46778999999999997755442111 123333443 333455678999
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
|++.|++|+||...+
T Consensus 405 TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRT 419 (459)
T ss_pred EcccCcceeeecCCC
Confidence 999999999997654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=242.32 Aligned_cols=287 Identities=22% Similarity=0.286 Sum_probs=207.4
Q ss_pred CCCCcceEEEecCCCeEee-cCCC---eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEec
Q 003106 552 GTTSKPLMMFGTDGAGTLT-SPSN---QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~-~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~ 622 (847)
|...+..++..+.+..++. ++.+ -+|++..-+......-....| +...| .+..+.|+ +++.|+++|+||+
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccceEEEEEe
Confidence 3344566666666555444 3333 468886543222111111122 22222 12344555 7999999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEEEcCC--CCEEEEE
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPS--MPRLATS 698 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~--~~~Lasg 698 (847)
.++ +....|.+|...|.+++|++|.+.|++|+.|++|++|++. +.+..++..+ .+.|+||+|+|+ ..+|+++
T Consensus 93 ~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 93 ATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred cCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 988 6778899999999999999999999999999999999987 4555555433 789999999998 5689999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
+.|++|++||+++ .+....+.||.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+. +...|.++.|.+..
T Consensus 169 s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 169 SWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred cCCceEEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 9999999999998 777889999999999999999987 77899999999999999999977765 55667778777766
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCC--CCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGS--DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
...+...+..|+|||...............+. ......+.++++.. ++..|++|-.|+.|++|.++.|
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv~~~ 315 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQVAKS 315 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEeecC
Confidence 66666677779999965433222222111111 11111111222222 6788999999999999999865
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=264.21 Aligned_cols=273 Identities=16% Similarity=0.257 Sum_probs=224.4
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~ 624 (847)
...+..+.|.|+|+.++++... .||+.....+...+ -.+|..|+.. +++++ ++..+|+|++|+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn- 168 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN- 168 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh------hhhcccceeEEEccCCCEEEEcCCCceEEecccc-
Confidence 3456789999999999886544 78998665544321 1244445543 45555 78899999999984
Q ss_pred CceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+..+..+.+|. ..|+|++|+|....|++|++||+|+|||....+..+.+.+|...|.||+|+|....||+++.|..
T Consensus 169 ---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 169 ---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred ---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence 34666666665 89999999999999999999999999999988888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe--cCCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA--MNRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~ 781 (847)
|++||.++ +.|+.++.+|+..|..+.|++++. +|++++.|..++++|+++.+.+.++++|...++++.+ .....+.
T Consensus 246 VKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eEeecCCC-cchhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 99999999 899999999999999999999995 6679999999999999999999999999999999864 4567788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..+|.|..|....... ...... .....+|++.+++ -+.+|++|+.|.++++|.-
T Consensus 324 sgg~Dgsvvh~~v~~~~p--~~~i~~----AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEP--LGEIPP----AHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccCCCceEEEecccccc--ccCCCc----ccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 999999999998652111 111111 1234578888888 5889999999999999964
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=275.71 Aligned_cols=267 Identities=24% Similarity=0.327 Sum_probs=209.7
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...++..|++|++.++.+-.+ ++|.+...++...-+ . .+....++...|-.+...|-..+ ..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~----~--------~~l~~~d~~sad~~~~~~D~~~~---~~ 443 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD----A--------SDLSNIDTESADVDVDMLDDDSS---GT 443 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccc----h--------hhhccccccccchhhhhccccCC---ce
Confidence 345778899999977665444 889987543222100 0 01111122222333444444433 34
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
..++.+|.++|..+.|+||.++|++|+.|++||+|.+++..++..+++|..+|++|.|+|-|-+|||++.|++.++|..+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcE
Q 003106 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDI 789 (847)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i 789 (847)
. ..+++.|.||-+.|.|+.|||+.. ++++||.|.+||+||+.+|.+++.|.+|...|.++.+.. +..+.++.+++.|
T Consensus 524 ~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 H-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred c-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 8 788999999999999999999976 677999999999999999999999999999999999875 4567789999999
Q ss_pred EEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 790 QISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 790 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+||..... .+..+.. +...+.+ +.+. .++.+||+|+.|.+|++||+.
T Consensus 602 ~iWDl~~~~--~v~~l~~-Ht~ti~S----lsFS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 602 KIWDLANGS--LVKQLKG-HTGTIYS----LSFS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEcCCCc--chhhhhc-ccCceeE----EEEe-cCCCEEEecCCCCeEEEEEch
Confidence 999966322 2222211 1333333 3332 378999999999999999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=236.24 Aligned_cols=276 Identities=18% Similarity=0.251 Sum_probs=216.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
|...+..+.|++|.+.+++++-+ -|||..+......+..- ..=...+.+++.+ .++.|....||++.+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 33456789999999999998766 67999877654432210 0011233455554 677788888898875
Q ss_pred Cc---eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeC
Q 003106 625 GF---SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSF 700 (847)
Q Consensus 625 ~~---~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~ 700 (847)
.. ..+..+.+.+|++.+.||.|-. ...|+|++.|.++.+||+++++.+..|.+|.+.|.+|+++| +++.|++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 41 3456677899999999999986 56899999999999999999999999999999999999999 8999999999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEecC-C
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMN-R 777 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~-~ 777 (847)
|++.+|||+|. +.++.+|.+|.+.|++|+|.|+|. -|++|+.|+++|+||+|....+..|.... ..|.+++|.. .
T Consensus 208 D~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 208 DKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccceeeeeccC-cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 99999999998 799999999999999999999987 46699999999999999999888887553 3467777764 4
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
..++++..+..+.+||...... ..... -+...++.. . ...++..|++|+.|.+||||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~--vg~L~-GHeNRvScl----~-~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGER--VGVLA-GHENRVSCL----G-VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccce--EEEee-ccCCeeEEE----E-ECCCCcEEEecchhHheeecC
Confidence 5667889999999999653322 11111 112222221 1 234788999999999999993
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=245.67 Aligned_cols=280 Identities=22% Similarity=0.262 Sum_probs=225.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|..-+.++++.|-..++++++.+ +|||+.++.+...+...++. |+ +.++.-. +++.|+.|++||++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~------vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET------VRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe------eeeeeecccCceEEEecCCCeeEEEech
Confidence 33456788999999999998877 89999999887665432221 11 1111111 67899999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. +.++.+.+|-..|.|++.+|.-+.|+||+.|.++||||+++...+.++.+|...|..|.+.|....+++|+.|++
T Consensus 224 ~n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 224 YN---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hh---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 77 688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
||+||++. ++...++..|...|.+++.+|.. ++|++++.| .|+-|++..|..+..+.+|...+.++....+.+++++
T Consensus 301 vrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSG 377 (460)
T ss_pred EEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEc
Confidence 99999998 78888999999999999999994 478788876 7999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.++|.+..||......--+.... -.++-.....++...+. ..+..|++|..|.+|++|+.
T Consensus 378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD-ktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD-KTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred CCceEEEEEecCcCcccccccccccCCccccccceeEEeec-ccCceEEeccCCcceEEEec
Confidence 99999999995543321111111 11222222222221111 24678999999999999985
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=265.88 Aligned_cols=280 Identities=23% Similarity=0.380 Sum_probs=217.5
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+.|++||+.+++...+ ++|+...... .....+ .+.......+-+++++ +++.|+++++||+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~- 234 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD- 234 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccC-
Confidence 4566778999999998776555 7899966652 111111 2222233334455565 789999999999933
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
..+.+.++++|...|+||+|+|+|++|++|+.|++|+|||+++++++..+.+|.+.|++++|++++.+|++++.|+.|+
T Consensus 235 -~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 235 -DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred -CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 3378889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCc--eEEEeccCCCC--eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE----ecCC
Q 003106 706 VWDADNPGY--SLRTFMGHSAS--VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN----AMNR 777 (847)
Q Consensus 706 iWD~~~~~~--~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~----~~~~ 777 (847)
|||+.+ +. ++.++.++... |+++.|+|++.+++ ++..|++|++||++.+.++..+.++...++|+. ....
T Consensus 314 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 314 VWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEECCC-CceeeeecccCCCCCCceeEEEECCCCcEEE-EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 999998 55 56777777665 99999999998655 888899999999999999999998877544442 3366
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe--CCCeEEEEEccC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC--GDSSLSSFIAGT 846 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs--~DG~V~vW~~gt 846 (847)
..++++..++.|.+|+.... ........+....+.. +.+++ ...++++++ .|+.|++|+...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~--~~~~~l~~h~~~~~~~----~~~~~-~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSG--GILQRLEGHSKAAVSD----LSSHP-TENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred CeEEEEeCCceEEEEeCCcc--chhhhhcCCCCCceec----cccCC-CcCeeeecCcCCCceEEEecCCC
Confidence 78899999999999997642 2222222211222222 22333 577888887 899999998753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=227.44 Aligned_cols=278 Identities=18% Similarity=0.270 Sum_probs=217.1
Q ss_pred CcceEEEecC-CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccCC
Q 003106 555 SKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
....++|.|- |..+++.+.+ +||+...+..... ...+ ++.+.+.|+.. +++.+ +++.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-k~vl-d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-KTVL-DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE-EEec-cccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 5788999998 8878887766 8999986332221 1122 22455555543 44444 7889999999998877
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.|+++.++++|...|.|++|+++|++||||+.|+.|-||.++. .+++..+..|...|.-|.|+|...+|+++++|.
T Consensus 94 -efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 94 -EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred -ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 8999999999999999999999999999999999999999873 467888999999999999999999999999999
Q ss_pred cEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 703 TVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 703 ~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
+|++|+-.. .-.++.++.+|...|.+++|++.|.++ ++|+.|++|+||-..+.- -..++..++.+... ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl-~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL-VSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE-EEecCCcceEeeeeccCc----chhcccceEeeeec-ccce
Confidence 999998763 235788999999999999999999755 599999999999866321 12355667777766 6788
Q ss_pred EEEcCCCcEEEEcCCcc-cce---eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFI-NAN---IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~-~~~---~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++..++.|++|..... ... ++......+..++....|+ +...++|++|+.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~----p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN----PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc----CCCCCceeecCCCceEEEEEec
Confidence 89999999999874421 111 2222223355577777777 3346889999999999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=254.04 Aligned_cols=237 Identities=26% Similarity=0.337 Sum_probs=192.9
Q ss_pred EEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEE
Q 003106 602 ESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNL 676 (847)
Q Consensus 602 ~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l 676 (847)
++-+++++ .+..++.+++|++.+... .....+.+|...|++++|+||+++|++|+.|++|+|||+ ..+..++++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 34566666 677899999999966532 356667899999999999999999999999999999999 566899999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++|...|++++|+|++++|++|+.|++|||||+++ +.++..+.+|.+.|++++|++++. +|++++.|+.|+|||+.++
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETG 320 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCC
Confidence 99999999999999999999999999999999999 899999999999999999999988 5558899999999999999
Q ss_pred c--eEEEEeeCCce--EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 757 S--CTRVFKVESFC--CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 757 ~--~~~~~~~~~~~--v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
. ++..+..+... +.++.+. +...++.+..++.+.+|+........... ++... + ...++ .+....+.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~--~-~~~~~-~~~~~~~~~i~ 395 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNL--V-RCIFS-PTLSTGGKLIY 395 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCc--c-eeEec-ccccCCCCeEE
Confidence 9 66777766554 7777774 56788999999999999966433222211 11111 1 11112 22244788999
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
+|+.|+.|++|+..+
T Consensus 396 sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSS 410 (456)
T ss_pred EEeCCceEEEEeCCc
Confidence 999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=234.13 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=190.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|++++|||+.++ ....++.+|...|..++|++--.||++++.|+.|+.||++..+.++.+.+|-+.|.|++.+
T Consensus 168 tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh 244 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH 244 (460)
T ss_pred ecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc
Confidence 7889999999999988 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|.-+.|++|+.|.++||||+++ ...+.++.||...|.+|.+.|....+ ++|+.|++|++||++.|+...++..|...+
T Consensus 245 PTldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 245 PTLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred ccceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccCceeEeeeccccee
Confidence 9999999999999999999999 78899999999999999999987755 499999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++........++......|+-|+... ..+...+.. +...+. .+... .+.++++|+..|.|.+||..
T Consensus 323 ral~lhP~e~~fASas~dnik~w~~p~--g~f~~nlsg-h~~iin----tl~~n--sD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDNIKQWKLPE--GEFLQNLSG-HNAIIN----TLSVN--SDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eEEecCCchhhhhccCCccceeccCCc--cchhhcccc-ccceee----eeeec--cCceEEEcCCceEEEEEecC
Confidence 999988888888777777888887432 111111111 111111 11111 47899999999999999974
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=222.55 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v 686 (847)
+++.|..||+|+...+.++.+...+ .+|+..|+.++|+|.|++||+||+|.++.||.-. ..+++.++++|...|.||
T Consensus 32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV 111 (312)
T ss_pred eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence 6788999999999866577777666 4899999999999999999999999999999865 468899999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC---CCceEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGSCTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~---~~~~~~~ 761 (847)
+|+++|++||+|+.|+.|-||.+.. ...++..+.+|...|..+.|||... ||++|+.|++|++|+-. ...|+.+
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 9999999999999999999999983 3467888999999999999999855 88899999999999876 3469999
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+.++...|+++.|++ +.++.++++++.+.||... +.....++..++...|. ...|++|++|+.|+
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-------~~~~~~~sr~~Y~v~W~-------~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-------TDLSGMHSRALYDVPWD-------NGVIASGGGDDAIR 256 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeec-------cCcchhcccceEeeeec-------ccceEeccCCCEEE
Confidence 999999999999987 4589999999999999743 22222333444444454 56799999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+|..
T Consensus 257 lf~~ 260 (312)
T KOG0645|consen 257 LFKE 260 (312)
T ss_pred EEEe
Confidence 9975
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=223.88 Aligned_cols=225 Identities=17% Similarity=0.179 Sum_probs=183.9
Q ss_pred CCCCCCcEEEEeccCC--ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQG--FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~--~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++.+|.++.+|++... .....++.+++|...|..++.++||.+.++++.|+++++||+.+++..+.|.+|...|++|+
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 5788999999998764 22356888999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC--CCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|++|.+.|++|+.|++|++|++.. .+..+...+ .+.|.||+|+|+. +-+|++++.|++|++||+++.+....|-+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 999999999999999999999985 455555433 7899999999985 44778999999999999999999999999
Q ss_pred CCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|...+..+.+..+ ..+..+..+|.+.+||...... ...+ .+...+.+.++. + .++.++...+-.|+||+
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fs----p--nrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFS----P--NRYWLCAATATSIKIWD 260 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEec----C--CceeEeeccCCceEEEe
Confidence 9999998887654 4566788999999999764333 1111 122333333333 2 45666666777799999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
..+
T Consensus 261 l~~ 263 (315)
T KOG0279|consen 261 LES 263 (315)
T ss_pred ccc
Confidence 864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=221.31 Aligned_cols=234 Identities=19% Similarity=0.232 Sum_probs=193.6
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC---CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
-+-..+|+|.|.+++.++-+ .||++.+.+........-+...+.+.+.+. +..|. +++.|.+..+||++++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g-- 176 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG-- 176 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc--
Confidence 34567899999999998877 788887553222111111222344444433 33344 8999999999999988
Q ss_pred eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..+..|.+|.+.|.+|+++| +++.|++|+.|+..+|||++.+.++.+|.+|...|++|+|.|+|.-|++|++|+++|+
T Consensus 177 -~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 177 -QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRL 255 (343)
T ss_pred -eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEE
Confidence 67888999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 707 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
||+|. ...+..|.. ....|++|+|+..|+ ||++|..|.++.|||.-.++.+..+.+|...|.|+.... ...+.++
T Consensus 256 yDlRa-D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 256 YDLRA-DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred EeecC-CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 99998 666777752 345799999999987 555888899999999999999999999999999998764 4567788
Q ss_pred cCCCcEEEEc
Q 003106 784 LDAGDIQISD 793 (847)
Q Consensus 784 ~~~g~i~i~d 793 (847)
+-+..+++|.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 8888888883
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=241.56 Aligned_cols=271 Identities=17% Similarity=0.273 Sum_probs=217.0
Q ss_pred CcceEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCcee
Q 003106 555 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~ 628 (847)
.+-++.|.|-.-++++ .+...||+.++-..+..+.-. ......+.|..... +++.|..|||++..++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--- 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--- 87 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----ccchhhheeeeccceEEEecCCceEEEEecccc---
Confidence 4456677777777655 466799999988776654321 11112222333332 7888999999999966
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~i 706 (847)
+.+..|.+|.+.|+||+.+|.-.+++|+|+|-+|++||.+. ..+..+|++|+..|++|+|+|. .+.||++|.|++|+|
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 78999999999999999999999999999999999999984 5788899999999999999996 568999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEc
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 784 (847)
|.+.. ..+..++.+|...|+||+|-+.|+ -+|+||++|.+|+|||..+..|+.++.+|...|.++.+.+. ..+.+++
T Consensus 168 Wslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 168 WSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99998 678899999999999999987652 25669999999999999999999999999999999988765 5677999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
+||++++|+............ ...++|.+..+. ..+.+++|...|.|.|
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhc-------CCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 999999999654332222222 235688888776 4556888888887754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=240.27 Aligned_cols=223 Identities=22% Similarity=0.355 Sum_probs=187.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~f 688 (847)
+++..|.+.+|+.. .+.....+.+|...|+++.|+++|.++++|+.||.|++|+.. ...+..+.+|. ..|++++|
T Consensus 113 tgs~SGEFtLWNg~---~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGT---SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAF 188 (464)
T ss_pred eecccccEEEecCc---eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheecc
Confidence 67788899999974 445555678999999999999999999999999999999976 34444555554 88999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|+...|++|++||+|+|||... .+.-+.+.||.-.|.+++|||... +|++++.|..|++||.+++.|+.++.+|..+
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccce
Confidence 99999999999999999999997 555677799999999999999966 7889999999999999999999999999999
Q ss_pred EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|..+.+. +...+.+++.|..++++|.+. -..+++..+ +..++ +++.++++.+.+|.+|+.||.|.+|.++
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~--Hkkdv----~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRG--HKKDV----TSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhc--chhhh----eeeccccccccceeeccCCCceEEEecc
Confidence 9998875 457889999999999999773 223333322 23334 4455568899999999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=236.61 Aligned_cols=216 Identities=21% Similarity=0.326 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++.+|.+|++||..+ ..++..+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.++..|...|..+.|+
T Consensus 212 SGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred cccccCceEEecccc---HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 789999999999884 46788899999999999994 6799999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
..++++++.|.+|+|||+..+. .+.+.+.||...|+.|.|+.. ++++++.|.+|++|++.++++++++.+|..
T Consensus 287 --ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 --NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred --CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceeeehhhhcccc
Confidence 4589999999999999998743 234667899999999999854 778999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.|+.+ .+..+.+|+++..|++||....... ..-.+ +... +.|...++..|++|+.||+|+||++.+
T Consensus 362 GIAClQY-r~rlvVSGSSDntIRlwdi~~G~cL-RvLeG--HEeL-------vRciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 362 GIACLQY-RDRLVVSGSSDNTIRLWDIECGACL-RVLEG--HEEL-------VRCIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred cceehhc-cCeEEEecCCCceEEEEeccccHHH-HHHhc--hHHh-------hhheeecCceeeeccccceEEEEeccc
Confidence 9999875 4457789999999999996532111 01111 1111 334455688899999999999999753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=227.68 Aligned_cols=276 Identities=16% Similarity=0.200 Sum_probs=221.6
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+.|.|+-...+.++. .++||..++++...+..... ....+.+...+ +++.|-.+.+||..+.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-----sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD-----SVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc-----ceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 345567777887776666543 38999999998665543321 11222222222 6777888999999863
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+++.+.+|...|.+++|-|-|.+|++++.|.+|+.|+++++.++.+|.+|...|.-|+.+.||..+++|+.|.+|+
T Consensus 183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 183 --FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred --HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecC--------------CCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPN--------------KDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~--------------g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
+|-+.+ +.+...+.+|.-.|.+++|.|. +..++++++.|++|++||+.++.|+.++.+|..+|..
T Consensus 261 vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 261 VWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 999998 7788889999999999999763 2247789999999999999999999999999999999
Q ss_pred EEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 772 VNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 772 ~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+++.. +.+++++.+|+.+++||........... .+..++++..++ . ...++++|+-|-++++|.-
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---ah~hfvt~lDfh----~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---AHEHFVTSLDFH----K-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---CCcceeEEEecC----C-CCceEEeccccceeeeeec
Confidence 99874 5578899999999999966433222111 223334443333 2 3458999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=233.51 Aligned_cols=270 Identities=20% Similarity=0.307 Sum_probs=203.2
Q ss_pred CcceEEEecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCcee
Q 003106 555 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~ 628 (847)
.+..-++--|...++.+ +..+|||..+..+...+. ++.+.|.+.-..+. +++.|.+|++||+.++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~------GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT------GHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhh------cCCCcEEeeeccceEEEecCCCceEEEEeccCC---
Confidence 33444444444444443 344999999877665422 13333433322221 7889999999999988
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+++.++-+|...|..+.|+ ..+++|++.|.+|.|||+.... +.+.+.+|...|+.|.|+ .++|++++.|.+|+
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 6788888999999999997 4599999999999999998543 445678999999999997 55999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 785 (847)
+|++.+ .++++++.+|...|.|+.+. .+++++|+.|.+|++||+..|.|++.+.+|...|.|+.|++. .+.+|..
T Consensus 344 vW~~st-~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k-rIVSGaY 418 (499)
T KOG0281|consen 344 VWSTST-CEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVSGAY 418 (499)
T ss_pred EEeccc-eeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-eeeeccc
Confidence 999999 88999999999999888875 348889999999999999999999999999999999997654 6779999
Q ss_pred CCcEEEEcCCccccee-e-ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 786 AGDIQISDSLFINANI-F-CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 786 ~g~i~i~d~~~~~~~~-~-~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|.|++||........ . ...-.......+.+++.+ ..++..|++++.|.+|.||+.-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL---QFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL---QFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEE---eecceEEEeccCCCeEEEEEcC
Confidence 9999999944221110 0 000000111122233332 3356679999999999999963
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=262.25 Aligned_cols=282 Identities=17% Similarity=0.203 Sum_probs=208.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhc-c--ccccccCCCCCceEEeeecCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRAD-M--DRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~-~--~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd 621 (847)
+...+..++|++||.++++++.+ +|||+........ . ......+.......+|...++ +++.|++|++||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 56668899999999999887766 8999864211100 0 000001111111223333322 677899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc-CCCCEEEEEe
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSS 699 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs-p~~~~Lasgs 699 (847)
+.++ +.+..+.+|.+.|++|+|++ ++.+|++|+.|++|+|||+.++..+..+..+ ..|.++.|+ +++.+|++|+
T Consensus 562 ~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 562 VARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred CCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 9876 56778889999999999997 7899999999999999999999988888755 679999995 5689999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC------CceEEEEeeCCceEEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSCTRVFKVESFCCWCVN 773 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------~~~~~~~~~~~~~v~~~~ 773 (847)
.||+|++||+++....+..+.+|...|.++.|. ++. +|++++.|++|+|||++. +.++..+.+|...+.++.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999997554677888999999999997 445 566999999999999985 357788888888887777
Q ss_pred ec-CCCEEEEEcCCCcEEEEcCCcccceeeeccc----------ccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 774 AM-NRPCLWDKLDAGDIQISDSLFINANIFCGLG----------WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 774 ~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+. ....+.+++.++.+.+|+...........+. ..+...+....|+ + ++.+|++|+.||.|+||
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws----~-~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR----G-QSSTLVAANSTGNIKIL 790 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc----C-CCCeEEEecCCCcEEEE
Confidence 65 3567889999999999995432111110000 0011223333343 3 67889999999999999
Q ss_pred Ec
Q 003106 843 IA 844 (847)
Q Consensus 843 ~~ 844 (847)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 85
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=252.59 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=175.9
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 675 (847)
.+.+-++++. +++.|+++|+|.+.+ +.++..+++|..+|+++.|+|-|-+|||||.|++.++|..+..++++.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 3444455555 899999999999984 578888999999999999999999999999999999999999999999
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|.+|-+.|.|+.|+|+..++++||.|.+||+||+.+ +..++.|.||.+.|++|+|+|+|. +|++|+.||.|+|||+.+
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCC
Confidence 999999999999999999999999999999999998 889999999999999999999987 567999999999999999
Q ss_pred CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcc
Q 003106 756 GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~ 797 (847)
++.+..+.+|...+.++.|.. +..+.++..+..|++||....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999998874 456778888899999995543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=241.92 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=196.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++...|.|.||+.++. ..++.+.-..-+|+++.|-...++|++|++|..|+||+..+++.+..|+.|.+.|.||+.+
T Consensus 30 a~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavH 106 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH 106 (794)
T ss_pred EeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeec
Confidence 4567889999999976 6777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|...+++|+|+|-+|++||.+..-.+..+|.||...|++|+|.|.....|++|+.|++|+||.+....+..++.+|...|
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 99999999999999999999987788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC---EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNAMNRP---CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~~~~~---~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.|+.+.... ++.++.+|..+++||.....+... -.+ +...+....+ ++ .-.+|++|+.||+||||...|
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-LeG--Ht~Nvs~v~f----hp-~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-LEG--HTNNVSFVFF----HP-ELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-hhc--ccccceEEEe----cC-CCcEEEEecCCccEEEecCcc
Confidence 999987554 999999999999999654322111 111 1222222222 22 456899999999999999998
Q ss_pred C
Q 003106 847 Y 847 (847)
Q Consensus 847 y 847 (847)
|
T Consensus 259 y 259 (794)
T KOG0276|consen 259 Y 259 (794)
T ss_pred e
Confidence 7
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=226.81 Aligned_cols=233 Identities=23% Similarity=0.400 Sum_probs=197.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCC-chhhccccccccCCCCCceEE--eeecCC---CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDL-ELRADMDRLVEDGSLDDNVES--FLSHDD---TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~-~~~~~~~~~~~~g~~d~~v~~--~~s~d~---t~~~d~~v~vwd 621 (847)
.+......+.|...|+++++.+.+ ++||..+. +... .+. ..+..|.+ |+...+ ++++|.+|+.||
T Consensus 148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k---s~~---gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK---SLI---GHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH---Hhc---CcccceeeEEEEecCCeeeecccccceeEEe
Confidence 344457788999999999988776 78999764 2222 111 12222322 222222 899999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC----------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---------- 691 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~---------- 691 (847)
+.++ .++.++.+|...|..++.+-||.++|+|+.|.+|++|-+.++.+...+++|.-+|.|++|.|.
T Consensus 222 ~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 222 CDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred cccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 9988 688999999999999999999999999999999999999999999999999999999999871
Q ss_pred -----CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 692 -----MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 692 -----~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+.++++++.|++||+||+.+ +.++.++.+|...|..++|+|.|+++ ++|.+|++|+|||++++.|.+++..|.
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccceeeeccCCCc
Confidence 24889999999999999999 89999999999999999999999855 499999999999999999999999999
Q ss_pred ceEEEEEecC-CCEEEEEcCCCcEEEEcC
Q 003106 767 FCCWCVNAMN-RPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 767 ~~v~~~~~~~-~~~l~~~~~~g~i~i~d~ 794 (847)
..+.++++.. ..++.+|+-+..+++|+.
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999864 457888888988998874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=219.13 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=192.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++..||++++||+. ...+++..+++|+..|.+|.|++ ++..++++|.|++|++||......+.++.+|...|....|
T Consensus 78 ~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 78 AASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF 155 (311)
T ss_pred EEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence 67889999999943 35578999999999999999999 6677889999999999999999999999999999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCC
Q 003106 689 SPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVES 766 (847)
Q Consensus 689 sp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~ 766 (847)
+|. .+.|++++.|+++++||++.+++.+. +..|...|.|++|+.-..++|+||+.|+.||+||+++-+ .+.++.+|.
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 996 67899999999999999999777666 888999999999999999999999999999999999854 778889999
Q ss_pred ceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..|+.+.+.+ ...+.+.+.|-++++|+.......+ .....+..++....|++ .++..+++.+.|+.++||+-
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ETVDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhh--hhhhccceEEecccccc----ccCceeeecccccceeeecc
Confidence 9999998764 4567788888899999855322211 11223556666666764 36789999999999999985
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
+
T Consensus 309 ~ 309 (311)
T KOG0277|consen 309 G 309 (311)
T ss_pred c
Confidence 4
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=244.68 Aligned_cols=273 Identities=20% Similarity=0.218 Sum_probs=211.0
Q ss_pred ceEE-EecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEee-ecCC----CCCCCCcEEEEeccCC-c
Q 003106 557 PLMM-FGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFL-SHDD----TDPRDAGGRGMDVSQG-F 626 (847)
Q Consensus 557 ~~v~-~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~-s~d~----t~~~d~~v~vwd~~~~-~ 626 (847)
..++ ++|+..+++.+.. .|++++.+..+. +..| +++.|-... ...+ +++.|.++++|.+..+ .
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~G-H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------IIPG-HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE------EEeC-chhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 3444 4566676655432 288877766543 1112 222232222 1122 8899999999998554 2
Q ss_pred eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc-----ee----EEEccCCCCeEEEEEcCCCCEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK-----SK----TNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~-----~~----~~l~~h~~~I~~v~fsp~~~~La 696 (847)
..-++....+|++.|.+++++.. ..+|+++|.|++|++|++...+ .+ .+...|...|+||+++|+.+.||
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 34556677899999999999874 4689999999999999987511 11 12347999999999999999999
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-c
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-M 775 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~ 775 (847)
|||.|++.+||+++. ...+.++.||...|++|.|++... +++|||.|++|+||.+.++.|+++|.+|...|..+.| .
T Consensus 480 T~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ecccccceeeecccC-ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 999999999999996 888999999999999999999865 7889999999999999999999999999988876655 5
Q ss_pred CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 776 NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
++..+.++..+|.|++|+.....+ .. .-+....++|.+.+.+ ...+++||++||.|.+|+.-|
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC--~~-----tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNEC--EM-----TLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhh--hh-----hhhhccceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 677899999999999999653221 11 1234567889988877 566999999999999998754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=221.17 Aligned_cols=273 Identities=25% Similarity=0.404 Sum_probs=210.4
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..++|++++..+++++.+ .+||+.+......+.. ....+ .+.+.+++ +++.++.+++||+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG------HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec------CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 44567899999999988876643 7899987753332211 11222 23333333 56679999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..|...|++++|+|++.+|++++.|+.
T Consensus 82 ~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 82 TG---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cc---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 75 456667789999999999999999999988999999999999999999999999999999999888888888999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE-E
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW-D 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~ 782 (847)
|++||+++ +..+..+..|...|.+++|++++..++ +++.|+.|++||+++++.+..+..+...+.++.+.....++ .
T Consensus 159 i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 159 IKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred EEEEEccc-cccceeEecCccccceEEECCCcCEEE-EecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 99999997 677788888999999999999987555 66679999999999999998888888788888877654444 4
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..++.+.+|+...... ..... .+...+....|+ + ++.+|++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~--~~~~~-~~~~~i~~~~~~----~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGEC--VQTLS-GHTNSVTSLAWS----P-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCcee--EEEcc-ccCCcEEEEEEC----C-CCCEEEEecCCCeEEecC
Confidence 44599999999653221 11111 122233333333 3 468899999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=208.58 Aligned_cols=255 Identities=17% Similarity=0.258 Sum_probs=194.0
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
+|||...+|.+...+..- |..|- +-+.+|+ .++..-.||+||+.++ ...++.++.+|+..|+++.|..|
T Consensus 22 IRfWqa~tG~C~rTiqh~------dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~-np~Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHP------DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSN-NPNPVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred eeeeehhcCeEEEEEecC------ccceeeEEEcCCcchhhhccCCeeEEEEccCC-CCCceeEEeccCCceEEEEEeec
Confidence 399999999877654421 11121 2233443 5566778999999998 55589999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMS 728 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~s 728 (847)
|+.++|||+||+|||||++...+-+.| .|..+|++|..+|+-..|++|..+|.|+|||+.+ ..+...+ ......|.+
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHELIPEDDTSIQS 172 (311)
T ss_pred CeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccC-CccccccCCCCCcceee
Confidence 999999999999999999997776666 4779999999999999999999999999999998 4444433 445578999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCC------ceEEEEeeCCceE-EEEEecCCCEEEEEcCCCcEEEEcCCccccee
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNG------SCTRVFKVESFCC-WCVNAMNRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~------~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
+...|||..+ +.+...|...+|++-+. +++..|..|...+ .|+...+...+.+.+.+.+++||+.... ...
T Consensus 173 l~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kl 250 (311)
T KOG0315|consen 173 LTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKL 250 (311)
T ss_pred EEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eee
Confidence 9999999854 46777899999999764 3556677777655 4555556677888999999999986543 111
Q ss_pred eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 802 FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 802 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
... ..+. ..-.|+..+.. ++.+|++|+.|+.+++|++.
T Consensus 251 e~~--l~gh---~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 251 ELV--LTGH---QRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEE--eecC---CceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 111 1011 12356655444 78999999999999999975
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=227.61 Aligned_cols=280 Identities=16% Similarity=0.261 Sum_probs=216.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC----eEEeCCC----Cchhhcccccc----ccCCCCCceEEe-eecCC----CCCCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN----QLWDDKD----LELRADMDRLV----EDGSLDDNVESF-LSHDD----TDPRD 614 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~----~~~~~~~~~~~----~~g~~d~~v~~~-~s~d~----t~~~d 614 (847)
+...+...+|.|-...+++.+.. ++|++.. +.....+.... .+......|.+. +..++ ++..+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 55667888999977755554433 8998865 11111112111 222222334433 34444 78899
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----------------------- 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----------------------- 671 (847)
|.+|+|+.... .+.++..|+++|.+|.|+.+|++|++++.|+++.|||..++.
T Consensus 257 G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 257 GEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred cEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 99999998654 677888999999999999999999999999999999985432
Q ss_pred ------------------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec
Q 003106 672 ------------------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 733 (847)
Q Consensus 672 ------------------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp 733 (847)
++.++.+|.+.|.+|.|+|.+.+|+++++|++++||.... ..+...+.+|...|+.+.|+|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecC
Confidence 2344667999999999999999999999999999999987 778889999999999999999
Q ss_pred CCC--------eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeec
Q 003106 734 NKD--------DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCG 804 (847)
Q Consensus 734 ~g~--------~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 804 (847)
+|. ..+++++.|++|++||+..+.++++|..|...|+++++.+ ..++..+..+|.|.+|+.... .++..
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~--~l~~s 489 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG--KLVKS 489 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch--heeEe
Confidence 763 3677999999999999999999999999999999999875 557789999999999996532 22222
Q ss_pred ccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 805 LGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 805 ~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
. .+...+....|+ +++..|..+-.||.|+|-++.
T Consensus 490 ~--~~~~~Ifel~Wn-----~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 490 Y--QGTGGIFELCWN-----AAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred e--cCCCeEEEEEEc-----CCCCEEEEEecCCCceEEEec
Confidence 1 123334556666 467889999999999998875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=208.58 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=209.3
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceee
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~ 629 (847)
...+..+.|.-||.+.++.+.+ ++|+...+.+..++...... .+|..+..-.+.-.+++.|..+.+||+.+| +
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E-VlD~~~s~Dnskf~s~GgDk~v~vwDV~TG---k 92 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE-VLDAALSSDNSKFASCGGDKAVQVWDVNTG---K 92 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce-eeeccccccccccccCCCCceEEEEEcccC---e
Confidence 3467889999999999998877 89999998877764432110 011111111112227899999999999988 7
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
.++.+++|.+.|+.++|+.+...+++|+.|.+|++||.+ +.+++..+....+.|.+|... +..|++|+.||++|.|
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 889999999999999999999999999999999999998 467888898889999999987 5689999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce---EEEEEecCCCEEEEEc
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC---CWCVNAMNRPCLWDKL 784 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~---v~~~~~~~~~~l~~~~ 784 (847)
|++. +.....+.+| +|+|++|++++.+.| .++.|++|++.|-.+|+.+..+++|... +.|........++.++
T Consensus 171 diR~-G~l~sDy~g~--pit~vs~s~d~nc~L-a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 171 DIRK-GTLSSDYFGH--PITSVSFSKDGNCSL-ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred Eeec-ceeehhhcCC--cceeEEecCCCCEEE-EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence 9998 6655555554 799999999999777 6778999999999999999999998654 4455556777899999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
++|.+++||.... .....+.... ...+-++.|++....+ +++... .+.+|...
T Consensus 247 EDG~Vy~wdLvd~--~~~sk~~~~~----~v~v~dl~~hp~~~~f-~~A~~~-~~~~~~~~ 299 (307)
T KOG0316|consen 247 EDGKVYFWDLVDE--TQISKLSVVS----TVIVTDLSCHPTMDDF-ITATGH-GDLFWYQE 299 (307)
T ss_pred CCceEEEEEeccc--eeeeeeccCC----ceeEEeeecccCccce-eEecCC-ceeceeeh
Confidence 9999999996633 2333332211 1224456677754444 444333 35556543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=219.98 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=218.0
Q ss_pred cceEEEecCCCeEeecCCC---eEEeCCCCchhhcccccccc--CCCCCceEEe-eecCC----CCCCCCcEEEEeccCC
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVED--GSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~--g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..|||||.++++++.+ .+||..+++++.++.--..+ --+|..|.+. ++.|. +++.||.|++|.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 4567899999999998877 78999999998875422111 1134445444 55554 8999999999999988
Q ss_pred ceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 626 FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 626 ~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+++.|. +|+..|+|+.|+.|+..|++++.|.+|+|--+++|++++.|++|++.|+...|.++|.++++++.||+|
T Consensus 296 ---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 296 ---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred ---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 5666664 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCC
Q 003106 705 RVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRP 778 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~ 778 (847)
+||+.++ ..|+.+|+. ..-.|.+|..-|.....++.|...++|.|-++. |..++.|... ...|.|+....+.
T Consensus 373 kvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 373 KVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc
Confidence 9999998 788888864 456789999989888788899999999999987 6778887643 4567777777888
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++..+++.++.|........ .....+ ..++. .+..++ ..+.+++-+.||.+++|+
T Consensus 451 wiYcigED~vlYCF~~~sG~LE--~tl~Vh-EkdvI----Gl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLE--RTLPVH-EKDVI----GLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCcee--eeeecc-ccccc----ccccCc-ccchhhhhcccchhhhcC
Confidence 9999999999888874422211 111111 11111 122233 678899999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=223.19 Aligned_cols=279 Identities=19% Similarity=0.310 Sum_probs=208.0
Q ss_pred CCCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCC------ceEEeeecCCCCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDD------NVESFLSHDDTDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~------~v~~~~s~d~t~~~d~~v~vw 620 (847)
.+|....+...|||.|.+++.+. ..||||...-+..-....-+-.|.+++ ..++... ..+++..++++
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av---GEGrerfg~~F 132 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV---GEGRERFGHVF 132 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE---ecCccceeEEE
Confidence 35566778889999999887754 449999976433222111111222211 1111111 23333344433
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
-.++| ..+..+.+|...|++|+|-|... +++||++|++|.+|+=...+...++..|...|.||+|+|||++|++++
T Consensus 133 ~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 133 LWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 33333 45677899999999999999654 699999999999999888899999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc----eEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF----CCWCV 772 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~----~v~~~ 772 (847)
.||+|.|||-.+ ++.+..+. +|.+.|++|+|+||+..++ |++.|.+++|||+.+.++++++..... .+-|+
T Consensus 210 sDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 210 SDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred CCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 999999999998 78888887 8999999999999998665 999999999999999999999976543 45555
Q ss_pred EecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 773 NAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 773 ~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. ...+.+.+.+|.|.+++..... ......++ ...+++... ..++.+|++|+.||.|.-|+.++
T Consensus 288 Wq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GH--nK~ITaLtv-----~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 288 WQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGH--NKSITALTV-----SPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred Ee--CCeEEEEEcCcEEEEecccCCC-hhheeccc--ccceeEEEE-----cCCCCEEEeeccCceEEEEecCC
Confidence 54 6677888999999999866544 33333333 233333211 23568999999999999999875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=237.16 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=168.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~ 680 (847)
.++.++.+++|++... ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|.
T Consensus 49 gGG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 4667889999998754 467788999999999999996 7899999999999999997532 345678999
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 681 SLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 681 ~~I~~v~fsp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..|.+|+|+|++.. |++++.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEE
Confidence 99999999999875 57899999999999998 55566664 567899999999988 5668888999999999999999
Q ss_pred EEEeeCCceEEE--EE---e-cCCCEEEEEcCC----CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 760 RVFKVESFCCWC--VN---A-MNRPCLWDKLDA----GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 760 ~~~~~~~~~v~~--~~---~-~~~~~l~~~~~~----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
..+.+|...+.+ +. + .+...++++..+ +.|.+||.......+... ............|+ +..+.+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D----~~tg~l 277 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYD----ESTGLI 277 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeee----CCCCCE
Confidence 999888754322 21 2 234456655544 369999976433222111 11111111112233 345778
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
+++|++|++|++|++.
T Consensus 278 ~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEEEECCCeEEEEEcc
Confidence 9999999999999973
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=240.99 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=197.0
Q ss_pred CCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhh-cccc-------ccccCCCCC------ceEEeeecCCCC
Q 003106 549 PHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRA-DMDR-------LVEDGSLDD------NVESFLSHDDTD 611 (847)
Q Consensus 549 ~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~-~~~~-------~~~~g~~d~------~v~~~~s~d~t~ 611 (847)
...+...++++.||+||+++++++.+ +||.+...+... .+.. +.+.+.++. ...........+
T Consensus 263 ~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 263 SNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 33677889999999999999999877 899997744311 0000 000010100 000000000112
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP- 690 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp- 690 (847)
.....+.+-+..-.+..+++..++||.+.|.+|.|+.+ .+|++++.|++||||++...+++++| .|.+.||||+|+|
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEeccc
Confidence 22222333333333456788899999999999999964 69999999999999999999999988 5999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-----
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----- 765 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----- 765 (847)
|.++|++|+.||.||||+|.. ...+... .-...|++++|.|+|+.. +.|+.+|.+++|+++..+.+..+..+
T Consensus 421 DDryFiSGSLD~KvRiWsI~d-~~Vv~W~-Dl~~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISD-KKVVDWN-DLRDLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCc-CeeEeeh-hhhhhheeEEeccCCceE-EEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 567999999999999999987 4444444 444889999999999854 59999999999999987766554422
Q ss_pred ---CceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 766 ---SFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 766 ---~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
...|+.+.+.. ...|+..+.|..|+|+|..... +++.+. ......-....+ ..++.+|++|+.|..|
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asf-----s~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASF-----SSDGKHIVSASEDSWV 570 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeE-----ccCCCEEEEeecCceE
Confidence 22567666553 3368899999999999975322 222222 211111111112 2278999999999999
Q ss_pred EEEEc
Q 003106 840 SSFIA 844 (847)
Q Consensus 840 ~vW~~ 844 (847)
+||+.
T Consensus 571 YiW~~ 575 (712)
T KOG0283|consen 571 YIWKN 575 (712)
T ss_pred EEEeC
Confidence 99996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=211.92 Aligned_cols=274 Identities=20% Similarity=0.244 Sum_probs=210.9
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
+...+..+.|.|||..+++++.+ -||++...+...- +-.|.......+-+..|+ +++.|.+++.||+++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEecccccccee----eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 34567889999999999999988 4799764332111 111212222233344444 789999999999998
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
| +.+..+++|.+-|++|+-+.-| .+|.+|+.||+++|||+++...+.++. ....++++.|.-++..+++|+-|+.
T Consensus 122 G---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 122 G---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred c---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 8 7888999999999999955544 467788999999999999988888774 4567999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----CceEEEEeeCC-----ceEEEEEe
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKVES-----FCCWCVNA 774 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~----~~~~~~~~~~~-----~~v~~~~~ 774 (847)
|++||++. ...+.++.||.+.|+.|..+++|..++ +-+-|.+|++||++- .+|+..|.++. ....|-..
T Consensus 198 ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 198 IKVWDLRK-NDGLYTLSGHADTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred eeeecccc-CcceEEeecccCceeeEEeccCCCccc-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999998 788999999999999999999999665 999999999999985 35788887653 34455556
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+...+-+++.++.+++||.......++.+ ++++ .+-.+.+++ .+.+|.+++.|.+|++=+
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklp-Gh~g------svn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLP-GHYG------SVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcC-Ccce------eEEEeeecC-CCcEEEEeccCceeEeec
Confidence 677788899999999999976544333322 2221 122233344 688999999999998744
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=235.28 Aligned_cols=207 Identities=19% Similarity=0.300 Sum_probs=157.8
Q ss_pred EEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 003106 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 702 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg 702 (847)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++ ..+..+.+|...|.+|+|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999999754 3567889999999999999985 6899999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE--EEEEecCCCEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC--WCVNAMNRPCL 780 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v--~~~~~~~~~~l 780 (847)
+|+|||+++ +..+..+.+|...|.+|+|+|++. +|++++.|++|+|||+++++.+..+..|.... .++.......+
T Consensus 149 tVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999998 677888999999999999999987 66799999999999999999998888876532 23333333444
Q ss_pred EEE----cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe-CCCeEEEEEccC
Q 003106 781 WDK----LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~----~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~gt 846 (847)
+++ ..++.|.+||.......+... ............|+ + ++.+|++|+ +||.|++|++..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~d~~~~~~~~~~d----~-d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTV-DLDQSSALFIPFFD----E-DTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEe-ccCCCCceEEEEEc----C-CCCEEEEEEeCCCeEEEEEeeC
Confidence 433 246889999976433222111 11011111111222 2 566777776 699999999853
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=206.78 Aligned_cols=226 Identities=22% Similarity=0.277 Sum_probs=179.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~ 687 (847)
+++.|.+||+|...+| ++.+++.-..+-|+.+.+.||++.||+++. -.||+||+.++. ++.+|++|...|++|.
T Consensus 15 sA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 5788999999999988 788888888889999999999999999985 579999999654 6899999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES- 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~- 766 (847)
|..+|+++++|+.||+|||||+|. ..+-+.| .|.++|++|..+|+-..|| +|+.+|.|+|||+++..|...+-...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999998 4555555 5789999999999987666 99999999999999998887776543
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccc-eeeeccccc--CCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINA-NIFCGLGWY--GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~-~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
..+.++... +...+..+...|..++|+...... ..+.+...+ +...+.... .+++..+|++++.|.+|+||
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-----lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-----LSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE-----ECCCCcEEEeecCCceEEEE
Confidence 456666654 456777888899999999543211 111111111 111111111 23478999999999999999
Q ss_pred EccCC
Q 003106 843 IAGTY 847 (847)
Q Consensus 843 ~~gty 847 (847)
...+|
T Consensus 243 n~~~~ 247 (311)
T KOG0315|consen 243 NTDDF 247 (311)
T ss_pred ecCCc
Confidence 98764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=220.70 Aligned_cols=235 Identities=23% Similarity=0.359 Sum_probs=195.9
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccC
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~ 624 (847)
+.|..++.++.|.-+|.++++++.+ -|||+.+++....+.... ...+| .-|...+. +.+.|+.|+|+.+..
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-~~~lD---VdW~~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-APALD---VDWQSNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-CCccc---eEEecCceEeecCCCceEEEEEecC
Confidence 4566688999999999999999888 589999887765543221 11121 23555444 788899999999875
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC---------CEE
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------PRL 695 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~---------~~L 695 (847)
. +++.++.+|.+.|.+|.|+|.|.+|++|++|++++||.+........|.+|+..|..+.|+|+| ..|
T Consensus 349 ~---~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 349 D---RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred C---CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 5 6888999999999999999999999999999999999999999999999999999999999954 468
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA- 774 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~- 774 (847)
++++.|++|++||+.. +.++.+|..|..+|++|+|+|+|+ ++++|+.||.|.||++++++.++.+.+... |..+.+
T Consensus 426 ~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn 502 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWN 502 (524)
T ss_pred EEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCCCe-EEEEEEc
Confidence 9999999999999998 899999999999999999999988 567999999999999999999999987665 333333
Q ss_pred cCCCEEEEEcCCCcEEEEcC
Q 003106 775 MNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~ 794 (847)
..+.++-....++.+.+.|.
T Consensus 503 ~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 503 AAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCCEEEEEecCCCceEEEe
Confidence 34467777778888777664
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=227.39 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=215.0
Q ss_pred CCcceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..+.|+..|.+++.+... -+|+......+-. -.|.++...++-+++|+ +++.|++|+|||...+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-----QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-----QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-----ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 345678888899999887765 5788876654432 23445555667788887 8999999999999987
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCCC-c
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK-T 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~Dg-~ 703 (847)
.++.++..|+..|+.+.|+.+|+.|++.|-||+|+.||+...+..++|.... -...||+..|.|..+++|+.|. .
T Consensus 383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEE
Confidence 6889999999999999999999999999999999999999999999997554 3368999999999999998776 5
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
|.||++.+ +..+..+.||.++|.+++|+|.+. +|+++++|.+||+||+-... .+.++.. ...+..+.+. ++..+.
T Consensus 460 IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 460 IFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEeec-CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEE
Confidence 99999999 899999999999999999999988 77899999999999996543 3444443 3334555554 455677
Q ss_pred EEcCCCcEEEEcCCcccce--eeecccccCCC----------CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINAN--IFCGLGWYGSD----------EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~----------~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
....+|.|.+||....... +..+....+.. ......+..-|-+.++.+|++|+....|++|++.+
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 8888999999984321110 11111111100 01112233334456899999999999999999854
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=236.57 Aligned_cols=237 Identities=23% Similarity=0.332 Sum_probs=188.3
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC-----CCCCCCcEEEEeccCC
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-----t~~~d~~v~vwd~~~~ 625 (847)
.+.++....+|..+++++.+ ++|.+.+....... +....++...|... .+..+ +.+.|.++++|++...
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~--~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC--VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhh--hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 33444444677777776655 89988433221110 11111122222221 11111 6889999999999873
Q ss_pred c------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 626 F------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 626 ~------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
. .+....+...|...|+|++++|+.++|||||.|++++||+++......++.+|+..|+||.|++....++|+|
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc
Confidence 1 1222224568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RP 778 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~ 778 (847)
.|++|+||.+.+ ..|+.+|.||...|..+.|-.+++.++ +|+.||.|++|++++++|+.++..|...||.+.... ..
T Consensus 525 gD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 525 GDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred CCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 999999999999 899999999999999999999988555 999999999999999999999999999999998654 34
Q ss_pred EEEEEcCCCcEEEEcCC
Q 003106 779 CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~ 795 (847)
.++++..||.|.+|...
T Consensus 603 ~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeEecCCCeEEEEeecC
Confidence 67789999999999743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=218.51 Aligned_cols=236 Identities=23% Similarity=0.306 Sum_probs=187.5
Q ss_pred eEEeeecCC----CCCCCCcEEEEeccCCceee-----EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003106 601 VESFLSHDD----TDPRDAGGRGMDVSQGFSFK-----EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 671 (847)
Q Consensus 601 v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~-----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~ 671 (847)
-+..+++|+ +++.||.|.+|+..+|..-+ ....+.-+...|.|+.|+.|...||+|+.||.|+||.+.+|.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence 344567777 88999999999998883222 223466788999999999999999999999999999999999
Q ss_pred eeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 672 SKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 672 ~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+++.|. .|+..|+|+.|+.|+..+++++.|.+|||.-++. +++++.|.||.+.|+...|.++|.+++ +++.||+|+|
T Consensus 297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkv 374 (508)
T KOG0275|consen 297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKV 374 (508)
T ss_pred HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEE-EecCCccEEE
Confidence 999997 8999999999999999999999999999999998 899999999999999999999998766 9999999999
Q ss_pred EECCCCceEEEEeeCC--ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 751 WSINNGSCTRVFKVES--FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 751 WD~~~~~~~~~~~~~~--~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|+.++.+|+.+|+... ..|..+... +...+..+.....+++.+...--...+......+++++. .+.++.
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~------~~lSpk 448 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN------AILSPK 448 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE------EEecCC
Confidence 9999999999998654 344444332 334455556666677766432222222222223333332 334557
Q ss_pred CcEEEEEeCCCeEEEEEc
Q 003106 827 ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~ 844 (847)
+.++++.+.|+.++.|.+
T Consensus 449 GewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CcEEEEEccCcEEEEEEe
Confidence 899999999999999876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=228.87 Aligned_cols=267 Identities=18% Similarity=0.272 Sum_probs=205.4
Q ss_pred CCCcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+..+++.++. .++.++. .++|+-...............+.+...++.+. .+. .++.|++|.+|.....
T Consensus 14 ~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 14 KSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred ccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEEecCCC
Confidence 3334444444333 3444433 38999877665543221112222222233333 232 6899999999999865
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
.++.++++|...|+|++...++. |++||+|.+++||.. +++...+.+|...|+++++-|++ .++|||.|++||
T Consensus 92 ---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIk 164 (745)
T KOG0301|consen 92 ---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIK 164 (745)
T ss_pred ---CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceee
Confidence 78899999999999999888877 999999999999976 46666799999999999999988 889999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE-ecCCCEEEEEc
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN-AMNRPCLWDKL 784 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~ 784 (847)
+|.- +.++++|.+|.+.|+.|++-+++. |++|+.||.|++||+ +|+++.++.+|...+++++ ..+...+.+..
T Consensus 165 lWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 165 LWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 9986 457999999999999999999865 459999999999999 7999999999999999998 66778889999
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|+++++|+.......+. ..+..+|++.+.. ..-|++||.||.||||.+.
T Consensus 239 EDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~--NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 239 EDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLL--NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCceEEEeecCceEEEEe---------cCccceEEEEEee--CCCEEEeccCceEEEEEec
Confidence 999999998662221111 1234578877654 3448999999999999763
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=231.06 Aligned_cols=270 Identities=19% Similarity=0.223 Sum_probs=215.2
Q ss_pred cceEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~ 627 (847)
.-.++|.|.--++++ ++..++||.+=+.+...++. +|+.|+-...+.. +++.|.+|++|+....
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde------HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-- 83 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-- 83 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc------cCCccceeeecCCCCeEEecCCccEEEEEecccc--
Confidence 345677777777766 45669999998887776543 5666666555444 7899999999999866
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+++.++.+|-+.|+.+.|++.-.+|+++|+|-+|+||+..+++++..+++|...|+|..|+|..+.++++|.|-+||||
T Consensus 84 -rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 -RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-------C---------------------ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--
Q 003106 708 DADNP-------G---------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-- 757 (847)
Q Consensus 708 D~~~~-------~---------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-- 757 (847)
|+... + .....+.||...|+-++|+|.-. ++++|++|..|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce
Confidence 98531 1 11345689999999999999977 77899999999999998655
Q ss_pred eEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 758 CTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+.+.++|...|.|+-+.. ...+.+.++|+.|++||......... . .....+.|-++.++ ..+++++| .|
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t-f------rrendRFW~laahP-~lNLfAAg-HD 312 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT-F------RRENDRFWILAAHP-ELNLFAAG-HD 312 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee-e------eccCCeEEEEEecC-Ccceeeee-cC
Confidence 4556778999998887765 46788999999999999654322211 1 11235678888777 45555544 55
Q ss_pred CeEEEEEc
Q 003106 837 SSLSSFIA 844 (847)
Q Consensus 837 G~V~vW~~ 844 (847)
+-+.||++
T Consensus 313 sGm~VFkl 320 (1202)
T KOG0292|consen 313 SGMIVFKL 320 (1202)
T ss_pred CceEEEEE
Confidence 55666665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=227.49 Aligned_cols=275 Identities=19% Similarity=0.272 Sum_probs=218.0
Q ss_pred CCCCcceEEEecCCCeEeec--CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 552 GTTSKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~--~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
|...+.+++++.|...++++ ++.+||+.+++.+...+.-. ..-.+.|...|. .+...|.+.++|+...
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG------YILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc------cEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 44567899999999888776 45599999999877654322 111223444443 6888899999999876
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeEEEc-------cCCCCeEEEEEcCCCCE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----LKSKTNLE-------EHSSLITDVRFSPSMPR 694 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~-------~h~~~I~~v~fsp~~~~ 694 (847)
..+.++++|.+.|++++.+||++.++|||.|++|++||..- +...+.+. .-...|.|+.+|||+++
T Consensus 445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 56667789999999999999999999999999999999641 21111111 23567999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
||.+-.|.+|+||-+++ -+....+.||.-+|.|++.+||++ +++||+.|.+|+||-+.=|.|.+.|-+|...|.++.|
T Consensus 523 LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred EEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 99999999999999998 566677889999999999999987 7779999999999999999999999999999999988
Q ss_pred cCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 775 MNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 775 ~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+. ..+|++..++.|+-||...... +. .-......+|..+..+ ++.++++++.|.+||+|...
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~kFe~--iq-----~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEKFEE--IQ-----KLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred cccceeEEEecCcceEEeechhhhhh--he-----eeccchheeeeeEEcC-CCCeEEeccCCceeEeeecc
Confidence 765 4678999999999998543211 11 1122345577777666 58999999999999999754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=199.97 Aligned_cols=220 Identities=20% Similarity=0.291 Sum_probs=179.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|.+|++|+...+ ..++++.+|...|.+++.+.|...|++|+.|+.|.+||+.+|+.++.|.+|.+.|+.|+|+
T Consensus 34 tcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 7899999999999977 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
.+...+++|+.|.+|++||.+.. .+++..+....+.|.+|..... .+++|+.||++|.||+|.|.....+-++.
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sDy~g~p-- 185 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSDYFGHP-- 185 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeehhhcCCc--
Confidence 99999999999999999999863 4567888888899999998743 67799999999999999998766655544
Q ss_pred EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeec-ccccCCCCcccccccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCG-LGWYGSDEIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|.|+.+. +..++..++-++.+++.|... .+++.. .++... .+.+.| ..-....+++|+.||.|++|++-
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~t--GklL~sYkGhkn~------eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKET--GKLLKSYKGHKNM------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccch--hHHHHHhcccccc------eeeeeeeecccceeEEeccCCceEEEEEec
Confidence 5666554 456778888899999988542 222221 122111 122222 22245779999999999999973
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=216.07 Aligned_cols=281 Identities=15% Similarity=0.156 Sum_probs=208.1
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEec
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~ 622 (847)
..+...+..+.||++|+++++++.+ -||++.......-...+ .|......-+.+++|+ +++.+..+++||+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee--ecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 3556678999999999999998877 67988654332221222 1223334445567776 8889999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~D 701 (847)
.+|....... .+|...+.|++|.|||..|++|+-|++|..||++ |..+...++-. ..|.++++.+||+++++.+.|
T Consensus 299 ~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 299 DTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred Ccchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9983222211 2356899999999999999999999999999988 44444444432 459999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---eEE-EEEecCC
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF---CCW-CVNAMNR 777 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~---~v~-~~~~~~~ 777 (847)
..|++++.++ ...+.... ....|++++.+.+++.+| +.-.+..|++||++..+.+..+.+|.. .+. |+...+.
T Consensus 376 ~~i~l~~~e~-~~dr~lis-e~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 376 KKIRLYNREA-RVDRGLIS-EEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred cceeeechhh-hhhhcccc-ccCceeEEEEcCCCcEEE-EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 9999999987 44443333 346799999999988555 666689999999998888888888754 233 4444566
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+.+|++|+.|+||+.... ..+.... .+...+.++.|+ |.+..++|+|+.||+||||..+
T Consensus 453 ~fiaSGSED~kvyIWhr~sg--kll~~Ls-GHs~~vNcVswN----P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG--KLLAVLS-GHSKTVNCVSWN----PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCC--ceeEeec-CCcceeeEEecC----CCCHHHhhccCCCCeEEEecCC
Confidence 88999999999999996532 2222221 234455565565 6678899999999999999875
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=208.09 Aligned_cols=208 Identities=23% Similarity=0.318 Sum_probs=170.7
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++..+.+|++.|+++.|+|+|.+||||+.|..|.+|++. ..+...++++|++.|+.|.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445567999999999999999999999999999999965 5566778899999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCC
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAG 787 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g 787 (847)
+++ +++++.+++|...|++++-+.-|..++++++.|+++++||+|+..+++++.... .+.++.+ +....+.++.-++
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccccC
Confidence 999 899999999999999999777788899999999999999999999988885433 3444444 4556788899999
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
.|++||.+........ .+ +.+.++.. . ....+.++.+-+-|.+|++|++..|
T Consensus 197 ~ikvWd~r~~d~~~~l-sG--h~DtIt~l----s-ls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTL-SG--HADTITGL----S-LSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ceeeeccccCcceEEe-ec--ccCceeeE----E-eccCCCccccccccceEEEEEeccc
Confidence 9999997643332221 11 12222222 1 1236788999999999999999876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=201.81 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=179.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
.|.+.|.|+..+..+.+...+. -.+.+.+++|++ ..+.+++++.||+++|||+. ..+++..+++|...|.+|+|++.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 4455566665443444444443 467799999999 45789999999999999965 45788999999999999999986
Q ss_pred C-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 692 M-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 692 ~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
. ..+++++.|++|++||... ...+.+|.||...|+...|+|...++|++++.|+++++||++.......+..|...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 4 4678889999999999987 7789999999999999999999999999999999999999997554555888888888
Q ss_pred EEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 771 CVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 771 ~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|+.+. +...++++..++.|++||.+..+..++.-.++ .-.+ -.+.+.+....+|++++.|-++|||+..
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AV----Rkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAV----RKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEE----EEEecCcchhhHhhhccccceEEecccc
Confidence 87654 66788999999999999988776655544322 2222 2344556677899999999999999863
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=210.74 Aligned_cols=227 Identities=23% Similarity=0.341 Sum_probs=175.9
Q ss_pred CcceEEEecCCCeEeecCCCe-------EEeCCCCchhhccccccccCCCCCceEE-eeecC-----CCCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQ-------LWDDKDLELRADMDRLVEDGSLDDNVES-FLSHD-----DTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~-------iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d-----~t~~~d~~v~vwd 621 (847)
.+..+.|+.|++.+++.+..| +||.-+ -..++. ++...+.. -+.+. .+++.|.+|.+|+
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~--SvGei~------GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe 176 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN--SVGEIT------GHSRRINSVDFKPSRPFRIATGSDDNTVAFFE 176 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCC--ccceee------ccceeEeeeeccCCCceEEEeccCCCeEEEee
Confidence 456789999999988876552 355432 111110 01111111 11111 1788888888876
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCCCEEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~~~Lasg 698 (847)
|..|+...+++.|..-|.|++|+|||++|||++.||+|.|||=.+++.+..|. +|.+.|.+|.|+||+..|+|+
T Consensus 177 ---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 177 ---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred ---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 44788899999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred eCCCcEEEEECCCCC------------------------------------------ceEEEeccCCCCeEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHPNKD 736 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~------------------------------------------~~~~~~~~h~~~V~sl~fsp~g~ 736 (847)
+.|.++||||+.+.. ..+.++.||...|+++..+++++
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 999999999998731 12345568999999999999997
Q ss_pred eEEEEEeCCCcEEEEECCCCceEEEE-eeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 737 DLICSCDGDGEIRYWSINNGSCTRVF-KVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 737 ~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
+ |++|+.||.|.-||..++.+-+.. +.|...|.++.......+++..-|..+++.+
T Consensus 334 ~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 334 T-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS 390 (603)
T ss_pred E-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence 5 559999999999999998866655 6777788888777666666666666666654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=217.94 Aligned_cols=222 Identities=22% Similarity=0.259 Sum_probs=183.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
.++.-|-+-||++.+. ..+....+|...|+|++++|||.+||||++||+|+|||..++-|+.+|..|+..|+.+.|+
T Consensus 325 g~~klgQLlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred cCCccceEEEEEeecc---ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 4555678899998865 4566678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCC-cEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDG-EIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~~~~~~~~~~~~~~ 767 (847)
..++.|++.|.||+||.||+.. ....++|..-. ....||+..|.|. ++++|+.|. .|.||++.+|+.+..+.+|.+
T Consensus 402 ~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 9999999999999999999997 77888886543 3467889999987 676787774 699999999999999999999
Q ss_pred eEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.|.++.+. ....+++++-|.+|++|+.......+... .+...+..+.+.| ++.-|+++.-||.|.+||.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-------~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-------EIRSDVLAVSFRP-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-------eeccceeEEEEcC-CCCeEEEEEecceEEEEEh
Confidence 99998766 34578899999999999965432222111 1112222344445 6888999999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=228.65 Aligned_cols=220 Identities=21% Similarity=0.277 Sum_probs=186.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++..+.++++||..++ ..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++|||+.++.+..++.+|.+.|.++..
T Consensus 223 ~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred ecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 6778889999999876 45555 9999999999999887889999999999999999999999999999999999987
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
. ..++++|+.|.+|++|++.+ +.++.++.+|.+.|.+|..+ +. ++++|+.|++|+|||+++++|++++.+|...
T Consensus 300 ~--~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 300 D--PFLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred c--CceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 6 44788899999999999998 88999999999999999998 33 7779999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
|.++.+.....++.++.++.|++||..... .+.....+...+. + ...+...+|++++.||+|++||..++
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v---~---~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLV---S---SLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCcccc---c---ccccccceeEeccccccEEEeecccC
Confidence 999977766889999999999999976542 2222222222111 1 23345788999999999999998653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=204.53 Aligned_cols=282 Identities=21% Similarity=0.281 Sum_probs=199.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccc--------------cccccCCCCCceEEeeecCC-----
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMD--------------RLVEDGSLDDNVESFLSHDD----- 609 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~--------------~~~~~g~~d~~v~~~~s~d~----- 609 (847)
|.......+|++||..+++++.+ +|+|+..+....... +.+++. .+.|.....+..
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH--~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH--VDEVNDLDFHPRETILI 188 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc--cCcccceeecchhheEE
Confidence 34456678999999999998877 889987432211111 111111 111211111111
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v 686 (847)
++++|++|+++|..+. ..+.....-.....|.||.|+|.|.+|+.|.+..++++||+++.++...- ..|++.|++|
T Consensus 189 S~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred eccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 7899999999999876 33333333345678999999999999999999999999999998876543 3699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-cCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+++.+++.++++.||.|+|||--. .+|+.++. .|. +.|++..|..+++++| +.+.|..|++|.+.+++++.++.+
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEec
Confidence 9999999999999999999999887 77888774 454 5799999999998665 888999999999999999999987
Q ss_pred CCceE------EEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 765 ESFCC------WCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 765 ~~~~v------~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
....- ..+......+ ++-....+.+..||.+..........++.+. ..|- .+++.+..|++|+.|.
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i--~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWI--VHSPVEPAFMTCSDDF 418 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEE--EeCCCCCceeeecccc
Confidence 63211 1222222233 3333445668888877555444444443221 1222 1445677899999999
Q ss_pred eEEEEEcc
Q 003106 838 SLSSFIAG 845 (847)
Q Consensus 838 ~V~vW~~g 845 (847)
.+|+|...
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=207.11 Aligned_cols=226 Identities=17% Similarity=0.269 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCcee----EEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~~~----~~l~~h~~~ 682 (847)
++..||.+++||... +...++.+|.++|.+++|.-. ...|++++.|.++++|-++.+..+ ....+|...
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS 195 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence 788999999999854 688899999999998888653 346999999999999998865433 334599999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------------CceEEEeccCCCCeEEEEEecCCCeE
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~------------------------~~~~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
|-+|+..+++.++++|+.|.+|+||+..+. +.++.++.||...|.+|.|++. ..
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v 273 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TV 273 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--Cc
Confidence 999999999999999999999999993321 2346778899999999999984 36
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPS 817 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 817 (847)
+++++.|.+|++||+.++.++..+.+... ..|+.... ...+.+++.+..+++||.+.....+.......+..-+....
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcc-eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 67999999999999999999888876554 55565443 45677899999999999776655554443333455666666
Q ss_pred cccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 818 WKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 818 w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
|+ +.++..|++|+.|+++++||+.+
T Consensus 353 ws----p~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 353 WS----PTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred cC----CCCceEEEEEecCCeEEEEEecc
Confidence 66 55788999999999999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=227.05 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=194.5
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeec--CC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSH--DD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~--d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
++||..++..... .-..+.+.|..+... ++ ++..|.++++||+.++ .+..++.+|.+.|.|+...
T Consensus 231 ~~~~~~~~~~i~~-----~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~~~~-- 300 (537)
T KOG0274|consen 231 HLWDLNNGYLILT-----RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCLTID-- 300 (537)
T ss_pred EEeecccceEEEe-----eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEEEcc--
Confidence 6899988765542 011233334433222 32 7889999999999887 7889999999999999875
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++++|+.|.+|+||++.++..+.++.+|.+.|.+|.++ +.+|++|+.|++|+|||+.+ +.++.++.+|...|+++
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSL 377 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEE
Confidence 4588899999999999999999999999999999999998 78999999999999999997 89999999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWY 808 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 808 (847)
.+... ..+++|+.|++|++||+++. +|+.++.+|...+.++... ...+.....++.|++||.............
T Consensus 378 ~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-- 452 (537)
T KOG0274|consen 378 IVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGR-- 452 (537)
T ss_pred EecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccccEEEeecccCceeeeeccC--
Confidence 88875 35669999999999999999 9999999999988766643 446667788889999985533322211111
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+...+ +.+ ......+++++.||++++||+.+
T Consensus 453 ~~~~v----~~l---~~~~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 HVGGV----SAL---ALGKEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred CcccE----EEe---ecCcceEEEEecCCeeEEEeccc
Confidence 11111 111 11246799999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=201.69 Aligned_cols=277 Identities=17% Similarity=0.179 Sum_probs=210.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|..+..+++.+|+.+++++++.+ .||++.+++.... -.+..|..+++.+++|+ ++.-+|.|+||+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-----ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-----LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-----ecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 455567888999988888888766 7899999985443 23334555667788888 89999999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ .....+......|.-+.|+|-+.+|+.|+.||.|-+|.+.+......+.+|..+++|=+|.|+|++++++..||+
T Consensus 137 tg---~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TG---GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cC---ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 88 344445456778999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEec---------------------------------------------------cCCCCeEEEEEe
Q 003106 704 VRVWDADNPGYSLRTFM---------------------------------------------------GHSASVMSLDFH 732 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~---------------------------------------------------~h~~~V~sl~fs 732 (847)
|++||..+ +..+.++. .+...+.||.|.
T Consensus 214 i~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 214 IIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred EEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999988 33332222 122223333333
Q ss_pred cCCC--eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCC
Q 003106 733 PNKD--DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGS 810 (847)
Q Consensus 733 p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 810 (847)
|... -|+++|+-||+|.|||+...+..+.+. |...|..+.+.+...+++++.+|.|+.||.+.......+ .++.
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~-- 368 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQ-- 368 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCc--
Confidence 3211 267788999999999999887666665 444477777777889999999999999998755433222 2221
Q ss_pred CCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 811 DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 811 ~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+.++...+ +.++++|+|.|++.+||++-
T Consensus 369 ----~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 ----MGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----hheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 1122222233 78999999999999999873
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=213.14 Aligned_cols=243 Identities=23% Similarity=0.309 Sum_probs=195.9
Q ss_pred ceEEeeecCC----CCCCCCcEEEEeccCCceeeEe--------------EEe-ecCCCCEEEEEEcCCCCEEEEEeCCC
Q 003106 600 NVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEA--------------NSV-RASTSKVICCHFSSDGKLLATGGHDK 660 (847)
Q Consensus 600 ~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 660 (847)
.++++++.++ +++.+++|.-|++.++...+.+ ..- ++|...|.|+++++||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 4455667665 7888999999999988533111 111 37899999999999999999999999
Q ss_pred cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.|.|||.++.+.+..+++|.+.|.+++|-.....|++++.|++|++|++.. ...+.++.||.+.|.+|+....++ .+.
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~vetlyGHqd~v~~IdaL~reR-~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVETLYGHQDGVLGIDALSRER-CVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hHHHHHHhCCccceeeechhcccc-eEE
Confidence 999999999999999999999999999998888999999999999999997 667889999999999999887755 666
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCC---ccccc
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE---IPAPS 817 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~ 817 (847)
.|+.|+++++|++. .+....|.++...+-|+++.+...+.+|+++|.|.+|+.............+.-... +....
T Consensus 303 VGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~ 381 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF 381 (479)
T ss_pred eccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence 77799999999994 455677888888999999999999999999999999997654444333333321111 22223
Q ss_pred ccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 818 WKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 818 w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|-... ......++++|+.||.||+|.+.
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEec
Confidence 54332 12257899999999999999975
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=239.90 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=190.9
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc----ee-eEeEEeecCCCCE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF----SF-KEANSVRASTSKV 641 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~----~~-~~~~~l~~h~~~V 641 (847)
+..++|+............ .....+...|.. -+.+++ +++.|++|++||+.... .. .....+. +...|
T Consensus 458 gl~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQ-GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhcccceEEEEeecc-ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 3456666665544322111 111112333443 244444 78899999999976421 11 1222333 45689
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 642 ICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 642 ~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.+++|++ ++.+|++|+.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.|++|+|||+++ +.++..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEE
Confidence 9999987 578999999999999999999999999999999999999997 788999999999999999998 6777777
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
..+ ..|.++.|++....+|++|+.||.|++||+++++ .+..+.+|...|.++.+.+...+++++.++.|++||.....
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence 654 6799999976545577899999999999999876 56778889889999988877889999999999999965321
Q ss_pred -----ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 799 -----ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 799 -----~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+....+ +...+.. +.+.+ ++.+|++|+.||.|++|+..
T Consensus 694 ~~~~~~~l~~~~g--h~~~i~~----v~~s~-~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 694 SGINETPLHSFMG--HTNVKNF----VGLSV-SDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred cccCCcceEEEcC--CCCCeeE----EEEcC-CCCEEEEEeCCCEEEEEECC
Confidence 11111111 1112222 22223 46899999999999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=219.12 Aligned_cols=222 Identities=17% Similarity=0.223 Sum_probs=174.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|+||++.. ..++++++.+|..+|.+++|+.+|..|+++|.|+.|++||+++|+++..|. -...++||.|+
T Consensus 232 S~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~ 308 (503)
T KOG0282|consen 232 SGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH 308 (503)
T ss_pred ecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecC
Confidence 467889999999987 347899999999999999999999999999999999999999999998885 33568999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-------
Q 003106 690 PSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------- 761 (847)
Q Consensus 690 p~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~------- 761 (847)
|++ +.|++|+.|+.|+.||+|+ ++.+.++..|-+.|..|.|-++|.+++ +.+.|++|+||+.+.+..+..
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~g~rFi-ssSDdks~riWe~~~~v~ik~i~~~~~h 386 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDEGRRFI-SSSDDKSVRIWENRIPVPIKNIADPEMH 386 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccCCceEe-eeccCccEEEEEcCCCccchhhcchhhc
Confidence 998 7889999999999999999 788999999999999999999998665 889999999999875422211
Q ss_pred -------------------------E--------------eeCCc---eEEEEEecCCCEEEEEcCCCcEEEEcCCcccc
Q 003106 762 -------------------------F--------------KVESF---CCWCVNAMNRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 762 -------------------------~--------------~~~~~---~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
| ++|.. .+.+-+..+...|..|..+|.+.+||....
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-- 464 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-- 464 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh--
Confidence 1 11111 111222234567889999999999996532
Q ss_pred eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 800 NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+++.. ..+...+....|. +.....+||++.||.|+||+
T Consensus 465 kl~~~l-kah~~~ci~v~wH----P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 KLVSKL-KAHDQPCIGVDWH----PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhcc-ccCCcceEEEEec----CCCcceeEecccCceeEecC
Confidence 222222 2233444444444 66778899999999999996
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=211.69 Aligned_cols=270 Identities=18% Similarity=0.275 Sum_probs=201.2
Q ss_pred CCCcceEEEecCCCe-E-eecC-CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAG-T-LTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~-~-~~~~-~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
...+.+++|+|..-+ + ++++ ...||+..+......+.+|.... ...-+-.|+ .+...|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v-----~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVV-----YSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccce-----eEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 345678899984332 2 3333 23789999888887766653221 111233344 5777899999996542
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCc
Q 003106 626 FSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKT 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~ 703 (847)
..+..+.+|..+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.|.|.+|+|-.. .++|||+||+
T Consensus 101 ---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 101 ---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred ---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 35667899999999999999 667888999999999999999888778999999999999999755 7799999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
||+||++.....+.++ .|..+|.+|.|-|.|. ++++++ ...|+|||+.+|. .+..+..|...|+|+.+. +..+++
T Consensus 178 vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 9999999855556666 5999999999999987 566776 4589999999664 445555589999999765 457899
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+++-|+.+++|+.. +..+.....+ ...+.++...+ ++..++.|-.||.+.+=
T Consensus 255 S~sLD~~VKVfd~t--~~Kvv~s~~~------~~pvLsiavs~-dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTT--NYKVVHSWKY------PGPVLSIAVSP-DDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ecccccceEEEEcc--ceEEEEeeec------ccceeeEEecC-CCceEEEecccceeeee
Confidence 99999999999943 2222322222 22233333333 67889999999988764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=203.94 Aligned_cols=264 Identities=20% Similarity=0.309 Sum_probs=199.8
Q ss_pred CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEEeccCCc-eeeEeEEe
Q 003106 565 GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGMDVSQGF-SFKEANSV 634 (847)
Q Consensus 565 G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vwd~~~~~-~~~~~~~l 634 (847)
+++++++..+ ++||.+........+ ..+.+ . -+.|...+. +++.|.++++|.++.+. ..+.+...
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~G---ht~~i-k-~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVG---HTGPI-K-SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEec---CCcce-e-eeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh
Confidence 5667765544 899987543221100 11111 1 123333333 68899999999998873 23344445
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCceeEEEccCCCCeEEEEEc
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------------------------TLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------------------------~~~~~~~l~~h~~~I~~v~fs 689 (847)
.||...|-|++..+||.++++|+.|.+|+||+.. ++.++.++.+|...|.+|.|+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 6999999999999999999999999999999932 123566788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc---eEEEEeeCC
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKVES 766 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~---~~~~~~~~~ 766 (847)
+ ...+++++.|.+|++||+.+ +.+..++.+ ...++|++.+|... +|++|+.|..||+||.|++. ....|.+|.
T Consensus 270 d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred C-CCceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 8 67899999999999999999 555666654 35689999999755 78899999999999999863 456788999
Q ss_pred ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+|..+... +...+.+++.|+.+++||.+.....++...++ .+.+.+..|. ++..|++|+.|.+|+|++-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h--~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH--NDKVLSVDWN------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC--CceEEEEecc------CCceEEeccCcceEEEecc
Confidence 999888765 45578899999999999988666555554443 5555666676 5779999999999999975
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
.
T Consensus 418 ~ 418 (423)
T KOG0313|consen 418 S 418 (423)
T ss_pred c
Confidence 3
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=199.96 Aligned_cols=149 Identities=25% Similarity=0.395 Sum_probs=138.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|....+|++.++ .....+.+|++.|+|+.|+.||.+||||+-+|.|+||++.++.....+......|.-+.|+
T Consensus 81 TGGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred ecCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 8999999999999998 3778889999999999999999999999999999999999999988887777889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|.+..|+.|+.||.|.+|.+.+ ....+.+.||...+++=+|.|+|++++ ++..||+|++||++++..+..+.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEec
Confidence 9999999999999999999998 577889999999999999999999765 99999999999999998887776
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=217.85 Aligned_cols=235 Identities=20% Similarity=0.350 Sum_probs=196.0
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEe
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd 621 (847)
..|..++..+.|.|.+-.+++++++ ++|+.+...+...+ .| +.+.|+..+.+.. +++.|-+||||+
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-----~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-----LG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-----cc-ccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 3567788899999999999999988 78999887665432 22 3334444333332 889999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------e
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------------------------S 672 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------------------------~ 672 (847)
..++ +++.++++|+..|.|..|+|...+++++|-|-+|||||+...+ .
T Consensus 122 wqsr---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 122 WQSR---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred ccCC---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 9977 7999999999999999999999999999999999999975210 2
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
...+++|...|+-++|+|.-..|++|++|..|++|.... ....+-++.||...|.++-|||..+ ++++.+.|++||||
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVW 277 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEE
Confidence 345679999999999999999999999999999999864 2345677899999999999999865 67799999999999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
|+....++.+|+......|+++..+...++...-|+-+.+|..
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 9999999999999999999999888888887777777777653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-23 Score=218.04 Aligned_cols=164 Identities=20% Similarity=0.401 Sum_probs=149.7
Q ss_pred eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 629 KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++++++|.+|..+|.+++|+.+|..|+|++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56788999999999999999 899999999999999999985 8999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcC
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLD 785 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~ 785 (847)
||+++ +.++..|. -...++|+.|+|++.++|++|+.|+.|+.||+|+++.+..+..|-..+..+.|.. ...+.+.++
T Consensus 285 wDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred ecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999 88888875 3456899999999988899999999999999999999999999999888887764 456778889
Q ss_pred CCcEEEEcC
Q 003106 786 AGDIQISDS 794 (847)
Q Consensus 786 ~g~i~i~d~ 794 (847)
++.++||+.
T Consensus 363 dks~riWe~ 371 (503)
T KOG0282|consen 363 DKSVRIWEN 371 (503)
T ss_pred CccEEEEEc
Confidence 999999983
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-22 Score=194.75 Aligned_cols=221 Identities=16% Similarity=0.195 Sum_probs=171.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~f 688 (847)
++..|-+.++||..+|. ++..+ .|+..|.+|+|+.|.++|+||+.++.+||||+.. ......+.+|.+.|..+.|
T Consensus 76 saaadftakvw~a~tgd---elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGD---ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhcccchhhhhhhhhhh---hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 67788899999999883 44444 4999999999999999999999999999999985 4466788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
....+.|+++++|++||+||.++ +..+.++. ....|+++.++++|+ +| +....+.|++||.++...++.++.....
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~-~~s~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~~lKs~k~P~nV 227 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRT-GTEVQSLE-FNSPVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFGLLKSYKMPCNV 227 (334)
T ss_pred eccCceEEeeccCCceEEEEecc-CcEEEEEe-cCCCCcceeeccCCC-EE-EEecCceeEEeccccccceeeccCcccc
Confidence 99999999999999999999999 77777775 557799999999987 44 5556789999999999988888766543
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-..-.......+.++.++..++.||............++ ...+.+ +.+.+ ++.+.++||.||+||+|...
T Consensus 228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhc----VrFSP-dGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHC----VRFSP-DGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEE----EEECC-CCceeeccCCCceEEEEEec
Confidence 322222344667788888888888855332211111121 222222 33334 78899999999999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=214.13 Aligned_cols=267 Identities=18% Similarity=0.323 Sum_probs=198.9
Q ss_pred cCCCeEeecCCC---eEEeCCCCchhhc---cccc------cccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 563 TDGAGTLTSPSN---QLWDDKDLELRAD---MDRL------VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 563 ~dG~~~~~~~~~---~iWD~~~~~~~~~---~~~~------~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
+.++++++++.+ ++|++....-.+. ..++ +.+..+...-..+. +++.|.+|++|+...+. -.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI----S~SsDtTVK~W~~~~~~-~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI----SASSDTTVKVWNAHKDN-TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE----EecCCceEEEeecccCc-chh
Confidence 567778888877 7899864332111 1111 11111111111111 57789999999998873 457
Q ss_pred eEEeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCC--ceeEE--------Ec-cCCCCeEEEEEcCCCCEEEEE
Q 003106 631 ANSVRASTSKVICCHF-SSDGKLLATGGHDKKAVLWHTDTL--KSKTN--------LE-EHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~f-spdg~~Lasgs~Dg~V~vwd~~~~--~~~~~--------l~-~h~~~I~~v~fsp~~~~Lasg 698 (847)
..+++.|.+.|.|+++ -++..++|+||-|+.|.|||+.++ ..+.. +. ++...|++++.++.|..|++|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 7889999999999999 778899999999999999999976 22222 23 788999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-R 777 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~ 777 (847)
+..+.|++||.++ .+.+..+.||.+.|..|..+.||.++| +++.||+|++||+...+|+.++..|...||++.... -
T Consensus 190 gtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 190 GTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred CcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 9999999999999 667778889999999999999999776 999999999999999999999999999999987653 4
Q ss_pred CEEEEEcCCCcEEEEcCCc-ccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLF-INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+++|..+|.|..-+... .....+|...+... .+..+. .+.-+.++..|+.|+-|...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~--------~l~~~~-~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL--------KLHLHE-HDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeecCCCchh--------hhhhcc-ccCCceeeeccccceecCCc
Confidence 5789999999999888654 23333333222111 111111 12334788889999988753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=194.60 Aligned_cols=224 Identities=26% Similarity=0.390 Sum_probs=182.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.++.+++|++.++ +....+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|+
T Consensus 26 ~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 102 (289)
T cd00200 26 TGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102 (289)
T ss_pred EeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEc
Confidence 4556899999999876 3566678899999999999999999999999999999999888888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++++|++++.|+.|++||+++ ...+..+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..+...+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 103 PDGRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred CCCCEEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 9988888888899999999997 677788888999999999999965 66677779999999999999999999888888
Q ss_pred EEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++.+.... .++.+..++.+.+|+...... ..... .+...+....|+ + ++.++++++.||.|++|++.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~----~-~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFS----P-DGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCce--ecchh-hcCCceEEEEEc----C-CCcEEEEEcCCCcEEEEEcCC
Confidence 888877665 778888899999999653211 11110 112223333333 3 367788888899999999864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=202.19 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=186.4
Q ss_pred CCCCCCcEEEEeccCCce-------eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeE
Q 003106 610 TDPRDAGGRGMDVSQGFS-------FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-------~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~ 674 (847)
+....+.|.|||..+... +.+-.++++|...-++|+|++ ..-.|++|+.|++|++||+... .+..
T Consensus 142 t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 142 TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 456678899999887522 233448899999889999999 5568999999999999998732 2345
Q ss_pred EEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 675 NLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
.+.+|.+.|.+|+|++.. ..|+++++|+.+.|||+|+ ..++....++|.+.|+|++|+|.+.++||||+.|++|++||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 678999999999999965 4678999999999999995 25666777899999999999999999999999999999999
Q ss_pred CCCC-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCccccee-------------eecccccCCCCcccc
Q 003106 753 INNG-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANI-------------FCGLGWYGSDEIPAP 816 (847)
Q Consensus 753 ~~~~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~-------------~~~~~~~~~~~~~~~ 816 (847)
+|+- .+++++.+|...|.++.+. ...++.+...++.+.+||...+.... |...|+ +..
T Consensus 302 lRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH------~~k 375 (422)
T KOG0264|consen 302 LRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH------TAK 375 (422)
T ss_pred chhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc------ccc
Confidence 9984 5889999999999999765 56678888899999999965444332 222222 333
Q ss_pred ccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 817 SWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 817 ~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+-++.+.++..-+|++.+.|+.+-||+..
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 44555668888899999999999999863
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=205.87 Aligned_cols=223 Identities=19% Similarity=0.251 Sum_probs=176.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
....+.+|+..+. ....++......|++++|..||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|.+
T Consensus 46 ~S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 46 SSVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred cccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 3445677877654 3444455567889999999999999999999999999988878889999999999999999976
Q ss_pred C-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEE
Q 003106 693 P-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCW 770 (847)
Q Consensus 693 ~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~ 770 (847)
+ .|++|++|+.+++||+.+ ......+.+|++.|.|.+|+|-.+.+++||+.||+||+||++.. ..+.++. |...|.
T Consensus 123 ~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe 200 (487)
T KOG0310|consen 123 NTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE 200 (487)
T ss_pred CeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee
Confidence 5 678899999999999998 55567889999999999999999999999999999999999987 5555664 555667
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
.+.+.+...+...+.+..+++||.......+..... +...+++..+. . ++.+|++|+-||.|+||++.+|
T Consensus 201 ~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~----s-~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLA----S-DSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred eEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc--ccceEEEEEee----c-CCceEeecccccceEEEEccce
Confidence 777777766667778889999996633322222221 33444443332 2 5688999999999999998776
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=204.13 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=207.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
..|+..+..+.+|...+++++++.. +|||+....-..-+.. +.+-.-+..++ |.+.+|+ .++...++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4566777889999999999998866 9999976532221111 12222233333 3355555 6778889999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
... +.+....+....-.+.+++.+||.++.++|+.||.|+|||+.+...++.|.+|.+.+.||++++||..|.||+.|+
T Consensus 495 Aap-TprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAP-TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCC-CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 876 5555555665566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE-
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW- 781 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~- 781 (847)
+||.||+++ +..+... ...+.|.++.++|.++++ +.|-.++.|.|..... .....+.-|..+|.++.|......|
T Consensus 574 tvRcWDlre-grqlqqh-dF~SQIfSLg~cP~~dWl-avGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLRE-GRQLQQH-DFSSQIFSLGYCPTGDWL-AVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhh-hhhhhhh-hhhhhheecccCCCccce-eeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceee
Confidence 999999998 4333332 245789999999999855 5888888888887764 3456777889999999887655544
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+...|..+..|..-+....+.... ...+.+ .+ ...+..+|+||++|....||.+-|
T Consensus 650 StGkDnlLnawrtPyGasiFqskE----~SsVls--CD---IS~ddkyIVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKE----SSSVLS--CD---ISFDDKYIVTGSGDKKATVYEVIY 705 (705)
T ss_pred ecCchhhhhhccCccccceeeccc----cCccee--ee---eccCceEEEecCCCcceEEEEEeC
Confidence 445556677777554322221111 111111 11 234688999999999999999865
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=212.80 Aligned_cols=225 Identities=17% Similarity=0.264 Sum_probs=177.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
++...|.|.+||+.....-+.+..|.+|+..|++++|++ ...+|++||.||+|++||++..+.+.++.+....|.+|.|
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 788899999999987433456668899999999999999 5578999999999999999999999999998999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-
Q 003106 689 SPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES- 766 (847)
Q Consensus 689 sp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~- 766 (847)
+|. +..|+++.+.|.|.+||+|.+..+...+..|.+.|.|+.|+|++. +||||+.|+.|+|||+.+.+.......+.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTi 263 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTI 263 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeec
Confidence 996 678999999999999999998899999999999999999999755 78899999999999999766444444333
Q ss_pred ceEEEEEecCCC--EEE--EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 767 FCCWCVNAMNRP--CLW--DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 767 ~~v~~~~~~~~~--~l~--~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
..|.++.+.+.. .+. +...+-.|.|||.......+. .-..+...++...|. ..+..++++++.||+|..
T Consensus 264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~--t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA--TFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ceeeeeeeccCccchhhhhhccccceEEEEeeccccccce--eeeccCccccceecc----CCCceeeEeecCccHHHH
Confidence 345666654332 222 233556799999653322221 112345566677777 345788999999998753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=217.33 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=159.9
Q ss_pred Eee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------------------------------
Q 003106 633 SVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------------------------------ 669 (847)
Q Consensus 633 ~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------------------------------ 669 (847)
.+. +|.+.|+||.|++||+|||+||.|+.|+||.+..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 8999999999999999999999999999997643
Q ss_pred ------------------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEE
Q 003106 670 ------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (847)
Q Consensus 670 ------------------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~f 731 (847)
.++++.|.+|.+.|.+|.|+.++ +|++++.|+|||||++.. ..|+.+|. |.+.|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEEe
Confidence 01233367899999999999765 899999999999999997 88999995 9999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCC
Q 003106 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGS 810 (847)
Q Consensus 732 sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 810 (847)
+|..+++|++|+.||.||||++...+.+.-...+ ..|+++++.+ +.....|+-+|.+++|+........-........
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9998899999999999999999987766555544 6677776654 4456688889999999865433222111111111
Q ss_pred CCc-cccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 811 DEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 811 ~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
... ..++-.+.+.+.+...|++.+.|..|||||.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 111 1123345555555667888999999999997
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=207.32 Aligned_cols=269 Identities=19% Similarity=0.244 Sum_probs=202.2
Q ss_pred ceEEEecCCCeEeecC-CCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccCCceeeE
Q 003106 557 PLMMFGTDGAGTLTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~-~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+.|+..+...++.+ ...+|+..++.+.... ..+ ...|+.. +..++ .+..+|.|.|||.... +.
T Consensus 181 nlldWss~n~laValg~~vylW~~~s~~v~~l~----~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~ 251 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELC----SFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KK 251 (484)
T ss_pred hHhhcccCCeEEEEecceEEEEecCCCceEEeE----ecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cc
Confidence 5677886666555555 4589999998754322 111 3334433 44444 6888999999999855 67
Q ss_pred eEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 631 ANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 631 ~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
+.++.+ |...|-|++|. +..|.+|+.|+.|.++|++..+.... +.+|...|..+.|++|+.+||+|+.|+.|.|||
T Consensus 252 ~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 777888 99999999998 67899999999999999997665544 889999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEE--EEE
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCL--WDK 783 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l--~~~ 783 (847)
... ...+..+..|.+.|..++|+|....+||+|+ .|+.|++||+.+++++..+..... |..+.+. ....+ -.|
T Consensus 330 ~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ-VcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 330 GLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ-VCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc-eeeEEEcCCCCEEEEecC
Confidence 976 6778888999999999999999888999886 589999999999999888876555 4444443 33233 345
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....|.+|....... +....+ + ..++..+.+.+ ++..|++|+.|.++++|++-.
T Consensus 408 ~s~n~i~lw~~ps~~~-~~~l~g--H----~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKL-VAELLG--H----TSRVLYLALSP-DGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccccce-eeeecC--C----cceeEEEEECC-CCCEEEEecccCcEEeccccC
Confidence 5667789998543111 111111 1 22233333344 689999999999999999754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=200.65 Aligned_cols=186 Identities=21% Similarity=0.270 Sum_probs=159.4
Q ss_pred CCCCCCcEEEEeccCCce----eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFS----FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~ 682 (847)
+++.|++|++||+..... ......+.+|.+.|.+++|++ +..+|+++++|+.+.|||++ +.++....++|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 788999999999987533 556778899999999999999 67789999999999999999 56777788899999
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-----
Q 003106 683 ITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----- 756 (847)
Q Consensus 683 I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----- 756 (847)
|+||+|+|-+. .|||||.|++|++||+|+...++.++.+|...|.+|.|+|..+.+|++++.|+.+.|||+..-
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999655 679999999999999999888999999999999999999999999999999999999999641
Q ss_pred ---------ceEEEEeeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCC
Q 003106 757 ---------SCTRVFKVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 757 ---------~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~ 795 (847)
+.+....+|...|..+.+... =.+.+..+++.+.||...
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 233555677777777765532 356788889999999843
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=189.06 Aligned_cols=222 Identities=15% Similarity=0.195 Sum_probs=172.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|.+|+|||+.+. +.+..+-.|.+.|+||.|.++-. .|++|++||.|.+|++....++.++++|.+.|+.|+
T Consensus 58 SGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 58 SGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeE
Confidence 7899999999999976 67778888999999999998665 899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
++|.+++.++.+.|+.+|+||+-+ ++.-..+ ..+. .+.|.|+|.|+++++.+. ..|-||.+.+-+....+...
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~--~~i~i~q~d~A~v~~~i~~~- 208 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVR-GRVAFVLNLKNK--ATLVSWSPQGDHFVVSGR--NKIDIYQLDNASVFREIENP- 208 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhc-CccceeeccCCc--ceeeEEcCCCCEEEEEec--cEEEEEecccHhHhhhhhcc-
Confidence 999999999999999999999987 3332222 2233 344999999997664443 57999999877655544433
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.|+.+.....+..+.+++.|.+||.... ...+.+..+.........+. .....+|+|++.||.|+|||+..
T Consensus 209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--~~~~~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 209 KRILCATFLDGSELLVGGDNEWISLKDTDSD--TPLTEFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccceeeeecCCceEEEecCCceEEEeccCCC--ccceeeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccc
Confidence 5577888889999999999999999997642 12222221111111111111 22457999999999999999853
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=177.82 Aligned_cols=273 Identities=14% Similarity=0.157 Sum_probs=200.5
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~ 624 (847)
...+.++.|+++|..++++..+ +|||..+++....+.... +...+.+|..++. +...|.+||..++.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 4567899999999999885544 899999998877544322 2222334433333 345689999999997
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
. +.++.+.||...|++|+.+|-+..+++++.|++|++||++..++...+..-.. -.++|+|.|-++|++...+.|
T Consensus 90 N---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 90 N---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred C---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence 7 78999999999999999999889999999999999999998887776654333 357899999999999888899
Q ss_pred EEEECCCC-CceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce----EEEEEecC
Q 003106 705 RVWDADNP-GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC----CWCVNAMN 776 (847)
Q Consensus 705 ~iWD~~~~-~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~----v~~~~~~~ 776 (847)
+|||+|.- +.+..+|. +-....+.|.|+|+|+.+|+ ++..+.+++.|.-+|..+.++..+... +.+....+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 99999964 33444443 34677899999999998874 455789999999999988888876433 24444456
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++.+.++|.|.+|+....+...... + .......+..| +.++..-.+.|..+.+|..
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~-~-~~~~~~~~~~f-------nP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLR-G-PNGGPVSCVRF-------NPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEec-C-CCCCCcccccc-------CCceeeeeecCceEEEEec
Confidence 6788899999999999975433222211 1 11222222223 3455555666778888864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=205.04 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=140.2
Q ss_pred CCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEE
Q 003106 612 PRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v 686 (847)
+.|++|++||+.++. ....+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||+++++.+..+.+|...|++|
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 344555555554321 113566788999999999999975 699999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCc-eEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHPNKDDLICSC---DGDGEIRYWSINNGS-CTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~-V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~~~-~~~~ 761 (847)
+|+|++.+|++++.|++|+|||+++ +..+..+.+|.+. +..+.|.+++..++.+| +.|+.|++||+++.. ++..
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9999999999999999999999998 6778888888765 45788999877666444 247999999999754 4444
Q ss_pred EeeCCc-eEEEEEec-CCCEEEEEc-CCCcEEEEcCCc
Q 003106 762 FKVESF-CCWCVNAM-NRPCLWDKL-DAGDIQISDSLF 796 (847)
Q Consensus 762 ~~~~~~-~v~~~~~~-~~~~l~~~~-~~g~i~i~d~~~ 796 (847)
+..+.. .+....++ +...++.+. .++.|++|+...
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 433332 33333333 344555554 699999999664
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=183.81 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=184.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~ 685 (847)
+++.|++|+|+.++.....+.+.++++|.++|.-++|.. -|.+||+|+.||+|.||.-+.++ ....+..|...|++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNS 107 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccccee
Confidence 788899999999998766688999999999999999987 89999999999999999988763 34456689999999
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCC-Cc-eEEEeccCCCCeEEEEEecC---C----------CeEEEEEeCCCcE
Q 003106 686 VRFSPS--MPRLATSSFDKTVRVWDADNP-GY-SLRTFMGHSASVMSLDFHPN---K----------DDLICSCDGDGEI 748 (847)
Q Consensus 686 v~fsp~--~~~Lasgs~Dg~V~iWD~~~~-~~-~~~~~~~h~~~V~sl~fsp~---g----------~~ll~s~s~Dg~V 748 (847)
|+|.|. |-.|++++.||.|.|.+++.. +. ..+....|.-.|++++|.|- | -+-|++|+.|..|
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V 187 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV 187 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce
Confidence 999997 557899999999999999875 22 23445789999999999986 3 1246799999999
Q ss_pred EEEECCCCc--eEEEEeeCCceEEEEEec-----CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccc
Q 003106 749 RYWSINNGS--CTRVFKVESFCCWCVNAM-----NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVS 821 (847)
Q Consensus 749 ~iWD~~~~~--~~~~~~~~~~~v~~~~~~-----~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 821 (847)
+||+..++. ...+|..|...|+.++.. ....+.+++.+|.+.||.... ......... .......+|++.
T Consensus 188 kiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e~e~wk~tl---l~~f~~~~w~vS 263 (299)
T KOG1332|consen 188 KIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-EYEPWKKTL---LEEFPDVVWRVS 263 (299)
T ss_pred eeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-ccCcccccc---cccCCcceEEEE
Confidence 999998864 335688999999888754 445789999999999998652 222221111 122455677777
Q ss_pred cccCCCcEEEEEeCCCeEEEEEcc
Q 003106 822 CRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.. .+++|+++++|..|.+|+..
T Consensus 264 WS~-sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSL-SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Eec-cccEEEEecCCcEEEEEEeC
Confidence 666 48899999999999999863
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=187.25 Aligned_cols=212 Identities=21% Similarity=0.281 Sum_probs=169.2
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.++..+++|.+.|.|+.|-..|+.++++++|.+..+||+++++++..+.+|....+.++-+|.-+++++++.|.+.|+||
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEec-CCCEEEEEcCC
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAM-NRPCLWDKLDA 786 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~ 786 (847)
++..-..+..|.||.+.|+++.|.-+.+ +++|+.|.+|+|||+++.+ .+.+++..+. +..+... +...|....++
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~-~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSP-ANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCc-cceeEeecCCceEEeccCC
Confidence 9976677899999999999999998744 5699999999999999865 5566655443 3334433 44466777788
Q ss_pred CcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 787 GDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..|++||..........+.. -.+...+++..|.-...- +-|++++.|..|.-|++.+
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~---cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA---CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcc---cccccccccceeeeeEecc
Confidence 88999996543332222221 123445667777633222 4488999999999999854
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=193.04 Aligned_cols=232 Identities=18% Similarity=0.190 Sum_probs=178.3
Q ss_pred eecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cC
Q 003106 605 LSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH 679 (847)
Q Consensus 605 ~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h 679 (847)
++++| +++.|.++.+|++.....++...++.+|..+|.-+.|+||.++|++|+.|..+++||+.+|...+.+. +|
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~ 311 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL 311 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc
Confidence 55666 78889999999988876789999999999999999999999999999999999999999999988875 34
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
...+.|++|.|||..+++|+.|++|..||++. ..+..+.+.. ..|.+++..+||++++ +.+.|..|++++.++..+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVD 388 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhh
Confidence 67899999999999999999999999999984 4555565543 5699999999999777 555799999999998776
Q ss_pred EEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 759 TRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
+..+..+. .+.++....+ ..+.....+..+.+||.. .+..+....|+.-+..+...++ ...+..++++||.|+
T Consensus 389 r~lise~~-~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCF----gg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 389 RGLISEEQ-PITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCF----GGGNDKFIASGSEDS 462 (519)
T ss_pred hccccccC-ceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEecc----CCCCcceEEecCCCc
Confidence 65554443 3444444433 344456677889999965 2322233333332222221111 233568999999999
Q ss_pred eEEEEEcc
Q 003106 838 SLSSFIAG 845 (847)
Q Consensus 838 ~V~vW~~g 845 (847)
.|+||+..
T Consensus 463 kvyIWhr~ 470 (519)
T KOG0293|consen 463 KVYIWHRI 470 (519)
T ss_pred eEEEEEcc
Confidence 99999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=207.56 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=189.4
Q ss_pred CCCCCCcEEEEeccCCce---eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFS---FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~ 684 (847)
++++||.|++|++..... -..+..+..|.+.|++++...+++.|+++|.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 689999999999876533 2246788999999999999999999999999999999999876 67888999999999
Q ss_pred EEEE-cCCCCEEEEEeCCCcEEEEECCCCCc-e--------EEEec-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 685 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY-S--------LRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 685 ~v~f-sp~~~~Lasgs~Dg~V~iWD~~~~~~-~--------~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
||++ .++...+|+|+.|+.|.|||+.++.. . ...+. |+...|++++.++.|. +|++|+.++.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecc
Confidence 9999 77888999999999999999997311 1 22233 7899999999999984 7889999999999999
Q ss_pred CCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE
Q 003106 754 NNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832 (847)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s 832 (847)
++++.+..+.+|...|.++... ++..+.++++||.|++|+...-++..... .....+|.+.+.+ +-..|++
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-------vH~e~VWaL~~~~-sf~~vYs 272 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-------VHKEGVWALQSSP-SFTHVYS 272 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-------eccCceEEEeeCC-CcceEEe
Confidence 9999999999999999988755 55689999999999999966433322211 1122378877765 5678999
Q ss_pred EeCCCeEEEEEccCC
Q 003106 833 GCGDSSLSSFIAGTY 847 (847)
Q Consensus 833 Gs~DG~V~vW~~gty 847 (847)
|+.||.|..-++.+|
T Consensus 273 G~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNP 287 (735)
T ss_pred cCCCCcEEecccCCc
Confidence 999999998887664
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=198.12 Aligned_cols=283 Identities=13% Similarity=0.229 Sum_probs=181.3
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhc-cccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRAD-MDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~-~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
|+..++.+++.|.|..+++++.+ ++||...+..... +..+..+..+..+...|....+ ......-++|+|-..
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 34456788999999999998866 8999987654322 2223333333333333322111 122233445555433
Q ss_pred Cce---------eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eeEEEc-----cCCCCeEEEEE
Q 003106 625 GFS---------FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLK-SKTNLE-----EHSSLITDVRF 688 (847)
Q Consensus 625 ~~~---------~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~-~~~~l~-----~h~~~I~~v~f 688 (847)
... +..+...++|...++|.+|+|+. ..|+||+.||++||||++..+ .+..|+ +..-.++.++|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 211 12233457999999999999955 579999999999999998543 233332 23346899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCc--eEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEe
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
++++++||+|+.||.|.+||...... ....-..|.. .|+||.|+++|..| ++-+.|+++++||++.. +++.++.
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchhhhc
Confidence 99999999999999999999865221 2333456776 89999999999855 59999999999999985 4666555
Q ss_pred eCC---ceEEEEEecCCCEEEEEc------CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 764 VES---FCCWCVNAMNRPCLWDKL------DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 764 ~~~---~~v~~~~~~~~~~l~~~~------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+-. ....|++......|++|. ..|.+.+||......+....+. ...+....|+. .-+-|++|+
T Consensus 405 gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~aSvv~~~Whp-----kLNQi~~gs 476 (641)
T KOG0772|consen 405 GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---TASVVRCLWHP-----KLNQIFAGS 476 (641)
T ss_pred CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---CceEEEEeecc-----hhhheeeec
Confidence 432 122333333334444443 3456777775543332222211 23334445663 345589999
Q ss_pred CCCeEEEEE
Q 003106 835 GDSSLSSFI 843 (847)
Q Consensus 835 ~DG~V~vW~ 843 (847)
+||+++||-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=188.76 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=163.9
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CceeEEEccCCCCeEEEEEcCC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+...+..|+..+++.+|++||.++|||+.|..|+|+|++. --++++|..|.+.|++++|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4556788999999999999999999999999999999861 1357888899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe---eCC
Q 003106 692 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---VES 766 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---~~~ 766 (847)
...|++|+.|++|++||+.... +..+.| .....|.+|.|+|.|++++ .|..-.++++||+++..|...-. .|.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999997621 112222 2346799999999999555 77778899999999998876654 467
Q ss_pred ceEEEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..|.++.+..... +.+++.+|.|++||.....+ +..++ .+++..+.+..+. .++.+|++.+.|.+|++|++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeee
Confidence 7889998876554 45788999999999653222 22222 2344455554444 37899999999999999999
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
+|
T Consensus 335 ~t 336 (430)
T KOG0640|consen 335 ST 336 (430)
T ss_pred cC
Confidence 76
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=206.66 Aligned_cols=286 Identities=16% Similarity=0.186 Sum_probs=218.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC-----eEEeCCCCch----hhc-ccc-ccccCCCCCceEEe-eecCC----CCCCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN-----QLWDDKDLEL----RAD-MDR-LVEDGSLDDNVESF-LSHDD----TDPRD 614 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~-----~iWD~~~~~~----~~~-~~~-~~~~g~~d~~v~~~-~s~d~----t~~~d 614 (847)
.....+.++..+|||..+++++.. +||+.+.... ... +.. +.....++..|.|+ ++.|+ +|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 344457799999999999998833 5998754321 111 122 22234566677665 77777 78888
Q ss_pred CcEEEEeccC---------------CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC
Q 003106 615 AGGRGMDVSQ---------------GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 615 ~~v~vwd~~~---------------~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h 679 (847)
..|-+|+... -+.|+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+++.+.++++|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 8999999872 0357788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC------CCCeEEEEEecCCCeEEEEEeC---CCcEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH------SASVMSLDFHPNKDDLICSCDG---DGEIRY 750 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------~~~V~sl~fsp~g~~ll~s~s~---Dg~V~i 750 (847)
.+.|..|.|.|-|++||+-++|++|+||++.+ ..+.+.+.++ ...+..+.|+|||.+|....+- -.++.|
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 99999999999999999999999999999876 4444444433 3457889999999966533332 347889
Q ss_pred EECCCCceEEEEeeCCceEEEEEecC------C------------CEEEEEcCCCcEEEEcCCcccceeeecccccCCCC
Q 003106 751 WSINNGSCTRVFKVESFCCWCVNAMN------R------------PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE 812 (847)
Q Consensus 751 WD~~~~~~~~~~~~~~~~v~~~~~~~------~------------~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 812 (847)
.+-.+.++-..|-+|...+.|+.|.+ . .++..++.|+.|.||....... ++..... ....
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-l~vi~~l-f~~S 327 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-LFVIHNL-FNKS 327 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-hhhhhhh-hcCc
Confidence 99988898999999999999988642 1 1677899999999999643322 2222221 2333
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+....|+ + ++..|+++|.||+|.+.+.
T Consensus 328 I~DmsWs----p-dG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 328 IVDMSWS----P-DGFSLFACSLDGTVALIHF 354 (942)
T ss_pred eeeeeEc----C-CCCeEEEEecCCeEEEEEc
Confidence 4455666 3 6788999999999999875
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=196.73 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=185.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..|++|++..+ ....+.++.+..+.|++++|.++++.+++++.|+.+++|+++......+|.+|++.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 7888999999999877 466788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.....+++|+.|.+|++||+.. ..|.+++. ..+.+..|+..+ ..+++|-.|++||+||+++..++.....+. .|
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~v 344 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RV 344 (459)
T ss_pred ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc-ce
Confidence 8877799999999999999998 77777664 234566666652 256699999999999999999999998877 56
Q ss_pred EEEEe-cCCCEEEEEcCCCcEEEEcCCccccee-eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNA-MNRPCLWDKLDAGDIQISDSLFINANI-FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++.. .+...+.+...+..+.++|........ +...+ ......|.-.+.++++.|+++||.||.|+||++-+
T Consensus 345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g-----~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG-----FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc-----cccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 66654 356677777888899999976443322 22222 33344476666677899999999999999999854
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=203.93 Aligned_cols=218 Identities=17% Similarity=0.274 Sum_probs=182.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++++|+++++|+-... .+.....+.+|.+-|.+ ++|-+ ++-+|++|+.|++|.+|......++.+|++|...|.|+.
T Consensus 30 s~sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 6889999999998665 56666778889998888 88886 556799999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
...++. |++||+|.+++||-+. .+...+.+|...|+++.+-|++ .++||+.|.+|++|.- ++++++|.+|..
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 888886 9999999999999875 4666799999999999999987 4569999999999976 789999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+|+.+...+...+.+++.+|.|+.|+.. ...+....++ +..+|++.. ..+...|++++.|++++||+.+
T Consensus 181 ~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~gh------tn~vYsis~-~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGH------TNFVYSISM-ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred heeeeEEecCCCeEeecCCceEEEEecc--Cceeeeeecc------ceEEEEEEe-cCCCCeEEEecCCceEEEeecC
Confidence 9999999999999999999999999963 2222222222 222333432 2257889999999999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=180.03 Aligned_cols=226 Identities=18% Similarity=0.233 Sum_probs=159.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++.|++||+|++.....+.. +....|.++|.|++|+.||..+++|+.|+.+++||+.+++. ..+-.|.++|.++.|-+
T Consensus 46 ~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVP 123 (347)
T ss_pred cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEec
Confidence 34577888888887422222 55678999999999999999999999999999999999855 56778999999999988
Q ss_pred CCC--EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEee-CC
Q 003106 691 SMP--RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKV-ES 766 (847)
Q Consensus 691 ~~~--~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~~-~~ 766 (847)
... .|+|||+|++||+||.|. ...+.++. -.+.|++++.-.. +++.+..|+.|.+|+++++.... .... -.
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~-LPeRvYa~Dv~~p---m~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQ-LPERVYAADVLYP---MAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred CCCcceeEecccccceeecccCC-CCeeeeee-ccceeeehhccCc---eeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 766 799999999999999998 55666654 3467888876543 66677779999999998764221 2221 22
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCcc----cceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFI----NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
..++|++.. +......++-+|.+.+...... +-.+.|+............+-++.+++ ....|+|+++||++.+
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSF 277 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEE
Confidence 335555433 3334467777888777654432 122223322111222112234455666 5788999999999999
Q ss_pred EEc
Q 003106 842 FIA 844 (847)
Q Consensus 842 W~~ 844 (847)
||.
T Consensus 278 WDk 280 (347)
T KOG0647|consen 278 WDK 280 (347)
T ss_pred ecc
Confidence 985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=202.16 Aligned_cols=230 Identities=25% Similarity=0.349 Sum_probs=190.0
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCce-
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGFS- 627 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~~- 627 (847)
....|-|-+++++.+..+ .++|+......+.+.. +++.+-. -..+|+ +++.|.+|++||..--..
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 455677888888776544 7899998887776441 3333322 244444 889999999999653211
Q ss_pred ---e------eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 628 ---F------KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 628 ---~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
- +...++ .-.+.|.|+.+||||++||++--|.+|+||-+++.+....+.||.-+|.|++++||++.|+||
T Consensus 490 ~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred CcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec
Confidence 1 111122 245789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-C
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-R 777 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~ 777 (847)
|.|+.|+||-++- +.|.+.+.+|.+.|++|.|.|. ..+|.+|+.|+.|+-||-...+++..+.+|...|+|++... +
T Consensus 569 SADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 569 SADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG 646 (888)
T ss_pred cCCCceEEecccc-chhhhhhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC
Confidence 9999999999997 8899999999999999999997 45677999999999999999999999999999999998664 4
Q ss_pred CEEEEEcCCCcEEEEcCC
Q 003106 778 PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~ 795 (847)
..+++++.|..|++|+..
T Consensus 647 ~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWERT 664 (888)
T ss_pred CeEEeccCCceeEeeecc
Confidence 588888899999999854
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=183.13 Aligned_cols=224 Identities=16% Similarity=0.164 Sum_probs=167.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~ 687 (847)
++..|..|++|.+... .+...+..|..+|+.+..+|.|+||++++.||+..+.|+.++..+...... .-.+++.+
T Consensus 278 ~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 278 TASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ecCCcceEEeeccccc---cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 6778889999998765 366677899999999999999999999999999999999999987766532 23489999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+|||..|.+|..|+.|+|||+.. ...+..|.+|.+.|..|.|+.+| ++|++++.|+.|++||+|.-+...+|.....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 999999999999999999999998 55789999999999999999886 5777999999999999999888887775543
Q ss_pred -eEEEEEecCCCEEE-EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 -CCWCVNAMNRPCLW-DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 -~v~~~~~~~~~~l~-~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+.++.++....+. .+..+-.|++++.....-.....+.. +....+. +.+.. ...++++++.|..++++.+
T Consensus 433 ~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-~sg~st~----v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-HSGLSTG----VRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-cccccce----eeecc-cceEEeeccchhheEEeec
Confidence 57777777655443 33333334444422211111111111 1111111 11122 4578999999999998864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=171.62 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=199.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~ 622 (847)
.|..+.+-+.+..+|..+.+.+.+ .+|-..+++....++ ++.+.|-+. ...+. +++.|.++++||+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~------GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD------GHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec------CCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 356677889999999999887766 688887776554432 233333222 11121 8899999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECC-------CCceeEEEccCCCCeEEEEEcC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~-------~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++| +.+.+++ -...|..+.|+.+|++++.+.++ +.|.++|++ ..++...+..+.+.|+.+-|.|
T Consensus 82 ~tG---k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 82 ETG---KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred CCC---cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 998 5666655 46789999999999998887653 679999987 4566788888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
.++.|++|..||.|.+||++++...+.....|...|+.|.|+++.. ++++++.|.+-++||+++-++++++..... |.
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~P-vN 235 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERP-VN 235 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeeccc-cc
Confidence 9999999999999999999996666777788999999999999977 556999999999999999999999986544 44
Q ss_pred EEEecC--CCEEEEEcCC-CcEEE-------EcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 771 CVNAMN--RPCLWDKLDA-GDIQI-------SDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 771 ~~~~~~--~~~l~~~~~~-g~i~i-------~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+.+..+ +..+..+..+ ..|.. |+.++.+......++...+.+ ..+-.++++| ++...++|+.||.||
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--GPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--GPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc--cCcceeEECC-CCcccccCCCCceEE
Confidence 444332 2222222211 11221 223332222222222222211 1223455556 788899999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+...
T Consensus 313 ~h~F 316 (327)
T KOG0643|consen 313 LHHF 316 (327)
T ss_pred EEEe
Confidence 8754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=184.02 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------CC--------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT------DT-------------- 669 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~------~~-------------- 669 (847)
+++.|.+.++|.++++ +++.++.+|.+.|+||+|++.+.++++++.|++..||.. ..
T Consensus 165 tASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 165 TASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 5677899999999987 799999999999999999999999999999999999951 00
Q ss_pred --------------------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 670 --------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 670 --------------------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++..|++|...|.+..|-..|..++++++|.+..+||+++ +..+..+.||....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt-ge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET-GEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc-CceeccccCcchhcccc
Confidence 013455789999999999999999999999999999999999 89999999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWY 808 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 808 (847)
+-+|..+ |+++.+.|.+.++||++.. ..+.+|.+|...|.++.|..+..+.+++++..|++||.......+-....-.
T Consensus 321 stHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 321 STHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred ccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC
Confidence 9999954 8889999999999999954 4678999999999999999999999999999999999765443322111100
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
. +-.++. .....+|+.--.+..|++||+.
T Consensus 400 ~-------~NRvav-s~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 400 P-------ANRVAV-SKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred c-------cceeEe-ecCCceEEeccCCceEEEEecC
Confidence 0 001111 1134467777777889999873
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-21 Score=211.37 Aligned_cols=181 Identities=20% Similarity=0.279 Sum_probs=161.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..+-+|.+.+. ..+..+++|..+|.||.|+.+..+|++|+.||+|+|||++..+.++++.+|...|.+|.|+
T Consensus 45 ~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 45 TGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH 121 (825)
T ss_pred cCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec
Confidence 5667777778887754 4555689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|-+.++++|+.|+.+++||++. ..|...+.+|...|.++.|+|+|. ++++++.|.+|+|||+..|+.+..|+.|...+
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV 199 (825)
T ss_pred cceEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccc
Confidence 9999999999999999999997 678899999999999999999988 56699999999999999999999999999988
Q ss_pred EEEEecCCCE-EEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNRPC-LWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~~~-l~~~~~~g~i~i~d~~ 795 (847)
..+.+.+... +..++.++.+.+||..
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccc
Confidence 8888765444 4567888889999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=198.54 Aligned_cols=184 Identities=10% Similarity=0.150 Sum_probs=143.5
Q ss_pred CCCCCCcEEEEeccCCce-----eeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 610 TDPRDAGGRGMDVSQGFS-----FKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
+++.|++|++||+.++.. ...+..+.+|...|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|
T Consensus 92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V 170 (568)
T PTZ00420 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKL 170 (568)
T ss_pred EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcE
Confidence 788999999999976421 1244568899999999999998875 5789999999999999998877775 66789
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE-----EEecCCCeEEEEEeCC----CcEEEEECC
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL-----DFHPNKDDLICSCDGD----GEIRYWSIN 754 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl-----~fsp~g~~ll~s~s~D----g~V~iWD~~ 754 (847)
.+++|+++|.+|++++.|++|+|||+++ +..+.++.+|.+.+.+. .|++++.+++ +++.| +.|+|||++
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECC
Confidence 9999999999999999999999999998 77888899998765433 3457777555 65555 379999999
Q ss_pred C-CceEEEEeeCC--ceEE-EEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 755 N-GSCTRVFKVES--FCCW-CVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 755 ~-~~~~~~~~~~~--~~v~-~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+ ++++..+..+. ..+. .........+.++..++.|++|+...
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 5 56666654433 2222 22333456677889999999999653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=189.90 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+......+.|.++...+++++.+ ++|++...+.. ....+. |+......+-+.++. ..+.|+.+++|++.
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLa--Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLA--GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-hhhhhh--ccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 344556788999997778888777 67999776521 111111 111111111222222 67889999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. ....++.+|++.|+++.|.-+...+++|+.|.+|++||+.+..+.+++. ....+.+|+.+ ...+++|..|++
T Consensus 250 ~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 250 SL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccc
Confidence 55 7888999999999999999877779999999999999999988877764 23345566555 456888999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----ceEEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----FCCWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----~~v~~~~~~~~~ 778 (847)
||+||++. ..++.....+. .|++|..++++..++ +++.|.++.+.|+++.+....|.... .+...+...+..
T Consensus 324 vRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 324 VRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eEEEeccC-CceeeEeecCc-ceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 99999998 67777777665 899999999998777 77999999999999999888887543 333444455677
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCC-CccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSD-EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++.+|+.+|.|+||+............ .+.. .+++..|+. .+..+++++.++.+++|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~-----sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNP-----SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcC-----CCchhhcccCCcceEecC
Confidence 889999999999999765443333222 2222 567777873 467799999999999994
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=187.42 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=168.2
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.+.+|.+.+...+. ..---.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 67788887642222 122245789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCC--------CCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 696 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~--------~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+||+.||.|++|++.+ .-..++.|..|.-.|+.+...+.|. -.|+|++.|.+|++||+..|..+.++....
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998743 1346788899999999998876532 256699999999999999999888776555
Q ss_pred ceEEEEEec-CCCEEEEEcCCCcEEEEcCCccc---------------ceeeecccccCCCCccccccccccccCCCcEE
Q 003106 767 FCCWCVNAM-NRPCLWDKLDAGDIQISDSLFIN---------------ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 767 ~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
. +.++..+ .+..+|.|.++|.|.+.+..... ..+....++.+...+++... ..++.+|
T Consensus 219 s-i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-----s~DgtlL 292 (476)
T KOG0646|consen 219 S-IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-----STDGTLL 292 (476)
T ss_pred c-ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-----ecCccEE
Confidence 4 4444444 56688999999999887632211 11111112222222332222 2378999
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||.|+|||+..
T Consensus 293 lSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYS 308 (476)
T ss_pred EeeCCCCCEEEEecch
Confidence 9999999999999853
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=193.90 Aligned_cols=274 Identities=19% Similarity=0.166 Sum_probs=195.1
Q ss_pred eEEEecCCCeEee---cCCCeEEeCCCCchhhccccccccCCCCCceEEee-------ec-----------CCCCCCCCc
Q 003106 558 LMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFL-------SH-----------DDTDPRDAG 616 (847)
Q Consensus 558 ~v~~s~dG~~~~~---~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~-------s~-----------d~t~~~d~~ 616 (847)
.+.|.+...++.. +.+..+||+++.........+++. ..++|. .+ -.+++.|++
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH-----S~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH-----SACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec-----cceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 4556655555433 233478999987665544433321 111121 01 117889999
Q ss_pred EEEEeccCCceeeE----------------------------------eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 003106 617 GRGMDVSQGFSFKE----------------------------------ANSVRASTSKVICCHFSSDGKLLATGGHDKKA 662 (847)
Q Consensus 617 v~vwd~~~~~~~~~----------------------------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 662 (847)
||+||+..+..-.. ..........|+|++++|+|.+||+|..-|+|
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence 99999886311000 00111234579999999999999999999999
Q ss_pred EEEECCCCceeEEEccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCC----
Q 003106 663 VLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK---- 735 (847)
Q Consensus 663 ~vwd~~~~~~~~~l~~h~~~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g---- 735 (847)
+|||+...+....++.|...|.|+.|+.. .++||+++.|.-|+|||+......+.++.+|.+.|++|.|.-.|
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 99999999998999999999999999863 46889999999999999987666777888888888888774322
Q ss_pred --------------------------------------------CeEEEEEeCCCcEEEEECCCCceEEEEeeC---Cce
Q 003106 736 --------------------------------------------DDLICSCDGDGEIRYWSINNGSCTRVFKVE---SFC 768 (847)
Q Consensus 736 --------------------------------------------~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---~~~ 768 (847)
..++++++.|..|+|||+.+++.++.|++. .+.
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 136679999999999999999999999864 233
Q ss_pred -EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 769 -CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 769 -v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|........+++.+.+.++.+.++|..... .....+.++..++...|..+| ..|++.++||.|.||++
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~nDC-----kHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFLNDC-----KHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeecccc-----hhheeecCCceEEEEEC
Confidence 333333456788889999999999844221 112223345666666666444 34999999999999987
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=186.97 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=177.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEE------------------eecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANS------------------VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK 671 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~------------------l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~ 671 (847)
+..+-.|.|||+.--....+..+ ..+|++.|.+|+|+.. ...||+||.|.+|++||+.+++
T Consensus 198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~ 277 (463)
T KOG0270|consen 198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK 277 (463)
T ss_pred eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence 44566788898764322222222 2379999999999884 4689999999999999999999
Q ss_pred eeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 672 SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 672 ~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+..++..|.+.|.++.|+|. ..+|++|+.|++|++.|+|.....-..++ ..+.|-.+.|++...+.++++..||+|+-
T Consensus 278 p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 278 PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEe
Confidence 99999999999999999997 55889999999999999996443333333 46789999999999998989999999999
Q ss_pred EECCCC-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCC
Q 003106 751 WSINNG-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRE 827 (847)
Q Consensus 751 WD~~~~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 827 (847)
+|+|.. +++.+++.|...|.++++. ....+.+++.++.+.+|+....+....... .....+..+..+.+...
T Consensus 357 ~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-----~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 357 FDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-----SFKLGRLHCFALDPDVA 431 (463)
T ss_pred eecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-----cccccceeecccCCCcc
Confidence 999985 8999999999999888765 345677899999999998554433222111 11112233344445455
Q ss_pred cEEEEEeCCCeEEEEEccCC
Q 003106 828 CCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 828 ~~l~sGs~DG~V~vW~~gty 847 (847)
.+++.|+..+.++||++-++
T Consensus 432 ~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 432 FTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eEEEecCccceEEEeecccC
Confidence 77999999999999998654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=188.85 Aligned_cols=224 Identities=15% Similarity=0.229 Sum_probs=165.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~ 685 (847)
..+..++|+|||+.....-.++..+. .....|++|.+.|||+.|++|++-.+|.|||+... .+...+..-.-...+
T Consensus 435 yTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyA 514 (705)
T KOG0639|consen 435 YTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 514 (705)
T ss_pred EecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhh
Confidence 45677899999998653333444443 24567999999999999999999999999999854 344445444456788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.+||.+.+++|+.||.|+|||+.+ ...++.|.||.+.+.||+.+++|.+|. ||+.|++||.||+++++.+.....
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF- 591 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDF- 591 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhh-
Confidence 99999999999999999999999998 888999999999999999999999877 999999999999999876544332
Q ss_pred CceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 766 SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 766 ~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...|.++... ...++..+.+++.+.+........ +. .....+.+.++.+..| +.++++.+.|..+.+|..
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yq-------lhlheScVLSlKFa~c-GkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQ-------LHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccc-ee-------ecccccEEEEEEeccc-CceeeecCchhhhhhccC
Confidence 2234444433 456777888888877765332111 00 1111223344445554 677888888888888875
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
-
T Consensus 663 P 663 (705)
T KOG0639|consen 663 P 663 (705)
T ss_pred c
Confidence 3
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=192.04 Aligned_cols=235 Identities=17% Similarity=0.272 Sum_probs=192.3
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
...++++.|+++|.+++++..+ .|||+.+.+....+... +...|.+...... ++.+++.|..+|+....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-----h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-----HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-----cCceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 5577899999999999887655 89999888776654431 2222322211122 78899999999998763
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC-CCEEEEEe--CCCc
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSS--FDKT 703 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~-~~~Lasgs--~Dg~ 703 (847)
.... ++.+|...|+.++|++|+++||+|+.|+.|.|||.....++..+..|...|.+++|+|- ...||+|+ .|++
T Consensus 292 ~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 292 HVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 3222 58899999999999999999999999999999999888999999999999999999996 55888876 5999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLW 781 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 781 (847)
|++||+.+ +..+.... ..+.|++|.|++..+.++.+.+ .++.|.||+..+.+.+..+.+|...|..+...++ ..+.
T Consensus 370 i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 370 IKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 99999998 66666654 4578999999999887776655 4678999999999999999999999988887655 7888
Q ss_pred EEcCCCcEEEEcCCc
Q 003106 782 DKLDAGDIQISDSLF 796 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~ 796 (847)
++..|.++++|+...
T Consensus 448 t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADETLRFWNLFD 462 (484)
T ss_pred EecccCcEEeccccC
Confidence 999999999998654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=169.94 Aligned_cols=205 Identities=16% Similarity=0.172 Sum_probs=163.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
.+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+|+.+.++.+|.+.|+||+.+.+.++|++|+.|.+++|||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe----CCCcEEEEECC-------CCceEEEEeeCCceEEE-EEecCCCEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSIN-------NGSCTRVFKVESFCCWC-VNAMNRPCL 780 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s----~Dg~V~iWD~~-------~~~~~~~~~~~~~~v~~-~~~~~~~~l 780 (847)
++++..++ ....|..+.|+.+|..++++.. ..+.|.++|++ ..+++..+..+...+.. +...-...+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 88888886 5678999999999886664432 24689999998 34566666665555444 444566788
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.++|.|.+||...... +......+...++. +...+ +..++++||.|.+.++||+.+
T Consensus 163 i~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind----~q~s~-d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKE--LVDSDEEHSSKIND----LQFSR-DRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EEecCCCcEEEEEcccCce--eeechhhhcccccc----ccccC-CcceEEecccCccceeeeccc
Confidence 9999999999999764322 22222222223322 22223 678999999999999999865
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=167.21 Aligned_cols=274 Identities=15% Similarity=0.217 Sum_probs=201.5
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
..+.+++|..||+.++.++.+ ++|+++...+..+.......++. ..++.+-.+.+ ++..|.+|++||+..+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv-dql~w~~~~~d~~atas~dk~ir~wd~r~~-- 97 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV-DQLCWDPKHPDLFATASGDKTIRIWDIRSG-- 97 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcch-hhheeCCCCCcceEEecCCceEEEEEeccC--
Confidence 346789999999999887765 88999887655543332222222 22333333333 7889999999999987
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
++...+....+. .-+.|+|+|.+++.++.|..|.+.|.++.+.+...+ ....+..++|+-++++|+.....|+|.|.
T Consensus 98 -k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 98 -KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred -cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 455554433333 457899999999999999999999999888776653 45568889999888888888888999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDA 786 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~ 786 (847)
.... -+.+..++.|...+.||.|+|+|+ +|++|+.|..|.+||+..--|++.|....-.|+.++|..+ ..+.+++++
T Consensus 175 syps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 175 SYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 9986 778999999999999999999998 5679999999999999999999999999999999988754 566778888
Q ss_pred CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC---------CeEEEEEc
Q 003106 787 GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD---------SSLSSFIA 844 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D---------G~V~vW~~ 844 (847)
..|.|-+.......-... .....+.++++| ...+|+-++.| |+|++|=+
T Consensus 253 h~IDIA~vetGd~~~eI~--------~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP--------CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ceEEeEecccCCeEEEee--------ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 888776644322211111 112233344455 45556555544 57777643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-20 Score=203.71 Aligned_cols=171 Identities=19% Similarity=0.334 Sum_probs=157.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..+|+|++||++.+ +.++++.+|...|..+.|+|-+.|+++|+.|+.+++||++...+.+.+.+|...|.+++|+
T Consensus 87 agsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls 163 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS 163 (825)
T ss_pred ccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec
Confidence 7888999999999976 6777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|+|+++++++.|.+|+|||+.. ++.+.+|++|.+.|.++.|+|. +.++++|+.|++|++||+++.+.+...+.....|
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v 241 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV 241 (825)
T ss_pred CCCceeeccCCcceeeeecccc-cccccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence 9999999999999999999998 8889999999999999999998 5688999999999999999999998888888889
Q ss_pred EEEEecCCCEEEEEcC
Q 003106 770 WCVNAMNRPCLWDKLD 785 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~ 785 (847)
.|..|....+.+....
T Consensus 242 ~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeeeecCCceeeecCc
Confidence 9998887766554433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=171.69 Aligned_cols=202 Identities=22% Similarity=0.291 Sum_probs=150.4
Q ss_pred CCCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhccccc------c---ccCCCCC--ceEEeeecCC----CC
Q 003106 551 SGTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRL------V---EDGSLDD--NVESFLSHDD----TD 611 (847)
Q Consensus 551 ~~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~------~---~~g~~d~--~v~~~~s~d~----t~ 611 (847)
.|+.++.++.+.+ .|++++.++.+ -+||+....-.+.-.-+ + ....+.. .-..|+..|. ++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3444555665554 58888887766 68999765422211100 0 0111111 2234777776 78
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+.|.+++|||+.+- .+...|+ -.+.|++-+++| .-.+||+|..|-.|++.|+.+|..-+++.+|.+.|.+|.|
T Consensus 121 SFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 89999999999864 4444443 456788888888 3458889999999999999999999999999999999999
Q ss_pred cCCCCE-EEEEeCCCcEEEEECCCCCceEEEec--------------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 689 SPSMPR-LATSSFDKTVRVWDADNPGYSLRTFM--------------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 689 sp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~--------------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+|..++ |++|+.||.||+||++....++.++. .|.+.|.+++|..++.+++ +++.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~-~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA-SCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh-hccCccceEEeec
Confidence 999885 58999999999999997544544443 4678899999999988654 8889999999999
Q ss_pred CCCc
Q 003106 754 NNGS 757 (847)
Q Consensus 754 ~~~~ 757 (847)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 8875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=182.72 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=176.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..+.++|..++ ..+.+++||...|+++.|+++...+++++.|..|+||.+........+..|..+|+.+..+
T Consensus 236 TGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred ecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeec
Confidence 4556666677777655 6778899999999999999999999999999999999998777777888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|.|+||++++.||++.+.|+++ +..+..... ..-.+++..|||||- +|.+|..||.|+|||++++..+..|.+|..
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccC-CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999999999999999999998 555554432 234589999999975 888999999999999999999999999999
Q ss_pred eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 ~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.|..+.|.. +.++...++++.|++||.+... .+..+.......+....++ . .+.+|+.++.|=.|++++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD----~-SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFD----Q-SGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEc----C-CCCeEEeecceeEEEEEe
Confidence 999998864 5566788888889999966332 1222111111122333333 2 477888888887777666
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=177.96 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=173.1
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+..-+.+|.+|++.|+.+.+..+..+-|+++.|-+.+|||.-++..+..| .|...|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhh
Confidence 44678899999999999999999999999999999999999999999988 58889999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCC
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDA 786 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~ 786 (847)
||+..+......+.+|.+.|..+.|.....++| +.+.|++||+||.+++..+..+.... .|.++....+..+.+....
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEecC
Confidence 999998888999999999999999998877776 77889999999999999998887544 4677777888888899999
Q ss_pred CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 787 GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 787 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.|..||...... + .....+..+-+...++ +..++++|+.|+.++.||..|
T Consensus 205 ssV~Fwdaksf~~--l------Ks~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 205 SSVKFWDAKSFGL--L------KSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred ceeEEeccccccc--e------eeccCccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 9999999553221 1 1111222222222234 568999999999999998654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=201.31 Aligned_cols=154 Identities=24% Similarity=0.384 Sum_probs=132.7
Q ss_pred CCC--CCCcEEEEeccCCc---------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------
Q 003106 610 TDP--RDAGGRGMDVSQGF---------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--------- 669 (847)
Q Consensus 610 t~~--~d~~v~vwd~~~~~---------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--------- 669 (847)
+++ .|+.+++|+...-. .-+.+.++..|.+.|+|+.|++||++||+|++|+.|.||+...
T Consensus 30 TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs 109 (942)
T KOG0973|consen 30 TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS 109 (942)
T ss_pred cCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc
Confidence 455 67777788855321 1345677889999999999999999999999999999998662
Q ss_pred ---------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 670 ---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 670 ---------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.+.+..+.+|...|.+|+|+|++.+|++++.|++|.|||.++ ...+.++.+|.+.|..|.|+|-|+ +|+
T Consensus 110 ~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~H~s~VKGvs~DP~Gk-y~A 187 (942)
T KOG0973|consen 110 TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRGHQSLVKGVSWDPIGK-YFA 187 (942)
T ss_pred cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeecccccccceEECCccC-eee
Confidence 246778899999999999999999999999999999999999 589999999999999999999998 667
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeC
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
+-+.|++|+||++.+..+.+.+..+
T Consensus 188 SqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 188 SQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred eecCCceEEEEEcccceeeEeeccc
Confidence 9999999999998887777776644
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=176.38 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=158.6
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC--EEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~--~Lasgs~Dg~V 704 (847)
++.++..+.+|.+.|+|++++ +.++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+... +|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 567788899999999999985 89999999999999999999999999999999999999999765 89999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
.+|++.. ..++.++++|.+.|+.|+.||.++ |.++.+.|+.++.||+-.|+.-..++....... +.+.+....|...
T Consensus 110 ~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~-v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 110 IIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL-VSWSPQGDHFVVS 186 (362)
T ss_pred EEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCccee-eEEcCCCCEEEEE
Confidence 9999998 788999999999999999999987 667999999999999999886665554332222 4445555544555
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....|.+|...... ++..... .....+..| .++..+++|..|+.|++||..
T Consensus 187 ~~~~i~i~q~d~A~--v~~~i~~--~~r~l~~~~------l~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 187 GRNKIDIYQLDNAS--VFREIEN--PKRILCATF------LDGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred eccEEEEEecccHh--Hhhhhhc--cccceeeee------cCCceEEEecCCceEEEeccC
Confidence 55567777644221 1211111 011111112 257889999999999999974
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=179.32 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=192.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhcc-cc----------ccc--cCCCCCceEEeeecCC----
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADM-DR----------LVE--DGSLDDNVESFLSHDD---- 609 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~-~~----------~~~--~g~~d~~v~~~~s~d~---- 609 (847)
..|-.+..++++++|+++.+..+.+ .-|++.+++....+ .+ +.. .+.....+++..+.|+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3455677899999999988887655 45998887643111 11 111 1344556777788888
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|..|.|||..+. +.+.++++|.+.|.+++|-.....|++++.|++|+||+++....+.++.+|.+.|.+|...
T Consensus 219 tgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred ecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 8999999999999966 6778899999999999999888899999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---- 765 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---- 765 (847)
.-.+.+.+|+.|++++||++. ......|.+|.+.+-|++|-.+. .|++|+.||.|.+|++-+.+++.+....
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred cccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeecccccc
Confidence 777777777799999999995 46667788999999999998773 4569999999999999999988877532
Q ss_pred --------CceEEEEEec-CCCEEEEEcCCCcEEEEcCC
Q 003106 766 --------SFCCWCVNAM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 766 --------~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+++.. ....+.+++.+|+|++|-..
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 1266666654 45677788899999999854
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=170.17 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=195.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~ 622 (847)
.|+..++.++|+.||+++++...+ +|||+++.+..+. ..+-....+|....+.+++|. ...+..++++|-+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 556678899999999999886554 8999998765443 111122233444444455554 2335566777765
Q ss_pred cCCce------eeEeE---EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 623 SQGFS------FKEAN---SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 623 ~~~~~------~~~~~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
.+... +..+. .-+-|.-.|..+-....+++|++++.|.+|.|||++ |+.+..+......-+..+.+|+|+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCc
Confidence 54211 11111 223566778888888889999999999999999999 899888877777778899999999
Q ss_pred EEEEEeCCCcEEEEECCCC--C-----ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----C---ceE
Q 003106 694 RLATSSFDKTVRVWDADNP--G-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----G---SCT 759 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~--~-----~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~----~---~~~ 759 (847)
+|++++.--.|+||.+--. + ..+..++||.+.|..++|+++.+++ ++.+.||++||||+.- + +.+
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee-EEEecCCcEEEeeccceEecCCCchHh
Confidence 9999999889999987321 1 2356679999999999999998865 5999999999999852 1 222
Q ss_pred EEEe----eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC
Q 003106 760 RVFK----VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 760 ~~~~----~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
+++. ........+...+...+++.+.+..+.++.... ...+..+...+...+....|+. ++.++++ |+
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~--g~~~~~~e~~h~~~Is~is~~~-----~g~~~at-cG 392 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED--GKDYPELEDIHSTTISSISYSS-----DGKYIAT-CG 392 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc--CccchhHHHhhcCceeeEEecC-----CCcEEee-ec
Confidence 2221 112222345556667777888888888887664 3334444455677777777772 4555555 56
Q ss_pred CCeEEEEE
Q 003106 836 DSSLSSFI 843 (847)
Q Consensus 836 DG~V~vW~ 843 (847)
|..|+|+.
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 77888865
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=179.92 Aligned_cols=145 Identities=23% Similarity=0.392 Sum_probs=124.2
Q ss_pred CCCCCCcEEEEeccCCceeeE-eEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKE-ANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~-~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~ 684 (847)
++.-.+.|++|...++ .|+. ...+.+|+..|-+|+|+|. ...|++||.||+|+|||++.+ .++ ..+.|.+.|+
T Consensus 229 sGDc~~~I~lw~~~~g-~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTG-SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccC-ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCcee
Confidence 4445677899999887 5554 3456789999999999994 468999999999999999976 333 3479999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC--CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|.|+..-.+||+|++||+++|||+|. .+..+..|+-|..+|++|.|+|....+|++++.|..|.|||+...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999988999999999999999986 246688999999999999999998888889999999999999754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=179.10 Aligned_cols=209 Identities=19% Similarity=0.266 Sum_probs=156.9
Q ss_pred eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCC-CEEEEEe
Q 003106 629 KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSS 699 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs 699 (847)
+..-.+.+|++.|.+++|+| +...||+||+|.+|.||.+... +++..|.+|...|--|.|+|.. +.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34445789999999999999 6789999999999999998642 4577889999999999999984 5789999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc--eEEEEEecCC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF--CCWCVNAMNR 777 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~--~v~~~~~~~~ 777 (847)
.|.+|.|||+.+ ++.+.++. |.+.|++++|+.+|. +|++.+.|..|||||.++++.+..-.+|.+ ....+...+.
T Consensus 152 ~Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999 77777776 999999999999988 667999999999999999999888766654 2344443333
Q ss_pred CEEEEE---cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDK---LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~---~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+-++ .++..+.+||.......+... ..-.+..+....|+ +...-+.++|-+|+.||+|++.
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elDtSnGvl~PFyD----~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELDTSNGVLLPFYD----PDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeE-EeccCCceEEeeec----CCCCEEEEEecCCcceEEEEec
Confidence 332222 345568889865444432211 11123333344444 3233457788899999999873
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=197.17 Aligned_cols=178 Identities=19% Similarity=0.306 Sum_probs=152.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||++.. +...++.+....|++|.|+| .+.+|+++.+.|.|.+||++ ..++...+.+|.++|.|+.
T Consensus 151 SGSQDg~vK~~DlR~~---~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSK---KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred ecCCCceEEEEeeecc---cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 7999999999999866 56677788899999999999 78899999999999999998 5677788899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCC-ceEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
|+|++.+||||+.|+.|+|||..+.. ..+.++ ....+|.+|.|-|...+.|++|+ .|-.|+|||++.. -+..+|.
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee
Confidence 99999999999999999999998632 223333 24568999999999999998887 4789999999865 4678899
Q ss_pred eCCceEEEEEecC--CCEEEEEcCCCcEEE
Q 003106 764 VESFCCWCVNAMN--RPCLWDKLDAGDIQI 791 (847)
Q Consensus 764 ~~~~~v~~~~~~~--~~~l~~~~~~g~i~i 791 (847)
.|...+..+++.. ...+|+++.++.+..
T Consensus 307 eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 307 EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccCccccceeccCCCceeeEeecCccHHHH
Confidence 9999988888765 778999999987654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=169.77 Aligned_cols=166 Identities=22% Similarity=0.287 Sum_probs=137.8
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC--CCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~--Dg~V~ 705 (847)
+++.+.+..-.+.|++|.|+.+|.+|++++.|-+|+|||+.+++.++++..+...|..++|....+.++.++. |.+||
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4555666667899999999999999999999999999999999999999988889999999877777766665 99999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc-
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL- 784 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~- 784 (847)
+.++.+ .+.++.|.||...|.+|+.+|-++ .+++++.|++||+||+|..+|...+......+. +++....+++..
T Consensus 84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~--AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA--AFDPEGLIFALAN 159 (311)
T ss_pred EEEeec-CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcce--eECCCCcEEEEec
Confidence 999998 788999999999999999999986 555999999999999999999888876665544 344555554444
Q ss_pred CCCcEEEEcCCcc
Q 003106 785 DAGDIQISDSLFI 797 (847)
Q Consensus 785 ~~g~i~i~d~~~~ 797 (847)
....|.+||.+..
T Consensus 160 ~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 160 GSELIKLYDLRSF 172 (311)
T ss_pred CCCeEEEEEeccc
Confidence 3447888875443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-18 Score=174.57 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=172.8
Q ss_pred CCCCcEEEEeccCC-------------ceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee---E
Q 003106 612 PRDAGGRGMDVSQG-------------FSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSK---T 674 (847)
Q Consensus 612 ~~d~~v~vwd~~~~-------------~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~---~ 674 (847)
...|.|.|||+... ..++++.++.+|...=+.|+||| ....|++|..-+.|++|...++.-. .
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 45678899997532 24678889999999999999999 2335888888899999998876432 2
Q ss_pred EEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 675 NLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
-|.+|+..|.+|.|+|.. ..|++||.||+|+|||+|.. .+.....+.|.+.|+.|.|+.+-. +|++|+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEE
Confidence 366899999999999975 47899999999999999984 222333388999999999999877 889999999999999
Q ss_pred CCC---CceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc----eee-----------ecccccCCCC
Q 003106 753 INN---GSCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA----NIF-----------CGLGWYGSDE 812 (847)
Q Consensus 753 ~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~----~~~-----------~~~~~~~~~~ 812 (847)
+|. +..+..|+.|...|+|+.+. ....+.++..+..|.+||...... ... .-+.+.+-..
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke 410 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE 410 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence 986 56889999999999999876 456788888999999999432211 000 1111223334
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+....|+ +-...+|++-+.|| +.||+.
T Consensus 411 ~KevhWH----~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 411 VKEVHWH----RQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhhheec----cCCCCeEEEecccc-eeEEEe
Confidence 4444444 44567899999998 566654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=167.90 Aligned_cols=222 Identities=18% Similarity=0.201 Sum_probs=157.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.||++++||+... .+.....|..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+-.|...|.||.+++..
T Consensus 33 WDgslrlYdv~~~----~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~ 106 (323)
T KOG1036|consen 33 WDGSLRLYDVPAN----SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV 106 (323)
T ss_pred ccCcEEEEeccch----hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC
Confidence 4777888888765 2222234899999999985 678999999999999999987664 455799999999999988
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCCW 770 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v~ 770 (847)
..+++|++|++|++||.+. ...+.++.. ...|.+++...+ .|+.|+.|..|.+||+++........ .-...++
T Consensus 107 ~~vIsgsWD~~ik~wD~R~-~~~~~~~d~-~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR 181 (323)
T KOG1036|consen 107 GCVISGSWDKTIKFWDPRN-KVVVGTFDQ-GKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTR 181 (323)
T ss_pred CeEEEcccCccEEEEeccc-ccccccccc-CceEEEEeccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEE
Confidence 8999999999999999997 455555543 347988887744 44577779999999999865433222 1223455
Q ss_pred EEEec-CCCEEEEEcCCCcEEE--EcCC----cccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 771 CVNAM-NRPCLWDKLDAGDIQI--SDSL----FINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 771 ~~~~~-~~~~l~~~~~~g~i~i--~d~~----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|+... +..-++.++-+|.|.+ +|.. .....+.|+............+-.++++++ ...|+||+.||.|.+||
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEcc
Confidence 55543 3445566777777665 3322 122233344333344444444556667775 77899999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
..+
T Consensus 261 ~~~ 263 (323)
T KOG1036|consen 261 LFN 263 (323)
T ss_pred Ccc
Confidence 864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=155.40 Aligned_cols=285 Identities=16% Similarity=0.169 Sum_probs=200.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEe---------CCCCchhhccc---cccccCCCCCceE-EeeecCC----CCCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWD---------DKDLELRADMD---RLVEDGSLDDNVE-SFLSHDD----TDPR 613 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD---------~~~~~~~~~~~---~~~~~g~~d~~v~-~~~s~d~----t~~~ 613 (847)
..+..+..+.|.|.|...+.++..+-+. ++.+...+... .+.....+.+.+- ..+++++ +++.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 3445678899999998766665553322 22111111111 1112222333333 3345555 8899
Q ss_pred CCcEEEEeccCC--ceeeEeEEeecCCCCEEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCceeEEEccCCCCeEEE
Q 003106 614 DAGGRGMDVSQG--FSFKEANSVRASTSKVICCHFSSD----GKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~--~~~~~~~~l~~h~~~V~~l~fspd----g~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v 686 (847)
|++|++...... ........+.-|.+.|++++|-.+ +.+|++++ .|.+|++-|..++.....+.+|++.|.++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 999998776543 112233456779999999999763 45777765 47788888999999999999999999987
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc--C-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++-++-.|++|+.|.+||+||++- ..++.++.. | .+.|.+|+..|.|+ +|++|-.|....+||++.++.+
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCcee
Confidence 455688999999999999999998 667776632 2 36799999999987 7889999999999999999999
Q ss_pred EEEeeCCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcc--cceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 760 RVFKVESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFI--NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
..|..|...|.|+.|.... ++.+++.+..|++.|.... +.......+ .+.+......|. + .+-.|++.+.|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh----~-~d~sfisssad 340 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWH----P-QDFSFISSSAD 340 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE-eccCceEEEEec----C-ccceeeeccCc
Confidence 9999999999999988654 5678888888998884321 111111111 122333333455 3 34558899999
Q ss_pred CeEEEEEc
Q 003106 837 SSLSSFIA 844 (847)
Q Consensus 837 G~V~vW~~ 844 (847)
.++.+|.+
T Consensus 341 kt~tlwa~ 348 (350)
T KOG0641|consen 341 KTATLWAL 348 (350)
T ss_pred ceEEEecc
Confidence 99999975
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=181.51 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=164.9
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.....+++|+..|.++++.|.|.+|++|+.|-+|++||+... +..+.+. .....|.++.|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 345568899999999999999999999999999999998632 2222222 34557999999999999999998999
Q ss_pred EEEEECCCCCceE------------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEee-----C
Q 003106 704 VRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKV-----E 765 (847)
Q Consensus 704 V~iWD~~~~~~~~------------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~-----~ 765 (847)
++|+|-+. ...+ ...+||...++|.+|+|+.+..|+||+.||++||||+...+ -+.+|+. .
T Consensus 238 akl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 238 AKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 99999874 3322 23368999999999999998889999999999999998754 3334432 2
Q ss_pred CceEEEEEec-CCCEEEEEcCCCcEEEEcC--CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 766 SFCCWCVNAM-NRPCLWDKLDAGDIQISDS--LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 766 ~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
...+..+.+. ....+.+++.+|.|.+|+. .+.+..+.....+.....++++.|+ .++++|++-+.|+++++|
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeee
Confidence 2344445544 4556889999999999993 4455556666666666778877666 378999999999999999
Q ss_pred EccCC
Q 003106 843 IAGTY 847 (847)
Q Consensus 843 ~~gty 847 (847)
|+..|
T Consensus 392 DLrq~ 396 (641)
T KOG0772|consen 392 DLRQF 396 (641)
T ss_pred ecccc
Confidence 98643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=162.30 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=148.8
Q ss_pred CCCCCCcEEEEeccCCc-------eeeEeE-----EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 003106 610 TDPRDAGGRGMDVSQGF-------SFKEAN-----SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~-------~~~~~~-----~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l 676 (847)
+++.|+.|.+||+.... ..+.+. .-.+|+-.|.++.|-| |...|.+++.|++++|||..+.+....|
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 57788888999987642 112222 1246888999999999 7789999999999999999999888888
Q ss_pred ccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 677 EEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+ ..+.|++-+++|- ..+||+|..|-.|++.|+.. +.+..++.||.+.|.+|.|+|..+++|++|+.||.||+||+
T Consensus 141 ~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 141 K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDI 218 (397)
T ss_pred e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEe
Confidence 5 4567888889884 33678888899999999998 88899999999999999999999999999999999999999
Q ss_pred CCC-ceEEEEeeC--------------CceEEEEEec-CCCEEEEEcCCCcEEEEcCCc
Q 003106 754 NNG-SCTRVFKVE--------------SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 754 ~~~-~~~~~~~~~--------------~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.- .|..++..| ...+..+++. ....+|....+..+++|+...
T Consensus 219 Rrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 219 RRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 865 566666543 3445555543 455788889999999998553
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=173.13 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=171.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.||.|++||+... .+..++++|.+.|..|++.- ..+++++.|++|+.|.++. .+++++.+ ...+..|+-+
T Consensus 84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 7889999999999865 67889999999999999986 7899999999999999874 46677643 4567888888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce-
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC- 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~- 768 (847)
..+..++||+. .|.|||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+.+++.+......
T Consensus 157 ~~~~~FaTcGe--~i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGE--QIDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCc--eeeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 88888999975 499999987 67788887778889999999999999999999999999999999887766543221
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-.|+.. ....+.++.+|..++.+|.+.....+....++ .+.+.++++.+ .+.-|++||.|.+||||.+.
T Consensus 234 ~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh------vsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 234 TICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH------VSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ceecCc-cccceeeccccccceehhhhhhcccchhhccc------ceeEEEeccCC-CcchhccccccceEEEeecC
Confidence 222332 44456678899999999977665544433332 23344455555 57779999999999999873
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=179.55 Aligned_cols=228 Identities=19% Similarity=0.183 Sum_probs=160.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------------- 671 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~----------------- 671 (847)
++..|.++++||+..+ .+.-...+.+|.+.|.++||.+ |...|++|+.||.|.|||++...
T Consensus 117 sasGDsT~r~Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EccCCceeeeeeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 7888999999999987 3333335889999999999999 55689999999999999986321
Q ss_pred ----------eeEEEccCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCCce-------EEEeccC---CCCeE
Q 003106 672 ----------SKTNLEEHSSLITD---VRFSPSMPRLATSSF-DKTVRVWDADNPGYS-------LRTFMGH---SASVM 727 (847)
Q Consensus 672 ----------~~~~l~~h~~~I~~---v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~-------~~~~~~h---~~~V~ 727 (847)
.++..+.+...|.+ +.|..|...||+++. |+.|+|||+++.... +..+.-| .-.+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112345556666 667778889999887 999999999973211 1112223 33577
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCC---ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee
Q 003106 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKVES---FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF 802 (847)
Q Consensus 728 sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~---~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~ 802 (847)
++..+..|.+++|+|. |+.|++||+.+-. .+..|.++. ..+..+...++..+..++.+...++|..........
T Consensus 276 nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 8888888999998888 9999999998743 334444432 234444445677888999999999998654333222
Q ss_pred ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 803 CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 803 ~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
... .+...++.+.|... ...-+++++.|..++||++-
T Consensus 355 ~l~--Ght~eVt~V~w~pS----~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 355 LLL--GHTREVTTVRWLPS----ATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred hhh--CcceEEEEEeeccc----cCCCceeeccCcceEEEecc
Confidence 222 23445566666633 33448888999999999984
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=182.89 Aligned_cols=235 Identities=20% Similarity=0.224 Sum_probs=181.6
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCc-hhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEe
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLE-LRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~-~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd 621 (847)
+.|..+.+.++|.+||.++++.+++ ++|+....+ ..+.++. .+ ....++..+. ++..+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g----~~v~~ia~~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SG----ELVSSIACYSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cC----ceeEEEeecccceEEeeccceEEEee
Confidence 4566678899999999999988766 889876552 2222211 11 1222222222 688899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+..+. .-..+..-+-++++++|+.+|+++|.||+|-.|+|-++.+......+++|.++|.+|.|+|.+++||+.+.|
T Consensus 83 fps~~---~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 83 FPSGE---EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred CCCCC---ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence 88763 333344456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--CceEEE
Q 003106 702 KTVRVWDADNPGYSLRTFMGH--------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SFCCWC 771 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h--------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~~v~~ 771 (847)
|.|+|||+.+ +.+..++.+- ...+..++|+|++..++ ..+.|+.|++|+..+++....+... ...+.+
T Consensus 160 G~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la-~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 160 GKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA-VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred ceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEE-eeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999999997 6555554331 44577899999988776 4455899999999999988877643 333555
Q ss_pred EEec-CCCEEEEEcCCCcEEEEcCCc
Q 003106 772 VNAM-NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 772 ~~~~-~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+. ++.++.++.-+|.|.|||...
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 5554 566888999999999999763
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=159.95 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=192.0
Q ss_pred eeccccCCCCCCCcceEEEecCCCeEeec----CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEE
Q 003106 543 ISMPALPHSGTTSKPLMMFGTDGAGTLTS----PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGR 618 (847)
Q Consensus 543 ~~~~~~~~~~~~~~~~v~~s~dG~~~~~~----~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~ 618 (847)
+.+.+........+..+.+.+.+..+... ....||++...-.... +++ ..+..-...+.-..+.
T Consensus 29 FlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~---ila---------T~yn~~s~s~vl~~aa 96 (370)
T KOG1007|consen 29 FLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR---ILA---------TVYNDTSDSGVLTGAA 96 (370)
T ss_pred EEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc---eEE---------EEEeccCCCcceeeEE
Confidence 33444444555556677777766654332 3446787765432221 111 1111111222334566
Q ss_pred EEeccCCc------eeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEc-----cCCCCeEE
Q 003106 619 GMDVSQGF------SFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITD 685 (847)
Q Consensus 619 vwd~~~~~------~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~-----~h~~~I~~ 685 (847)
||.+.... +++.+..+. .+-+.|.|+.|.|++..|++-. |..|.+|+++.... +..+. +|....++
T Consensus 97 iw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~fts 175 (370)
T KOG1007|consen 97 IWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTS 175 (370)
T ss_pred EEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecc
Confidence 78776532 345555554 6677999999999999999875 88999999986554 44432 35667889
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEE
Q 003106 686 VRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVF 762 (847)
Q Consensus 686 v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~ 762 (847)
-+|+| +++.+++.+ |++++.||+|+..+....-..|...|..++|+|+..++|++|+.||.|+|||+|.. ..+..+
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 99998 677777766 89999999998555555556788999999999999999999999999999999965 588899
Q ss_pred eeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeec---------------------cccc-CCCCcccccc
Q 003106 763 KVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCG---------------------LGWY-GSDEIPAPSW 818 (847)
Q Consensus 763 ~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~---------------------~~~~-~~~~~~~~~w 818 (847)
.+|..+||++.+.. +-.+.+++.+..|.++....+....... .+.. ..+.....+|
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 99999999998764 4467788888888887633322111000 0000 0111122233
Q ss_pred ccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 819 KVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 819 ~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+++...+.-+|++-++||.|.|-.+
T Consensus 335 ~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 335 ALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred EEeeccCCCeeEEEeccCceEEeecC
Confidence 33444556778999999999988765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=173.91 Aligned_cols=272 Identities=15% Similarity=0.194 Sum_probs=197.6
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
.+.+++|+.+.+.++.+. ...||++...=+.. .+-.|.-+..++.....++ +.+.+|.|..||+.+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~----~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-- 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE----PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-- 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee----EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--
Confidence 467888888877766544 44899998753322 1223345555554333333 7788999999999966
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|.|+|++..|++|+.||.|+
T Consensus 101 -k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 101 -KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred -ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 6777788889999999999999999999999988888887766543 3445678999999999999999999999999
Q ss_pred EEECCCCCceEEE-------e-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC
Q 003106 706 VWDADNPGYSLRT-------F-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 706 iWD~~~~~~~~~~-------~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+||+.. +..+.. + ++....|++|.|-.++ .+++|+..|+|.+||...+..+..++.|..-|.|+...+.
T Consensus 180 iwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 180 IWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 999998 443331 1 1234568999998775 5679999999999999999999999999999999987654
Q ss_pred -CEEEEEcCCCcEEEEcCCcccceeeeccc--ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 778 -PCLWDKLDAGDIQISDSLFINANIFCGLG--WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 778 -~~l~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..++++..++.|.-+........ +.... ..+..++ +.|. .-+..+++|+.|+++.+-..
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~-wv~~~~r~~h~hdv--rs~a-----v~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSE-WVINSRRDLHAHDV--RSMA-----VIENALISGGRDFTLAICSS 318 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccc-eeeeccccCCcccc--eeee-----eecceEEecceeeEEEEccc
Confidence 78888888888776653322111 11111 1112222 2222 12457999999998877544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=162.79 Aligned_cols=209 Identities=17% Similarity=0.148 Sum_probs=161.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD~ 709 (847)
..|.+.|.++...--|++||||+.|++|+||.++.. +.+.+|.+|.++|+.++|.. -|..||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 569999999988889999999999999999999843 67889999999999999965 5899999999999999998
Q ss_pred CCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC---ceEEEEeeCCceEEEEEecC--------
Q 003106 710 DNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG---SCTRVFKVESFCCWCVNAMN-------- 776 (847)
Q Consensus 710 ~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~-------- 776 (847)
.++. .....+..|.+.|++|+|.|.+ ..+|++++.||.|.|.++++. ...+....|...|.+++..+
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8732 1245567899999999999974 336678889999999999864 23345567777777665432
Q ss_pred -------CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 777 -------RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 777 -------~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..++.++..|..|+||+.....-... .+...+.+.+....|.+...- ...+|++++.||+|.||..+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-~~l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-RTLEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhh-hhhhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEec
Confidence 24578888899999998554322222 222335666777778765533 35789999999999999764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=147.31 Aligned_cols=237 Identities=17% Similarity=0.219 Sum_probs=170.7
Q ss_pred ccCCCCCCCcceEEEecCCCeEeecCCCeE-----EeCCCCchh-hccccccccCCCCCceEEeeecCC----------C
Q 003106 547 ALPHSGTTSKPLMMFGTDGAGTLTSPSNQL-----WDDKDLELR-ADMDRLVEDGSLDDNVESFLSHDD----------T 610 (847)
Q Consensus 547 ~~~~~~~~~~~~v~~s~dG~~~~~~~~~~i-----WD~~~~~~~-~~~~~~~~~g~~d~~v~~~~s~d~----------t 610 (847)
.....+..++.+++|+|+|..+++++.++- ++.+++... .+++... +|+.|+-....++ .
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm----hdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM----HDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee----cCCceeeeEEecCCCcCceEEEec
Confidence 334455667889999999999999887742 333333322 1222222 3334433222221 3
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-------CCCCe
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLI 683 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~I 683 (847)
+..|..|.+-|..++ ..+..+.+|++.|.++- +=++-.|++|+.|.+|++||++-..++.++.. ..+.|
T Consensus 159 gagdc~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred CCCcceEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 456677777777766 56667889999998874 22678999999999999999998888877642 23679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----ceE
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCT 759 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----~~~ 759 (847)
.+|+..|.|++|++|-.|....+||++. +..+..|..|...|.||.|+|... ++++|+.|..|++-|+... -.+
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcCce
Confidence 9999999999999999999999999997 888999999999999999999865 5569999999999998743 233
Q ss_pred EEEeeCCce-EEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 760 RVFKVESFC-CWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 760 ~~~~~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.+...|... +.|-....+..+.+.+.++.+.+|.
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 344445444 4444434455566667777777775
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=161.50 Aligned_cols=196 Identities=15% Similarity=0.283 Sum_probs=143.1
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-Ccee-EEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 636 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 636 ~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
...+.|.+|+||| ...+|+.||+|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4678899999999 666777999999999999985 3333 34457999999999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
+ .+..+..|.++|.++.|-+... .+|+||+.|++|++||+|....+.++..... +++++... ..+..+..++.|.+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~~-pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVLY-PMAVVATAERHIAV 180 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhccC-ceeEEEecCCcEEE
Confidence 4 5677778999999999987643 3677999999999999999998888876544 55554333 34456667778888
Q ss_pred EcCCcccceeeecccccCCCCccccccc---cccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINANIFCGLGWYGSDEIPAPSWK---VSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~~~~~~w~---~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++............ + -.-|- ++|.. +..-++.|+-.|.|.|..+
T Consensus 181 ynL~n~~te~k~~~----S----pLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 181 YNLENPPTEFKRIE----S----PLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred EEcCCCcchhhhhc----C----cccceeeEEEEEe-cCCceEeeeecceEEEEec
Confidence 87542211111100 0 01122 23333 3334578888888777654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=162.18 Aligned_cols=230 Identities=19% Similarity=0.224 Sum_probs=182.8
Q ss_pred cCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEec-cCCceeeEeEEee
Q 003106 563 TDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDV-SQGFSFKEANSVR 635 (847)
Q Consensus 563 ~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~-~~~~~~~~~~~l~ 635 (847)
|+..+.++++.+ ++||.-+++++..+..+-+...+....++-+++|+ .++...+||++|+ +.|.......++.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 444444554433 89999999999887776666666667777889998 6888899999999 4553333333322
Q ss_pred ----cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 003106 636 ----ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDA 709 (847)
Q Consensus 636 ----~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~ 709 (847)
+..+.|.|++|+| +.+.++.|+.-..+-||.-....++..+-+|.+.|+.++|+++|+.|++|.. |-.|.+||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 3378899999999 6779999999999999999999999999999999999999999999999985 788999999
Q ss_pred CCCCceEEEeccCCC-CeEEEEE--ecCCCeEEEEEeCCCcEEEEECCC-CceEEEEeeCCceEEEEEecCCCEEEEEcC
Q 003106 710 DNPGYSLRTFMGHSA-SVMSLDF--HPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKVESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~-~V~sl~f--sp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 785 (847)
|....++..+..|.+ .=-.|-| .|+++ +|++|+.||.|++||++. +..+.++..+..++..+......-+.+.+.
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 987788888887765 2234444 56766 777999999999999998 777888888999999998877777777666
Q ss_pred CCcEEEEc
Q 003106 786 AGDIQISD 793 (847)
Q Consensus 786 ~g~i~i~d 793 (847)
+..+..+.
T Consensus 360 Gqr~f~~~ 367 (406)
T KOG2919|consen 360 GQRIFKYP 367 (406)
T ss_pred CceeecCC
Confidence 66554443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=169.70 Aligned_cols=221 Identities=18% Similarity=0.287 Sum_probs=171.1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+-.++.|.+|++..+. -....+.++ ...|.+++|+ ++.+|++.+.+|.|.-||+.+++.+..+....+.|++++.+
T Consensus 43 sRt~g~IEiwN~~~~w--~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~ 119 (691)
T KOG2048|consen 43 SRTDGNIEIWNLSNNW--FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN 119 (691)
T ss_pred eccCCcEEEEccCCCc--eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC
Confidence 5578999999999863 344445544 5679999999 66788888999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---- 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---- 763 (847)
|.++.++.||+||.+.++++.. +++. +.|...+++|.+|+|+|++.++ ++|+.||.|++||+.++..++...
T Consensus 120 p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d 197 (691)
T KOG2048|consen 120 PENTILAIGCDDGVLYDFSIGP-DKITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKSGQTLHIITMQLD 197 (691)
T ss_pred CccceEEeecCCceEEEEecCC-ceEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCCCceEEEeeeccc
Confidence 9999999999999888888876 4432 2233456899999999998755 599999999999999998776222
Q ss_pred ----eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 764 ----VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 764 ----~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
.....||++.+..+..+.++.+.|.|.+||..+.. ........ ..++.+ +.. ..+++++++++-|+.|
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT--LiqS~~~h-~adVl~----Lav-~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT--LIQSHSCH-DADVLA----LAV-ADNEDRVFSAGVDPKI 269 (691)
T ss_pred ccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc--hhhhhhhh-hcceeE----EEE-cCCCCeEEEccCCCce
Confidence 24567899999999999999999999999976432 22222211 112211 111 2257889999999998
Q ss_pred EEEEc
Q 003106 840 SSFIA 844 (847)
Q Consensus 840 ~vW~~ 844 (847)
.-|..
T Consensus 270 i~~~~ 274 (691)
T KOG2048|consen 270 IQYSL 274 (691)
T ss_pred EEEEe
Confidence 87765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=169.54 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=171.3
Q ss_pred CcceEEEecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC--
Q 003106 555 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG-- 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~-- 625 (847)
....+..+++|.+++++ +...+|.+.+|.+...+... +-...++.++.|+ +++.||.|.+|++..-
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 35677889999999887 34489999999887654321 2233344566666 8999999999997642
Q ss_pred ----ceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 626 ----FSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 626 ----~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
...+++..+..|+-+|+++...+. ..+|+|+|.|.+|++||+..+.++.++. ....|++|+.+|-++.+++|+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC
Confidence 256788889999999999998874 3689999999999999999999988874 567899999999999999999
Q ss_pred CCCcEEEEECCCC---------------CceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 700 FDKTVRVWDADNP---------------GYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 700 ~Dg~V~iWD~~~~---------------~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+|.|.+.++... ...+..+.||.. .|+|++.+-||. +|++|+.||.|+|||+.+..|++++
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999999887542 123567789988 999999999987 6779999999999999999999888
Q ss_pred eeCCceEEEEE
Q 003106 763 KVESFCCWCVN 773 (847)
Q Consensus 763 ~~~~~~v~~~~ 773 (847)
..-.+.|..+.
T Consensus 316 ~~~kgpVtnL~ 326 (476)
T KOG0646|consen 316 QTSKGPVTNLQ 326 (476)
T ss_pred hhhccccceeE
Confidence 75445554444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=166.73 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=144.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+++.|.+|++||+.++ ++..++..|.+.|.++.|+| ...+|++|+.|++|+|+|++........-...+.|..|+|
T Consensus 261 SgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 261 SGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred ecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 7899999999999988 78888889999999999999 5679999999999999999842222111124567999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE--eeC
Q 003106 689 SPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KVE 765 (847)
Q Consensus 689 sp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~--~~~ 765 (847)
.+... .++++..||+|+-+|+|..+.++.+++.|.+.|.+|+++.....++++++.|+.|++|++.......+. ...
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 99765 567788999999999999999999999999999999999999999999999999999999754432211 111
Q ss_pred CceEEEEEecC--CCEEEEEcCCCcEEEEcCCc
Q 003106 766 SFCCWCVNAMN--RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 766 ~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~ 796 (847)
-....|+..+. ...+..+...+.+++||...
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 12244544443 33455666667799998653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=167.82 Aligned_cols=254 Identities=12% Similarity=0.126 Sum_probs=184.7
Q ss_pred cCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC
Q 003106 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 650 (847)
Q Consensus 571 ~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg 650 (847)
++.++|||+...++...+. +..++-..+++-....-+++.|.+|+.|-+... ++.++. ....+..|.-+..+
T Consensus 88 DG~VkiWnlsqR~~~~~f~---AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~----p~~til-g~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFK---AHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP----PLHTIL-GKSVYLGIDHHRKN 159 (433)
T ss_pred CceEEEEehhhhhhhheee---cccCceeeEEecccceEEecCCcceeeeeccCC----cceeee-cccccccccccccc
Confidence 3445999998876655433 222222222222222227888999999998753 444444 34567777777778
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..++|||.+ |-|||.....++..+.-..+.|.+|.|+|... .|++|+.|+.|.|||+++ ..++.... -.-.-+.|
T Consensus 160 ~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi-~~mRTN~I 235 (433)
T KOG0268|consen 160 SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVI-LTMRTNTI 235 (433)
T ss_pred ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceee-eeccccce
Confidence 899999864 99999998899999988889999999999865 567777999999999998 56655543 23446779
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGW 807 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~ 807 (847)
+|+|. ...|++++.|..++.||++.- ..+.++..|...|..+++.+. ..+.+++-|+.|+||.....+..-.....
T Consensus 236 swnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk- 313 (433)
T KOG0268|consen 236 CWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK- 313 (433)
T ss_pred ecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-
Confidence 99995 556779999999999999974 578888999999999998764 46789999999999986543321111110
Q ss_pred cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 ~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+.++.|+ ++..+|++||.|+.||+|+.
T Consensus 314 -RMq~V~~Vk~S-----~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 314 -RMQHVFCVKYS-----MDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred -hhheeeEEEEe-----ccccEEEecCCCcceeeeec
Confidence 12233444455 47889999999999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-15 Score=158.04 Aligned_cols=252 Identities=12% Similarity=0.089 Sum_probs=162.4
Q ss_pred CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc
Q 003106 573 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 647 (847)
Q Consensus 573 ~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs 647 (847)
...+||+.+++....+... .. ...+.+.+++ ++..++.+++||+.++ +.+..+..+.. +..++|+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~---~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~-~~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVG---QR---PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD-PELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECC---CC---CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC-ccEEEEC
Confidence 3478998887654433211 10 1112223333 2456789999999876 33334444433 5788999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCceEEEeccCCCC
Q 003106 648 SDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSAS 725 (847)
Q Consensus 648 pdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-~V~iWD~~~~~~~~~~~~~h~~~ 725 (847)
++++.|+++ +.|+.|++||+.+.+.+..+.. ...+.+++|+|++++|++++.++ .+++||.++ ...+..+. ....
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVL-VDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEE-cCCC
Confidence 999977655 5689999999998888777753 33478999999999999888765 577889987 44444432 2345
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-------eEEEEEecC-CCEEE-EEcCCCcEEEEcCCc
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-------CCWCVNAMN-RPCLW-DKLDAGDIQISDSLF 796 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-------~v~~~~~~~-~~~l~-~~~~~g~i~i~d~~~ 796 (847)
+.+++|++++..+++++..++.|++||+++++++..+..+.. ....+.+.. ...++ ....++.+.+||...
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 678999999997777777799999999999988776653211 112333333 33333 345566799998653
Q ss_pred ccceeeecccccCCCCccccccccccccCCCcEEEEE-eCCCeEEEEEccC
Q 003106 797 INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGDSSLSSFIAGT 846 (847)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~DG~V~vW~~gt 846 (847)
... ..... ... ..+.+.+.+ ++.+|+++ ..+|.|+|||+.+
T Consensus 239 ~~~--~~~~~--~~~----~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 239 YEV--LDYLL--VGQ----RVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CcE--EEEEE--eCC----CcceEEECC-CCCEEEEEcCCCCeEEEEECCC
Confidence 222 11111 111 233444445 56666665 5699999999865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=158.38 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=165.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~ 685 (847)
.++..|.|+|.|+.++ +....+.+|...|+.|.|+|+ ..+|++||.|..||+|++.+..++..| .+|.+.|.+
T Consensus 110 ~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 5678899999999977 677889999999999999995 469999999999999999999998876 579999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCc------------------------e---EEEeccCCCCeEEEEEecCCCeE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGY------------------------S---LRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~------------------------~---~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
|+|+.+|.+|++|+.|..|++|++..+.. . ..+-.-|...|-|+.|--+ +
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd---~ 263 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD---F 263 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh---h
Confidence 99999999999999999999999984210 0 0122347778888888743 6
Q ss_pred EEEEeCCCcEEEEEC-CCCce-------------EEEEeeCCceEEEEEecC---CCEEEEEcCCCcEEEEcCCccccee
Q 003106 739 ICSCDGDGEIRYWSI-NNGSC-------------TRVFKVESFCCWCVNAMN---RPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~-~~~~~-------------~~~~~~~~~~v~~~~~~~---~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
+++-+.++.|..|.. +-++. +..+......+|.+.+.- ...+..+...|.+.+||.......
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~- 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP- 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence 668888999999988 32222 223333444455544332 245678889999999997654443
Q ss_pred eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 802 FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 802 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+..........+.+.. +...++.+|+..+.|++|.-||.-
T Consensus 343 ~~ttl~~s~~~~tVRQ~---sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQT---SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeee---eecccCcEEEEEeCCCcEEEEEee
Confidence 22211111112222211 123367889999999999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=175.89 Aligned_cols=225 Identities=16% Similarity=0.194 Sum_probs=175.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++|+..... ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+.++..-..+...+-++.+++|+
T Consensus 30 tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~ 105 (933)
T KOG1274|consen 30 TCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS 105 (933)
T ss_pred EecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEe
Confidence 68889999999987652 2333344478888888874 5599999999999999999887766666777899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---- 765 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---- 765 (847)
-+|+++|.||+|-.|+|-++.+ ......+.+|.+.|.+|.|+|.+. +||+.+.||.|+|||+.++.+.+++..-
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n 183 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN 183 (933)
T ss_pred cCCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc
Confidence 9999999999999999999998 677889999999999999999987 7778889999999999999887776532
Q ss_pred ----CceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 766 ----SFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 766 ----~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
...+..+++... ..+.....++.|.+|+...-......+... ....+....|+ +| +.||++++-||.|.
T Consensus 184 ~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~ws----Pn-G~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWS----PN-GKYIAASTLDGQIL 257 (933)
T ss_pred cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEc----CC-CcEEeeeccCCcEE
Confidence 233444455554 677788889999998855332222222222 22224455555 64 99999999999999
Q ss_pred EEEccC
Q 003106 841 SFIAGT 846 (847)
Q Consensus 841 vW~~gt 846 (847)
||++.|
T Consensus 258 vWnv~t 263 (933)
T KOG1274|consen 258 VWNVDT 263 (933)
T ss_pred EEeccc
Confidence 999873
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=163.70 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=190.6
Q ss_pred CCCCCCcceEEEecCCC-eEeecC----CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC-----CCCCCCcEE
Q 003106 550 HSGTTSKPLMMFGTDGA-GTLTSP----SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD-----TDPRDAGGR 618 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~-~~~~~~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~-----t~~~d~~v~ 618 (847)
......+.++.|.|-.. .+++.+ .+.+||+.+.+ ++.+.+.....+...|. +.+.+.. +.+.||+||
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~--~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE--KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC--CccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 34455778899998765 555443 34899996322 22222222222222222 2233332 788999999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCCCC-EEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMP-RLA 696 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~~~-~La 696 (847)
+-|+++. .++++..+......+.++.|+.+...++.|..=|...+||.++... ...+.-|...|.+|+++|-.. +||
T Consensus 261 ~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999988 6677777766677788999999888888888878999999996554 566778999999999999765 679
Q ss_pred EEeCCCcEEEEECCCCC--c-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC----CCceEEEEeeCC---
Q 003106 697 TSSFDKTVRVWDADNPG--Y-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN----NGSCTRVFKVES--- 766 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~--~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~----~~~~~~~~~~~~--- 766 (847)
|++.|++++|||+|... . .+.....|...|.+..|+|.+..+ +|.+.|.+|||||.. ......++....
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeecccccccCCccceeeccCccc
Confidence 99999999999998632 1 123334699999999999999885 577889999999984 223333332211
Q ss_pred ceEE---EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 767 FCCW---CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 767 ~~v~---~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.++. .....+...++.+.--..|.+++..... ..+.+.......+++ -..+++.+..+++.|+.-|.|.||.
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q--~v~el~~P~~~tI~~---vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ--MVCELHDPESSTIPS---VNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCE--EeeeccCcccccccc---ceeecccccceeccCCccceEEEEe
Confidence 1221 1222355677778888889998865332 223222111212222 2445675555677778889999986
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
.
T Consensus 494 ~ 494 (498)
T KOG4328|consen 494 N 494 (498)
T ss_pred c
Confidence 4
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=166.56 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=161.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~f 688 (847)
+++..++|+|||+... .+.+.+++|.+.|+|+.++-...+||+++..|.|.|..+.++....+|... ...|.-|+|
T Consensus 96 sgG~~~~Vkiwdl~~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY 172 (673)
T ss_pred ccCcCceeeehhhHHH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec
Confidence 6788999999999854 466778999999999999999999999999999999999998887788654 345669999
Q ss_pred cCCCCE-EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 689 SPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 689 sp~~~~-Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
++..++ |.+++++|.|.+||+..........+.|..+...|||+|..+.||++.+.|..|.+||++..+....+.....
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P 252 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP 252 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC
Confidence 998875 5778999999999998755555566789999999999999999999999999999999998777666654433
Q ss_pred eEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccc
Q 003106 768 CCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK 819 (847)
Q Consensus 768 ~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~ 819 (847)
...+++ .++..+..|...|.|+.||.+.....+.... .+...++...|-
T Consensus 253 -lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~vafq 302 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVAFQ 302 (673)
T ss_pred -cceeeecCCceEEEeecCCceEEEEecccCCCCceEee--ecccceeEEEee
Confidence 344444 4566778899999999999775544433322 223335555554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=189.39 Aligned_cols=228 Identities=14% Similarity=0.161 Sum_probs=174.2
Q ss_pred CCCCCCcEEEEeccC---CceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCe
Q 003106 610 TDPRDAGGRGMDVSQ---GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~---~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I 683 (847)
.+..||.|.+||... +..+..+.+...|++.|..+.|++... +||+|+.||.|.|||+.+.+.-.++. ...+.|
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI 164 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI 164 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence 677899999999776 446667788899999999999999655 99999999999999998755544442 245779
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCC---cEEEEECCCC-
Q 003106 684 TDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDG---EIRYWSINNG- 756 (847)
Q Consensus 684 ~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~- 756 (847)
.||+|+..-. .|++++.+|++.|||+|. .+.+..+..|.. .+..|.|||++..-|++++.|. .|.+||+|.-
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 9999998644 678899999999999998 555666654443 4788999999887776776653 6999999964
Q ss_pred ceEEEEeeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 757 SCTRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
..++++.+|...|.++.+.. ...+++...|+.|.+|+... .+++..+.. ...- ++++.+.+.+..+|++++
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~-~~nW----~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPA-QGNW----CFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCC-CCcc----eeeeeecCCCcchhhhhe
Confidence 57788899999999988764 35677888999999999663 333333322 1111 223334455667899999
Q ss_pred CCCeEEEEEcc
Q 003106 835 GDSSLSSFIAG 845 (847)
Q Consensus 835 ~DG~V~vW~~g 845 (847)
-||.|.||.+.
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 99999999763
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=160.97 Aligned_cols=289 Identities=12% Similarity=0.143 Sum_probs=205.3
Q ss_pred cccCCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccc-cccCCCCCceEEeeecCC-----CCCCCCc
Q 003106 546 PALPHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRL-VEDGSLDDNVESFLSHDD-----TDPRDAG 616 (847)
Q Consensus 546 ~~~~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~-~~~g~~d~~v~~~~s~d~-----t~~~d~~ 616 (847)
+...+.....+.++.|.|....+++++-+ +||-++. +....+..+ +....+ -++.+.+++ ++++...
T Consensus 206 aNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi---~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 206 ANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPI---QKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred cccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecC-ccChhheeeeeccCcc---ceeeecCCCceEEEecccceE
Confidence 34456666788999999999999998766 6776643 222222221 111111 122233333 5788889
Q ss_pred EEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 617 GRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
...||+.+. .+..+..+.++. ..+....+++++++|+..|..|.|.|....+++.+.+++ -.+.|.+++|+.+++.|
T Consensus 282 ~ysyDle~a-k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETA-KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeecccc-ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEE
Confidence 999999988 555566666665 456788899999999999999999999999999998886 45779999999999999
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCC------CceEEEEeeCCce
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSCTRVFKVESFC 768 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------~~~~~~~~~~~~~ 768 (847)
++++.+|.|.+||++. ..+++.+....+ .-+++|.+.++. +|++|+..|.|.|||..+ .++++.+..-...
T Consensus 360 ~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 9999999999999998 578888753222 235677778887 788999999999999764 3566666666677
Q ss_pred EEEEEecCCCEEEEEcCCC---cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAMNRPCLWDKLDAG---DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|..+.|..+..|.+.++.. .+++.... ...+|..+.... .....+-++++.+ .+.+++.|..+|.|.+|++.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvP--S~TVFsNfP~~n--~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVP--SCTVFSNFPTSN--TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEecc--ceeeeccCCCCC--CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 8888888877776665543 34444322 233344433321 1112222233334 68999999999999999999
Q ss_pred CC
Q 003106 846 TY 847 (847)
Q Consensus 846 ty 847 (847)
+|
T Consensus 513 hy 514 (514)
T KOG2055|consen 513 HY 514 (514)
T ss_pred cC
Confidence 87
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=172.17 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=158.5
Q ss_pred CCCCCcEEEEeccCCceee----EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFK----EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~I~ 684 (847)
+..+|.|.++|.... .++ .+.....|...|.++.|-|....|++++.|.+|++||++..+++.. +.+|...|.
T Consensus 70 adE~G~i~l~dt~~~-~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~Svk 148 (720)
T KOG0321|consen 70 ADEDGGIILFDTKSI-VFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVK 148 (720)
T ss_pred ecCCCceeeecchhh-hcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccc
Confidence 345677778887654 222 1345568999999999999777899999999999999999888777 889999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCc--------------------------eEEEeccCCCCeEE---EEEecC
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGY--------------------------SLRTFMGHSASVMS---LDFHPN 734 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~ 734 (847)
+++|.|+.. .|++|+.||.|.|||++..+. -+...+.+...|.+ +.+..|
T Consensus 149 S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD 228 (720)
T KOG0321|consen 149 SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD 228 (720)
T ss_pred hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec
Confidence 999999765 778999999999999985321 01122234444444 444455
Q ss_pred CCeEEEEEeC-CCcEEEEECCCCceEEEE--------eeC---CceEEEEEec-CCCEEEEEcCCCcEEEEcCCccccee
Q 003106 735 KDDLICSCDG-DGEIRYWSINNGSCTRVF--------KVE---SFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 735 g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~--------~~~---~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
.. .|++++. |+.|+|||++...+.... ..+ ...+.++..+ .+.++++.+.|+.|+.|+........
T Consensus 229 e~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 229 ES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred cc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc
Confidence 44 5567776 999999999976443322 122 2234444433 45788888889999999965433322
Q ss_pred e-ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 802 F-CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 802 ~-~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
. +..+... ...+.-.+...++.+|++|+.|+.+++|.+.+
T Consensus 308 ~~~~sg~~~-----~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 308 VAEFSGKLN-----SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred hhhccCccc-----ceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 2 2222211 11222334556789999999999999998753
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=151.45 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=168.8
Q ss_pred CCCCCCcEEEEeccC-CceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC--C-------CceeEEEc
Q 003106 610 TDPRDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD--T-------LKSKTNLE 677 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~--~-------~~~~~~l~ 677 (847)
+++.|.+++|||..+ ..++.+....+.|.+.|..|.|.+ -|..||+|+.|++|+||.-. . .....++.
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV 109 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence 788999999999544 347888899999999999999987 68999999999999999752 1 12345566
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCce-----EEEe-------ccCCCCeEEEEEecCC--CeEEEE
Q 003106 678 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYS-----LRTF-------MGHSASVMSLDFHPNK--DDLICS 741 (847)
Q Consensus 678 ~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~-----~~~~-------~~h~~~V~sl~fsp~g--~~ll~s 741 (847)
.....|++|.|.|. |-.||+++.||+||||+.-.+... ..++ ..+.....||.|++.. +-+|+.
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 77889999999996 668899999999999998764321 1111 2466778999999752 336666
Q ss_pred EeCC-----CcEEEEECCCC----ceEEEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCCcccceeee----
Q 003106 742 CDGD-----GEIRYWSINNG----SCTRVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSLFINANIFC---- 803 (847)
Q Consensus 742 ~s~D-----g~V~iWD~~~~----~~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~~~~~~~~~---- 803 (847)
|+.+ +.+.||....+ ..+.++..+...|+.+++.+. ..+..++.+| |+||........++.
T Consensus 190 gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~ 268 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL 268 (361)
T ss_pred EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence 6644 48999977543 244566788888998887543 3466677777 999885432211110
Q ss_pred -c-----c---cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 804 -G-----L---GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 804 -~-----~---~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
. + ...........+|.+.+.- .+.+|.+.+.||.||+|+..|
T Consensus 269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 269 APDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhhh
Confidence 0 0 0112333455677777665 578899999999999998754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=160.90 Aligned_cols=143 Identities=18% Similarity=0.286 Sum_probs=116.5
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeE--EEccCC-CCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~-~~I~~ 685 (847)
+...+.|++||..++ ..+..+++|...++.++|.. ....+.+|+.||+|++||+++..... .+..+. .+..|
T Consensus 46 ~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred EecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence 345688999999876 56777888999999999987 46789999999999999999754433 344555 46778
Q ss_pred EEEcCCCCEEEEEe----CCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 686 VRFSPSMPRLATSS----FDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 686 v~fsp~~~~Lasgs----~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++..-.+..+++|. .|-.|.+||+|.....++.+ ..|.+.|++|+|+|...++|+||+.||.|.|||++..
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 88877777888875 37789999999855545444 6799999999999999999999999999999999753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=151.35 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=173.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+++.|+++++|+++.. .+......++|.+.|-.++|+| ...+|++++.|++|++||++.++++..+......| -+.|
T Consensus 37 sgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~w 114 (313)
T KOG1407|consen 37 SGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITW 114 (313)
T ss_pred ecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEE
Confidence 6788999999999987 5555667789999999999998 66799999999999999999999998886555544 5789
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|+|.+++.++.|..|.+.|+++ ...+... ...-.+..++|+.++..+|++ ...|+|.|.....-+.+..++.|...
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~-~~~~~~~-~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDART-YKIVNEE-QFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecc-cceeehh-cccceeeeeeecCCCCEEEEe-cCCceEEEEeccccccccccccCCcc
Confidence 99999999999999999999998 4544443 245568889999776655544 44799999999999999999999999
Q ss_pred EEEEEecCCC-EEEEEcCCCcEEEEcCCcc-cceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 769 CWCVNAMNRP-CLWDKLDAGDIQISDSLFI-NANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 769 v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.|+.++... ++..|+.+..+.+||.... ....+.+..| +.+..+ -.+++.+|++|+.|-.|-|=++.|
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw------pVRTlS---FS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW------PVRTLS---FSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC------ceEEEE---eccCcceeeccCccceEEeEeccc
Confidence 9999998765 4567888888999995432 2222222221 111111 235789999999999998766544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=164.17 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=152.9
Q ss_pred CCCCCCcEEEEeccCCcee--eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGFSF--KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h 679 (847)
..+..|.|.|+++.....+ ..+-.+ -....|++++|.| |...||++++||.|+||.+..+ .+...++.|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 3455788999998763211 111122 1356799999999 8889999999999999998743 455678899
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-
Q 003106 680 SSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS- 757 (847)
Q Consensus 680 ~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~- 757 (847)
...|++|+|+|- .+.|+++++|-+|+|||+.+ ......+.+|.+.|.+++|+|+|. .+++.+.||+|+||+.++++
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCC
Confidence 999999999996 46889999999999999998 677788999999999999999998 56799999999999998764
Q ss_pred eEEEEeeC--CceEEEE-EecCCCEEEEEc---CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE
Q 003106 758 CTRVFKVE--SFCCWCV-NAMNRPCLWDKL---DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831 (847)
Q Consensus 758 ~~~~~~~~--~~~v~~~-~~~~~~~l~~~~---~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~ 831 (847)
.+..-++. ......+ ..++...+..+. +.+.|.+|+........+.....-.........| ......+|+
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~Y----D~Ds~~lfl 830 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHY----DYDSNVLFL 830 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccc----cCCCceEEE
Confidence 22222211 1111111 112333333332 2234555653322211111111100111111112 233456899
Q ss_pred EEeCCCeEEEEEccC
Q 003106 832 TGCGDSSLSSFIAGT 846 (847)
Q Consensus 832 sGs~DG~V~vW~~gt 846 (847)
+|-+|..|.+|++-+
T Consensus 831 tGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIY 845 (1012)
T ss_pred ecCCCceEEEEEecC
Confidence 999999999998743
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-15 Score=151.67 Aligned_cols=210 Identities=18% Similarity=0.252 Sum_probs=145.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWD 708 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD 708 (847)
.+|.+-|.|+.|...|+++|||+.|++|+|||.++ ..+....+.|.+.|..|.|.+- |..+|+|+.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999653 3566678899999999999653 88999999999999997
Q ss_pred CCCC--------CceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCc------eEEEEe-------eCC
Q 003106 709 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGS------CTRVFK-------VES 766 (847)
Q Consensus 709 ~~~~--------~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~------~~~~~~-------~~~ 766 (847)
-... -..+.++....+.|+.|.|.|.. ...+++++.||+||||+.-.-- ..+.+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 6210 12345566678899999999973 3457899999999999875432 222222 233
Q ss_pred ceEEEEEec----CCCEEEEEcCC-----CcEEEEcCCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 767 FCCWCVNAM----NRPCLWDKLDA-----GDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 767 ~~v~~~~~~----~~~~l~~~~~~-----g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
....|+.+. ....+..++.+ +.+.||........... .....+.+.++...|.+.... .-.+|++++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-SYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC-ceeeEEEeecC
Confidence 344555543 33455555554 35777764332212111 111123444555666654433 34679999999
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
| |+||+++.
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999873
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-14 Score=153.96 Aligned_cols=226 Identities=12% Similarity=0.038 Sum_probs=146.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..|+.+++||+.++ +.+..+..+. .+.+++|++|++.| ++++.|+.|++||+.+++.+..+..+.. +..++|+
T Consensus 7 ~~~d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~ 81 (300)
T TIGR03866 7 NEKDNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALH 81 (300)
T ss_pred ecCCCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEEC
Confidence 356789999999876 3555565554 47789999999976 5667889999999999888877765544 5788999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+++.|+++ +.|+.|++||+++ ...+..+.. ...+.+++|+|++..++ +++.+ ..+.+||.++++.+..+.....
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIET-RKVLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-CCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence 999977655 5689999999997 556666642 34578899999998655 55544 4677889998887665543322
Q ss_pred eEEEEEec-CCCEEEEE-cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE-EEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDK-LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC-LYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-l~sGs~DG~V~vW~~ 844 (847)
..++.+. +...++.. ..++.+.+|+..........................+.+.+ ++.+ +++.+.++.|.+|++
T Consensus 159 -~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 159 -PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 3344444 33445444 45888999996533211111111000000000111122233 4554 444566778999998
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
.+
T Consensus 237 ~~ 238 (300)
T TIGR03866 237 KT 238 (300)
T ss_pred CC
Confidence 64
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=155.00 Aligned_cols=234 Identities=17% Similarity=0.190 Sum_probs=156.9
Q ss_pred EEEecCCCeEeecCCC---eEEeCCCCchhhccc---------cccccCCCCCceEEeeecCC----------CCCCCCc
Q 003106 559 MMFGTDGAGTLTSPSN---QLWDDKDLELRADMD---------RLVEDGSLDDNVESFLSHDD----------TDPRDAG 616 (847)
Q Consensus 559 v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~---------~~~~~g~~d~~v~~~~s~d~----------t~~~d~~ 616 (847)
..|+|||.-+++...+ ++|++..-...+..+ .+-.........++|++.-. ...++.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 4799999999887766 778874322222110 00001111112345554322 5778999
Q ss_pred EEEEeccCCceeeEeEEeecCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcee--EEEc-----cCCCCeEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKV---ICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSK--TNLE-----EHSSLITD 685 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V---~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~--~~l~-----~h~~~I~~ 685 (847)
|++||..+| .++.......|-+.+ .|++|+|||..|++| ....|+|||+ +.|... .... +..+.|.|
T Consensus 135 Ih~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 135 IHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred eeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 999999998 555544445565554 489999999999987 5679999998 444322 2222 23678999
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEe
Q 003106 686 VRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK 763 (847)
Q Consensus 686 v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~ 763 (847)
++|+|-. +.+++|+...++-||.-.. ..++..+.+|.+.|+.+.|+++|.+++.-+-.|..|.+||+|.- ..+..+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999965 4889999999988887776 67788888999999999999999988744445789999999964 3444554
Q ss_pred eCCc-eEEEEEe---cCCCEEEEEcCCCcEEEEcCC
Q 003106 764 VESF-CCWCVNA---MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 764 ~~~~-~v~~~~~---~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.|.. .--.+.| .....+..+..+|.|.+||..
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 4433 1111222 233455566677777777754
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=170.04 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=162.2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.++..+.+|...|+||+.+|++++||+++... .|+||+..+...+..+.+|.-.|+.|+|+||+++|++.|.|.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 456677899999999999999999999998643 589999999888889999999999999999999999999999
Q ss_pred cEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--ceEEEEe--eCCceEEEEEec
Q 003106 703 TVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFK--VESFCCWCVNAM 775 (847)
Q Consensus 703 ~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~--~~~~~~~--~~~~~v~~~~~~ 775 (847)
++.+|....... .....+.|+..|++++|+|++.+ |+|+|+|.+|+||..... +++..+. .....|+.+++.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 999998854222 22336789999999999999875 779999999999999877 5554432 345556666543
Q ss_pred ------CCCEEEEEcCCCcEEEEcCCccccee------eecc---cccCCCCcccccccccc-----ccCCCcEEEEEeC
Q 003106 776 ------NRPCLWDKLDAGDIQISDSLFINANI------FCGL---GWYGSDEIPAPSWKVSC-----RSCRECCLYTGCG 835 (847)
Q Consensus 776 ------~~~~l~~~~~~g~i~i~d~~~~~~~~------~~~~---~~~~~~~~~~~~w~~~~-----~~~~~~~l~sGs~ 835 (847)
....+..|.+.|.|.+|.....+... .... ...+...+....|...| .......|++|+.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 23467899999999999844211110 0000 01123334555676554 1112345899999
Q ss_pred CCeEEEEEcc
Q 003106 836 DSSLSSFIAG 845 (847)
Q Consensus 836 DG~V~vW~~g 845 (847)
|-++||+++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=152.25 Aligned_cols=195 Identities=18% Similarity=0.248 Sum_probs=144.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|+|++|+++|+.|+|++.|..|++||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 66777775
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-C---ce-EEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-S---FC-CWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~---~~-v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
..++|+.+.|+|...+.++++--+..-.+-++..++ -..+... . .. ..+..++ ....+++|...|.+.+++.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 678999999999877777666556556666665532 1112111 1 11 1112233 4568899999999999986
Q ss_pred CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
........++.. ....+.. +. .+..+.+|+..+.|.+||+|+..
T Consensus 183 ~t~e~vas~rit--s~~~IK~----I~-~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRIT--SVQAIKQ----II-VSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeec--hheeeeE----EE-EeccCcEEEEecCCceEEEEehh
Confidence 644322222211 1111111 11 12357899999999999999864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=166.77 Aligned_cols=129 Identities=22% Similarity=0.398 Sum_probs=110.6
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
....++..|.+.|++++|++....|++|+.||+|++|++. ..+++.+|++|.++|.||++.+++.++++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3344788899999999999999999999999999999983 24678899999999999999999999999999
Q ss_pred CCcEEEEECCC---------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 701 DKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 701 Dg~V~iWD~~~---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
||+|++|++.. +.....++.||.+.|+.++++....+| ++|+.||+||.|+......
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL-LSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce-eeecCCceEEeeccCCcCc
Confidence 99999995531 123456788999999999999987765 5999999999999865543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=160.29 Aligned_cols=293 Identities=13% Similarity=0.147 Sum_probs=209.8
Q ss_pred CCCCCCCcceEEEecCCCeEeecCCC---eEEeCCCC--chhhccccccccC-CCCCce-EEeeecCC---CCCCCCcEE
Q 003106 549 PHSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDL--ELRADMDRLVEDG-SLDDNV-ESFLSHDD---TDPRDAGGR 618 (847)
Q Consensus 549 ~~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~--~~~~~~~~~~~~g-~~d~~v-~~~~s~d~---t~~~d~~v~ 618 (847)
-..|..-+.++-|.|++..+++++.+ -+|..++. -.+.. .++.+.+ +..+-. +.|..+.. +-++.|..+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~-vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV-VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE-EEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34555667899999999888887776 57877654 22222 2222222 121222 23333322 556778899
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------------------C---------
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------------------T--------- 669 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------------------~--------- 669 (847)
+|.......+.....+.+|.+.|++++|+|.|++|++.|.|-+-|||-.- .
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 99955554667777889999999999999999999999999887775211 0
Q ss_pred ------CceeEE--------------------------------------------------------------------
Q 003106 670 ------LKSKTN-------------------------------------------------------------------- 675 (847)
Q Consensus 670 ------~~~~~~-------------------------------------------------------------------- 675 (847)
.+.++.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 001111
Q ss_pred -------------------EccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEeccCCCCeEEEEE
Q 003106 676 -------------------LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (847)
Q Consensus 676 -------------------l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~h~~~V~sl~f 731 (847)
+.+|...|+|++.+|++++|||++.. ..|+||+..+ -..+..+.+|.-.|+.|+|
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEEEEE
Confidence 23588899999999999999999853 3599999988 5667789999999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCc----eEEEEeeCCceEEEEEecCCCE-EEEEcCCCcEEEEcCCcccceeeecc-
Q 003106 732 HPNKDDLICSCDGDGEIRYWSINNGS----CTRVFKVESFCCWCVNAMNRPC-LWDKLDAGDIQISDSLFINANIFCGL- 805 (847)
Q Consensus 732 sp~g~~ll~s~s~Dg~V~iWD~~~~~----~~~~~~~~~~~v~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~- 805 (847)
+|||++|| +.+.|+++.+|...... .....+.|...|+.+++.+... +++++.|+.+++|..........+.+
T Consensus 581 Spdg~~LL-svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 581 SPDGRYLL-SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred CCCCcEEE-EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 99998555 99999999999885432 2233678999999998776554 88999999999998654433333332
Q ss_pred cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 806 GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 806 ~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+..++.+.|....+.....++++|-..|.|.+|..
T Consensus 660 ~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 660 CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 223455566666665555655668999999999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=149.64 Aligned_cols=193 Identities=14% Similarity=0.185 Sum_probs=146.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
..+.|.+|.|++.+..|+++++||++++||+........+ .|..+|.+++|.+ ...+++|+.||.|+++|+.+ +. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~-~~-~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT-GN-E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecC-Cc-c
Confidence 4678999999999899999999999999999977665555 5899999999997 45799999999999999997 33 3
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
..+-.|...|.||.+.+... .+++|++|++|++||.+...++..+.... .|.|++. .+..+..++.+..+.+||.+.
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v-~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV-SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCc-eEEEEec-cCCEEEEeecCceEEEEEccc
Confidence 45556999999999998755 45599999999999999866666665544 7888874 455777888999999999775
Q ss_pred ccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 797 INANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.......+.. ......-++.+.+ +..-+++++-||.|.|=
T Consensus 165 ~~~~~q~reS-----~lkyqtR~v~~~p-n~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 165 LDEPFQRRES-----SLKYQTRCVALVP-NGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccchhhhccc-----cceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence 4333211111 0111112234445 45667889999988763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-13 Score=148.99 Aligned_cols=282 Identities=27% Similarity=0.344 Sum_probs=194.1
Q ss_pred CCCCCcceEEEecCCCeEeecC---CCeEEeCCCCc-hhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLE-LRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~-~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vw 620 (847)
.+......+.+.+++..++..+ ...+|+..... ....+..... ..+ ..+... ..+. ....++.+++|
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSV-SKLALS-SPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-Cce-eeEEEE-CCCcceEEeccCCCCccEEEE
Confidence 3444566778888888877655 34789988775 2222111100 001 111111 1111 34458899999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATS 698 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasg 698 (847)
|+.. .......+..|...|.+++|+++++.+++++. |+.|++|++..+..+..+.+|...|.+++|+|++. .++++
T Consensus 140 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9986 13677788899999999999999999999886 99999999999899999999999999999999998 55555
Q ss_pred eCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEEeeCCceEEEEEecC
Q 003106 699 SFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~~~~~~~v~~~~~~~ 776 (847)
+.|+.|++||... +..+. .+.+|...+ ...|++++. ++++++.|+.+++||++.... +..+..|...+.++.+.+
T Consensus 218 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 8999999999986 66666 688888876 448999984 566899999999999997765 555556677788777665
Q ss_pred -CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE-eCCCeEEEEEccC
Q 003106 777 -RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGDSSLSSFIAGT 846 (847)
Q Consensus 777 -~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~DG~V~vW~~gt 846 (847)
...+..+..++.+.+|+........... ...+.. .+..+.+ ..+...++.+ ..|+.+++|++..
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEG----PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCC----ceEEEEE-CCCCCEEEEeecCCCcEEeeecCC
Confidence 4555556777778999644322211111 011111 2222333 2222344444 7889999998754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=149.07 Aligned_cols=270 Identities=18% Similarity=0.200 Sum_probs=194.5
Q ss_pred ceEEEecCCCeEee-cC--CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCCceee
Q 003106 557 PLMMFGTDGAGTLT-SP--SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 557 ~~v~~s~dG~~~~~-~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~~~~~ 629 (847)
....|.|-+..++. -+ ...+|+.+.+.+.+..+-+... .. +.|. +-+..++ ++..+|.|.||+..+. +
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~-ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~---~ 278 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKR-EK-KFVLCVTFLENGDVITGDSGGNILIWSKGTN---R 278 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccc-cc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCc---e
Confidence 45577776665433 33 3378999988776654433222 22 3333 3344444 8899999999999655 4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEE-----------------------
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTN----------------------- 675 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------~~~~----------------------- 675 (847)
.......|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+ .+++
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 4444559999999999999987665 9999999999832100 1111
Q ss_pred ------EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 676 ------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 676 ------l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
..+|.+..+.++.+|+.+.|++++.|+.|++|+ + .+.+.+ +....++.|++|+|.| .++.|...|...
T Consensus 358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWF 431 (626)
T ss_pred CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEE-EEecCceeEeeccCcc--eEEEeeccceEE
Confidence 235788889999999999999999999999999 2 222222 2345789999999998 677999999999
Q ss_pred EEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 750 YWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
|.|.++...+..-. ....+.++.+.. ...+..++.++.|++|.... +...+...+......++...|+. +..
T Consensus 432 V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-~g~~y~r~~k~~gs~ithLDwS~-----Ds~ 504 (626)
T KOG2106|consen 432 VLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-NGRKYSRVGKCSGSPITHLDWSS-----DSQ 504 (626)
T ss_pred EEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECC-CCcEEEEeeeecCceeEEeeecC-----CCc
Confidence 99999955544444 477888888774 45777888999999997553 33344444544447777777873 688
Q ss_pred EEEEEeCCCeEEEEEcc
Q 003106 829 CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~g 845 (847)
+|.+-+.|-.|.+|+.+
T Consensus 505 ~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPS 521 (626)
T ss_pred eEEeccCceEEEEEccc
Confidence 99999999999999653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=160.77 Aligned_cols=235 Identities=17% Similarity=0.273 Sum_probs=183.5
Q ss_pred CCCCCcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC-------CCCCCCcEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-------TDPRDAGGRG 619 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-------t~~~d~~v~v 619 (847)
.+.....+++.+|||.+++++. ..+++|+...+..-.++. ++..|.+. ++... ++++|..|+|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA------HesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA------HESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec------ccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 3445567899999999998864 449999987665443322 23233332 23222 7899999999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEccC-----CCCeEEEEEcCCC
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEH-----SSLITDVRFSPSM 692 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-----~~~I~~v~fsp~~ 692 (847)
+|+... +..+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.........|..| ...+++++..|+.
T Consensus 531 ~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 531 YDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred Eecccc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 999764 56788999999999999999877 78999999988765443322222223222 3568999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEecc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++++++.|..|+|||+.+ ++.++.|++ |.+....|...|.|-++ ++...|++|.|+|+-+|+|+....+|...|
T Consensus 609 k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~-atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYL-ATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred ceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEE-EEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 9999999999999999998 888888875 66778889999998755 466669999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNR-PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~-~~l~~~~~~g~i~i~d~~ 795 (847)
+.+.|.++ ..+...+.||+|.+|...
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECc
Confidence 99988765 457899999999999843
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=177.25 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=176.9
Q ss_pred CcceEEEecCCCe---EeecC-C---CeEEeCCCCchhhccccccccCCCCCceEEeeec-C-----CCCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAG---TLTSP-S---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-D-----DTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~---~~~~~-~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~-d-----~t~~~d~~v~vwd 621 (847)
.-.-++|++.|.. +++++ . +-|||.........+..+.....+.+.|...... . .+|+.+|.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 3456788877776 34433 3 3789987642222222222333344444432111 1 1788999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCC--CeEEEEEcCCCC-EEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMP-RLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~--~I~~v~fsp~~~-~Las 697 (847)
+.+-.+-.... -....+.|.||+|+. ....|++++.+|++.|||++..+.+..+..|.. .+..|.|+|+.. .|++
T Consensus 146 lnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 146 LNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred cCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 98742111111 123567899999997 567899999999999999998888888876655 477899999864 6666
Q ss_pred EeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 698 SSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 698 gs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
++.|. .|.+||+|.....++++.+|...|.+|+|++.+.++++||+.|+.|.+|+.++++.+..+.....++..+.+
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 66544 599999998888899999999999999999998889999999999999999999999999998888888887
Q ss_pred cCCC--EEEEEcCCCcEEEEcCC
Q 003106 775 MNRP--CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 775 ~~~~--~l~~~~~~g~i~i~d~~ 795 (847)
..+. .+...+-+|.|.|+...
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCcchhhhheeccceeeeeee
Confidence 7543 45566678888887743
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=147.57 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=150.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-----
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT----- 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~----- 684 (847)
.+..+|.+-+||+.+. ...+.+.+|..+|+|++|++||++|+|+|.|..|++||+..+.+++.+. ..++|+
T Consensus 40 vGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~h 115 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWH 115 (405)
T ss_pred eeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeec
Confidence 6788999999999854 5677789999999999999999999999999999999999887766643 112222
Q ss_pred ------------------------------------------EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC
Q 003106 685 ------------------------------------------DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722 (847)
Q Consensus 685 ------------------------------------------~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h 722 (847)
+..|.+.|++|++|...|.+.|+|..+ .+++..++-.
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch-heeeeeeeec
Confidence 222555789999999999999999998 6778777655
Q ss_pred C-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------CceE--EEEe--eCCceEEEEEecCC-CEEEEEc-CCCc
Q 003106 723 S-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCT--RVFK--VESFCCWCVNAMNR-PCLWDKL-DAGD 788 (847)
Q Consensus 723 ~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-------~~~~--~~~~--~~~~~v~~~~~~~~-~~l~~~~-~~g~ 788 (847)
. ..|..|.|+..|+.++ ..+.|..||.|+++. ++.. +.+. .....-.++.++++ .++..++ ....
T Consensus 195 s~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccccee
Confidence 5 7899999999988655 778899999999873 1111 1111 01111112333333 3333333 3345
Q ss_pred EEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 789 IQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 789 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++|+....+...+.. ...+.......|+ + -..++++- ..|+|+||.+.
T Consensus 274 LYIWE~~~GsLVKILh--G~kgE~l~DV~wh----p-~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILH--GTKGEELLDVNWH----P-VRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEEEecCCcceeeeec--CCchhheeecccc----c-ceeeeeec-cCCceEEEEee
Confidence 8999866443322221 1122333334455 3 23345555 78899999763
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=154.71 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=171.7
Q ss_pred CCCCCCcEEEEeccC-CceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--eEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQ-GFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~I~~ 685 (847)
.+...|.|-+||+.+ ......+..+..|...|.+|.|+| +-..|++.|.||+|++-|+++... +..+......+.+
T Consensus 205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~ 284 (498)
T KOG4328|consen 205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS 284 (498)
T ss_pred EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence 466778999999953 223445667789999999999999 567899999999999999986543 3344335566788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc----eEEE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRV 761 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~----~~~~ 761 (847)
+.|+.+...++.+..=|...+||.++++.....+.-|...|++|+++|...++|+||+.|++++|||+|.-. .+..
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 999988888888887779999999998877888888999999999999999999999999999999998632 2233
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc---ccCCC----CccccccccccccCCCcEEEEE
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG---WYGSD----EIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~---~~~~~----~~~~~~w~~~~~~~~~~~l~sG 833 (847)
...|...|.+..|.. ...+++.+.+..|+|||...+... ++..+ +.... ...-..|+ + +..+|++|
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~----P-~~~li~vg 438 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWD----P-DYNLIVVG 438 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeeccCcccccccchhheeC----C-CccEEEEe
Confidence 346777787776653 345889999999999997422211 11111 11111 11223455 4 67889999
Q ss_pred eCCCeEEEEEc
Q 003106 834 CGDSSLSSFIA 844 (847)
Q Consensus 834 s~DG~V~vW~~ 844 (847)
-.-..|-||+.
T Consensus 439 ~~~r~IDv~~~ 449 (498)
T KOG4328|consen 439 RYPRPIDVFDG 449 (498)
T ss_pred ccCcceeEEcC
Confidence 99888998875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=147.26 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=133.7
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEc--cCCCCeEEEEEcCCCCEE-EEEeCCCcEE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRL-ATSSFDKTVR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~--~h~~~I~~v~fsp~~~~L-asgs~Dg~V~ 705 (847)
+..+++|.+.|+|++|+.||++|+|++.|++|+||+++..... +.++ -.-+.-+.|+|.||.+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4467899999999999999999999999999999999864221 1111 112346889999998765 4455567899
Q ss_pred EEECCCC--Cc-e--------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 706 VWDADNP--GY-S--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 706 iWD~~~~--~~-~--------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
+|.+... +. . +..-+.|...|..+-....+. ++++|+.|.+|.+||++ |..+..+...-...+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9977531 11 1 111134555666666655554 67799999999999999 8877777654333332333
Q ss_pred cC-CCEEEEEcCCCcEEEEcCCcccceeeecc-ccc----CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 775 MN-RPCLWDKLDAGDIQISDSLFINANIFCGL-GWY----GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 775 ~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~-~~~----~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+ +..+....-.-.+.+|+..+.....+... ... +...+....++ .+...+++.+.||++||||..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-----CCcceeEEEecCCcEEEeecc
Confidence 32 23344444556678887554333222111 111 22223332222 256789999999999999863
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=134.98 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=171.0
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCch---hh-ccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccCCce---
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLEL---RA-DMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQGFS--- 627 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~---~~-~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~~~~--- 627 (847)
+++|.++++++++.. .+..+..... .. .-..++..-.+|+.+-....+|+ ..+.||.|+-|.......
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhcc
Confidence 567778877776654 3444432211 11 11122333445555555555555 455668898887654311
Q ss_pred eeEeEEe--ecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 628 FKEANSV--RAST-----SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 628 ~~~~~~l--~~h~-----~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
.+++..+ .-|. -.|+++-+.|..+-|++++.|+.++-||+++|+..+++++|++.|.||.-......+++|+.
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence 1111111 1122 35889999998888888889999999999999999999999999999998666678999999
Q ss_pred CCcEEEEECCCCCceEEEecc---------C-CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 701 DKTVRVWDADNPGYSLRTFMG---------H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~---------h-~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
||+|||||+++ .+++.++.. | ...|.+++.+.+ .+++| ....+.+|.++..+++.+|...... .
T Consensus 177 DGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCG-gGp~lslwhLrsse~t~vfpipa~v-~ 250 (325)
T KOG0649|consen 177 DGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCG-GGPKLSLWHLRSSESTCVFPIPARV-H 250 (325)
T ss_pred CccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccCc---eEEec-CCCceeEEeccCCCceEEEecccce-e
Confidence 99999999999 666666532 2 234667776644 45344 4578999999999988888765543 3
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+.|.. .++..+..+.++.-|..... +....-.++...+...|... + -.+|-.++....+.|++.
T Consensus 251 ~v~F~~-d~vl~~G~g~~v~~~~l~Gv----l~a~ip~~s~~c~s~s~~~~--p--~k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 251 LVDFVD-DCVLIGGEGNHVQSYTLNGV----LQANIPVESTACYSASWQTS--P--IKFISIAGFSNKLHILKD 315 (325)
T ss_pred Eeeeec-ceEEEeccccceeeeeeccE----EEEeccCCccceeeecccCC--c--eEEEEecccceeeeeeec
Confidence 333333 35556666777777653311 11111123334455556532 1 234555666777777653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=147.19 Aligned_cols=274 Identities=14% Similarity=0.206 Sum_probs=185.9
Q ss_pred CCCCcceEEEecC--CCeEeec-C-CC---eEEeCCCCchhhccccccccCCCCCc-eEEeeecCC---CCCCCCcEEEE
Q 003106 552 GTTSKPLMMFGTD--GAGTLTS-P-SN---QLWDDKDLELRADMDRLVEDGSLDDN-VESFLSHDD---TDPRDAGGRGM 620 (847)
Q Consensus 552 ~~~~~~~v~~s~d--G~~~~~~-~-~~---~iWD~~~~~~~~~~~~~~~~g~~d~~-v~~~~s~d~---t~~~d~~v~vw 620 (847)
....+..++|++- |..+++- . .. .+||-..+....+.... -+.. ...|...|. .....+.+..|
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 3445678888864 3344332 2 22 67888766544432211 0001 111222222 22346778899
Q ss_pred eccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 621 DVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
+.+++...+....++.+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|. |++|+
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGg 305 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGG 305 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecC
Confidence 999986667777776554 5699999999875 78999999999999998888877779999999999999996 45599
Q ss_pred CCCcEEEEECCCC-----------Cc----------------------------eEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 700 FDKTVRVWDADNP-----------GY----------------------------SLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 700 ~Dg~V~iWD~~~~-----------~~----------------------------~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
.|..|..||-.-. +. ...+..+|.+..+.++.+|+.. +++
T Consensus 306 KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~ 384 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLL 384 (626)
T ss_pred ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-hee
Confidence 9999999983210 00 0112236888899999999966 666
Q ss_pred EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccc
Q 003106 741 SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKV 820 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~ 820 (847)
+|+.|+.|++|+ ..+.+.+. .-...+.|+.+.....+..+...|...+.|........+.. ....+.+..++
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~ys- 456 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVRYS- 456 (626)
T ss_pred eccCcceEEEcc--CCceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe----cCCceEEEEEc-
Confidence 999999999999 33333222 33445677777777789999999999888865422111111 12233333333
Q ss_pred ccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 821 SCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 821 ~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++.+|++|+.|+.|+||.+.
T Consensus 457 ----p~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 457 ----PDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ----CCCCEEEEecCCCeEEEEEEC
Confidence 378999999999999999873
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=155.13 Aligned_cols=287 Identities=16% Similarity=0.212 Sum_probs=197.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhcccc--cccc-------------CCCCCceEEeeecCC---
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDR--LVED-------------GSLDDNVESFLSHDD--- 609 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~--~~~~-------------g~~d~~v~~~~s~d~--- 609 (847)
.|...+.++...+.|.+++.++.+ +||.+.++.++..+.. .+.+ .....+ .++....
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~--~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC--VLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc--eEEeCccccc
Confidence 344556788888999999998766 7999999977654321 0000 000011 1111111
Q ss_pred ----------------CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 003106 610 ----------------TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT 669 (847)
Q Consensus 610 ----------------t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~ 669 (847)
....++.+..|.-..... .+-+...-.|...|+.|.|+..|.||+|..-| ..|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 122344555676442211 11234445689999999999999999998764 4799999987
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.+...-|....+.|.++.|+|...+|++++ -..|||||+.. ...++++......|.+++.||.|.++| .++.|+.++
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~ 632 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMC 632 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeE
Confidence 777667766778899999999999988887 56799999987 666777766677899999999999887 888999999
Q ss_pred EEECCCC-ceEEEEeeCCceEEEEEecCCCEEE-EEcCCCcEEEEcCCcc----cceeeecccccCCCCc--cccccccc
Q 003106 750 YWSINNG-SCTRVFKVESFCCWCVNAMNRPCLW-DKLDAGDIQISDSLFI----NANIFCGLGWYGSDEI--PAPSWKVS 821 (847)
Q Consensus 750 iWD~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~--~~~~w~~~ 821 (847)
.||+.-. +..+++..|...++.+++....-++ +++++|.+.||...-. ...++.......+... ...+.+..
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 9999854 5778899999999999988776555 5667799988763211 1122222222111111 12233333
Q ss_pred cccCCCcEEEEEeCCCeEEEEE
Q 003106 822 CRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+++ ....|++++.||+|++|.
T Consensus 713 wHP-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 713 WHP-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccC-CCceEEecCCCceEEeeC
Confidence 445 577899999999999993
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=151.85 Aligned_cols=212 Identities=17% Similarity=0.306 Sum_probs=145.5
Q ss_pred EEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC----------------
Q 003106 618 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS---------------- 681 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~---------------- 681 (847)
.+||...| ..+.++++|++.|+|++|+.||++||+|+.|+.|.||.-.-...+ .+ .|.+
T Consensus 36 liyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 36 LVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLAS 110 (1081)
T ss_pred EEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhh
Confidence 34555544 466778999999999999999999999999999999985421111 11 2333
Q ss_pred -----------------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCCCCeEEEEEecCCC
Q 003106 682 -----------------------LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKD 736 (847)
Q Consensus 682 -----------------------~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~ 736 (847)
.|.+++|..||.+|+.|-.||+|.|-+... ...+ ....|..+.|++|+|+|...
T Consensus 111 CsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred cchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC
Confidence 455666666899999999999999886553 2222 22345778999999999632
Q ss_pred ----eEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCC
Q 003106 737 ----DLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD 811 (847)
Q Consensus 737 ----~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 811 (847)
.+++..+...++.+|.+. |+.+..-+.-.....|+.+ .++..+..+..++.+.+|....+ .....+
T Consensus 190 ~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rLGTvg----- 260 (1081)
T KOG1538|consen 190 EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RLGTVG----- 260 (1081)
T ss_pred CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EEeecc-----
Confidence 467777888888888776 4434333333333445543 46667778888888888764322 121111
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....-+|.+..++ ++..++.||-||+|..|.+.
T Consensus 261 ~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEcc-CCceEEEEEccCeeehhhhH
Confidence 1334578888777 78999999999999998763
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=147.35 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=147.2
Q ss_pred eeecCC----CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeE
Q 003106 604 FLSHDD----TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKT 674 (847)
Q Consensus 604 ~~s~d~----t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~ 674 (847)
|..+++ +++.|.+|.||.+-.+. ..+++..+.+|...|.-++|+| -.+.|++++.|.+|.|||+.+++.+.
T Consensus 89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali 168 (472)
T KOG0303|consen 89 WCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI 168 (472)
T ss_pred cCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee
Confidence 444444 78899999999987652 2356788999999999999999 45789999999999999999999998
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEe---CCCcEEE
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCD---GDGEIRY 750 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s---~Dg~V~i 750 (847)
++. |.+.|+++.|+.||.+|++.+.|+.|||||.++ +..+..-.+|.+ .-..+.|-.+|. ++.||- .+..|-+
T Consensus 169 ~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 169 TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL 245 (472)
T ss_pred ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence 887 999999999999999999999999999999998 777877777865 345677888877 664553 3678999
Q ss_pred EECCCCc---eEEEEeeCCceEEEEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 751 WSINNGS---CTRVFKVESFCCWCVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 751 WD~~~~~---~~~~~~~~~~~v~~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
||..+-+ ....+....+.+.-+. .+....+++|..|+.|+.|+..
T Consensus 246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 9987643 3334444444333322 2334455678889999998844
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=148.88 Aligned_cols=206 Identities=19% Similarity=0.280 Sum_probs=148.3
Q ss_pred cCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 003106 636 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 636 ~h~~~V~~l~fspdg----~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~ 710 (847)
.|......|+|+-|. .+||.||.-|.|+|.|+.++++...+.+|...|+.|.|+|+. .+|+++|.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 366777888888743 478999999999999999999999999999999999999986 578999999999999999
Q ss_pred CCCceEEEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------eEEE--------------------
Q 003106 711 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRV-------------------- 761 (847)
Q Consensus 711 ~~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------~~~~-------------------- 761 (847)
+ ..++..| .||.+.|.+|+|+.+|.+ +++|+.|..|++|++...+ +...
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 7888877 579999999999999984 5699999999999998432 1111
Q ss_pred --EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee-------ecccccCCCCcccccccccc--ccCCCcEE
Q 003106 762 --FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF-------CGLGWYGSDEIPAPSWKVSC--RSCRECCL 830 (847)
Q Consensus 762 --~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~w~~~~--~~~~~~~l 830 (847)
-..|...|.|+.+.. ..+++.+.++.|..|........+. +.............+|-+.+ .+ -..+|
T Consensus 245 st~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKML 322 (385)
T ss_pred cccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHH
Confidence 112344444544444 4556666777888887421111100 00000111122334555443 22 25679
Q ss_pred EEEeCCCeEEEEEcc
Q 003106 831 YTGCGDSSLSSFIAG 845 (847)
Q Consensus 831 ~sGs~DG~V~vW~~g 845 (847)
+.|...|.|.+|++.
T Consensus 323 a~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLD 337 (385)
T ss_pred hhccCCCcEEEEECC
Confidence 999999999999985
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=144.19 Aligned_cols=206 Identities=19% Similarity=0.295 Sum_probs=149.8
Q ss_pred CCCCCcceEEEecCCCe----EeecCCC--eEEeCCCCchhhccccccc---cCCCCCceEEeeecC------CCCCCCC
Q 003106 551 SGTTSKPLMMFGTDGAG----TLTSPSN--QLWDDKDLELRADMDRLVE---DGSLDDNVESFLSHD------DTDPRDA 615 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~----~~~~~~~--~iWD~~~~~~~~~~~~~~~---~g~~d~~v~~~~s~d------~t~~~d~ 615 (847)
.+.-+.+-+.|.||... +++...+ |||.+...+........+. ...+...+..|.... ++.+.|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 34445567788888642 3343333 9999985332222221111 111222333332221 2788899
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPS 691 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~ 691 (847)
+..|||++++........+-+|...|.+|+|..++ ..||++|.||.||+||++..+.-..+. ....+..-++|++.
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999999986666677788999999999999855 478999999999999999765543332 22456788888885
Q ss_pred C-CEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 692 M-PRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 692 ~-~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
. +++|+-.. ...|.|.|+|.+...+..+.+|.+.|+.|+|.|.....++||+.|..+.|||+...
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 4 56777654 45699999999999999999999999999999999999999999999999999753
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=154.16 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=184.4
Q ss_pred CCeEEeCCCCchhhccccccccCCCCCceEEeeecC----CCCCCCCcEEEEeccCCc-eeeEeEEeecCCCCEEEEEEc
Q 003106 573 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFS 647 (847)
Q Consensus 573 ~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d----~t~~~d~~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fs 647 (847)
..+|||+.+.+...++........ ..-.+|.... .+.+.|+.+++|.-.... +...+....+ +.-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhh
Confidence 348999998877766544332211 1222232222 256778899999865431 1222233333 345566666
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCe
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 726 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V 726 (847)
....++++|+..++|+|||++...+.+.+++|.+.|++|.++....+||+++..|.|.|..+.+ +....+|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 6668999999999999999998788888999999999999999999999999999999999998 5555556433 4556
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeCCceEE--EEEecCCCEEEEEcCCCcEEEEcCCcccceeee
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVESFCCW--CVNAMNRPCLWDKLDAGDIQISDSLFINANIFC 803 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~~~~v~--~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~ 803 (847)
.-|.|++..+.+|.+++.+|.|.+||+.....+..+ +.|...+. |++..+...+.+..-|+.|.+||...... ..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--TD 245 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--cc
Confidence 799999999999999999999999999987777655 45665554 44455677888999999999999663221 11
Q ss_pred cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 804 GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 804 ~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
...+ ..... .+++.+ .+.+|+.|...|.|..||+.
T Consensus 246 ~l~y--~~Pls----tvaf~~-~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 246 RLTY--SHPLS----TVAFSE-CGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred eeee--cCCcc----eeeecC-CceEEEeecCCceEEEEecc
Confidence 1111 11111 133344 47889999999999999985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=148.44 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=112.7
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------Cc--------------eeEEEccCCCCeEEEEE
Q 003106 638 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT--------------LK--------------SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~--------------~~--------------~~~~l~~h~~~I~~v~f 688 (847)
+..|+|+.|-| +...|+.+-.+|.+++||..- +. ++..+....+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999 445666677899999997531 00 11111123457889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+|||++||+.+.||.+||||..+ .+.+..++.--+...||+|+|||+ +|++|+.|..|.||.+...+.+..=.+|..+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred cCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccc
Confidence 99999999999999999999998 666667777778899999999998 5569999999999999999999999999999
Q ss_pred EEEEEecC
Q 003106 769 CWCVNAMN 776 (847)
Q Consensus 769 v~~~~~~~ 776 (847)
|..++|+.
T Consensus 377 Vs~VaFDp 384 (636)
T KOG2394|consen 377 VSVVAFDP 384 (636)
T ss_pred eeeEeecc
Confidence 99999885
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=157.34 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=182.4
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC--ce
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG--FS 627 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~--~~ 627 (847)
..+.|+|-..-++++... .+||...++....++.-......-...+.....|. +++.||.||||+-... ..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 345666666666655522 78999998876655543322222223333333333 7899999999995543 23
Q ss_pred eeEeEEeec-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcC-CCCEEEEE
Q 003106 628 FKEANSVRA-------STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP-SMPRLATS 698 (847)
Q Consensus 628 ~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp-~~~~Lasg 698 (847)
.+.+..+.+ -.+.=.-++|.-...+|+++|+-..|+|||+++..++..+.. ....|+++.-+- .|+.|++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 333333222 111223456766555666666688999999998887777653 345577765433 36899999
Q ss_pred eCCCcEEEEECCCCC--ceEEEeccCCCC--eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eC---CceE
Q 003106 699 SFDKTVRVWDADNPG--YSLRTFMGHSAS--VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VE---SFCC 769 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~--~~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~---~~~v 769 (847)
..||.||+||.|... ..+..++.|.+. |..+.+.+.|-.-|++|+.||.|++||+|.......+. .+ +..+
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 999999999998643 367788889888 99999999877667799999999999999853333222 22 2246
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+++.......+.+....+.|.||+........+.....+-+..+.. .-.+.+|+ ..-++++|+.|.+|.||..
T Consensus 1308 Tal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs-~scL~FHP-~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGS-VSCLAFHP-HRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred eeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCC-cceeeecc-hhHhhhhccCCceEEEeec
Confidence 7776655444444444499999996543333333222111111111 12233444 3567899999999999975
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-14 Score=157.55 Aligned_cols=181 Identities=22% Similarity=0.254 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
.+...|.|.++++.+|..-+....-..|.+.|+.++...-++.+++++.||.+++||..+...+..++ -...++++.++
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeee
Confidence 35568899999999883222222236899999999999888999999999999999999888777775 34568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.....++.+.+|-.|+++|+.+ .+.++.|.||.+.|++++|+|||++++ +++.|++||+||+.++.++..+.....++
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWli-sasmD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLI-SASMDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEE-EeecCCcEEEEeccCcceeeeEecCCcce
Confidence 9999999999999999999998 788999999999999999999999665 99999999999999999999888776655
Q ss_pred EEEEecCCCEEEEEcCC-CcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDA-GDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~-g~i~i~d 793 (847)
.--...+...+.+...+ ..|++|.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEE
Confidence 43333455667777666 5588886
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=153.26 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=145.2
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
.++.|+.|++|.+..+. ...+...+++|..+|+++.|+| -.+.|++++.|.+|+|||+.+++....|.+|.+.|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 67889999999998752 3345677899999999999999 567999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCC--ce
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNG--SC 758 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~--~~ 758 (847)
+++|+|+|+.+++.|.||+|+||.-+.....+..-++- ...--.|.|.-+|.+++++|-. ...|.+||..+- ..
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 99999999999999999999999999866666655432 2334467888888877766642 356889987753 23
Q ss_pred EEEE--eeC-CceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 759 TRVF--KVE-SFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 759 ~~~~--~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+. ... ...+.....+....+.++..|..|.+|+..+
T Consensus 805 l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 805 LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 3332 222 2234444555666777888888888888554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=144.32 Aligned_cols=143 Identities=29% Similarity=0.391 Sum_probs=118.0
Q ss_pred CCCCCCcEEEEeccCCc------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------C------
Q 003106 610 TDPRDAGGRGMDVSQGF------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T------ 669 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~------ 669 (847)
+++.|..|++|-+..+. ..+....+..|...|++|.|+|+|++||+|+++|.|.+|-.. +
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 56677777777766532 445667788999999999999999999999999999999654 2
Q ss_pred --CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 670 --LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 670 --~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
....+.+.+|...|..++|+|++.++++++.|..+++||+.. +..+..+.+|...|..++|.|.+.+ +++-+.|..
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~ 188 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRH 188 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhhh-hhhhccCcc
Confidence 334566778999999999999999999999999999999998 8888899999999999999998763 446666665
Q ss_pred EEEEECC
Q 003106 748 IRYWSIN 754 (847)
Q Consensus 748 V~iWD~~ 754 (847)
.+++++.
T Consensus 189 ~~~~~~~ 195 (434)
T KOG1009|consen 189 PEGFSAK 195 (434)
T ss_pred cceeeee
Confidence 5555553
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-15 Score=170.73 Aligned_cols=121 Identities=28% Similarity=0.555 Sum_probs=113.9
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
.+.++.+.+|...|+|+.|...|.+|++|++|..|+||.+++..++..+.+|.+.|++++.+.+..++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35667788999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+.+ +..+..+.+|++.|++|+|+|-. +.+.||+++|||.+
T Consensus 260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9998 88899999999999999999973 67789999999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-14 Score=152.32 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=151.8
Q ss_pred CCCCCCcEEEEeccC-----CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------C----CceeE
Q 003106 610 TDPRDAGGRGMDVSQ-----GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD------T----LKSKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~-----~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~------~----~~~~~ 674 (847)
++..++++++|++.+ ...++++.+|++|.++|.|+++.+++..+++|+.||+|+.|++. . .....
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 688899999999932 34688999999999999999999999999999999999999543 1 12345
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---------------------------------------
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS--------------------------------------- 715 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~--------------------------------------- 715 (847)
++.||.+.|+.+++|.....|++|+.||+||+|+......+
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 67899999999999999999999999999999987642110
Q ss_pred ----EEEecc-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEEEE
Q 003106 716 ----LRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLWDK 783 (847)
Q Consensus 716 ----~~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 783 (847)
+..+.. ....+..|.++|... +.+++..|+.|+++|..+++.++....|...+.+++++ ++.++..+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~ 549 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSG 549 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCCceEEee
Confidence 011100 113466778888886 55599999999999999999999999999999999876 56788899
Q ss_pred cCCCcEEEEcCC
Q 003106 784 LDAGDIQISDSL 795 (847)
Q Consensus 784 ~~~g~i~i~d~~ 795 (847)
..++.+.+|...
T Consensus 550 s~d~sv~l~kld 561 (577)
T KOG0642|consen 550 SHDGSVRLWKLD 561 (577)
T ss_pred cCCceeehhhcc
Confidence 999999999754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=136.52 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=171.1
Q ss_pred EeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCC-----
Q 003106 603 SFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT----- 669 (847)
Q Consensus 603 ~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~D-------g~V~vwd~~~----- 669 (847)
+|+..-.+--.|.-|.+.++..+...-....|..|.+.|..|+-+| |.++|+|+-.| ..+.||.+..
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 3444333445567778877776544445566788999999999999 66777777543 2478998763
Q ss_pred ----CceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-----cCCCCeEEEEEecCC-CeE
Q 003106 670 ----LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNK-DDL 738 (847)
Q Consensus 670 ----~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-----~h~~~V~sl~fsp~g-~~l 738 (847)
.+++..+. .+-+.|.||.|.|++..|++-. |..|.+|++....+.+..+. +|....++-+|+|.. .+.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 23344444 4556899999999999998877 88999999987544344332 355678888999932 234
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEe-eCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFK-VESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPA 815 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 815 (847)
+ ....|+++..||+|+.++...+. .|...|..+.+... ..+.++.++|.|++||.+.....+....+ ..-
T Consensus 187 v-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~------HsH 259 (370)
T KOG1007|consen 187 V-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG------HSH 259 (370)
T ss_pred E-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC------Cce
Confidence 4 34458999999999988776665 56677888887644 46778899999999998765554443332 344
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
-+|.+.+++..+.+|++|+.|..|.+|-.+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEecc
Confidence 589999999999999999999999999764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=141.46 Aligned_cols=225 Identities=27% Similarity=0.328 Sum_probs=168.7
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CceeEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHF-SSDGK-LLATGGH-DKKAVLWHTDT-LKSKTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~V~vwd~~~-~~~~~~l~~h~~~I~~ 685 (847)
++.++.+.+|+...+. ..+..+..+. ..+..+.+ ++++. +++..+. |+.|++||... ...+..+..|...|.+
T Consensus 83 ~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 160 (466)
T COG2319 83 GSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS 160 (466)
T ss_pred ecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEE
Confidence 3468899999998773 3455555533 37777777 78887 5555455 99999999998 7888889999999999
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEe
Q 003106 686 VRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFK 763 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~ 763 (847)
++|+|++..+++++. |+.+++|++.. ...+..+.+|...|.+++|+|++..++++++.|+.|++||...+.++. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~ 239 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC
Confidence 999999998888885 99999999997 778888888999999999999987566566899999999999888887 677
Q ss_pred eCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 764 VESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 764 ~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.+...+ ...+... ..+..+..++.+.+|+........... ..+...+... .+.+ .+..+++++.|+.+++|
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~----~~~~-~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSV----AFSP-DGKLLASGSSDGTVRLW 311 (466)
T ss_pred CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEE----EECC-CCCEEEEeeCCCcEEEE
Confidence 776653 2233332 466689999999999966444311111 1122222222 2334 46667779999999999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
+..+
T Consensus 312 ~~~~ 315 (466)
T COG2319 312 DLET 315 (466)
T ss_pred EcCC
Confidence 7753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=151.67 Aligned_cols=164 Identities=22% Similarity=0.324 Sum_probs=130.9
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTVRV 706 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~i 706 (847)
....+.+|.+.|+|++|+.||.+|++|++|-.|.|||.-..++++.+. +|...|.|+.|-|. .+.+++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445678999999999999999999999999999999998888877764 89999999999985 457899999999999
Q ss_pred EECCC---------CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEee---------CCc
Q 003106 707 WDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKV---------ESF 767 (847)
Q Consensus 707 WD~~~---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~---------~~~ 767 (847)
||+.. .......+..|...|..|+..|++.+.|.+++.||+|+-+|++... |...... .-.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2344566778999999999999998899999999999999999732 2211111 112
Q ss_pred eEEEEE--ecCCCEEEEEcCCCcEEEEc
Q 003106 768 CCWCVN--AMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 768 ~v~~~~--~~~~~~l~~~~~~g~i~i~d 793 (847)
...|+. .....++..|..+-..++||
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhh
Confidence 233333 34556777888887788887
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=147.46 Aligned_cols=280 Identities=14% Similarity=0.140 Sum_probs=193.6
Q ss_pred CCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCC-ce-
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS- 627 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~-~~- 627 (847)
..+....|...+..+++++..+.|+-.+.++...+....- ...|........ ....++.+.+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~-----~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLH-----GAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEeccc-----cceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 3344555677788888877777766666554433221111 012222222111 4567888999998874 11
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
...+..++...+.|+++ ++|+. +.|+.|+.+|.+.||++++++.+.++.++.+.|+++.=+|--+.++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 11122223333337776 45643 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-eCCceEEEEEec-CCCEEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-VESFCCWCVNAM-NRPCLWDK 783 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~ 783 (847)
|++++. ++.+.+|+-..+.|++++|..||..++++++..|.+.+||++..+.+..+. .|...+....+. +...+.+.
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 888999975469999999999999999999999999999999988877766 565555555443 55667777
Q ss_pred cCCCcEEEEc--CCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 784 LDAGDIQISD--SLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 784 ~~~g~i~i~d--~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..|..+++|- .......++. +.|+ ..... .+.+....+.++.+++.|++++.|.+.
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~----~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPS----CIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCC--CCCch----heeeeccCcEEEEecccCcchhhhhhh
Confidence 7777776664 2222222221 2222 11111 223333467789999999999888753
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=149.73 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=145.7
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC--EEEEEeCCC---
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK--- 702 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~--~Lasgs~Dg--- 702 (847)
..+...+++|++.|+||...|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.||+|+|.++ .||++-.+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34556789999999999999999999999999999999999999998864 344677777777544 222222111
Q ss_pred ------------------------------------------------------------------------------cE
Q 003106 703 ------------------------------------------------------------------------------TV 704 (847)
Q Consensus 703 ------------------------------------------------------------------------------~V 704 (847)
.|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 12
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
.|+++.. .....-|....+.|.++.|+|...++|++. -..|+|||+...+.++.+.....++..++... +..++.+
T Consensus 549 liHQLSK-~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSK-RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEeccc-ccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 2222221 111122223456799999999988777444 46899999999988888888888998888664 5678889
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+..+|.......+. . ..++...++.+.++ . .-.+|++|+.||+|.||.--
T Consensus 626 s~d~k~~WfDldlsskPyk-~-lr~H~~avr~Va~H----~-ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYK-T-LRLHEKAVRSVAFH----K-RYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred cCCCeeEEEEcccCcchhH-H-hhhhhhhhhhhhhc----c-ccceeeeecCCCcEEEEeee
Confidence 9999999999765433222 1 12233444443333 3 45679999999999998653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=129.52 Aligned_cols=161 Identities=15% Similarity=0.190 Sum_probs=118.4
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEE--ccCC-----CCeEEEEEcCCCCEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNL--EEHS-----SLITDVRFSPSMPRL 695 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------~~~l--~~h~-----~~I~~v~fsp~~~~L 695 (847)
..+..+.+|.++|+.++|. ..+|++|+ ||.|+-|....... +..+ .-|. -.|+++-..|..+-|
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 3455568999999999998 34777776 59999997653211 1111 1222 358999999988888
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----------
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---------- 765 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---------- 765 (847)
+.++.|+.++.||+++ +...++++||++.|.+|.-......+| +|+.||+|||||+++++++..+...
T Consensus 130 ~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 8888999999999999 899999999999999999854444455 9999999999999999999887642
Q ss_pred CceEEEEEecCCCEEEEEc-CCCcEEEEcCCcc
Q 003106 766 SFCCWCVNAMNRPCLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 766 ~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~~~ 797 (847)
..++.+++.+.+ |..+ .+..+.+|+....
T Consensus 208 g~wigala~~ed---WlvCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 208 GKWIGALAVNED---WLVCGGGPKLSLWHLRSS 237 (325)
T ss_pred CceeEEEeccCc---eEEecCCCceeEEeccCC
Confidence 334555553332 3333 3445788886543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=130.07 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=164.3
Q ss_pred CCCCCCcEEEEeccCCc-eeeEeEEe-----ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc---eeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGF-SFKEANSV-----RASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK---SKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~-~~~~~~~l-----~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h 679 (847)
-+..+..+|+|.+.... .+.+...+ ..+..++++..|+. |-++|.+++-|.++.|||++++. +...+.+|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 56677889999988531 22222222 34677899999998 78899999999999999999763 45667899
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC
Q 003106 680 SSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGD-GEIRYWSINN 755 (847)
Q Consensus 680 ~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~ 755 (847)
...|.+|+|...+. .||+++.||.||+||+|........++.- ..+...++|++...+++++-..| ..|.|.|+|.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 99999999998664 78999999999999999855544444432 46788999999888888876655 6799999997
Q ss_pred C-ceEEEEeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc-eeeec-ccccCCCCccccccccccccCCCcEE
Q 003106 756 G-SCTRVFKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA-NIFCG-LGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 756 ~-~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
. ..+..+..|...|..+++. ....+.++.++..+.+||...... ..... ..+.....+.-..|. +.....|
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws----~~~~Dwi 351 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS----SSQPDWI 351 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeec----ccCCCEE
Confidence 4 5788999999999988765 456788888999999999653322 22222 223344455555565 4445566
Q ss_pred EEEeCC
Q 003106 831 YTGCGD 836 (847)
Q Consensus 831 ~sGs~D 836 (847)
+++.+.
T Consensus 352 ai~~~k 357 (364)
T KOG0290|consen 352 AICFGK 357 (364)
T ss_pred EEEecC
Confidence 665443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=136.95 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=167.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
.|+.-+..+.|+.+|++++.++.+ ++|.++..-... +
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------------~ 93 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------------T 93 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------------C
Confidence 455567788999998888887776 567665332111 1
Q ss_pred eeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 628 FKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+++.... .|...|.|++|....++|++|+.+++|.+-|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|
T Consensus 94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV 173 (609)
T ss_pred CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence 23333332 4668999999999999999999999999999999988877742 23489999999999999999999999
Q ss_pred EEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEe---e----CCceEEEEEe
Q 003106 705 RVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---V----ESFCCWCVNA 774 (847)
Q Consensus 705 ~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~---~----~~~~v~~~~~ 774 (847)
.+||++..... +..+.......+++.|+|....||++.+..+-+.+||++... .+.... + ...+......
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 99999873312 222333456788999999999999999999999999998653 221111 1 1222333344
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecc----cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGL----GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+...+.+......-.+||.......++... ++.....+.+.++ .+...+++|+.|--|.+|++
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEec
Confidence 4555566666666555565433222222221 2222222222111 13455999999999999987
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=148.17 Aligned_cols=221 Identities=19% Similarity=0.176 Sum_probs=161.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--eEE----EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~----l~~h~~~I~~v~ 687 (847)
+.+.+|++.... .+...+ .....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.
T Consensus 222 ~~~~vW~~~~p~--~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCC--CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 378899998762 222222 3567899999999 778899999999999999986544 222 236889999999
Q ss_pred EcCCCC--EEEEEeCCCcEEEEECCCC--------------------------------------------Cce------
Q 003106 688 FSPSMP--RLATSSFDKTVRVWDADNP--------------------------------------------GYS------ 715 (847)
Q Consensus 688 fsp~~~--~Lasgs~Dg~V~iWD~~~~--------------------------------------------~~~------ 715 (847)
|..+.. .|++++.||.|+.|+++.. |.+
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 977644 4999999999999998742 000
Q ss_pred ------------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEEEecC--CCEE
Q 003106 716 ------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCVNAMN--RPCL 780 (847)
Q Consensus 716 ------------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~~~~~--~~~l 780 (847)
+..+..|.+.|++|.++|-+..+|++++ |.+|+||... ...++..+..+...+.++++.. ...+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 1122346788999999999888887777 8999999988 6667777777777788777653 4567
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++..+|.+.+||............... ....+...|. ..+.+|++|...|.|.+|++.
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWS-----PNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEcCCCceehhhhhccccCCccccccc-ccccceeecC-----CCCcEEEEecCCCcEEEEEcC
Confidence 7888899999999654433333222221 3334444444 247889999999999999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=135.49 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=150.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~ 713 (847)
..+.|+||.|+|...+|++|+.|++++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 457899999999999999999999999999873 345556656678899999999999 88999999999999998732
Q ss_pred c-eEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 714 Y-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 714 ~-~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
. .+....++. ..+.....++++. +|+..+..|.|.+.-..+++.+..++............+...+|..+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 1 123334443 3466778899988 566888899999999999999999987766444444456688999999999999
Q ss_pred EcCCcccce-eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINAN-IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|+.....+. .+...+..++. . -|...++.+|++|+..|.|.||+.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gt---s-----~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGT---S-----LCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EecCCcceEEEEeecCcccee---e-----eeecCCCceEEeccCcceEEEecc
Confidence 997644221 11222221111 1 123346789999999999999985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=141.71 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=136.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCce--eEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~--~~~l~~h~~~I~~ 685 (847)
+..+..+.+||.... ....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+
T Consensus 180 ~~~~~~i~i~d~dg~----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~ 252 (429)
T PRK01742 180 GSQPYEVRVADYDGF----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGA 252 (429)
T ss_pred CCceEEEEEECCCCC----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCc
Confidence 344678999998654 234566788899999999999999988754 3699999987754 3333333 457
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEE
Q 003106 686 VRFSPSMPRLATSS-FDKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRV 761 (847)
Q Consensus 686 v~fsp~~~~Lasgs-~Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~ 761 (847)
++|+|||+.|+.++ .||.+.|| |+.+ ..+..+..+...+.++.|+|||+.+++++..+|.+.||++... .....
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 89999999887765 68876665 5544 3355666677788899999999988777777888999987542 22233
Q ss_pred EeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 762 FKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 762 ~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+ .+.. .+..+. +...++.... ..+.+||........... .. ......|+ + ++.+|+.++.||.++
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~-~~----~~~~~~~s----P-dG~~i~~~s~~g~~~ 396 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSS-TF----LDESPSIS----P-NGIMIIYSSTQGLGK 396 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecC-CC----CCCCceEC----C-CCCEEEEEEcCCCce
Confidence 3 2222 223333 2234444443 345567754322221111 11 11222233 4 688899998999888
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
+|.+
T Consensus 397 ~l~~ 400 (429)
T PRK01742 397 VLQL 400 (429)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=133.38 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=116.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
...|.|||+.+-+.+..+.+...+...+.++.++..+.+||.-+ ..|.|.|||+.+.+.+.++..|.+.|-||+|+++
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence 34589999987644455555556777788888888888998653 3589999999999999999999999999999999
Q ss_pred CCEEEEEeCCCc-EEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 692 MPRLATSSFDKT-VRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 692 ~~~Lasgs~Dg~-V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|.+|||+++.|+ |||+++.+ +..+..|... ...|++|+|++++. +|++.+..++|+||.++.-.
T Consensus 185 G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 999999999998 89999998 7778777543 34688999999988 55566778899999987543
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-14 Score=140.40 Aligned_cols=68 Identities=31% Similarity=0.745 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCCccCCCCCCchHHhHHHHHHHHHHhhccchh
Q 003106 4 TNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHS 72 (847)
Q Consensus 4 ~~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~~~~~~fL~eWw~~fWdif~a~~~~~~s 72 (847)
++-.|||+|..||||||++.++.++|++|+.|.++.++ +.+..+.+||.+|||||||+|+|...+++.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~ 79 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDT 79 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCc
Confidence 56679999999999999999999999999999988765 677889999999999999999987766543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-10 Score=127.15 Aligned_cols=224 Identities=11% Similarity=0.101 Sum_probs=135.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-Cc---eeEEEccCCCCeEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LK---SKTNLEEHSSLITDVR 687 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~---~~~~l~~h~~~I~~v~ 687 (847)
.++.|.+|++.....+..+.... ..+....++|+|++++|++++. ++.|.+||+++ +. .+..+. +...+.+++
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~ 132 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSAN 132 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeE
Confidence 46788899987322344444333 3345778999999999988875 88999999974 32 222232 334567889
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceE------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--Cc-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSL------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GS- 757 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~- 757 (847)
|+|++++|++++ .++.|++||+++.+... .... .......+.|+|++++++++...+++|.+||+.. ++
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 999999886555 57999999998633221 1111 2344678999999998877766789999999973 33
Q ss_pred -eEEEEeeCC------ceEEEEEecC-CCEEEEEc-CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 758 -CTRVFKVES------FCCWCVNAMN-RPCLWDKL-DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 758 -~~~~~~~~~------~~v~~~~~~~-~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
.+..+.... .....+.+.. ...++... ..+.|.+|+....... .......... ...+.+.+.+ ++.
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~---~~p~~~~~~~-dg~ 286 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTE---TQPRGFNIDH-SGK 286 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEecc---ccCCceEECC-CCC
Confidence 233332211 1122233333 34566654 4677888875322111 1111111000 1223344445 566
Q ss_pred EEEEE-eCCCeEEEEEc
Q 003106 829 CLYTG-CGDSSLSSFIA 844 (847)
Q Consensus 829 ~l~sG-s~DG~V~vW~~ 844 (847)
+|+++ ..+++|.+|++
T Consensus 287 ~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 287 YLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEEEEccCCcEEEEEE
Confidence 66655 45999999976
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=141.86 Aligned_cols=227 Identities=17% Similarity=0.211 Sum_probs=153.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC-----CCceeEEEcc---C
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEE---H 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~---h 679 (847)
++.....|++||.+.+..+.....-......|+.+.+-. |..+|++|+.||.||||+-- +.+.+..+.+ +
T Consensus 1081 ~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~ 1160 (1387)
T KOG1517|consen 1081 AADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ 1160 (1387)
T ss_pred EcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc
Confidence 344467899999998855444433334567899999876 66799999999999999743 2233333321 1
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 680 ----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 680 ----~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+.=.-++|--...+|+++++-..|||||+.. +.++. ...+....|+++.-+-.+..++++|..||.||+||.|
T Consensus 1161 ~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1161 LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred CccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecc
Confidence 11113456776666777777789999999998 44444 3355667788888776666789899999999999998
Q ss_pred CC---ceEEEEeeCCce--EEEEEec--CCCEEEEEcCCCcEEEEcCCcccce-eeeccc-c-cCCCCcccccccccccc
Q 003106 755 NG---SCTRVFKVESFC--CWCVNAM--NRPCLWDKLDAGDIQISDSLFINAN-IFCGLG-W-YGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 755 ~~---~~~~~~~~~~~~--v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~-~~~~~~-~-~~~~~~~~~~w~~~~~~ 824 (847)
.. ..+..++.|... |..+.+. +...+++++.+|.|.+||.+..... .+.... + +|+ ..+. +..|.
T Consensus 1240 ~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs-~lTa----l~VH~ 1314 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS-ALTA----LTVHE 1314 (1387)
T ss_pred cCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc-ccee----eeecc
Confidence 74 356777777766 6555543 3346999999999999997753221 111111 1 121 1222 22233
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++++|+. +.|+||++
T Consensus 1315 -hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1315 -HAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred -CCCeeeecCc-ceEEEEec
Confidence 5678999998 99999987
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-12 Score=135.55 Aligned_cols=201 Identities=15% Similarity=0.189 Sum_probs=143.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.||.+.+.+- ..+....+.+|.+.|.|-.|++||.-|+|+++||.|++|. ++|-...++......|.|++|.|+
T Consensus 82 s~DGkf~il~k----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 82 SNDGRFVILNK----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred cCCceEEEecc----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCC
Confidence 34555555443 2245566789999999999999999999999999999998 456555566667788999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.+.++.|- .+.+.|=-+.. ...+..++.|.+.|.+++|++..+ ++++|+.|-..+|||-- |..+..-..|...+++
T Consensus 157 S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 157 SNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITS 232 (737)
T ss_pred CCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhccceee
Confidence 87665544 24455555554 445667789999999999999965 78899999999999976 6667777788889999
Q ss_pred EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 772 VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
+++..+ .++...+-..+++ .......+....|+ . ++.-+++|+..|.|.+
T Consensus 233 va~npd-~~~~v~S~nt~R~--------------~~p~~GSifnlsWS----~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYNTARF--------------SSPRVGSIFNLSWS----A-DGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeeeeeee--------------cCCCccceEEEEEc----C-CCceeeccccCceEEE
Confidence 987766 4433333222221 11111222333455 3 6777888888887655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=128.19 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=143.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--eEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~~~--~~~l~~h~~~I~~v~ 687 (847)
..++.|++||+.+...++.+..+. +.+....++|+||+++|++++ .++.|.+|+++ +++. +.... .......|+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 457899999997533556666665 346677899999999987765 47899999987 3332 22222 234567899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE---
Q 003106 688 FSPSMPRLATSSF-DKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--- 760 (847)
Q Consensus 688 fsp~~~~Lasgs~-Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~--- 760 (847)
|+|++++|++++. ++.|.+||+++.+. .+..+. +...+.+++|+|+++++++++..++.|++||+++...+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999999988764 88999999975332 223332 334577899999999888888888999999998743221
Q ss_pred --EEee-CCceEEEEEec-CCCEEEEEcC-CCcEEEEcCCcccc--eeeecccccCCCCccccccc--cccccCCCcEEE
Q 003106 761 --VFKV-ESFCCWCVNAM-NRPCLWDKLD-AGDIQISDSLFINA--NIFCGLGWYGSDEIPAPSWK--VSCRSCRECCLY 831 (847)
Q Consensus 761 --~~~~-~~~~v~~~~~~-~~~~l~~~~~-~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~l~ 831 (847)
.... .......+.+. +...+|.... ++.|.+|+...... ........... ......|. +...+ ++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~p-dg~~ly 243 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA-DFSDTRWAADIHITP-DGRHLY 243 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC-cCCCCccceeEEECC-CCCEEE
Confidence 1111 11223344444 3345666655 78899998642111 11111111101 01111232 22334 677777
Q ss_pred EEe-CCCeEEEEEc
Q 003106 832 TGC-GDSSLSSFIA 844 (847)
Q Consensus 832 sGs-~DG~V~vW~~ 844 (847)
++. .+++|.+|++
T Consensus 244 v~~~~~~~I~v~~i 257 (330)
T PRK11028 244 ACDRTASLISVFSV 257 (330)
T ss_pred EecCCCCeEEEEEE
Confidence 774 5899999987
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=127.36 Aligned_cols=266 Identities=19% Similarity=0.263 Sum_probs=169.9
Q ss_pred eecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCC-CCEE
Q 003106 569 LTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRAST-SKVI 642 (847)
Q Consensus 569 ~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~ 642 (847)
+..++.+|||..++.....+.... .....++ |...+. +++.||+||+||++.. .......+..|. .+..
T Consensus 47 lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vr-f~~~ds~h~v~s~ssDG~Vr~wD~Rs~-~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 47 LSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVR-FISCDSPHGVISCSSDGTVRLWDIRSQ-AESARISWTQQSGTPFI 121 (376)
T ss_pred ecCCeEEEEeccchhhhheecCCC---CcccceE-EecCCCCCeeEEeccCCeEEEEEeecc-hhhhheeccCCCCCcce
Confidence 445667999999987766544322 2222232 333222 7899999999999976 223344455665 5677
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEECCCCce-eEEE-ccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCc-
Q 003106 643 CCHFSSDGKLLATGG----HDKKAVLWHTDTLKS-KTNL-EEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGY- 714 (847)
Q Consensus 643 ~l~fspdg~~Lasgs----~Dg~V~vwd~~~~~~-~~~l-~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~- 714 (847)
|++..-.+..|++|. .|-.|.+||++..+. ++.+ ..|.+.|++|+|+|.. +.|++||.||-|.|||++...+
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 888776778888885 366899999996654 5554 5799999999999974 5889999999999999986322
Q ss_pred -eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------------ceEEEEEecC-CCE
Q 003106 715 -SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------------FCCWCVNAMN-RPC 779 (847)
Q Consensus 715 -~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------------~~v~~~~~~~-~~~ 779 (847)
.+.....|.+.|.++.|+.++-.-+.+-+.+.+..+|+++.+.++..+.... ..|.+..... ...
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 2333335778899999998872234477788999999999988666554321 1122221111 122
Q ss_pred EEEEcCCCcEEEEcCCcc-cceee---ecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 780 LWDKLDAGDIQISDSLFI-NANIF---CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~-~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...+...+...++-.... ..... ..+...+...+....|+ ....+++||+.||.|.+|++
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~-----~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD-----VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh-----cccceeeccCCCceEEEEec
Confidence 223333444444432211 11111 11111123334444555 35788999999999999984
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.9e-13 Score=149.91 Aligned_cols=177 Identities=25% Similarity=0.335 Sum_probs=141.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..|..++||..+++ .++..++||.+.|++++.+....++++++.|..|+||.+.++.++..+.+|++.|++|+|+
T Consensus 207 tgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred ecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence 6778889999998876 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CC--------------------------------------------------------
Q 003106 690 PSMPRLATSSFDKTVRVWDAD-NP-------------------------------------------------------- 712 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~-~~-------------------------------------------------------- 712 (847)
|-- +.+.||++++||.+ ..
T Consensus 284 P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t 359 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVT 359 (1113)
T ss_pred ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEe
Confidence 954 77889999999987 10
Q ss_pred -------------------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 713 -------------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 713 -------------------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..+..+.+|...++.+.|||-..++..+++.||.+.|||+-.|..++.+.....
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 0001112367888999999999998988999999999999999988877664444
Q ss_pred eEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 768 CCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 768 ~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.+....|. ++..+....+-|.++|..
T Consensus 440 kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred eeeccccCCCCceEecCCCCCceEEec
Confidence 44333333 333444444555566654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.5e-12 Score=136.03 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=109.3
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
++..+.--.+.|...+|++||++||+.+.||.+||||.++.+++..++..-+...||+|+|||++|++|+.|.-|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 44444445668999999999999999999999999999998888887777788999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEecC-----------------------------------------------CCeEEEEE
Q 003106 710 DNPGYSLRTFMGHSASVMSLDFHPN-----------------------------------------------KDDLICSC 742 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~-----------------------------------------------g~~ll~s~ 742 (847)
.. ++.+..-.+|++.|..|+|+|- -.+-|.+.
T Consensus 362 ~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 362 EE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred cc-ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 98 7888888999999999999831 02456688
Q ss_pred eCCCcEEEEECCCCc
Q 003106 743 DGDGEIRYWSINNGS 757 (847)
Q Consensus 743 s~Dg~V~iWD~~~~~ 757 (847)
+.|..+++||+....
T Consensus 441 GqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 441 GQDTQLCLWDLTEDV 455 (636)
T ss_pred cccceEEEEecchhh
Confidence 889999999997543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=138.90 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=168.3
Q ss_pred CCCcceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccCCCCCce--EEeeecCC-----CCCCCCcEEEEe
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDGSLDDNV--ESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g~~d~~v--~~~~s~d~-----t~~~d~~v~vwd 621 (847)
...+.++.|.|....+++++.. -+||+..+........-...+.++..+ .+|..... +.+.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 3456788899877766665533 789999877632111112222333333 33422211 566799999998
Q ss_pred ccCCceeeEeEEe--e-------cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC---CC-----ceeEEEccCCCCe
Q 003106 622 VSQGFSFKEANSV--R-------ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD---TL-----KSKTNLEEHSSLI 683 (847)
Q Consensus 622 ~~~~~~~~~~~~l--~-------~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~---~~-----~~~~~l~~h~~~I 683 (847)
++.-........+ . .-...+++++|.+ +-..|+.|+++|.|..-+-. .. +....+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7753111111111 1 2234688999998 66789999999999873322 21 2233556789999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--ceEEE
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRV 761 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~--~~~~~ 761 (847)
++|.++|-+..++..+.|.+|+||.......++..+..+...|++++|+|....+|+++..||.|.|||+... ..+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 9999999887666655599999999884367788888888899999999999999999999999999999754 45555
Q ss_pred EeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCC
Q 003106 762 FKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~ 795 (847)
.+.......++.+.. ...+..|...|.+.+++..
T Consensus 482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 555555555565555 6678889999999998853
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=133.58 Aligned_cols=137 Identities=22% Similarity=0.385 Sum_probs=114.1
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 638 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 638 ~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~---------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
..+|..+.|..++. +|+||+.|..|+||-+... +.+..+..|...|++|+|+|+|+.|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999666 9999999999999987632 2234567899999999999999999999999999999
Q ss_pred ECC--------C-----C--CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 708 DAD--------N-----P--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 708 D~~--------~-----~--~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
-.. + . ....+.+.+|...|+.++|+|++. ++++++.|..+++||+..|..+..+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 0 123456678999999999999987 56699999999999999999999998888777666
Q ss_pred Eec
Q 003106 773 NAM 775 (847)
Q Consensus 773 ~~~ 775 (847)
+++
T Consensus 172 awD 174 (434)
T KOG1009|consen 172 AWD 174 (434)
T ss_pred ecc
Confidence 544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-10 Score=120.70 Aligned_cols=151 Identities=18% Similarity=0.207 Sum_probs=114.9
Q ss_pred CcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------t~~~d~~v~vwd~~~~~~ 627 (847)
.+.+|.+..+--.++-.....|+|++++++...++..-. ....++.+..... .....|.|.+||+. .
T Consensus 89 ~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~---n 162 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI---N 162 (391)
T ss_pred ceEEEEEccceEEEEEcccEEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCceEEEEEcc---c
Confidence 344555555444445566678999999988877654411 1111222222111 33447889999998 4
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEECCCCceeEEEccCC--CCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA-VLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V-~vwd~~~~~~~~~l~~h~--~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
++.+.++..|++.|-|++|++||.+|||+|+.|+| |||++.+|..+..|+... ..|.+|+|++++.+|++.+..++|
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 58889999999999999999999999999999975 999999999999997543 458999999999999999999999
Q ss_pred EEEECCC
Q 003106 705 RVWDADN 711 (847)
Q Consensus 705 ~iWD~~~ 711 (847)
+||.++.
T Consensus 243 HiFKL~~ 249 (391)
T KOG2110|consen 243 HIFKLEK 249 (391)
T ss_pred EEEEecc
Confidence 9998864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=130.85 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC----eEEeCCCCchh--hcccccc---ccCCCCCceEEeeecCC-----------
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELR--ADMDRLV---EDGSLDDNVESFLSHDD----------- 609 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~--~~~~~~~---~~g~~d~~v~~~~s~d~----------- 609 (847)
+......+.|..+|||.|+++.+.. ++||+....+. ..++.-+ ...+-|-.-.+|+-.|-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4445566789999999999998865 78998765432 1111100 00000000001111110
Q ss_pred ----------------------CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 610 ----------------------TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT 667 (847)
Q Consensus 610 ----------------------t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~ 667 (847)
.++....|.-++++.| ..+..+..-.+.|++|..++-..+|++|+.||.|-+||.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEcccc---ccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 2223334455556555 333444556689999999998889999999999999999
Q ss_pred CCCceeEEEcc------CCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCC-
Q 003106 668 DTLKSKTNLEE------HSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK- 735 (847)
Q Consensus 668 ~~~~~~~~l~~------h~~-----~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g- 735 (847)
++...+.++.. |.+ .|++|.|+.+|-.+++|..+|.|.|||+++....+..-.+..-+|..+.|.+.+
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 88776666542 333 399999999999999999999999999998544444444556688899997652
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
...|+|+. ...++|||-.+|+....+......-..+.+.+...++.+.++..+..|-
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 23454654 5789999999999888776555432233345666777777777765543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=120.24 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=149.9
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE--EeeecCC---CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~--~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
.++.+.+|+.|+..++.+..+ .|+.....+.......+.. +|..+. .|..... +++.|....+|....+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~---Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE---HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh---hCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 356788999999988876654 6777776664443333322 233332 3433322 8899999999999666
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~----~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.++++...+..++..++|+.|+|.++.||+|+.-+.|.||-.+...-- +.-+-+.+.|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 699999999999999999999999999999999999999987743221 1223567889999999999999999999
Q ss_pred CcEEEEECCC-----C------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 702 KTVRVWDADN-----P------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 702 g~V~iWD~~~-----~------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+.+|||..-- . +..+.++....+.|..+.|+|.|..| +-.+.|.+|.+-|.....
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l-awv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL-AWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe-eEecCCCceEEeecCCCc
Confidence 9999996521 0 12234444567889999999999854 577789999999987664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-12 Score=133.85 Aligned_cols=222 Identities=13% Similarity=0.131 Sum_probs=166.8
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeE
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+.++.+|++++.++.- ..+|..++.+..++.-.... .| | -+.+.. .......+.|||-.. .+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv--~D--v--~~LHneq~~AVAQK~y~yvYD~~G----tE 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETV--RD--V--TFLHNEQFFAVAQKKYVYVYDNNG----TE 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhh--hh--h--hhhcchHHHHhhhhceEEEecCCC----cE
Confidence 457889999999887755 45777777665543321100 00 0 111111 334556777888643 46
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
+.+++.| ..|..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|..+|+|.+|...
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 6677665 468899999998899999999999999999999999999888999999999999899999999999999998
Q ss_pred CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEE
Q 003106 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~ 790 (847)
. ...+..+.+|.+.|.+|+++++|. +++|.+.|..|+|||++....+.++.. ......++++....+ +.+.+..+.
T Consensus 282 s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A~~~G~~v~ 357 (545)
T KOG1272|consen 282 S-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-ALSYGDHVQ 357 (545)
T ss_pred C-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec-CCCccccccccccce-eeecCCeee
Confidence 7 677777789999999999999987 566999999999999999886666655 333444554444444 444555677
Q ss_pred EEc
Q 003106 791 ISD 793 (847)
Q Consensus 791 i~d 793 (847)
+|.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 775
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-11 Score=119.00 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=92.0
Q ss_pred CCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 003106 638 TSKVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNP 712 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasg--s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~---Dg~V~iWD~~~~ 712 (847)
.+.|.+++|+|+|+.||+. ..++.|.|||++ ++.+..+. ...+..|.|+|+|++|++++. .|.|.+||+++
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~- 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK- 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 4569999999999987655 356799999997 66666663 567889999999999999875 46799999997
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCceEEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~V~iWD~~~~~~~~~~ 762 (847)
...+.++. | ..++.++|+|+|++++.+.+. |+.++||++. |+.+...
T Consensus 135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 66666654 4 347899999999977755543 7889999985 6555444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-12 Score=126.16 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=115.9
Q ss_pred CCCCCcEEEEeccCCc-------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce--eEEEccC
Q 003106 611 DPRDAGGRGMDVSQGF-------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKS--KTNLEEH 679 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~--~~~l~~h 679 (847)
+-.+|.+.+||+.++. .++.+..+..|..+|.++.|.+.-..=++|+.+..+..|.+.. +.+ -.+++-.
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 4567788888888751 2345556678999999999998777778888888999998862 222 2223333
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
.-.|..+.+.||++.|||+++|+.||||..++ ...+..++-|.+.|++|+|+|+.+ ++++++.|+.|.+|++
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 45689999999999999999999999999999 788999999999999999999954 8889999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=125.83 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=122.7
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.+.+.+|.+.|++|.|+.++++|++|++|..++||+++. .+++..... |...|.|++|.-..+.|++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345678999999999999999999999999999999863 355554443 5588999999999999999999999
Q ss_pred EEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEe-e-CCceEEEEEec--C
Q 003106 704 VRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK-V-ESFCCWCVNAM--N 776 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~-~-~~~~v~~~~~~--~ 776 (847)
|.+.|+++ ...+..+.. ..+.|+.+..+|. .++|++.+.++.|.|||.+... .+..+- . .......+.|. .
T Consensus 129 VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIET-KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeeccc-ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999998 666666642 2358999999999 4577799999999999998754 222111 1 11222223222 2
Q ss_pred CCEEEEEcCCCcEEEEcCCcc
Q 003106 777 RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~ 797 (847)
...+.+..+.+-+-+||.+..
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ceeEEeccccCCCCceeeccc
Confidence 234556667777888885543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=133.50 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=143.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|.+++|-|||..|+.+.. ..+.|||...|..+.++++|.+.|+||+|+.||+++++|+.|+.|.||.-.-.+ +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 7999999999999888764 579999999999999999999999999999999999999999999999876522 2223
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
.|.+.|.|+.|+|-.. .+++|+.. ..-+|...... +...+.....+.|....++..+..+..+|+|.+-+......
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 5999999999999965 56688854 67899876543 33333333444444445566777888999999886544333
Q ss_pred eeeecccccCCCCccccccccccccC----CCcEEEEEeCCCeEEEEEc
Q 003106 800 NIFCGLGWYGSDEIPAPSWKVSCRSC----RECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+-+ .....+|++.|.+. ....+++.....++.+|.+
T Consensus 167 ~~I~Rpg-----g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 167 VKIERPG-----GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred eEEeCCC-----CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 3333322 22344666665443 3467888888888888865
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=115.11 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=105.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
...++.|++.+..++++..+|.+.+-+...... +.+++.|.-.++-..|+.. .+.+++|++|+.+..||+|.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 355888999999999999999998666554433 4478899999999999865 4578999999999999999655554
Q ss_pred EE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEEEeeCCceEEEEEe
Q 003106 717 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 717 ~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~~~~~v~~~~~ 774 (847)
.. .+.|...|.+|.-+|-.+.++++|+.|..|++||.|+ ++++..-... +.||.+..
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~ 261 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKH 261 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceEEEEe
Confidence 44 5679999999999998888999999999999999995 5555443322 44555543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=116.35 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=123.5
Q ss_pred CCCEEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 638 TSKVICCHFSS-DGK--LLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~--~Lasgs~Dg~V~vwd~~~~----------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.+.|.|..+.. +++ +|+.|-++|.|.+||+.++ +.+..+..|..+|++|.|.+....=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 35677777544 333 4667778999999999987 4444556799999999999877777888989999
Q ss_pred EEEECCCCCce--E-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEE
Q 003106 705 RVWDADNPGYS--L-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCL 780 (847)
Q Consensus 705 ~iWD~~~~~~~--~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 780 (847)
..|.+...... + .+.+--.-.|..+...||++ +++|++.|+.||||..++...+.+++.|...|.+++|..+ ..+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 99998753111 1 11222234588899999987 8899999999999999999999999999999999999877 667
Q ss_pred EEEcCCCcEEEEcC
Q 003106 781 WDKLDAGDIQISDS 794 (847)
Q Consensus 781 ~~~~~~g~i~i~d~ 794 (847)
..++.|+.|.+|+.
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 78889999999973
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-11 Score=127.49 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=136.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-
Q 003106 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~- 720 (847)
.+++|+.||..|++|+.||++|||+..+...+.....|...|.+++|+|||+.|++.+.| ..+|||+++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999998888888888999999999999999999999999 999999998 54444433
Q ss_pred -cCCCCeEEEEEecCC--CeEE--EEEeCCCcEEEEECCCCceE-----EEEeeCCceEEEEEecC-CCEEEEEcCCCcE
Q 003106 721 -GHSASVMSLDFHPNK--DDLI--CSCDGDGEIRYWSINNGSCT-----RVFKVESFCCWCVNAMN-RPCLWDKLDAGDI 789 (847)
Q Consensus 721 -~h~~~V~sl~fsp~g--~~ll--~s~s~Dg~V~iWD~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i 789 (847)
.-......+.|..++ +.++ +.-..-+.|+.||+...+.- +........+.+++... ...+..++.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345667787765 2232 23334467888877653321 11112234577777654 4556678889999
Q ss_pred EEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 790 QISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 790 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.+++........+.... |...++...+. | +.+++++-+.|..+.|.++
T Consensus 306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~----P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFS----P-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEEEeceeeeeEeehhh--heeeeeeEEEc----C-CcCcccccccCCceeEEEE
Confidence 99997655444444433 34455554444 3 5666777777777776654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=118.53 Aligned_cols=185 Identities=19% Similarity=0.181 Sum_probs=140.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-C--CCceeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-D--TLKSKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~--~~~~~~~l~~h~~~I~~v 686 (847)
.+.....+.||.......++...++..|...|++|+|+|..+.|++|+.|...+||.. + +.++...+..+...++||
T Consensus 27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV 106 (361)
T ss_pred eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE
Confidence 3455668889998888569999999999999999999999999999999999999998 3 335556677899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-----C---
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-----N--- 755 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-----~--- 755 (847)
.|+|.++.||+|+.-..|.||-++.... ....-+.+.+.|++++|+|++- ++++|+.|+..|||..- +
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCC
Confidence 9999999999999999999998875211 1122345788899999999964 78899999999999641 1
Q ss_pred ----------CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCC
Q 003106 756 ----------GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ----------~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~ 795 (847)
|..+..+....+.+..+.+.. ...+.-...+..+.+.|..
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 223334444456666666652 3344444455666666533
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-11 Score=134.99 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=124.7
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecC-CCeEEEEEeCCCcEEE
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRY 750 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~i 750 (847)
..++.+|.+.|+|++|+.+|.+|++|++|-.|.|||.-. .+.+. .-.||...|.++.|-|. +.+++++|..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 356889999999999999999999999999999999986 44444 44799999999999985 5668889999999999
Q ss_pred EECCC----------CceEEEEeeCCceEEEEEe--cCCCEEEEEcCCCcEEEEcCCcccceee---ecccccCCCCccc
Q 003106 751 WSINN----------GSCTRVFKVESFCCWCVNA--MNRPCLWDKLDAGDIQISDSLFINANIF---CGLGWYGSDEIPA 815 (847)
Q Consensus 751 WD~~~----------~~~~~~~~~~~~~v~~~~~--~~~~~l~~~~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~ 815 (847)
||+.. .+.++.+.+|...|..++. .....+|+.+++|.|+-+|.+..+.... +............
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99984 2334445566665555543 3447899999999999999654221111 0000000011112
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....+...+.+..+|++|+.|-.+++||.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 23334456667899999999999999983
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=124.30 Aligned_cols=196 Identities=16% Similarity=0.126 Sum_probs=130.6
Q ss_pred ceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccC-Ccee
Q 003106 557 PLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQ-GFSF 628 (847)
Q Consensus 557 ~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~-~~~~ 628 (847)
..+.+++.|.+.+. .-.+.+|++.... ...........+..++.++ +++.+ ++..||.|.+|.-.. ...-
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 35566666665444 3444678877644 1111111111122222222 22222 566778899998554 2233
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.....++-|.+.|++++|++||.+|++||..|.+.+|.+++++ ..-+..-.+.|..+.++||+++.+....|+.|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 4556788899999999999999999999999999999999888 455666778999999999999999999999999987
Q ss_pred CCCCCceEEEec-----------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 709 ADNPGYSLRTFM-----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 709 ~~~~~~~~~~~~-----------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..+. ....++. .-.+-.+.++++|.-+ .++-++..|.|.+||+-+.+
T Consensus 321 ~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 321 ASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ccch-hhhhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccc
Confidence 7542 1111111 1244567788888433 44567777888888875543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-11 Score=125.31 Aligned_cols=177 Identities=19% Similarity=0.126 Sum_probs=129.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~ 687 (847)
+++.||++|+|++... ..+..+..|...|.+++|+|||++|++-+.| ..+||+++++..+.... .....+..++
T Consensus 161 tgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred eccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 8899999999997643 4566677899999999999999999999999 99999999997766554 2334467889
Q ss_pred EcCCC---CEE--EEEeCCCcEEEEECCCCCc----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSM---PRL--ATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~---~~L--asgs~Dg~V~iWD~~~~~~----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+.++ .++ +.-..-+.|+.||+..... ..+........|.+++.+.+|+ +++.|+.||.|-|++..+.++
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeee
Confidence 98877 332 3334456688877754222 1222222334699999999988 677999999999999999888
Q ss_pred EEEEe-eCCceEEEEEecCCCE-EEEEcCCCcEEE
Q 003106 759 TRVFK-VESFCCWCVNAMNRPC-LWDKLDAGDIQI 791 (847)
Q Consensus 759 ~~~~~-~~~~~v~~~~~~~~~~-l~~~~~~g~i~i 791 (847)
+..++ .|...|+.+.|.++.. +...+.+..+.+
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 77665 6777889888876543 333444444433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=128.35 Aligned_cols=245 Identities=13% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCCCCCcceEEEecC-CCeEeecCCC---eEEeCCCCchhh-cccc---ccccCCCCCceEEeeecCC--CCCCCCcEEE
Q 003106 550 HSGTTSKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRA-DMDR---LVEDGSLDDNVESFLSHDD--TDPRDAGGRG 619 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~-~~~~---~~~~g~~d~~v~~~~s~d~--t~~~d~~v~v 619 (847)
+.|...+..++.+++ +.++++++++ ++||........ .+.. +...+.....+......+. .++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 344444445555554 4777776655 999998755431 1111 1111111111221111111 4688999999
Q ss_pred EeccCCc----eeeEeEEeecC--CCCEEEEEEcC-CCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEc
Q 003106 620 MDVSQGF----SFKEANSVRAS--TSKVICCHFSS-DGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFS 689 (847)
Q Consensus 620 wd~~~~~----~~~~~~~l~~h--~~~V~~l~fsp-dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fs 689 (847)
.++.-.. ..........+ ...|.+-+|.. +.. .|+.+..-+.|..||+.......+++ ...+.|++++.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence 8887521 11122222222 23344555554 344 78888888999999998766555443 345789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCC--e-EEEEEe-CCCcEEEEECCCCceEEEEee
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKD--D-LICSCD-GDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~--~-ll~s~s-~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|.+.++++|...|.+.+||+|- +..+..+ ..+...++.|..+|..+ . .+.+++ ..+.|.+|++.+|.+..++..
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred CCceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 9999999999999999999997 4545444 45667888888887644 3 443444 578999999999988777754
Q ss_pred C-C-------------------ceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 765 E-S-------------------FCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 765 ~-~-------------------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
. . ..+.|........+.++..+..|+.||..
T Consensus 1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 3 1 11233334456778899999999999943
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-10 Score=131.62 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=142.5
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 628 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
...+..+..|...|..++.+++. .+|+|||.||+|+|||.... +...++.-....+.++.+.+.++.+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 35788889999999999998855 99999999999999998631 23334444567899999999999999999
Q ss_pred CCCcEEEEECCCC------------------CceE-------------EE-----------------------eccCCCC
Q 003106 700 FDKTVRVWDADNP------------------GYSL-------------RT-----------------------FMGHSAS 725 (847)
Q Consensus 700 ~Dg~V~iWD~~~~------------------~~~~-------------~~-----------------------~~~h~~~ 725 (847)
.||.|++.+++.. +..+ .. .....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999988651 0000 00 0012467
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-eE---EEEEecC--CCEEEEEc-CCCcEEEEcCCccc
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-CC---WCVNAMN--RPCLWDKL-DAGDIQISDSLFIN 798 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-~v---~~~~~~~--~~~l~~~~-~~g~i~i~d~~~~~ 798 (847)
|++++.+|.+. +++.|+..|.+.+||+|=+..+..+..... .+ ++..... ...+.++. ..+.+.+|+.....
T Consensus 1198 vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99999999987 566999999999999998888877764322 22 2222222 33444454 56678888744322
Q ss_pred ce--eeecccc-----c-CCC--Ccccccccccc-ccCCCcEEEEEeCCCeEEEEEccC
Q 003106 799 AN--IFCGLGW-----Y-GSD--EIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 799 ~~--~~~~~~~-----~-~~~--~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. +....+. . ... ......-...| ......++++|+.|+.||.||..+
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 21 1111010 0 000 00000001111 222457899999999999999753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=110.61 Aligned_cols=135 Identities=18% Similarity=0.262 Sum_probs=101.4
Q ss_pred CCCcEEEEeccCCceeeE-----------eEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCC
Q 003106 613 RDAGGRGMDVSQGFSFKE-----------ANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~-----------~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
-.+.|.+|.......... +....+| ..|+++.|.+||..|++++. |..|+|||++++..+......-
T Consensus 160 Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 160 CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 346678888665321111 2223345 68999999999999999986 5789999999988776664556
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
+.++-+.|+||+.+|+++.-|+..++|.......+.+-.. ..+.|..-+|+|+|..+|++++..-.|+
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 7789999999999999999999999996655233333333 3458999999999999998887554443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=120.49 Aligned_cols=141 Identities=19% Similarity=0.204 Sum_probs=123.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+...|.|-+|++..+ .++....-..|-+.|.++-++.+-..|.+++.|+.|.+|+...+..++.+.+....+.+++++|
T Consensus 76 gt~~g~v~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred ecCCccEEEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence 445677888888877 4444444568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecC-----CCeEEEEEeCCCcEEEEECCC
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-----KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~-----g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|+..|++++ +.|++||+++ ++.+.+|.||.+.|.++.|--+ |.++|.+...+..|.+|-++.
T Consensus 155 D~~~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999987 7899999999 8999999999999999999877 788887777778888997764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-09 Score=119.30 Aligned_cols=161 Identities=12% Similarity=0.130 Sum_probs=132.2
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc--------------------CCCCEEEEEeCCCcEEEEECCCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS--------------------SDGKLLATGGHDKKAVLWHTDTL 670 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs--------------------pdg~~Lasgs~Dg~V~vwd~~~~ 670 (847)
...||.+|+||+.++..-.++.-...-++..++..|. .|-..|+-|...|.|.+|++..+
T Consensus 11 ~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g 90 (541)
T KOG4547|consen 11 STGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGG 90 (541)
T ss_pred cCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCC
Confidence 4578999999999873322222222234455555552 24457888888999999999999
Q ss_pred ceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 671 KSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 671 ~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
+...++. .|.+.|.++-++.+-..|.+++.|+.|.+|+... +..++.+.+....+.+++.+||+. ++++++ +.|
T Consensus 91 ~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~i 166 (541)
T KOG4547|consen 91 EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQI 166 (541)
T ss_pred eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCC-EEEecc--ceE
Confidence 9988886 6889999999999988999999999999999998 788899999999999999999987 555765 789
Q ss_pred EEEECCCCceEEEEeeCCceEEEEEec
Q 003106 749 RYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 749 ~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
++||+++++.+..|.+|...|.++.|.
T Consensus 167 k~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 167 KVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEEEccCceEEEEecCCCcceEEEEEE
Confidence 999999999999999999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.6e-10 Score=126.06 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=107.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vw--d~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..+.+||+.++ ..+.+..+.+| ..+++|+|||++|++++ .||.+.|| |++++. +..+..+...+.++.|+|
T Consensus 227 ~~~i~i~dl~tg-~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 227 KSQLVVHDLRSG-ARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred CcEEEEEeCCCC-ceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC
Confidence 346788888776 33344444444 34689999999888765 68876655 665555 455666777789999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 691 SMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 691 ~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
||+.|+.++ .++.+.||+++..+.....+ .+.. .++.|+|+|+.++++ +.+ .|.+||+.+++..........
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~-~~~-~i~~~Dl~~g~~~~lt~~~~~-- 374 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI-NGD-NVVKQDLTSGSTEVLSSTFLD-- 374 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE-cCC-CEEEEECCCCCeEEecCCCCC--
Confidence 999876655 57888999876533333333 3443 467899999976544 445 466699998876543322211
Q ss_pred EEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 770 WCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 770 ~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
....+. +...++....++.+.+|+.
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEE
Confidence 222222 3334555555666665553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-10 Score=117.35 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=120.4
Q ss_pred CCCCC--CcEEEEeccCCceeeEeEEeecC---------CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCC-CceeEE
Q 003106 610 TDPRD--AGGRGMDVSQGFSFKEANSVRAS---------TSKVICCHFSSD--GKLLATGGHDKKAVLWHTDT-LKSKTN 675 (847)
Q Consensus 610 t~~~d--~~v~vwd~~~~~~~~~~~~l~~h---------~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~-~~~~~~ 675 (847)
+++.. ..+++||++.. +.+..-+.- .-.++++.|-+. ...||+++.-+.||+||... .+++..
T Consensus 166 ~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 166 TGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred cCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 45555 67889999875 333332211 124678899986 78999999999999999985 567888
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|.-...+|+++...|+++.|++|..-|.+..||++........+.+..+.|++|..+|.+. ++++|+.|..|||+|+.+
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 8888889999999999999999999999999999984333445889999999999999977 778999999999999999
Q ss_pred CceEEE
Q 003106 756 GSCTRV 761 (847)
Q Consensus 756 ~~~~~~ 761 (847)
.+.++.
T Consensus 322 rkll~k 327 (412)
T KOG3881|consen 322 RKLLHK 327 (412)
T ss_pred chhhhh
Confidence 665543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-09 Score=119.64 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=115.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
....+.+||.... ....+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+
T Consensus 182 ~~~~l~i~D~~g~----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~S 256 (433)
T PRK04922 182 MRYALQVADSDGY----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFS 256 (433)
T ss_pred ceEEEEEECCCCC----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceEC
Confidence 3456888888543 334456678889999999999999988743 46999999877653 333444556689999
Q ss_pred CCCCEEE-EEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEEee
Q 003106 690 PSMPRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~La-sgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~~~ 764 (847)
|||+.|+ +.+.+| .|++||+.+ +. +..+..+......++|+|+|+.++++...+|. |.++|+.+++..... .
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~ 333 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F 333 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c
Confidence 9999775 455555 599999987 44 44555566666789999999987766655665 666677776644332 2
Q ss_pred CCceEEEEEe--cCCCEEEEEcCCC--cEEEEcCC
Q 003106 765 ESFCCWCVNA--MNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 765 ~~~~v~~~~~--~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.........+ ++...++....++ .|.+|+..
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 2222222233 3333333333333 47778754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=122.67 Aligned_cols=129 Identities=24% Similarity=0.366 Sum_probs=110.3
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTVR 705 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~ 705 (847)
.....+..|.+.|..|.|...|..|++|++|..|.+||..+++.+..|. +|...|.--.|-|. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4456678999999999999999999999999999999999888877765 89999998889885 34789999999999
Q ss_pred EEECCCCCceE--EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 706 VWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 706 iWD~~~~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+=.+...+.+. ..+..|.+.|..++..|+..+-|.+|+.|+.|.-+|++.+.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC
Confidence 98887645443 34556999999999999998888999999999999998653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=132.49 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=118.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRF 688 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~f 688 (847)
++..-+.+.+|+.... -+.. .+.+|.+.|.++.|+.||++++++|+|.+||+|++++.+... +.-+|+..|+.++|
T Consensus 150 ~gsv~~~iivW~~~~d--n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHED--NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred eccccccEEEEecccc--CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 5677788899998732 2222 688999999999999999999999999999999999988776 66799999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+|+ +|+|++.|.++++|+.+ +..+.++++|. ..++.++.+++.. +++|++.|+.|++||+..
T Consensus 227 ~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc--eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 998 89999999999999776 45677888886 4688999887754 777999999999999864
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-08 Score=102.90 Aligned_cols=229 Identities=13% Similarity=0.131 Sum_probs=148.9
Q ss_pred eEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCC-------CCCceEEeeecCC-CCCCCCcEEEEeccCCce
Q 003106 558 LMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGS-------LDDNVESFLSHDD-TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~-------~d~~v~~~~s~d~-t~~~d~~v~vwd~~~~~~ 627 (847)
+++|.-|-.-.+.+... +||+++-.+.... +-...++ +..++..+..... .--...++-|||-...
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~--r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~-- 85 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESAS--RQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE-- 85 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhh--hccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC--
Confidence 36777776655444333 8888765332221 1111111 1223333322111 1123467889995544
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCC--CCeEEEEEcCCCCEEEEEe-CCCc
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHS--SLITDVRFSPSMPRLATSS-FDKT 703 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~--~~I~~v~fsp~~~~Lasgs-~Dg~ 703 (847)
+++.++. -..+|.+|++.+| +|++.- +++|+||... +.+.++.+.... ..+.+++-.-+..+||.-+ .-|.
T Consensus 86 -~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 -RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred -cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 4444443 5678999999865 566654 6789999987 566666665332 2344444333444555544 5789
Q ss_pred EEEEECCCCCc-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEEeeC--CceEEEEEecCC-C
Q 003106 704 VRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKVE--SFCCWCVNAMNR-P 778 (847)
Q Consensus 704 V~iWD~~~~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~~~~--~~~v~~~~~~~~-~ 778 (847)
|.|-|+..... ....+..|.+.|.||+.+-+|. ++||+|..|+ |||||..+|+.+..++.. ...++|+++... .
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 99999986322 2467789999999999999987 7789998886 799999999999999855 456899998755 4
Q ss_pred EEEEEcCCCcEEEEcCCc
Q 003106 779 CLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~ 796 (847)
.+...++.|++.||....
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 566777888999987543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=117.04 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||.... ....+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|
T Consensus 181 ~~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC
Confidence 457778887543 34456678889999999999999988764 468999999887663 4555667788999999
Q ss_pred CCCEEE-EEeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 691 SMPRLA-TSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 691 ~~~~La-sgs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
||+.|+ +.+.++. |++||+.+ +. +..+..+.....+..|+|||+.++++...+| .|.+||+.+++....
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~-~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRS-GT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCC-Cc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 999875 5555655 77778876 33 4556666667788999999998776654444 588889877654443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=119.69 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=187.9
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE--EeeecCC-----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDD-----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~--~~~s~d~-----t~~~d~~v~vw 620 (847)
.|...+..+.|...|..+++++++ -+||...+...-.+.. ++..+|- .|+...+ ++++||-+++-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-----GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-----GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-----ccccchhhhhccCCCCCcCceeccccCceeee
Confidence 444566789999999999998888 4699877765443221 1222221 1322222 78889999987
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE---ccCCC---CeEEEEEcCCCC
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNL---EEHSS---LITDVRFSPSMP 693 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~---~I~~v~fsp~~~ 693 (847)
.+......+....+..|.+.|.-++.-|+. +.|.+++.|+.|.-+|+........+ +.+.. ...+|+.+|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 766553555567778899999999999954 57999999999999999865443332 23333 467899999766
Q ss_pred -EEEEEeCCCcEEEEECCCCCce-----EEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--C---
Q 003106 694 -RLATSSFDKTVRVWDADNPGYS-----LRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G--- 756 (847)
Q Consensus 694 -~Lasgs~Dg~V~iWD~~~~~~~-----~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~--- 756 (847)
.|++++.|-.+||||.+.-.+. +..|.. ....|++++|+.++..+|++-. |-.|+++.-.- |
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEP 373 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEeccccccCCCC
Confidence 7899999999999999852211 222222 2346999999988888885554 66788884332 2
Q ss_pred -------ceE-EEEeeCCc--eEEEEEecC--CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 757 -------SCT-RVFKVESF--CCWCVNAMN--RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 757 -------~~~-~~~~~~~~--~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
..+ .++++|.. .|.++.|.+ ..+|.+|++.|.|.+|+........+.. +... ++-.+.-++
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me----gDr~---VVNCLEpHP 446 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME----GDRH---VVNCLEPHP 446 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----cccc---eEeccCCCC
Confidence 122 23777754 467777776 6789999999999999965332211111 1111 111222233
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
.-.+|++.+-|.-|+||.-
T Consensus 447 -~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 447 -HLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -CCchhhccCCccceeeecC
Confidence 3467999999999999975
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=122.10 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=132.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEc-------------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSKTNLE------------- 677 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~vwd~~~~~~~~~l~------------- 677 (847)
+..|.||.+.++ .++..+.+|...++.+.+.+.. .++++++.||+|++||...+..++++.
T Consensus 36 ~~~V~VyS~~Tg---~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~ 112 (792)
T KOG1963|consen 36 GNFVKVYSTATG---ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPA 112 (792)
T ss_pred CCEEEEEecchH---hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechh
Confidence 457888888877 5666899999999999999844 478899999999999976554433310
Q ss_pred --------------------------------------------------------------------------------
Q 003106 678 -------------------------------------------------------------------------------- 677 (847)
Q Consensus 678 -------------------------------------------------------------------------------- 677 (847)
T Consensus 113 ~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~ 192 (792)
T KOG1963|consen 113 QADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT 192 (792)
T ss_pred HhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc
Confidence
Q ss_pred ----------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CCceEEEeccCCCCeEEEEEecCCCeEEEEEeC
Q 003106 678 ----------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 678 ----------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~---~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~ 744 (847)
.|.-.++|+++||+++++|+|..||.|.+|.--. .......+.-|.+.|++++|+++|.+++ +|+.
T Consensus 193 ~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~ 271 (792)
T KOG1963|consen 193 KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGR 271 (792)
T ss_pred eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe-eccc
Confidence 1444678999999999999999999999995432 2344567778999999999999999665 9999
Q ss_pred CCcEEEEECCCCceEEEEeeCCceEEEEE-ecCCCEEEEEcCCCcEEEEcC
Q 003106 745 DGEIRYWSINNGSCTRVFKVESFCCWCVN-AMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 745 Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~~~~g~i~i~d~ 794 (847)
+|.+.+|.+.+++ ...+..-...+..+. ..+...+....+|..|.+...
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 9999999999998 333443344444433 334444455666777776653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=125.79 Aligned_cols=200 Identities=17% Similarity=0.223 Sum_probs=138.4
Q ss_pred CcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~ 627 (847)
....+.++|.|+.++.++.. .+.|+++.-....+-+.+. .....-.-|..+.. .........+|++.....
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45567888888877666554 4456555433222211110 00000111211111 122233445788776644
Q ss_pred eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 628 FKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
-.....+.+|...|+++.|++ ....|++++.|..|..||+++ ...+..+..-...-..|+|+-....+.+.+..+.|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 455566789999999999999 456899999999999999985 345555555455668899998766666677778899
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|||.+.+...+..+++|...|++++|.......+.+++.||+|++||....
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999888999999999999999998765556669999999999998754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=105.24 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=109.4
Q ss_pred CCcceEEEecCCCeEeecCCCeEEeCC-CCchhhccccccccCCCCCceEEeeecCC------CCCCCCcEEEEeccCCc
Q 003106 554 TSKPLMMFGTDGAGTLTSPSNQLWDDK-DLELRADMDRLVEDGSLDDNVESFLSHDD------TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~~iWD~~-~~~~~~~~~~~~~~g~~d~~v~~~~s~d~------t~~~d~~v~vwd~~~~~ 626 (847)
..+..+++.+|--.++..+...+|... +.+....++... -.+.+++...... -+..-|.|.|.|+...
T Consensus 95 ~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~----NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~- 169 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRS----NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST- 169 (346)
T ss_pred cceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeeccc----CCCceEeecCCCCceEEEcCCCccceEEEEEhhhc-
Confidence 345667777665555556666777765 333333222221 0111222211111 2344588999998765
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-AVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.......+.+|...|.|++++-+|.+|||+|..|+ |||||..+++.+.+++.. ...|.||+|+|+..+||++|+.||
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 22234678999999999999999999999999998 599999999999998743 356999999999999999999999
Q ss_pred EEEEECCC
Q 003106 704 VRVWDADN 711 (847)
Q Consensus 704 V~iWD~~~ 711 (847)
|+||.++.
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99999976
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-08 Score=113.24 Aligned_cols=214 Identities=16% Similarity=0.099 Sum_probs=127.8
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
....+.+||.... ....+..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +......+.+++|+
T Consensus 177 ~~~~l~~~d~dg~----~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~S 251 (429)
T PRK03629 177 FPYELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFS 251 (429)
T ss_pred cceeEEEEcCCCC----CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEEC
Confidence 3556788887654 22334456778999999999999987653 4579999998876433 22333445678999
Q ss_pred CCCCEEEEE-eCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCceEEEEee
Q 003106 690 PSMPRLATS-SFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Lasg-s~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~~~~ 764 (847)
|||+.|+.. +.+| .|++||+++ +.. ..+..+...+....|+|+|+.++++...++...|| |+.+++.. .+..
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~t-g~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~ 328 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW 328 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec
Confidence 999988765 4455 589999987 443 34444555678899999999877666555555555 67666543 3332
Q ss_pred CCceEEEEEe--cCCCEEEEEcCCC--cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe--
Q 003106 765 ESFCCWCVNA--MNRPCLWDKLDAG--DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS-- 838 (847)
Q Consensus 765 ~~~~v~~~~~--~~~~~l~~~~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~-- 838 (847)
......+..+ ++...++....++ .|.+|+........+.. . .......|+ + ++.+|+.++.|+.
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~----~~~~~p~~S----p-DG~~i~~~s~~~~~~ 398 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-T----FLDETPSIA----P-NGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-C----CCCCCceEC----C-CCCEEEEEEcCCCce
Confidence 2222222332 3333334444333 36666644322221111 1 111122333 3 6777777777764
Q ss_pred -EEEEEc
Q 003106 839 -LSSFIA 844 (847)
Q Consensus 839 -V~vW~~ 844 (847)
+.+|++
T Consensus 399 ~l~~~~~ 405 (429)
T PRK03629 399 VLNLVST 405 (429)
T ss_pred EEEEEEC
Confidence 455554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=137.29 Aligned_cols=181 Identities=23% Similarity=0.331 Sum_probs=141.9
Q ss_pred ceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 003106 600 NVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 674 (847)
Q Consensus 600 ~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~ 674 (847)
+|+.+.++.. +++.||.|++|....+...-+.++. + ..+|+.+.|+..|+.+..+..||.+.+|.+. .++..
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 4444444433 8999999999999877433333332 2 3899999999999999999999999999987 66777
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
..+.|.....+++|-. ..+++++ +++.|.+||..-+......-++|.+.++++++.|... +|++|+.+|.|++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCcEEEe
Confidence 7889999999999985 5677764 5788999998754433333378999999999999976 66799999999999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
|++..+.++.|.. .+....+..+...|.++||+..
T Consensus 2364 D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcc
Confidence 9998888777765 2245566778888888888854
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=117.22 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=112.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||.... ....+..+...|.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+.+++|+|
T Consensus 175 ~~~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP 249 (427)
T ss_pred ccEEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence 345666666432 333455678889999999999999887753 359999999887643 333445677899999
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCceEEEE-eeCC
Q 003106 691 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KVES 766 (847)
Q Consensus 691 ~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~--~~~~~~~~~-~~~~ 766 (847)
||+.|+ +.+.+|...||.++..+..+..+..+...+.+..|+|||+.+++++..+|...||.+ .+++..... .+..
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 999886 567788877776543233455666666667788999999988766655677777755 444433222 2211
Q ss_pred ceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.....+..++...++....++ .|.+|+..
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 111223333333344443433 47777754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-09 Score=119.34 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=91.1
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++. ... +....+.+.+.+|+|||+.|+ +.+.|+...||.+ .++. ...+..+...+.+..|+|||
T Consensus 221 ~I~~~dl~~g~-~~~---l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 221 VVYVHDLATGR-RRV---VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEEECCCCC-EEE---eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCC
Confidence 46778887662 222 223345567899999999886 5677887666654 4443 45565666667788999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 693 PRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 693 ~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
+.|+..+. +|...||.++..+.....+..+.......+|+|+|+.+++++..++ .|.+||+.+++....
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 98876654 5666777654222222222222334456899999997765544333 699999998875443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=114.16 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+..+.+ .+.+++|+|||+.|+.. +.+| .|++||+++++... +..+...+....|+|||
T Consensus 224 ~i~i~dl~~G-~~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG 298 (429)
T PRK03629 224 ALVIQTLANG-AVRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS 298 (429)
T ss_pred EEEEEECCCC-CeEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC
Confidence 4566777665 2333333333 34568999999988865 4455 58899998877654 44445567899999999
Q ss_pred CEEEEEeC-CCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceE
Q 003106 693 PRLATSSF-DKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCT 759 (847)
Q Consensus 693 ~~Lasgs~-Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~ 759 (847)
+.|+.++. ++...|| |+.+ +. ...+..+...+.+++|+|+|+.+++++..+ ..|.+||+.+++..
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 98877765 4454555 6654 32 334444444567799999999877665544 35888999888644
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=103.41 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=89.2
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECC-CCceeEEEcc-CCCCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 003106 642 ICCHFSSDGKLLATGGH---D-------KKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSMPRLATS--SFDKTVRVW 707 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~---D-------g~V~vwd~~-~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasg--s~Dg~V~iW 707 (847)
..+.|+++|++|+.-.. | +...||.++ ....+..+.- ..+.|.+++|+|+++.||++ ..++.|.||
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 1 335556553 2333444432 34569999999999987654 357899999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
|++ ...+..+. ...+..|.|+|+|+.++++|. ..|.|.+||+++.+++..+.... +..+.++++.
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--ATDVEWSPDG 155 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--EEEEEEcCCC
Confidence 997 45556653 467889999999997665442 24779999999888887776443 3445544433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9e-09 Score=120.59 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=145.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~ 713 (847)
.+.|....+.-+.+.++.++.+..|.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 445555666678889999999999999999877776665432221 1123346666689999999999999997533
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE-EEeeCCceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKVESFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
... .+.||.+.|.++.|+-+|. +++++|.|.++|+|++.+.+... +.-+|...++.+.+.+. .+.+..++...++|
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW 243 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVW 243 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEE
Confidence 333 6789999999999999987 56699999999999999988666 66678888887777666 88999999999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+... ..+..... .....+|.+.... +...++|++.||.+++|+.
T Consensus 244 ~~~~---~~l~~y~~----h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 244 GVNG---TQLEVYDE----HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred eccc---ceehhhhh----hhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence 5332 11221111 1122356655444 5778999999999999986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-09 Score=112.54 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=125.8
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEEeccCC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
.++.....+..+.||++.+.+...++- ..++. +.+.+ +.-+.+|+ +.+.||.|++|.-..-
T Consensus 71 ~g~~~d~~~i~s~DGkf~il~k~~rVE--------~sv~A------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 71 GGKGSDTLLICSNDGRFVILNKSARVE--------RSISA------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred CCCCcceEEEEcCCceEEEecccchhh--------hhhhh------hhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 334444566667888877665554441 11110 11111 11233444 7889999999985432
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
...++......|+|++|.|+.+.++.|-. +.+.|=-+.....+-..+.|.+-|.|++|++..+.|++|+.|...+
T Consensus 137 ----LRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK 211 (737)
T KOG1524|consen 137 ----LRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK 211 (737)
T ss_pred ----HHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence 22334456778999999998776666543 4566666665556667889999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|||.. +..+.+-..|.-+|++|+|.|+ + +++.++. +++|+=..+.|.
T Consensus 212 vWD~~--G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~GS 258 (737)
T KOG1524|consen 212 IWDAQ--GANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVGS 258 (737)
T ss_pred eeccc--CcccccCChhccceeeeeeccc-c-ceeeeee-eeeeecCCCccc
Confidence 99987 5667777789999999999999 3 4546664 467755555444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-08 Score=107.78 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=130.8
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 649 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd 649 (847)
..+.|..+.+....+....+ ......+++|+ ..++|+.+.++|+.+. +.+.+++.. ....++++++|
T Consensus 18 v~viD~~t~~~~~~i~~~~~-----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G-~~~~~i~~s~D 88 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGA-----PHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG-GNPRGIAVSPD 88 (369)
T ss_dssp EEEEETTT-SEEEEEE-STT-----EEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-SEEEEEEE--T
T ss_pred EEEEECCCCeEEEEEcCCCC-----ceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-CCcceEEEcCC
Confidence 36678777766655432211 11222344444 3456899999999987 455555543 34678999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceeEEEccC-------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEEec
Q 003106 650 GKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 650 g~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-------~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|++|++++ .++.|.|+|.++.+.+..+... ...+..|..++....++..-. -+.|.+-|.........+..
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99998776 5899999999999999887643 346788888998886665554 47888889877444444444
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCCEEEEEcCCCc
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
..........|+|++++++++...++.|-++|.++++.+..+... ......+-......+|.....+.
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 456678889999999988877777889999999999887766542 22333444344455666555444
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-08 Score=105.98 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=142.7
Q ss_pred CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCC--CcEEEEECCCCceeEEEcc-------
Q 003106 610 TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSS-DGKLLATGGHD--KKAVLWHTDTLKSKTNLEE------- 678 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~D--g~V~vwd~~~~~~~~~l~~------- 678 (847)
++..+|.+.+|....+.. ...+..+..+ ..+..|.-++ +..++++||.. ..++|||++..+.+..-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG 198 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc
Confidence 456778889999885521 1223333333 5677777777 44566779988 8899999997755443221
Q ss_pred --CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 679 --HSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 679 --h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
-.-+++++.|-+. ...||+++.-+.||+||.+....++..|.--...|+++...|++. ++++|..-|.|..||++
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLR 277 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheeccc
Confidence 1235789999987 779999999999999999988888999988888999999999987 45688889999999999
Q ss_pred CCceEEE-EeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCc
Q 003106 755 NGSCTRV-FKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 755 ~~~~~~~-~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~ 796 (847)
.++.... |++-.+.+.++...+. ..+..+.-|+.++|+|...
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9987766 7777888888876665 5777888899999999653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-08 Score=113.02 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=94.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.+||+.++. . ..+..+.+.+.+.+|+|||+.|+ +.+.++. |++||++++.. ..+..+...+.+..|+||
T Consensus 226 ~~i~~~dl~~g~-~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQ-R---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD 300 (435)
T ss_pred CEEEEEECCCCc-E---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC
Confidence 467788887762 2 23445566788999999999875 5555655 77789887765 446666666788999999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCc
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 757 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~ 757 (847)
|+.|+.++. +| .|++||+.. +. ...+..+...+....|+|+|+.++++.... ..|.+||+.++.
T Consensus 301 G~~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 301 GSQIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCEEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 998887764 33 588888775 33 333433455677789999999777555333 368888886554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=112.08 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred EEEcCCCCEEEE---EeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 644 CHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 644 l~fspdg~~Las---gs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
+.|..+...+.. ++++..+.+|.+..+.. ..+-+|-+.+++|+|+||+.+|+++..|..|||-........-..+.
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl 191 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL 191 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence 344444444443 34555666666665444 34558999999999999999999999999999988876333334457
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
||+..|..++.-++ ++|++++.|++|++||+++|++++++..
T Consensus 192 GH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 192 GHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 89999999999877 3567999999999999999999877764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-07 Score=107.12 Aligned_cols=173 Identities=19% Similarity=0.171 Sum_probs=111.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.++|...+ ....+..+...+...+|+|||+.|+..+.+ ..|.+||+++++... +....+.+.+.+|+|||
T Consensus 180 ~l~~~d~~g~----~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA----RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC----CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 4666777644 234455677889999999999999877654 368999998876543 33344456679999999
Q ss_pred CEEE-EEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEe-eCC
Q 003106 693 PRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-VES 766 (847)
Q Consensus 693 ~~La-sgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~-~~~ 766 (847)
+.|+ +.+.+| .|++||+.+ +. +..+..+...+....|+|+|+.++++...+| .|.+||+.+++...... ...
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred CEEEEEEccCCCceEEEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 9886 444455 588889987 43 3445556666778899999998876665554 57777888777543322 211
Q ss_pred ceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
.....+..++...++....++ .|.++|..
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 112223333333444443344 35556644
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=107.73 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
.....+.++|.... ....+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|
T Consensus 167 ~~~~~l~~~d~~g~----~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 167 SRRYELQVADYDGA----NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred CCcceEEEEcCCCC----CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 34556777776533 234455677789999999999999988754 479999999876543 3345566778999
Q ss_pred cCCCCEEEE-EeCCC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEe
Q 003106 689 SPSMPRLAT-SSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK 763 (847)
Q Consensus 689 sp~~~~Las-gs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~ 763 (847)
+||++.|+. .+.++ .|++||+.+ +. ...+..+...+....|+|+|++++++...++ .|.+||+.+++... +.
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~ 318 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDG-KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT 318 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCC-CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 999997764 44444 588899886 33 3445455555667899999998776655444 57788888776443 33
Q ss_pred eCCceEEEEEec-CCCEEE-EEcCCC--cEEEEcCC
Q 003106 764 VESFCCWCVNAM-NRPCLW-DKLDAG--DIQISDSL 795 (847)
Q Consensus 764 ~~~~~v~~~~~~-~~~~l~-~~~~~g--~i~i~d~~ 795 (847)
.+...+....+. +...++ .....+ .|.+++..
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 233333333333 223333 333332 46666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-08 Score=111.67 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=95.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
...+.+||+.++ ..+.+ ..+.+.+.+++|+|||+.|+ +.+.+| .|++||+.+++. ..+..+......++|+|
T Consensus 227 ~~~l~~~dl~~g-~~~~l---~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATG-QRELV---ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP 301 (433)
T ss_pred CcEEEEEECCCC-CEEEe---ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC
Confidence 457899999877 22333 33444556889999999775 445555 599999988765 44555655667899999
Q ss_pred CCCEEEEEeC-CCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceE
Q 003106 691 SMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs~-Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~ 759 (847)
||+.|+.++. +|. |+++|+.+ +. ...+..+......++|+|+|+.++++...++ .|.+||+.+++..
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 9998887764 455 66667765 33 2222223344557899999997776554333 6999999888755
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-09 Score=103.98 Aligned_cols=144 Identities=17% Similarity=0.301 Sum_probs=96.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEccCCCCeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
.+..|+.+.+++.++- +.....+..-...-.+.++...+++|.++.. -+..++|+++..+.+..-+.-...|+
T Consensus 106 ~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 106 IGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred ecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccch
Confidence 4667788888887652 2222222221222223333345555555432 13455666654333222222234499
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+++-+|.-. .+++|+.||.|-|||.++...++..++.|+..++.|-|||....-|++|+.||.+..||..+
T Consensus 184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999755 55778899999999999977777888999999999999998766666999999999999876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=106.73 Aligned_cols=126 Identities=21% Similarity=0.360 Sum_probs=96.4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---------------------------------------EE--CC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL---------------------------------------WH--TD 668 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~v---------------------------------------wd--~~ 668 (847)
..+....|...|..+-|+...+.+++.+.|+.+.- -. ..
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 34445567777777777776667776666643221 11 11
Q ss_pred CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 669 ~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
...++.++.+|.+.|+++.|.+....|++|..|..|.+||+--.......+.+|...|..+...+.-.. +++++.||.|
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i 264 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGI 264 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-eeeccCCCeE
Confidence 233556678999999999999999999999999999999998766677888899999999988877654 4599999999
Q ss_pred EEEECCCC
Q 003106 749 RYWSINNG 756 (847)
Q Consensus 749 ~iWD~~~~ 756 (847)
.+||++..
T Consensus 265 ~~w~mn~~ 272 (404)
T KOG1409|consen 265 VVWNMNVK 272 (404)
T ss_pred EEEeccce
Confidence 99999754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-07 Score=105.60 Aligned_cols=139 Identities=21% Similarity=0.226 Sum_probs=95.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.++|.... ....+..+...+.+.+|+|||+.|+..+.+ + .|++||+.+++... +..........+|+||
T Consensus 198 ~~l~i~d~dG~----~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDGY----NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCCC----CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence 45566676543 223455667789999999999999877543 2 58889998776532 3222334557899999
Q ss_pred CCEEEE-EeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEE
Q 003106 692 MPRLAT-SSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTR 760 (847)
Q Consensus 692 ~~~Las-gs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~ 760 (847)
|+.|+. .+.+|. |++||+.+ +. +..+..+...+...+|+|||+.++++...++. |.++|+.+++...
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~t-g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIAT-KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 998765 556665 77778876 33 44555566667889999999988777665554 6666887776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-08 Score=99.84 Aligned_cols=206 Identities=14% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCceeEEEccCC------CC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SL 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~------~~ 682 (847)
+-|.+.++++..............-+..+..+.|+- +|. .|+-+..+|.|.+|..........|++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 445666676665422221222233455677777764 555 56666778999999876444433443211 12
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceE
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCT 759 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~ 759 (847)
..++.|++.+..++++..+|.+.+-+... ... +.+++.|.-.++...|+....+++++|+.|+.+..||+| .++++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 46889999999999999999999666554 232 347889999999999998888899999999999999999 34444
Q ss_pred EE-EeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 760 RV-FKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 760 ~~-~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
.. .+.|...|.++... ....+++|+.+..|++||.+.....++... +...+|.+..++..
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEI 265 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchh
Confidence 43 55677778777644 346899999999999999876555544332 22456776665543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=105.75 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=93.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCceEEEecc
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~ 721 (847)
-++|+|+|++||+++.- .+.|-|.++.+....|.. -+.|.-|.|..|..+++++ ..|+.|.+|++..+ +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46899999999999865 889999988877665543 4567889999988877655 56889999999984 44555666
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
..+.+.+++|+|+|+.+|.+...|-.|.||.+.+.++..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 778899999999999999999999999999998876543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=115.79 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=148.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.-..+.|+.+|+.|+.|+..|.|-.+|..++.+...+.. ...|.++.|-.+..+||++- ...++|||-. +..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 345788999999999999999999999999998887753 34588999988777776664 6789999976 5677777
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~ 798 (847)
+.| ..|..+.|-|. .+||++++..|.++.-|+.+|+.+..+....+.+..+.-.+. ..+-.|..+|.|.+|......
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 766 46999999998 468889999999999999999999999887777776665443 456688899999999854322
Q ss_pred c--eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 799 A--NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 799 ~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
. .+.|. ...+.+ ++..+ .+.+++|.+.|..|+|||+..|
T Consensus 285 PLvKiLcH-----~g~V~s----iAv~~-~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 285 PLVKILCH-----RGPVSS----IAVDR-GGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred hHHHHHhc-----CCCcce----EEECC-CCcEEeecccccceeEeeeccc
Confidence 1 12222 222222 23233 6899999999999999999765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-07 Score=103.56 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=119.8
Q ss_pred CEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 651 KLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 651 ~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
+++ ++-..++.|.|.|.++.+.+.++......-..+.|+||++++++++.||.|.++|+.+ .+.+.++... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceE
Confidence 344 4555789999999999999999986655445678999999999999999999999998 6778777643 457889
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------ceEEEEEe-cCC-CEEEEEcCCCcEEEEcCCcccce
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------FCCWCVNA-MNR-PCLWDKLDAGDIQISDSLFINAN 800 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------~~v~~~~~-~~~-~~l~~~~~~g~i~i~d~~~~~~~ 800 (847)
++++||+++++++-.++.|.|+|.++.+.++.+.... ..+..+.. ... ..+++..+.+.|.+.|.......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998888889999999999999988876432 23333332 233 35667777888888774433221
Q ss_pred eeecccccCCCCccccccccccccCCCcEEEE-EeCCCeEEEEEccC
Q 003106 801 IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT-GCGDSSLSSFIAGT 846 (847)
Q Consensus 801 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s-Gs~DG~V~vW~~gt 846 (847)
...... .........|+ + +++++++ ...+..|.++|..+
T Consensus 164 ~~~~i~--~g~~~~D~~~d----p-dgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 164 KVTTIK--VGRFPHDGGFD----P-DGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp EEEEEE----TTEEEEEE-----T-TSSEEEEEEGGGTEEEEEETTT
T ss_pred ceeeec--ccccccccccC----c-ccceeeecccccceeEEEeecc
Confidence 111111 11112222333 3 4555444 45666787877654
|
... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-07 Score=92.93 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=110.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeE-EEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKT-NLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~-~l~~h~~~I~~v 686 (847)
.+..|.++++++++.+ ..+...... .-.+.++++++|++++++.++...|.+|.++. ...++ .+...++.-.+.
T Consensus 133 i~sndht~k~~~~~~~-s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGD-SNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred eccCCcceeEEEEecC-cccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 5667888888888766 222222211 12388999999999999999999999998873 33334 223344556789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe----ccCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCceEEE
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~----~~h~~~V~sl~fsp~g~~-ll~s~s~Dg~V~iWD~~~~~~~~~ 761 (847)
.|+.....+|++..||++.|||+|..+.+..+. ..|.+.|..+.|++.|.. ||+....-+.+.|.|+|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 999999999999999999999999855443332 358999999999986542 444455568999999999875554
Q ss_pred Ee
Q 003106 762 FK 763 (847)
Q Consensus 762 ~~ 763 (847)
+.
T Consensus 290 I~ 291 (344)
T KOG4532|consen 290 IV 291 (344)
T ss_pred Ee
Confidence 44
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-07 Score=95.89 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=120.2
Q ss_pred eEEEecCCCeEeecCCCeE--EeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeE
Q 003106 558 LMMFGTDGAGTLTSPSNQL--WDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~~i--WD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
..+|||+|++++..+..++ =|..+.++..-+. .+|+.+.+-.+.|. ....++.|.+|++.-. +-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EW 83 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH------HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---ee
Confidence 6689999999988776654 4555554433211 02222222222222 3456789999999865 34
Q ss_pred eEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-C-------
Q 003106 631 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D------- 701 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-D------- 701 (847)
...+......+..++|+|||+ +|.+...|-.|.||.+.+.+... +.--+..+..++|++||++.+.++. |
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 456777888999999999996 55666779999999998766543 3333445688889999888776653 2
Q ss_pred ----------------------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 702 ----------------------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 702 ----------------------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
..+.|||.-- ...+..+. ..-.+..++|+|.+. +++.|+.|+.+||.+-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-eykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-EYKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNH 239 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-hheeeeee-eccceeEEEeccccc-eEEeeccchhhhhhce
Confidence 1223333321 11122222 234688999999876 7789999999998775
Q ss_pred CC
Q 003106 754 NN 755 (847)
Q Consensus 754 ~~ 755 (847)
-+
T Consensus 240 ~t 241 (447)
T KOG4497|consen 240 FT 241 (447)
T ss_pred ee
Confidence 43
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-07 Score=104.94 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=95.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLW--HTDT-LKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vw--d~~~-~~~~~~l~~h~~~I~~v~f 688 (847)
.+..+.+|++..+...+.......+.+.+...+|+|||+.|+..+ .+|...|| +++. +.....+..+...+.+..|
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 344555677765311122222223334456789999999888766 46655555 4442 3334555555567789999
Q ss_pred cCCCCEEEEEeCC---CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEEEe
Q 003106 689 SPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 689 sp~~~~Lasgs~D---g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~~~ 763 (847)
+|||+.|+..+.+ ..|.+||+.+ +.. ..+......+....|+|||+.+++++.. +..|.+||+.+++......
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 9999988876543 3699999987 443 3333334457789999999988766654 3568888998877554443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-07 Score=103.49 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=100.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+. ...+.+.+.+|+|||++|+. .+.++ .|++||+++++.. .+..+...+....|+||+
T Consensus 224 ~l~~~~l~~g-~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 224 RIFVQNLDTG-RREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred EEEEEECCCC-CEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCC
Confidence 4566777665 222222 23344557899999998874 44455 5888899877654 455566667788999999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCCc
Q 003106 693 PRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 693 ~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|+..+. ++ .|++||+.+ +.... +...........|+|+|+.++++...++ .|.+||+.+++..........
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~-g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~ 376 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNG-GRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLD 376 (430)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCC
Confidence 98876653 33 577778876 33322 2212233446789999998776655444 588899998765332222111
Q ss_pred eEEEEEecCCCEEEEEcCCCc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~ 788 (847)
.-..++.++...++....++.
T Consensus 377 ~~p~~spdg~~i~~~~~~~g~ 397 (430)
T PRK00178 377 ESPSVAPNGTMLIYATRQQGR 397 (430)
T ss_pred CCceECCCCCEEEEEEecCCc
Confidence 112333334444455544443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=99.27 Aligned_cols=190 Identities=14% Similarity=0.246 Sum_probs=128.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCce
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
+..+.-++|++.-..||++..|-.|++||-.. ++...++. ....|+|++|.|.+ +.|+.|+. +.|.||........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34577889998767788999999999999776 44455543 34679999999975 46777774 55999987642211
Q ss_pred -------------EEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEE
Q 003106 716 -------------LRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCL 780 (847)
Q Consensus 716 -------------~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 780 (847)
+....+| ..|+++.|.+||..++ +++ .|..|+|||+.++.++.........+.-+.+. +..++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~-tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILV-TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEe-ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 2223455 6799999999998665 555 57899999999998776653333344444443 55688
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccc-cCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGW-YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
++..-++..++|..... .....+ .+...+...+|+ +|...+|++.++.-.|
T Consensus 254 faAt~davfrlw~e~q~----wt~erw~lgsgrvqtacWs----pcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQS----WTKERWILGSGRVQTACWS----PCGSFLLFACSGSPRL 305 (445)
T ss_pred EEecccceeeeehhccc----ceecceeccCCceeeeeec----CCCCEEEEEEcCCceE
Confidence 88999999999953211 111111 233466777888 5656666666655443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-07 Score=103.44 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=129.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-- 720 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-- 720 (847)
+++++.-..-|++++....|+-++++.|..+.-|....+.|++|.+++...+|++|+.||.|-+||.++ ...+.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-hhhheeeecc
Confidence 455555334455555556788899999999999988889999999999998999999999999999998 44444442
Q ss_pred ----cCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCC---CEEEEEcCCC
Q 003106 721 ----GHS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNR---PCLWDKLDAG 787 (847)
Q Consensus 721 ----~h~-----~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~---~~l~~~~~~g 787 (847)
.|. ..|++|.|+.+|= -++.|..+|.|.|||+++.+.+..-... ...+..+.+... ..| ...+..
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v-~S~Dk~ 294 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV-VSMDKR 294 (703)
T ss_pred cccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE-EecchH
Confidence 122 2499999998865 5668999999999999998876655433 334555554322 333 334556
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+++||.......... ..++ ..+-.|.-|+.++|+++-.++.+-.|-
T Consensus 295 ~~kiWd~~~Gk~~asi--------Ept~-~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASI--------EPTS-DLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred HhhhcccccCCceeec--------cccC-CcCceeeecCCceEEEecCCCcceeEE
Confidence 6888885532221110 1111 123345566888999998888776553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-06 Score=93.84 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=140.2
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CceeEE---Ec---------
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LKSKTN---LE--------- 677 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~~~~~---l~--------- 677 (847)
..+.|..|++... ..++.+..........+.+++++++++|+++.. +|.|.+|+++. +.+... +.
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 5667777777664 377777777656667788999999999999875 89999999986 443332 21
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEE---Ee-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR---TF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~---~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.......++.|+|++++|++... ...|++|+++.....+. .+ .........++|+|+++++++.+..+++|.+|
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 12345789999999999887763 55799999987432221 22 23456688999999999998899899999999
Q ss_pred ECC--CCce--EEEEeeC------CceEEEEEec-CCCEEE-EEcCCCcEEEEcCCcccceee-ecccccCCCCcccccc
Q 003106 752 SIN--NGSC--TRVFKVE------SFCCWCVNAM-NRPCLW-DKLDAGDIQISDSLFINANIF-CGLGWYGSDEIPAPSW 818 (847)
Q Consensus 752 D~~--~~~~--~~~~~~~------~~~v~~~~~~-~~~~l~-~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~w 818 (847)
++. ++.. +..+... ......+... +...+| +......|.+|+.......+. ......+... .+
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~----Pr 295 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF----PR 295 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS----EE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC----cc
Confidence 998 4432 2222211 1123344443 333444 445566688887532211111 1111111111 23
Q ss_pred ccccccCCCcEEEEE-eCCCeEEEEEcc
Q 003106 819 KVSCRSCRECCLYTG-CGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~~l~sG-s~DG~V~vW~~g 845 (847)
++...+ ++++|+++ -.++.|.+|++.
T Consensus 296 ~~~~s~-~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSP-DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeC-CCCEEEEEecCCCeEEEEEEe
Confidence 344444 45665555 577899999863
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=98.68 Aligned_cols=85 Identities=16% Similarity=0.408 Sum_probs=75.7
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
....+.++.+|.+.|+|++|.+...+|++|..|..|.+||+.-. .....+.+|...|..+...+--+.|++++.||.|-
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 45688899999999999999999999999999999999999743 34456779999999999888888999999999999
Q ss_pred EEECCC
Q 003106 706 VWDADN 711 (847)
Q Consensus 706 iWD~~~ 711 (847)
+||.+.
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.9e-07 Score=101.63 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+.+||+.++ ..+.+..+. +...+.+|+|||+.|+. .+.++. |++||+++++. ..+..+...+...+|+||+
T Consensus 243 ~L~~~dl~tg-~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 243 EIFVQDIYTQ-VREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCCC-CeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCC
Confidence 3556676665 222333232 33447899999998765 456665 77788887665 4455565667889999999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEEeeCCc
Q 003106 693 PRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 693 ~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|+..+. ++ .|+++|+.+ +... .+..........+|+|+|+.++++...++. |.++|+.+++..........
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~-g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d 395 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLAS-GKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLD 395 (448)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCC
Confidence 98876553 44 466667766 3332 222122234567999999987766655554 55578887764332221111
Q ss_pred eEEEEEecCCCEEEEEcCCCc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~ 788 (847)
.-..++.++...++....++.
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred CCceECCCCCEEEEEEecCCc
Confidence 111333344444555555544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-08 Score=108.55 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=119.5
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.+..+.+|...|+.++--.+.+.+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456789999999998888889999999999999999863 23566788999999999999998888776 79
Q ss_pred cEEEEECCCCCceEEEec--cCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCceEEEEeeC-----CceEEEEE
Q 003106 703 TVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKVE-----SFCCWCVN 773 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-----~~~v~~~~ 773 (847)
.|++||.-. +..+.... ...+.+..|..-++ ...+++.|+...+|+++|.+.++.+..++.. ...+.|++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999999865 33333111 11222333333333 3334455578899999999999877777643 34567776
Q ss_pred ec-CCCEEEEEcCCCcEEEEcCC
Q 003106 774 AM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 774 ~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
.. .+.++..+...|+|.+.|.+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecC
Confidence 43 55677788888998888865
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-08 Score=102.34 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=78.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~ 691 (847)
....+.+|....+ ....+-+|-..+++|+|+||+++|+|+..|..|||-.....-.+..| -||+..|..++.-++
T Consensus 130 D~~~~di~s~~~~----~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 130 DVYSFDILSADSG----RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred Cceeeeeeccccc----CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 3344455555432 23345689999999999999999999999999999877644444443 489999999998865
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
. .|+++|.|++|++||+++ ++.+.++.
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~s-gk~L~t~d 232 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITS-GKLLDTCD 232 (390)
T ss_pred c-eeeecCCCCcEEEEeccc-CCcccccc
Confidence 4 589999999999999998 66666553
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5e-08 Score=101.71 Aligned_cols=148 Identities=19% Similarity=0.248 Sum_probs=112.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~~~I~~ 685 (847)
.+.+..|-+.|++++. -..|. .++.|.++.|.-.+.+|+.|+..|.|.++|++.+ .+...+ -|.+.|+|
T Consensus 230 ~G~sqqv~L~nvetg~----~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGH----QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ccccceeEEEEeeccc----ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 4455667777777762 12222 5678999999998999999999999999999854 344444 58999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCCce---EEEeccCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 686 VRFSP-SMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 686 v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~---~~~~~~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+..-. ++.+|.+.+.+|+|++||.|- .++ +..+.||-..-.-+-++-+ .+.++++++.|...|||.++.|..+.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 98766 677899999999999999986 444 8899999655444444322 23366689999999999999999887
Q ss_pred EEeeC
Q 003106 761 VFKVE 765 (847)
Q Consensus 761 ~~~~~ 765 (847)
++...
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 77643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-06 Score=97.57 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=93.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT-GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.+||+.++. .+ .+..+.+.+.+++|+|||+.|+. .+.++ .|++||+.++.. ..+..+...+....|+|+
T Consensus 214 ~~i~v~d~~~g~-~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQ-RE---KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCCCC-EE---EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC
Confidence 568889988762 22 23345566778999999997764 44444 588899887654 344455555667899999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCce
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSC 758 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~~~ 758 (847)
+++|+.++. ++ .|++||+.+ +. ...+..+...+..+.|+|+++.++++. .++ .|.+||+.++..
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCCCCe
Confidence 998876654 33 577888876 33 334444556678899999998766544 443 788999987654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-06 Score=93.08 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=138.1
Q ss_pred ceEEEecCCCeE--eecCCCeEEeCCCCchhhccc------ccc-ccCCCCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 557 PLMMFGTDGAGT--LTSPSNQLWDDKDLELRADMD------RLV-EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 557 ~~v~~s~dG~~~--~~~~~~~iWD~~~~~~~~~~~------~~~-~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
+...|+.|.... ++.+...|||+.+......-- .+. ..+.-...|..+. .+..+.-..+|+|.+.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccccc
Confidence 467888888764 345566889987743322110 111 1111112222222 23566777889988763211
Q ss_pred eeEe--EEeecCCCCEEEEEEcCCCC-EE--EEEeCCC---------cEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 628 FKEA--NSVRASTSKVICCHFSSDGK-LL--ATGGHDK---------KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 628 ~~~~--~~l~~h~~~V~~l~fspdg~-~L--asgs~Dg---------~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
...+ .+| ....=..+.|++-|. +| ++...|+ ++++++++...+...+ ...++|.++.|+++++
T Consensus 207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence 1111 111 112223577887655 22 3333344 6788887733443333 3578999999999999
Q ss_pred EEEEE--eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEEEeeCCceE
Q 003106 694 RLATS--SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 694 ~Lasg--s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.|+++ -.-.+|.|||++. ..+..|. .++=+++-|+|.|..++++|-.+ |.|.|||+.+.+++..+......+
T Consensus 284 EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 77654 4577899999984 5555553 45667899999998776665543 899999999999999888877766
Q ss_pred EEEEecCCCEEEEEcC-----CCcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLD-----AGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~-----~g~i~i~d 793 (847)
...+.++...+.+.+. |..++||+
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 6665444433333322 44566776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-06 Score=96.77 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=89.5
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC---ceeEEEccCCCCeEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-----DKKAVLWHTDTL---KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~ 687 (847)
.|.+.++.++ ..+.+..+ .+.....+|+|||+.|+..+. |..+.+|++..+ +.......+...+...+
T Consensus 212 ~I~~~~l~~g-~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~ 287 (428)
T PRK01029 212 KIFLGSLENP-AGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS 287 (428)
T ss_pred eEEEEECCCC-CceEeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence 3455566655 22333333 344556899999998887653 223445777642 33333333334457889
Q ss_pred EcCCCCEEEEEe-CCCcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEEE
Q 003106 688 FSPSMPRLATSS-FDKTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVF 762 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~~ 762 (847)
|+|||+.|+..+ .+|...|| ++...+.....+..+...+....|+|||+.+++++..+ ..|.+||+.+++.....
T Consensus 288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 999999887665 46655555 44422233444555556678899999999877665543 36999999988765443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=102.82 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----cCC
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-----~h~ 680 (847)
+++.|++|++|.+.... +..+..++..|+.+|.++.|-.|-++++++ ||-|.+||.--++.+..+. +-.
T Consensus 752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~ 829 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAG 829 (1034)
T ss_pred eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCC
Confidence 67889999999987631 334677889999999999999998888876 7999999987666654332 122
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 681 SLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 681 ~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+.|.|+. +-+...+ +.|+...+|+++|.+..+ -+..+ .+-.+.+.+++..+.|.++ +.+-.+|.|.+.|.+
T Consensus 830 ~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~iaVa~~GN~l-Aa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 830 GNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRAIAVADKGNKL-AAALSNGCIAILDAR 906 (1034)
T ss_pred ceeEecc-cCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeEEEeccCcchh-hHHhcCCcEEEEecC
Confidence 3344443 1123334 444679999999999843 33333 2345678999999998855 466678999999999
Q ss_pred CCceEEEEeeC
Q 003106 755 NGSCTRVFKVE 765 (847)
Q Consensus 755 ~~~~~~~~~~~ 765 (847)
+|+.+..++.-
T Consensus 907 ~G~vINswrpm 917 (1034)
T KOG4190|consen 907 NGKVINSWRPM 917 (1034)
T ss_pred CCceeccCCcc
Confidence 99988877653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=95.90 Aligned_cols=204 Identities=16% Similarity=0.228 Sum_probs=130.9
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCce-----------------------------------eEEE-ccC
Q 003106 638 TSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKS-----------------------------------KTNL-EEH 679 (847)
Q Consensus 638 ~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~-----------------------------------~~~l-~~h 679 (847)
..+|..++|.+++. .++..+.|++|++|.+..... .+.+ .+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688899998654 566777899999998752211 0111 258
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE--EeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR--TFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~--~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
..-|.+|.++.|...++++. |=.|.+|+++-...+.. .++.+ ...|++..|||...++|+-.+..|+|++.|
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 88899999999998888775 88999999875433322 23333 345889999999888888888899999999
Q ss_pred CCCCc-e---EEEEee------------CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccc---------
Q 003106 753 INNGS-C---TRVFKV------------ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGW--------- 807 (847)
Q Consensus 753 ~~~~~-~---~~~~~~------------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~--------- 807 (847)
+|... | .+.|.. --..|..+.+.....+....+--.|++||.......+.....+
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 99532 1 112221 1223455566677677677777789999965443332221111
Q ss_pred -cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 -YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 -~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+..+.+.. -+...|. .++.+++||+....+++|++
T Consensus 323 lYEnD~Ifd-KFec~~s-g~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 323 LYENDAIFD-KFECSWS-GNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred Hhhccchhh-eeEEEEc-CCcceEecccccceEEEecC
Confidence 11111100 0111111 24568999999999999983
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=90.51 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=106.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cce--eEEEccC-----CCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKS--KTNLEEH-----SSLITDVRFSPS-MPRLATSSFDKTVR 705 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~--~~~l~~h-----~~~I~~v~fsp~-~~~Lasgs~Dg~V~ 705 (847)
.+|+-.|++|.++.|...++++ +|-.|.+|+++- ... +..++.+ +..|++..|+|. .+.|+-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3688899999999999999987 588999999872 222 2223333 356899999997 45777788899999
Q ss_pred EEECCCCCceE---------------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCC---
Q 003106 706 VWDADNPGYSL---------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVES--- 766 (847)
Q Consensus 706 iWD~~~~~~~~---------------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~--- 766 (847)
+.|+|...-|. .-|.+--+.|..|.|+.+|++++ +-+. -+|++||+. ..+.+.++..|.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 99999532211 11222345688999999998655 5442 699999994 456777776552
Q ss_pred ---------ceE----EEEEecCCCEEEEEcCCCcEEEEc
Q 003106 767 ---------FCC----WCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 767 ---------~~v----~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.+| .|....++..+++|+-...+++++
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 111 222223445667777777777776
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.1e-05 Score=86.21 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=135.8
Q ss_pred CCCCcEEEEec--cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eeEEEccCCC
Q 003106 612 PRDAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSS 681 (847)
Q Consensus 612 ~~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~vwd~~~~--~--~~~~l~~h~~ 681 (847)
...+.|.+|++ .++ .+..+..+. -......|++++++++|+++.. ++.|..|++... + .+........
T Consensus 10 ~~~~gI~~~~~d~~~g-~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETG-TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp SSSTEEEEEEEETTTT-EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CCCCcEEEEEEcCCCC-CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 34466777776 444 566555533 3455677999999999999977 468999988753 3 3333433445
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEE---ec----------cCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 682 LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~---~~----------~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
....|+++|++++|+++. .+|+|.++++...+..... +. .......++.|+|++++++++.-....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 567899999999998887 4899999999875443332 11 123557899999999988876666679
Q ss_pred EEEEECCCCc--eE--EEEeeC-CceEEEEEec-CCCEEEEE-cCCCcEEEEcCCcccce--eeecccccCCCC-ccccc
Q 003106 748 IRYWSINNGS--CT--RVFKVE-SFCCWCVNAM-NRPCLWDK-LDAGDIQISDSLFINAN--IFCGLGWYGSDE-IPAPS 817 (847)
Q Consensus 748 V~iWD~~~~~--~~--~~~~~~-~~~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~-~~~~~ 817 (847)
|++|++.... .. ..+... ....+-+.+. +...+|.. ...+.|.+++....... ............ .....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999998654 32 223322 2233444444 33444444 44556777764411111 111111111110 01122
Q ss_pred cccccccCCCcE-EEEEeCCCeEEEEEc
Q 003106 818 WKVSCRSCRECC-LYTGCGDSSLSSFIA 844 (847)
Q Consensus 818 w~~~~~~~~~~~-l~sGs~DG~V~vW~~ 844 (847)
..+...+ ++++ +++...+++|.+|++
T Consensus 248 ~~i~isp-dg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 248 AEIAISP-DGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-T-TSSEEEEEECTTTEEEEEEE
T ss_pred eeEEEec-CCCEEEEEeccCCEEEEEEE
Confidence 3333444 4555 555568889999997
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=111.36 Aligned_cols=189 Identities=11% Similarity=0.158 Sum_probs=147.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
++.+-..|.++.=+|...+.+||+.||.|++|....+..+..++ .....|+.++|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 34566778899989988999999999999999999888877775 234789999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCC---ceEEEEeeCCceEEEEEecCCC-EEEEEcC
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNG---SCTRVFKVESFCCWCVNAMNRP-CLWDKLD 785 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s---~Dg~V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~ 785 (847)
.++......|......+.|-.. ++++++ .++.|.+||.... .++. .+|...++|+.+.+.. .+++|..
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCC
Confidence 4677788899998988998863 555654 4689999997642 2444 7888888888877654 5678999
Q ss_pred CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 786 AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 786 ~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
+|.|.+||.+-.. ....+. .|+ ...+|++|+..|.|+||++..+
T Consensus 2357 ~G~v~l~D~rqrq--l~h~~~----------~~~------~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQ--LRHTFQ----------ALD------TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHH--HHHHhh----------hhh------hhheeeccCcccceEEEEcccc
Confidence 9999999965321 111111 122 3567999999999999998643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=82.65 Aligned_cols=213 Identities=16% Similarity=0.073 Sum_probs=125.8
Q ss_pred CCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
++.|..||..++. .+....- -.....+..+ .++.+|++++.++.|+.||..+|+.+..+... ..+.... ...
T Consensus 2 ~g~l~~~d~~tG~---~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGK---ELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTE---EEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEE
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eec
Confidence 5778899998873 3333321 1222332222 36677888889999999999999998887652 2221111 223
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEE-eccCC---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHS---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~h~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..+++++.|+.|+.+|.++ +..+.. ..... .....+.....+..++ .+..++.|..+|+++|+.+..+.....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY-VGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCSTB--SEEEEETTEEE-EEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCC-cceeeeeccccccccccccccCceEecCEEE-EEeccCcEEEEecCCCcEEEEeecCCC
Confidence 55777777889999999998 666655 33221 1112222222355444 666689999999999999887766432
Q ss_pred e-----------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 768 C-----------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 768 ~-----------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
. ...+... ...++....++.+..+|....... .... . .. . .......+..|++++.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~~~d~~tg~~~-w~~~-~-~~--~------~~~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DGRVYVSSGDGRVVAVDLATGEKL-WSKP-I-SG--I------YSLPSVDGGTLYVTSSD 221 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TTEEEEECCTSSEEEEETTTTEEE-EEEC-S-S---E------CECEECCCTEEEEEETT
T ss_pred CCCcceeeecccccceEEE-CCEEEEEcCCCeEEEEECCCCCEE-EEec-C-CC--c------cCCceeeCCEEEEEeCC
Confidence 2 1122222 337777777776444454433211 2111 1 11 0 00012256778888899
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
+.|.+||+.|
T Consensus 222 ~~l~~~d~~t 231 (238)
T PF13360_consen 222 GRLYALDLKT 231 (238)
T ss_dssp TEEEEEETTT
T ss_pred CEEEEEECCC
Confidence 9999999876
|
... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=97.78 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=121.7
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccC-----------------CCCeEEEEEcCC-CCEEEEEeC
Q 003106 640 KVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-----------------SSLITDVRFSPS-MPRLATSSF 700 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-----------------~~~I~~v~fsp~-~~~Lasgs~ 700 (847)
....|+|.++++.|+++. ..+.|+++|..++.. .++.+- -..-++|+|+|+ +..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457899999888766655 456899999876543 333210 012368999995 555566677
Q ss_pred CCcEEEEECCCCCceEEEeccC---------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 701 DKTVRVWDADNPGYSLRTFMGH---------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h---------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.|++||..+ +. +..+.+. ......|+|+|++++++++-+.++.|++||+.++.......+.
T Consensus 704 ~~~I~v~d~~~-g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISD-GV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCC-Ce-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 89999999986 33 2222211 1235679999999888878888899999999887533211100
Q ss_pred C---------------------ceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCC---Ccc---ccc
Q 003106 766 S---------------------FCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD---EIP---APS 817 (847)
Q Consensus 766 ~---------------------~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---~~~---~~~ 817 (847)
. .....+.++.+ ..+++...++.|.+|+........+...+..+.. ... ...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 0 01123333333 3444556677888888643222222222211100 000 111
Q ss_pred cccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 818 WKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 818 w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+...+ ++.++++-+.++.|++|++.+
T Consensus 862 ~GIavd~-dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 862 AGLALGE-NGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEEEEeC-CCCEEEEECCCCEEEEEECCC
Confidence 2222233 567888899999999999854
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=86.95 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=121.0
Q ss_pred CcceEEEecCCCeEeecCC-----CeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPS-----NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~-----~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
....+.+++||++++..+. ..+.|+.+.++..+++- .+...++...+. ....|+......+.+.-
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 3457899999999986552 27899999888776542 111222222111 11223333322222210
Q ss_pred eee--EeEEeecCCCCEEEE-EEcC-CCCEEEEEeCCCcEEEEECCC-----CceeEEEcc-------CCCCeEEEEEcC
Q 003106 627 SFK--EANSVRASTSKVICC-HFSS-DGKLLATGGHDKKAVLWHTDT-----LKSKTNLEE-------HSSLITDVRFSP 690 (847)
Q Consensus 627 ~~~--~~~~l~~h~~~V~~l-~fsp-dg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~~-------h~~~I~~v~fsp 690 (847)
... ....+..-...|..= .|.+ ||+++++... |+|.+.|+.. .+.+..+.. ..+.+.-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111 111111111111100 4455 8888887766 9999999543 333333321 223344599999
Q ss_pred CCCEEEEEe----------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceE
Q 003106 691 SMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs----------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++++|+... ..++|.++|..+ .+.+..+.- ...+..|+|++|++ .++++...++.|.|+|+.+++.+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999888743 125799999998 666666542 35799999999999 77767767899999999999999
Q ss_pred EEEe
Q 003106 760 RVFK 763 (847)
Q Consensus 760 ~~~~ 763 (847)
+.+.
T Consensus 336 ~~i~ 339 (352)
T TIGR02658 336 SSVN 339 (352)
T ss_pred eeec
Confidence 8883
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-05 Score=97.41 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeE------Eeec------CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEAN------SVRA------STSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~------~l~~------h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l 676 (847)
+...++.|++||..++.. ..+. ...+ .-.....|+|++|++.| ++-+.++.|++||++++......
T Consensus 700 ad~~~~~I~v~d~~~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EECCCCeEEEEECCCCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 445677888999877621 1110 0011 11235579999999855 45566789999999876532111
Q ss_pred cc-------------C--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc--------------
Q 003106 677 EE-------------H--------SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-------------- 721 (847)
Q Consensus 677 ~~-------------h--------~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-------------- 721 (847)
.+ + -....+|+|+++|+.+++-..+++|++||..+ +... ++.+
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-CeEE-EEeccCCcCCCCCccccc
Confidence 00 0 01246899999999888888899999999986 4332 3322
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.-.....|+++++|. ++++.+.++.|++||+++++.
T Consensus 857 ~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCcc
Confidence 123578899999986 677888899999999998865
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-07 Score=64.57 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 666 (847)
+++.++++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57888999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00014 Score=82.00 Aligned_cols=210 Identities=16% Similarity=0.023 Sum_probs=118.9
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC----C
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKV-----ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----L 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V-----~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~----~ 682 (847)
..++.+..||..++. .+..+......+ .+..+ .+..++.+..++.|..+|+++++.+........ .
T Consensus 152 ~~~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 152 TNDGRLTALDAATGE---RLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CCCCeEEEEEcCCCc---eeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 347788999998873 222222211111 11112 234778888899999999999987765431100 0
Q ss_pred ---eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 683 ---ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 683 ---I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
+..+.-+| .+..+++++.+|.|+.||.++ ++.+..... . ....... .+.+++ .++.||.|..+|..+|+
T Consensus 227 ~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~--~~~~vy-v~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 227 LERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV--DDNRLY-VTDADGVVVALDRRSGS 300 (377)
T ss_pred hhhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeecc-C-CccCceE--eCCEEE-EECCCCeEEEEECCCCc
Confidence 00111111 255788888999999999998 555544431 1 1222222 344444 66789999999999998
Q ss_pred eEEEEee-CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 758 CTRVFKV-ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 758 ~~~~~~~-~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+-.+.. .......... ....++.+..+|.+.+++.... .+................ ..++.|+.++.|
T Consensus 301 ~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~sp~-------~~~~~l~v~~~d 370 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIASPPV-------VVGDGLLVQTRD 370 (377)
T ss_pred EEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCccccCCE-------EECCEEEEEeCC
Confidence 7755532 1111121111 3457888889999999985532 222221111111111110 123568899999
Q ss_pred CeEEEE
Q 003106 837 SSLSSF 842 (847)
Q Consensus 837 G~V~vW 842 (847)
|.|..|
T Consensus 371 G~l~~~ 376 (377)
T TIGR03300 371 GDLYAF 376 (377)
T ss_pred ceEEEe
Confidence 999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00021 Score=76.13 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=140.5
Q ss_pred CcceEEEecCCCeEeecCCC----e----EEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEe
Q 003106 555 SKPLMMFGTDGAGTLTSPSN----Q----LWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~----~----iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd 621 (847)
..+-+.|+++.+.+++.... . -||-+++.+.. +.+....|... ..+-+..++ +.-..+.|.++-
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-ln~~~~~g~~p--~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-LNRQTLPGSPP--CYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-eeccccCCCCC--eEEEECCCCCEEEEEEccCceEEEEE
Confidence 34577888998877765433 1 14444444322 11111111111 111112222 222347788888
Q ss_pred ccCCceeeEeEEeecCCCC----------EEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEc---cCCCCeEEEE
Q 003106 622 VSQGFSFKEANSVRASTSK----------VICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLE---EHSSLITDVR 687 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~----------V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~ 687 (847)
+...-.+.....+..|.+. +.+..|.|++++|++++- --.|.+|+++.+++...-. .....-..|.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 8653244444444456666 889999999999999853 2369999999765543211 2344568999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEEEecc---------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~---------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~- 756 (847)
|+|++++.++.+ .+++|.+|..+.....+..+.. -......|..+++|+.|.++--....|.+|.+...
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 999999987666 5999999999874333333321 23457789999999977665555568888877643
Q ss_pred ceEEE---EeeCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccc
Q 003106 757 SCTRV---FKVESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINA 799 (847)
Q Consensus 757 ~~~~~---~~~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~ 799 (847)
..+.. ...+..+.+.+.+. .+..+.+.-+...|.+|.......
T Consensus 278 g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 278 GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 22222 22333334444443 333344444555577776544333
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-07 Score=64.97 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++++.++.+|...|++|+|+|++.+|++++.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00039 Score=74.09 Aligned_cols=142 Identities=13% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCcEEEEeccC--CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CceeE--EEccCCCC----
Q 003106 613 RDAGGRGMDVSQ--GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT-LKSKT--NLEEHSSL---- 682 (847)
Q Consensus 613 ~d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~-~~~~~--~l~~h~~~---- 682 (847)
.++.|..|.+.. | .+..+.........-+-++++++|++|+++.. -|.|.|+-+.. |.+.. .+..|.+.
T Consensus 62 ~~ggvaay~iD~~~G-~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~ 140 (346)
T COG2706 62 EEGGVAAYRIDPDDG-RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHE 140 (346)
T ss_pred CcCcEEEEEEcCCCC-eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCc
Confidence 356666555553 4 44555444444444588999999999999976 57899998864 43322 22345555
Q ss_pred ------eEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEE---eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 683 ------ITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 683 ------I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~---~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
+.+..|.|++++|++++. -..|.+|++.. +..... ...-......|.|||+++...+.+-.+++|.+|.
T Consensus 141 rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 141 RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred cccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence 889999999999988874 44699999985 432111 1123456788999999998888888899999999
Q ss_pred CCCC
Q 003106 753 INNG 756 (847)
Q Consensus 753 ~~~~ 756 (847)
....
T Consensus 220 y~~~ 223 (346)
T COG2706 220 YNPA 223 (346)
T ss_pred EcCC
Confidence 9873
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.8e-06 Score=90.32 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=97.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..++.++++... .....+ .-.++|.|+.|+++++-|+++-. =-+|.|||++ ++++..| ..++=+++.|+|.
T Consensus 250 Eq~Lyll~t~g~---s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 250 EQTLYLLATQGE---SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH 322 (566)
T ss_pred cceEEEEEecCc---eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC
Confidence 445566665521 222222 24789999999999988776643 4589999987 5666665 3456689999999
Q ss_pred CCEEEEEeC---CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCceEE
Q 003106 692 MPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTR 760 (847)
Q Consensus 692 ~~~Lasgs~---Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~V~iWD~~~~~~~~ 760 (847)
|++|+.++. -|.|-|||+.+ .+++..+..-. .+-++|+|||++++.+.+. |+.++||+.. |..++
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 999988775 57899999998 77787776544 3458999999977643333 7889999986 44443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=86.13 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V 704 (847)
.++....+.+|...|++++|+|..+ +|..++-+.+|+|.|+++..++..+..+ ..|++++|+-|.. +|+.|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 4455667788999999999999776 7888999999999999999999999888 7899999998765 67888889999
Q ss_pred EEEECCCCCceEEEecc--CCCCeEEEEEe------cCCCeEEEEEeCCCcEEEEECC
Q 003106 705 RVWDADNPGYSLRTFMG--HSASVMSLDFH------PNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~--h~~~V~sl~fs------p~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.|||++.+...+..+.+ ...+|..|+.- +.|. +++.... .+.+|++.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~ 315 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIV 315 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhh
Confidence 99999986655555443 22345444432 2233 4433332 35677664
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-06 Score=94.09 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=120.0
Q ss_pred CEEEEEEcCCC--CEEEEEeCCCcEEEEECC---CCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 003106 640 KVICCHFSSDG--KLLATGGHDKKAVLWHTD---TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 640 ~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~---~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~ 713 (847)
.|-++.|++.. .+-++.....+..||++. +......+.+|+..|+++.|+|... .|++++.|-.|..||++.+.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 46677888732 344444455667789876 2344556679999999999999754 77999999999999999988
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecC--CCEEEEEcCCCcEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQ 790 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~ 790 (847)
..+..+..-......|+|+.....++ +.+..+.|+|||++.|. .+..++++...+..+.+.. ...+|....++.++
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 88877766666778899998888777 44557789999999874 6778888777777777653 35789999999999
Q ss_pred EEcCC
Q 003106 791 ISDSL 795 (847)
Q Consensus 791 i~d~~ 795 (847)
.|+..
T Consensus 228 fw~y~ 232 (1081)
T KOG0309|consen 228 FWDYS 232 (1081)
T ss_pred eeccc
Confidence 99844
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.3e-05 Score=83.89 Aligned_cols=272 Identities=12% Similarity=0.140 Sum_probs=145.2
Q ss_pred cceEEEecCCCeEeecCC--CeEEeCCCCchhhcccc----ccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 556 KPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDR----LVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~----~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
.+.+.|||-|+++++-.- +.+|--.+......+.. ++...........|..... .......++|||+.+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 357899999999988543 36676555433322211 1221222222333322221 2334567899999999
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC--C--
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--D-- 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~--D-- 701 (847)
...+...++++....-.-..||.|++++|.-..| .|.||+..+..++..-.-.-..|....|+|.+..||--.- +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNI 371 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCC
Confidence 5544444444444444467899999999987764 6889987764443222222345666666666555443211 1
Q ss_pred -CcEE----------------------------------------------------EEECCCCCceEEEeccCCCCeEE
Q 003106 702 -KTVR----------------------------------------------------VWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 702 -g~V~----------------------------------------------------iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
.++. |+.++.....+... .-...|..
T Consensus 372 parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~ 450 (698)
T KOG2314|consen 372 PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIA 450 (698)
T ss_pred cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheee
Confidence 0111 11111111111111 12456788
Q ss_pred EEEecCCCeEEEEEeCC--CcEEEEECCC-C---ceEEEEeeCCceEEEEEecCCCE--EEE--EcCCCcEEEEcCCccc
Q 003106 729 LDFHPNKDDLICSCDGD--GEIRYWSINN-G---SCTRVFKVESFCCWCVNAMNRPC--LWD--KLDAGDIQISDSLFIN 798 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~D--g~V~iWD~~~-~---~~~~~~~~~~~~v~~~~~~~~~~--l~~--~~~~g~i~i~d~~~~~ 798 (847)
.+|.|.|..+.+..+.+ .+|.+|-+++ . +.+..|. ...+..+.+.+... +.. ++..|.+..+|..+..
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 89999998776554443 6789998874 2 2233332 23344444444332 222 2346788888876533
Q ss_pred ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 799 ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
....... .....+...|+ + .++++++++.-+..
T Consensus 529 ~k~~~~~---eh~~at~veWD----P-tGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 529 LKDTASP---EHFAATEVEWD----P-TGRYVVTSSSSWRH 561 (698)
T ss_pred hhhccCc---cccccccceEC----C-CCCEEEEeeehhhh
Confidence 2222221 12223455677 3 58889988765543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00027 Score=77.74 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=75.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccCC----
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS---- 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~---- 680 (847)
+.|.+.|..+. +.+.++..-..+- .+ ++||++.|+++.. +..|.|||+.+++.+.++..-.
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 88999999876 4555554333222 24 9999998887765 6789999999999998887422
Q ss_pred ---CCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCCceEEEec
Q 003106 681 ---SLITDVRFSPSMPRLATSS-F-DKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 681 ---~~I~~v~fsp~~~~Lasgs-~-Dg~V~iWD~~~~~~~~~~~~ 720 (847)
.....++++|||++|+... . +..|.|+|+.+ ++.+.++.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~ 145 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMD 145 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEe
Confidence 2234788999999998776 4 78999999998 66666664
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00028 Score=80.43 Aligned_cols=163 Identities=10% Similarity=0.057 Sum_probs=100.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
...+.+.|.... ....+.... .+...+|+|||+. ++..+.+ ..|.++|+.+++..... ...+.+.+.+|+
T Consensus 168 ~~~l~~~d~dg~----~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~S 241 (419)
T PRK04043 168 KSNIVLADYTLT----YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVS 241 (419)
T ss_pred cceEEEECCCCC----ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEEC
Confidence 445555555433 222233233 7889999999984 6654443 46899999887765443 355567788999
Q ss_pred CCCCEEEE-EeCC--CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEee
Q 003106 690 PSMPRLAT-SSFD--KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 690 p~~~~Las-gs~D--g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~ 764 (847)
|||+.|+. .+.+ ..|.++|+.+ +. ...+..+........|+|||+.++++....+ .|.++|+.+++.......
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNT-KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCC-Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 99987754 3333 4688888876 43 4444444443456789999998887776554 577778888876443332
Q ss_pred CCceEEEEEecCCCEEEEEcC
Q 003106 765 ESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 765 ~~~~v~~~~~~~~~~l~~~~~ 785 (847)
.. ....++.++...++....
T Consensus 320 g~-~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 320 GK-NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CC-cCceECCCCCEEEEEEcC
Confidence 21 122344444444555443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-07 Score=103.79 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC-C-cE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K-TV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D-g-~V 704 (847)
.|+...+|+.|+...+|++|+-+.++|+.|+..|.|++|++.+|.....+.+|...|+-|.-+.+|..+++.+.- . -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 567788899999999999999999999999999999999999999999999999999999999999977665543 2 47
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeC---CceEEEEEe------
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVE---SFCCWCVNA------ 774 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~---~~~v~~~~~------ 774 (847)
.+|++...+.....|.+ -.++.|+.....-++.+. ...+.|||+.++..+.++ ... ...-.+..|
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875666666653 445888866433332333 357899999998766553 221 111122222
Q ss_pred -cCCCEEEEEcCCCcEEEEcCC
Q 003106 775 -MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 775 -~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.++..+|+......|..||..
T Consensus 1245 IlndGvLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1245 ILNDGVLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred EeeCceeeeeccHHHHhhhhhh
Confidence 245667777777667777643
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.4e-05 Score=85.44 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=97.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCceeE--EE-ccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATG----GHDKKA----VLWHTDTLKSKT--NL-EEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg----s~Dg~V----~vwd~~~~~~~~--~l-~~h~~~ 682 (847)
..+.++-+..+ .++.+..++...++ .++.|+- +...+.|. +.+|.+ ++|++...+..+ .. ......
T Consensus 184 aNl~L~~~~~~-klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~ 261 (545)
T PF11768_consen 184 ANLHLLSCSGG-KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQ 261 (545)
T ss_pred ccEEEEEecCC-cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCc
Confidence 35566666665 66667666655554 6788887 55566654 345543 456765443221 11 146778
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
|.|++++|+.+.|+.|+.||+|++||... + +..+..+.-.++.++|||+|. +|++|+.-|.|.+||+.-..
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 99999999999999999999999999987 3 333334556688999999988 66688888999999997654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00023 Score=75.82 Aligned_cols=188 Identities=10% Similarity=0.108 Sum_probs=130.1
Q ss_pred eEEeCCCCchhhccc-----cccccCCCCCc-eEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 575 QLWDDKDLELRADMD-----RLVEDGSLDDN-VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~-----~~~~~g~~d~~-v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
-+||..++.....+. .|...+.+... -.+|...++.....|.|-|||... .+..+..+..|.-.-..|.+.|
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcC
Confidence 356666665543221 22223333222 233455555778889999999983 5688888888888888899999
Q ss_pred CCCEEEEEeC------------------CCcEEEEECCCCceeEE--E--ccCCCCeEEEEEcCCCCEEEEEeCCCc---
Q 003106 649 DGKLLATGGH------------------DKKAVLWHTDTLKSKTN--L--EEHSSLITDVRFSPSMPRLATSSFDKT--- 703 (847)
Q Consensus 649 dg~~Lasgs~------------------Dg~V~vwd~~~~~~~~~--l--~~h~~~I~~v~fsp~~~~Lasgs~Dg~--- 703 (847)
||+.|+++.. +-.+.+.|..+++++.. + ..|...|..+++..+|..++..-+.|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 9988887631 22466667788888776 4 347788999999999987766655442
Q ss_pred ----EEEEECCCCCceEEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 704 ----VRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 704 ----V~iWD~~~~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|.+|+... .+..+ ..-...|-+|+|+.++..+++|+-..+.+.+||..+++.+........
T Consensus 189 ~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~ 260 (305)
T PF07433_consen 189 APPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDA 260 (305)
T ss_pred cCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCce
Confidence 44554433 12222 223578999999999998888998999999999999998877665443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00036 Score=73.67 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=108.4
Q ss_pred CcEEEEeccCCceeeEeEEee--c-CCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEccCCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--A-STSKVICCHFSSDGKLLATGGHD--------KKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~-h~~~V~~l~fspdg~~Lasgs~D--------g~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
+.+.++|..++ ..+.+.... . .....+++++.++|++.++.... |.|..++.+ ++..... ..-...
T Consensus 60 ~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~p 136 (246)
T PF08450_consen 60 GGIAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFP 136 (246)
T ss_dssp TCEEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSE
T ss_pred CceEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccc
Confidence 44566788887 555555553 2 45678899999999988876644 457777776 5543333 334567
Q ss_pred EEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceE---EEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 684 TDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSL---RTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 684 ~~v~fsp~~~~La-sgs~Dg~V~iWD~~~~~~~~---~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+.|+|+|+++.|+ +-+..+.|..||+...+..+ ..+ ....+..-.+++..+|. ++++.-..+.|.++|.+ |
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G 214 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G 214 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c
Confidence 8999999999776 45678889999997533311 222 22223478899999986 66676678999999998 8
Q ss_pred ceEEEEeeCCceEEEEEec--CCCEEEE
Q 003106 757 SCTRVFKVESFCCWCVNAM--NRPCLWD 782 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~--~~~~l~~ 782 (847)
+.+..+......+.++++. +...||.
T Consensus 215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888888775566666652 3344443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=81.92 Aligned_cols=210 Identities=12% Similarity=0.030 Sum_probs=119.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE-EEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-VRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~-v~fsp~ 691 (847)
.++.+..+|..+|. .+..+.-.......... ++..++.++.|+.|+.||.++++.+....... .+.+ ..+ .
T Consensus 73 ~~g~v~a~d~~tG~---~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~ 144 (377)
T TIGR03300 73 ADGTVVALDAETGK---RLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--A 144 (377)
T ss_pred CCCeEEEEEccCCc---EeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--E
Confidence 44667777777662 23222222211112222 56788888899999999999999887765332 2222 122 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+..++.++.|+.|+.||.++ ++.+..+......+ .+..+. + . .++.+..++.|..+|+++|+.+-......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 45777788899999999998 55555544322111 111222 2 3 45577778999999999998665443211
Q ss_pred c----e------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 767 F----C------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 767 ~----~------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
. . +.+........++....++.+..+|..... .+.... . .. +. .....+..|++++.|
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~~-~-~~-------~~--~p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKRD-A-SS-------YQ--GPAVDDNRLYVTDAD 288 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEeec-c-CC-------cc--CceEeCCEEEEECCC
Confidence 0 0 000011123467777778888888864321 111111 0 00 00 011135678888899
Q ss_pred CeEEEEEccC
Q 003106 837 SSLSSFIAGT 846 (847)
Q Consensus 837 G~V~vW~~gt 846 (847)
|.|..++..+
T Consensus 289 G~l~~~d~~t 298 (377)
T TIGR03300 289 GVVVALDRRS 298 (377)
T ss_pred CeEEEEECCC
Confidence 9999888754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=90.30 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=151.9
Q ss_pred cceEEEecCCCeEeecCCC-eEEeCCCCchhhccccccccCCCCCceEEeeec---------C------CCCCCCCcEEE
Q 003106 556 KPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSH---------D------DTDPRDAGGRG 619 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~-~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~---------d------~t~~~d~~v~v 619 (847)
...+.|+|.|-..+++++. .+-|..+......+.... .+.+...|... . .++...|.|.+
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 4456677777655554433 566666655544332211 11111112110 0 14667889999
Q ss_pred EeccCCceeeEeEEeecCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCE
Q 003106 620 MDVSQGFSFKEANSVRASTSKVICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPR 694 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~ 694 (847)
||...+ ..+..+..|.++|-+++|-+ +. .+|+.-....+|.+|+.++|+.+.++........|+.+.| |.++
T Consensus 94 ~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 94 VDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999876 45666788999999999977 44 4666666778999999999999988876666778899999 4556
Q ss_pred EEEEeCCCcEEEEECCC------CCceEEEeccCCC----------------C---------eEEEEEecCCCeEEEEEe
Q 003106 695 LATSSFDKTVRVWDADN------PGYSLRTFMGHSA----------------S---------VMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~------~~~~~~~~~~h~~----------------~---------V~sl~fsp~g~~ll~s~s 743 (847)
|+.-+..|.|.+-+.-. +++.+..-..|.+ . ...++|+|.-++++ ...
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~ 249 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FIT 249 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEE
Confidence 76666677777776532 1222222222222 0 12346788766665 334
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEE---ecCCCEEEEEcCCCcEEEEcCCc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVN---AMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~---~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
....+.|+|++-..|+.+.......+..+. ......++++..+|.+.+|-...
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 467899999999999988887776544443 34567899999999999997554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=83.02 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=62.8
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-eeEEEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003106 639 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 639 ~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~ 711 (847)
..|.+++-+| ....+++|+.||.|.|||++... ++..++.|+.+|+.|-|+|. +..|++++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3499999999 45678888999999999999764 44567899999999999996 67899999999999999985
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=83.16 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=87.4
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCC--CcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~D--g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..|.++|+.++ ..+.+ ....+.+.+.+|+|||+.|+.. +.+ ..|.++|+.+++. ..+..+........|+||
T Consensus 213 ~~Iyv~dl~tg-~~~~l---t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTG-KKEKI---ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED 287 (419)
T ss_pred CEEEEEECCCC-cEEEE---ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC
Confidence 35777888776 22232 2345567778899999877654 333 4688889887764 344444443456689999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCceE
Q 003106 692 MPRLATSSF-DK--TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCT 759 (847)
Q Consensus 692 ~~~Lasgs~-Dg--~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~D--------g~V~iWD~~~~~~~ 759 (847)
|+.|+..+. .+ .|.++|+.+ +...+. +.+. ....|+|+|+.+++++..+ ..|.+.|+.++...
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCC-CCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 998876653 33 588888876 443222 2222 1258999999887776543 36788888887643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00023 Score=78.42 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=133.3
Q ss_pred ceEEEecCCCeEeecC------------------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCc
Q 003106 557 PLMMFGTDGAGTLTSP------------------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAG 616 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~------------------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~ 616 (847)
--+.|+|.|.+|.+-. ...+||+.++.+...+.-..-.- +.=.+.-|...|. .-.....
T Consensus 75 ~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 75 KYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred eecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhhccCe
Confidence 4456788888776622 12679999887766543322110 0001223333333 2223456
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEE-----EeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLAT-----GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Las-----gs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+.++++.......+...++ ...|....|+|. +..||. .+.++.++||.+.....+.+..-....=..+.|.
T Consensus 154 l~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred EEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 7788873332323333333 467889999995 344553 4668899999998666655433222233468889
Q ss_pred CCCCEEEEEe-----------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCc
Q 003106 690 PSMPRLATSS-----------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGS 757 (847)
Q Consensus 690 p~~~~Lasgs-----------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s-~s~Dg~V~iWD~~~~~ 757 (847)
+.|++|++-- ....++|++++. ..+....+-.+.|...+|.|.++.+.+. |-.+-.+.++|++..
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 9888764421 134578888875 3334333668899999999998876543 356788999999866
Q ss_pred eEEEEeeCCceEEEEEecCCCEEEEE--cCCCcEEEEcCC
Q 003106 758 CTRVFKVESFCCWCVNAMNRPCLWDK--LDAGDIQISDSL 795 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~~~~l~~~--~~~g~i~i~d~~ 795 (847)
.+..+.........+.......++.+ ...|.+.+|+..
T Consensus 309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred eEEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 33333322222222222233334433 234667777743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=78.31 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=100.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~ 714 (847)
+|...|.-..+..+++-++.|..|| .|.|||.++++..+ +...-+.|.+|..+++|++++.+.....|.+.|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 5778899999999999999999999 89999999877654 455667899999999999999999999999999998 55
Q ss_pred eEEEeccCCCCeEEEEEecCCCeEEEEEeCC----CcEEEEECCCCceEEEE
Q 003106 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVF 762 (847)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D----g~V~iWD~~~~~~~~~~ 762 (847)
....-+...+-|+.++|||+++++ |-+--+ ..|+++|+.+++.....
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec
Confidence 444445566889999999998754 444434 46899999988765543
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-06 Score=57.07 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcC
Q 003106 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (847)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (847)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999885
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=84.91 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceEE
Q 003106 644 CHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLR 717 (847)
Q Consensus 644 l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----~~~~~ 717 (847)
|+|+- .|-. ++.+.+-.|-+-|++++-.- .|. .++.|.++.|.-.++.++.|+.+|.|.++|+|.. +.+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35553 2333 45566778999998876442 332 5677999999999999999999999999999975 45566
Q ss_pred EeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEE---ecCCCEEEEEcCCCcEE
Q 003106 718 TFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVN---AMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~---~~~~~~l~~~~~~g~i~ 790 (847)
.+. |.+.|+++..-. ++.+| ++.+-+|+|++||+|--+| +..+.+|.....-+. ......|+++.+|...+
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEE-cCcchhhhhhhccccceE-eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 664 889999988766 44544 4777899999999998777 888888755332221 23456777888888899
Q ss_pred EEcCCccc
Q 003106 791 ISDSLFIN 798 (847)
Q Consensus 791 i~d~~~~~ 798 (847)
+|.....+
T Consensus 372 iWsl~~gh 379 (425)
T KOG2695|consen 372 IWSLDSGH 379 (425)
T ss_pred EEecccCc
Confidence 99866433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.2e-05 Score=84.93 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=72.0
Q ss_pred EEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEE
Q 003106 618 RGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~La 696 (847)
++|++..+ .++.+... -.....|.|++++|+.+.|+.|+.||.|++||...+... +....-.++.++|+|+|..|+
T Consensus 239 ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 46666654 33433322 257789999999999999999999999999998765333 223445678999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 003106 697 TSSFDKTVRVWDADN 711 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~ 711 (847)
+|+.-|.|.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999975
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.4e-05 Score=88.18 Aligned_cols=185 Identities=17% Similarity=0.125 Sum_probs=121.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~ 717 (847)
.+.++|++++ +++|+.|+.+|.|++++.. +.. .+...|+.. ..+|++++||+.||+|.|..+.+. ....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~-~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD-DEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC-ccce
Confidence 4668888886 6799999999999999976 333 444455544 667999999999999999998873 3333
Q ss_pred EeccCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECCCC--ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 718 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNG--SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp~----g~~ll~s~s~Dg~V~iWD~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
++. ...++.+|+++|+ ....+++|+.-| |.++.-+-- +.-..+....+.|.++.+.+....|+... -|++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~--Gv~v 183 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDD--GVKV 183 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCC--CcEE
Confidence 332 3467999999998 223466888777 777654421 11124566677899999888878887543 4667
Q ss_pred EcCCcccceeeecccc---cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 792 SDSLFINANIFCGLGW---YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+|.............. ......+...|. ++..|+.|-+| +|+|..+
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~------~~~~LVIGW~d-~v~i~~I 232 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ------DEDRLVIGWGD-SVKICSI 232 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEec------CCCeEEEecCC-eEEEEEE
Confidence 7755333222211111 112222333444 56778888777 5666654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00036 Score=72.34 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=70.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-------CCCCeEEEEEcCCC------CEEEEEeCCCcEEEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVW 707 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~I~~v~fsp~~------~~Lasgs~Dg~V~iW 707 (847)
=+-++|+||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+-. ..|++...+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45689999999999999999999999874 33333321 23557777775532 256777788888877
Q ss_pred ECCC----CCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCC
Q 003106 708 DADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 708 D~~~----~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
-+.. ......+|. .+...|.++.|+|...-|++.|....
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 7632 122233332 24668999999999876665554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-05 Score=86.93 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=98.1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..+|.+++.+.... . .+...|... ..+|++++||+.||+|.|..+.+.+...++. ...+|.+|+++|
T Consensus 55 GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~P 122 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHP 122 (846)
T ss_pred ccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEecc
Confidence 455666666665432 1 223334333 4589999999999999999999888777664 456899999999
Q ss_pred C-----CCEEEEEeCCCcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 691 S-----MPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 691 ~-----~~~Lasgs~Dg~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+ .+.+++|+.-| |.++.-+=.+... ..+....+.|.+|+|..+ +++-++.+ -|+|||+.++..+..+..
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCC-CcEEEeccccceeeccCC
Confidence 8 56899999888 7776543211111 134556789999999844 77677655 599999999887777665
Q ss_pred CC
Q 003106 765 ES 766 (847)
Q Consensus 765 ~~ 766 (847)
..
T Consensus 198 p~ 199 (846)
T KOG2066|consen 198 PS 199 (846)
T ss_pred CC
Confidence 43
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=82.79 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=104.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCceeEEEccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD------G------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd------g------~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..|.+.|.. ..+.+..+.-|...|+.+.|.|- + -+||++...|.|.|||...+..+..+..|.+.
T Consensus 35 slV~VVDs~---s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~ 111 (1062)
T KOG1912|consen 35 SLVSVVDSR---SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDS 111 (1062)
T ss_pred ceEEEEehh---hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcc
Confidence 345666665 45778888899999999999872 1 26778888899999999999888889999999
Q ss_pred eEEEEEcCC---C-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 683 ITDVRFSPS---M-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 683 I~~v~fsp~---~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
|.+++|-+. . ..|+.-....+|.+|+..+ |..+..+........|+.|+|-..+.|+.-+..|.|.+.+.-
T Consensus 112 ~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 112 VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred hhheeeeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 999999763 3 4667777789999999999 555655554455677899999766555555667888777653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0004 Score=86.27 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=128.5
Q ss_pred CCCcEEEE----eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--------------
Q 003106 613 RDAGGRGM----DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 613 ~d~~v~vw----d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-------------- 674 (847)
.+|.|-+. +.... ..+.+.. -...|.|++||||+.+|+..+.+++|.+.+-+ ..++.
T Consensus 95 ~~Gdi~~~~~~~~~~~~-~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~ 169 (928)
T PF04762_consen 95 ASGDIILVREDPDPDED-EIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKH 169 (928)
T ss_pred CCceEEEEEccCCCCCc-eeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCce
Confidence 45556665 44333 3344444 45789999999999999999999998886421 11111
Q ss_pred ----------EEcc------------------------CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCCc
Q 003106 675 ----------NLEE------------------------HSSLITDVRFSPSMPRLATSSF---D---KTVRVWDADNPGY 714 (847)
Q Consensus 675 ----------~l~~------------------------h~~~I~~v~fsp~~~~Lasgs~---D---g~V~iWD~~~~~~ 714 (847)
.|.| +.+.-..|+|..||.+||+.+. + ..||||+-+ +.
T Consensus 170 VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~ 247 (928)
T PF04762_consen 170 VSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GE 247 (928)
T ss_pred eeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ce
Confidence 1110 2223457889999999988774 3 469999986 44
Q ss_pred eEEEeccCCCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCceEEEEee----CCceEEEEEecCCCEEEEEcCCC
Q 003106 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKV----ESFCCWCVNAMNRPCLWDKLDAG 787 (847)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~~g 787 (847)
...+...-.+--.+++|.|.|. ++|+.-. ...|.+|. |+|-....|.. ....|..+.+..+..+.+..-..
T Consensus 248 L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 248 LQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred EEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 4444444444456799999997 5655543 24455665 34444444433 34567777777666665555555
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.|.+|.....+--......+..........|+ +-+...|...+.+|.+.+++.
T Consensus 326 ~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd----pe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 326 RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWD----PEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CceEEEeeCCEEEEEEEEEccCCCCCCceEEC----CCCCCEEEEEecCCcEEEEEE
Confidence 68888744322211111111122222335566 334556667766666665554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-05 Score=88.25 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=121.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
++.-..+..+|+.+. ++.....-..+.|+-++. ++++|++|...|+|.+-|..+.+.++++.+|++.|.+++..
T Consensus 153 Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~- 226 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ- 226 (1118)
T ss_pred cchhhheeeeecccc---eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc-
Confidence 344445666777755 333333333334665554 68899999999999999999999999999999999886655
Q ss_pred CCCEEEEEeC---------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---C-c
Q 003106 691 SMPRLATSSF---------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---G-S 757 (847)
Q Consensus 691 ~~~~Lasgs~---------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---~-~ 757 (847)
|+.|++|+. |..|+|||+|. -..+.-+.-+.+ ..-+.|+|.-...++.++..|.+.+-|..+ . .
T Consensus 227 -GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 227 -GNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred -CCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 889999874 56689999997 343433333333 255889998777777888899999999443 2 1
Q ss_pred eEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 758 CTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.+..+......+..+++. ++..+..+..+|.|.+|.
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 223333334435545443 556777888899999997
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.2e-05 Score=79.89 Aligned_cols=163 Identities=17% Similarity=0.236 Sum_probs=109.1
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCC--ce----------------------------------------eE
Q 003106 639 SKVICCHFSSDGK--LLATGGHDKKAVLWHTDTL--KS----------------------------------------KT 674 (847)
Q Consensus 639 ~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~--~~----------------------------------------~~ 674 (847)
..|..+.|..++. .++..+.|++|++|.+... ++ .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4688888887553 4666678999999987432 00 00
Q ss_pred EE-ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEeccCC-----CCeEEEEEecCCCeEEEEEeCCC
Q 003106 675 NL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHS-----ASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 675 ~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~h~-----~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
.+ ..|...|.+|.|+.|...++++. |-.|.+|+++....+. ..++.|. ..|++..|+|....++.-.+..|
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred eccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 11 24777789999999888777765 8889999987644332 3334443 45889999998777777777789
Q ss_pred cEEEEECCCCc-eE---EEE------------eeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceee
Q 003106 747 EIRYWSINNGS-CT---RVF------------KVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF 802 (847)
Q Consensus 747 ~V~iWD~~~~~-~~---~~~------------~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~ 802 (847)
+|++-|+|... |. +.+ ......+..+.+....++....+--.+.+||.......+.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pik 316 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIK 316 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCce
Confidence 99999998421 11 111 1112334555667777777777778899999665544433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00034 Score=71.40 Aligned_cols=182 Identities=9% Similarity=-0.017 Sum_probs=111.7
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH-FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~-fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++..|...+|...+... .......|...|+-+. ++-..-.+..++.|.++++++++-+.....+....-.+.++.++
T Consensus 90 gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s 167 (344)
T KOG4532|consen 90 GGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS 167 (344)
T ss_pred ccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEc
Confidence 44556667777665421 1122223333332211 11122346677889999999887544333322122338899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEE--eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-----
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----- 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~----- 762 (847)
++++++++.++...|-.|.++..++.+.. .....+.-.+..|+.... .+|++..||++.|||+|.......+
T Consensus 168 nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr 246 (344)
T KOG4532|consen 168 NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTR 246 (344)
T ss_pred CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccC
Confidence 99999999999999999999875444333 233455667889998755 7889999999999999975433222
Q ss_pred eeCCceEEEEEecC--C-CEEEEEcCCCcEEEEcCC
Q 003106 763 KVESFCCWCVNAMN--R-PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 763 ~~~~~~v~~~~~~~--~-~~l~~~~~~g~i~i~d~~ 795 (847)
..|.+.++.+.+.. . ..++....-+.+.+.|.+
T Consensus 247 p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 23566666666552 2 233333344556666644
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00047 Score=85.62 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=121.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~vw----d~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
...+.|.++.|.+|...|+.+..+|.|.++ |..+... .....-...|.|++||||...|+..+.+++|.+-+..-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 5443322 22223456799999999999999999899888764321
Q ss_pred C----------------------CceEEEecc------------------------CCCCeEEEEEecCCCeEEEEEe--
Q 003106 712 P----------------------GYSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 743 (847)
Q Consensus 712 ~----------------------~~~~~~~~~------------------------h~~~V~sl~fsp~g~~ll~s~s-- 743 (847)
. |+.-..|.| +.+.-..|+|..||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 000001100 2334567999999996655443
Q ss_pred CC---CcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcC----CCcEEEEcCCcc-cceeeecccccCCCCccc
Q 003106 744 GD---GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLD----AGDIQISDSLFI-NANIFCGLGWYGSDEIPA 815 (847)
Q Consensus 744 ~D---g~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~ 815 (847)
.+ ..||||+-+ |....+-..-.+.-.++++.+...+.++.. ...|..|+.... +..+..++ ......+..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeE
Confidence 22 579999876 554333332222223344433332222221 234555553322 22222222 112233455
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..|+ ++..+|++...|. |.+|..+.|
T Consensus 310 l~Wn-----~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 310 LAWN-----SDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEEC-----CCCCEEEEEecCC-ceEEEeeCC
Confidence 5666 3677888877665 999999887
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=73.75 Aligned_cols=214 Identities=9% Similarity=-0.014 Sum_probs=116.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEE-EEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-------C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVI-CCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-------L 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~-~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-------~ 682 (847)
.++.+..+|..+|. .+..+......+. ...-+| .+..++.++.++.|..+|..+++.+..+..... .
T Consensus 168 ~~g~l~ald~~tG~---~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGA---VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCC---EeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 46678888888773 2222221110000 000011 234577778899999999999887665432110 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 683 ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 683 I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
...+..+| .+..|+.++.+|.+..+|+.+ +..+-...- .....+.. .+..++ .++.||.|..+|.++|+.+-
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~~~vy-~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DGGRIY-LVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--ECCEEE-EEcCCCeEEEEECCCCcEEE
Confidence 11111222 255777888899999999998 544433321 11222222 234444 66779999999999997654
Q ss_pred EEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 761 VFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 761 ~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
...................++.+..+|.+.++|..... +.......+....... -..+..|++++.||.|+
T Consensus 319 ~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~--~~~~~~~~~~~~~s~P-------~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 319 SQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR--FVAQQKVDSSGFLSEP-------VVADDKLLIQARDGTVY 389 (394)
T ss_pred cccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC--EEEEEEcCCCcceeCC-------EEECCEEEEEeCCceEE
Confidence 33321111111111234577888888988888865322 2221111111111110 01255799999999999
Q ss_pred EEEc
Q 003106 841 SFIA 844 (847)
Q Consensus 841 vW~~ 844 (847)
.+++
T Consensus 390 ~~~~ 393 (394)
T PRK11138 390 AITR 393 (394)
T ss_pred EEeC
Confidence 8874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=79.11 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=97.4
Q ss_pred CCCCC-cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDA-GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~-~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..|+ .+.++|..++ ++..+...-+.|.+++.++||++++.+.+...|.++|++++.....-+...+-|+.++||
T Consensus 377 gt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~ 452 (668)
T COG4946 377 GTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH 452 (668)
T ss_pred eccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc
Confidence 44566 7788998876 455666778899999999999999999988999999999998866666677889999999
Q ss_pred CCCCEEEEEeCCC----cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 690 PSMPRLATSSFDK----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 690 p~~~~Lasgs~Dg----~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
|++++||-+--+| .|+|+|+.. ++..... ...+.=.+-+|.|++++|..
T Consensus 453 ~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 453 PNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCceeEEEecCcceeeeeEEEEecCC-CeEEEec-CCcccccCcccCCCCcEEEE
Confidence 9999998876555 599999997 4443332 23344456789999887643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=87.06 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=91.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------eeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------------SKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---------------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.+....|+.|+....+||+|+.||.++|..+++.. .-.++.+|...|.-+.|+.....|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568899999999999999999999999776421 123578999999999999998899999999
Q ss_pred CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 702 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|-|.||-+-.+..+-..+ ...++.|.+++|.-+|..+ +..-.||.|.|=.+..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeecc
Confidence 999999987743322222 2346779999999999865 4666788887665553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0024 Score=67.36 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=107.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----CCCCeEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~I~~v 686 (847)
..+.|..|+..++. ...+.... ...+++. +++ .|+.+..+ .+.++|..+++....+.. .....+++
T Consensus 20 ~~~~i~~~~~~~~~----~~~~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~ 91 (246)
T PF08450_consen 20 PGGRIYRVDPDTGE----VEVIDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDV 91 (246)
T ss_dssp TTTEEEEEETTTTE----EEEEESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEE
T ss_pred CCCEEEEEECCCCe----EEEEecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceE
Confidence 35677778877662 11122222 6777777 565 45555554 456669988866544432 33568899
Q ss_pred EEcCCCCEEEEEeCC--------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 687 RFSPSMPRLATSSFD--------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 687 ~fsp~~~~Lasgs~D--------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
++.++|++.++.... |.|..++.. +. +..+...-...+.|+|+|+++.++++-+..+.|..||+.....
T Consensus 92 ~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 92 AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecccccc
Confidence 999999977766543 456666665 23 3333333456889999999998887888889999999964321
Q ss_pred ----EEEE---eeCCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 759 ----TRVF---KVESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 759 ----~~~~---~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
...+ .........+..+....||.+. ..+.|.+++..
T Consensus 169 ~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 169 ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1222 2222346667777777777654 57778888754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.9e-05 Score=76.76 Aligned_cols=205 Identities=18% Similarity=0.232 Sum_probs=120.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCC------------CCeEEEEEcCCCC--EEEE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHS------------SLITDVRFSPSMP--RLAT 697 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~------------~~I~~v~fsp~~~--~Las 697 (847)
..+.|+++.|...|.+|+||...|.|.+|.-+.. +....|.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3567999999999999999999999999976532 2223344443 3477888876643 6777
Q ss_pred EeCCCcEEEEECCCC------------------Cc------------------e-----EEEe-ccCCCCeEEEEEecCC
Q 003106 698 SSFDKTVRVWDADNP------------------GY------------------S-----LRTF-MGHSASVMSLDFHPNK 735 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~------------------~~------------------~-----~~~~-~~h~~~V~sl~fsp~g 735 (847)
.+.|++|++|.+... +. . .+.+ ..|.-.|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999998652 00 0 1111 3466678999999997
Q ss_pred CeEEEEEeCCCcEEEEECCCCc-e--EEEEeeCC-----ceEEEEEecC--CCEEEEEcCCCcEEEEcCCc-----ccce
Q 003106 736 DDLICSCDGDGEIRYWSINNGS-C--TRVFKVES-----FCCWCVNAMN--RPCLWDKLDAGDIQISDSLF-----INAN 800 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~-~--~~~~~~~~-----~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~-----~~~~ 800 (847)
..+| ++. |-.|.+|++.--. + +..++.+. ..+.+..+.. ...+.-.+..|.|++.|.+- ....
T Consensus 185 et~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7555 554 7789999887432 2 22222221 2233333332 23445566778888887541 1111
Q ss_pred eeec----ccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 801 IFCG----LGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 801 ~~~~----~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.. ..+..-..+...+-++.+.. ++++|++-+.- +|+|||+.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvn 309 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVN 309 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecc
Confidence 1110 00001111122222333333 56677766554 89999985
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00087 Score=69.56 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=104.9
Q ss_pred CcceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEE--eeecCCCC---------CCCCcEEEE
Q 003106 555 SKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVES--FLSHDDTD---------PRDAGGRGM 620 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~--~~s~d~t~---------~~d~~v~vw 620 (847)
.-.-++||||+..++.+.+ ++++|+...++...-......+.+...|.. |.....+. ..+|.++-+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3457899999998877544 388988764433211111122333333332 22222111 123344444
Q ss_pred eccC--CceeeEeEEee--c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 621 DVSQ--GFSFKEANSVR--A-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 621 d~~~--~~~~~~~~~l~--~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
-+.. ...+.+..++. . +...|.++.|+|.-++|++||.... +++. -++....+++-++-.+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcE
Confidence 4322 22344444433 2 4678999999999888888775432 0000 01122233333332222211
Q ss_pred --EEEeCCCc------EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 696 --ATSSFDKT------VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 696 --asgs~Dg~------V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++...|+. ..+|.+-+ ...........+.|..|..+|||. +||+...+|.|.+|++.+-+....++.+
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence 12222221 23333322 111111123467899999999988 6679999999999999988777776643
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00023 Score=76.44 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=80.2
Q ss_pred EEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEE
Q 003106 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (847)
Q Consensus 662 V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 740 (847)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ..++..+..+ ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 56666556666666678889999999999877 788899999999999998 6677777777 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCc
Q 003106 741 SCDGDGEIRYWSINNGS 757 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~ 757 (847)
+|...|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999999754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00087 Score=76.34 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=121.0
Q ss_pred cceEEEecCCCeEeecCCCe---EEeCCCCchhhcc------cccccc---CCCCCceEEeeecCC-----CCCCCCcEE
Q 003106 556 KPLMMFGTDGAGTLTSPSNQ---LWDDKDLELRADM------DRLVED---GSLDDNVESFLSHDD-----TDPRDAGGR 618 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~~---iWD~~~~~~~~~~------~~~~~~---g~~d~~v~~~~s~d~-----t~~~d~~v~ 618 (847)
-..+.|.-...+++.++.+. +..+.+....... ..+... .++...|...-..+. +...+|.|-
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 35778888888888888773 3333322111111 111111 223334443322222 777889999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEccCCCCeEEEEEcCCCCEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
+|-+.++ .|-+.-.-...++.|.+++|+.||..|+..-.||.|.|=.++..+.. +.+++ .-...+.|++|.+.++.
T Consensus 97 VWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 97 VWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEeeecc-cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHh
Confidence 9999988 44333333445678999999999999999999999999887743322 12222 12347889999998888
Q ss_pred EeCCCcEEEEECCCCC------ceEEE----eccCCCCeEEEEEe--------cCCCeEEEEEeCCCcEEEEECCC
Q 003106 698 SSFDKTVRVWDADNPG------YSLRT----FMGHSASVMSLDFH--------PNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~------~~~~~----~~~h~~~V~sl~fs--------p~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+-.+|.+.+||..... .+... +......|-.+.|. |+.. .|+.|-.+|.+.|-.-.+
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcC
Confidence 8889999999986421 11111 11122346667764 4555 455777778877654443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=87.29 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=114.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeE--------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~-------------- 674 (847)
+++.|+.++.|--..-...+.+..+..|...|.+++.+-|+.+++|++. |+.++++|+++...+.
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv 104 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV 104 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe
Confidence 5666777777775543345667778889999999999999999999887 9999998875422110
Q ss_pred ----------------------------------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----Cce
Q 003106 675 ----------------------------------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP-----GYS 715 (847)
Q Consensus 675 ----------------------------------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~-----~~~ 715 (847)
.-+-|..+|.++.+.+.++.+++....|.|..|..+.. ...
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l 184 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL 184 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence 01237889999999999999999999999999998731 111
Q ss_pred ---------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 716 ---------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 716 ---------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+..+........++.|+|++.. +.+-..|..|+++++++|+.+..+.
T Consensus 185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 185 NFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhh
Confidence 2222334667889999999885 4577789999999999998776654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00027 Score=76.77 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=135.2
Q ss_pred CcceEEEecCCCeEeecCC----CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------CCCCCCcEEEEecc
Q 003106 555 SKPLMMFGTDGAGTLTSPS----NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVS 623 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~----~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------t~~~d~~v~vwd~~ 623 (847)
.+.+++.+-||....+... .+++|+.+.+...-+. ...+.+.++++.+..+ +...++.+.++|-.
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK----L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK----LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc----cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence 3455677788887766333 4889998876554222 2224444444444442 44556778888866
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-----ceeEE---------EccCCCCeEEEEE
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-L-----KSKTN---------LEEHSSLITDVRF 688 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~-----~~~~~---------l~~h~~~I~~v~f 688 (847)
.+ .......-+-|..+|.++.+.+.+..+++....|.|..|..+. . +.... +.......+++.|
T Consensus 131 ~d-~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 131 GD-FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred CC-cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 54 2233333456999999999999999999999999999999872 1 11111 2234567889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEe--------------------------------ccCCC-CeEEEEEecCC
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTF--------------------------------MGHSA-SVMSLDFHPNK 735 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~--------------------------------~~h~~-~V~sl~fsp~g 735 (847)
+|++..+.+-+.|.+||++++++ +..+..+ ..|.. .-+.++|...+
T Consensus 210 sp~g~qistl~~DrkVR~F~~Kt-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~ 288 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKT-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG 288 (558)
T ss_pred ccccCcccccCcccEEEEEEecc-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC
Confidence 99999999999999999999987 3332221 12322 23567788888
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
..+| -++-= -|+|.++.++.+++.+.
T Consensus 289 ~fll-y~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 289 NFLL-YGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred CEEE-eecce-eEEEEEeecCeEEEEec
Confidence 7665 44432 48999999998888764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00021 Score=83.43 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. ++++|++|...|+|.+-|.++ .+.+.++..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 5567888888888999999988887776655555655554 478999999999999999998 7889999999999977
Q ss_pred EEEecCCCeEEEEEeC---------CCcEEEEECCCCceEEEEeeCCce-EEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 729 LDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKVESFC-CWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~---------Dg~V~iWD~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
++.+ |. +|++|+. |..|+|||+|.-+.+.-+..+... ...+...-...+...+..|...+.|.....
T Consensus 223 fDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 7766 43 6668875 556899999987766554433222 111111122344555566666665522111
Q ss_pred ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 799 ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
....... ...........++ ...++..++.|..+|.|.+|.
T Consensus 300 NP~~~~~-~v~p~~s~i~~fD---iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVK-MVNPNGSGISAFD---ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCcccee-EEccCCCcceeEE---ecCCCceEEEecccCcEeeec
Confidence 1100000 0000001112222 234678999999999999996
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=70.06 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=108.3
Q ss_pred eEEEecCCCeEeecCCC--------eEEeCC-CCchhhccccccccCCCC-----CceEEeeecCC--C-----------
Q 003106 558 LMMFGTDGAGTLTSPSN--------QLWDDK-DLELRADMDRLVEDGSLD-----DNVESFLSHDD--T----------- 610 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~--------~iWD~~-~~~~~~~~~~~~~~g~~d-----~~v~~~~s~d~--t----------- 610 (847)
.-+||+||+++++.-.+ .+||+. ....+.++...- .+.++ +.-.+++...+ +
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 34899999999886443 689998 444444333210 01110 01111222222 1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEEEc----
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKK-------AVLWHTDTLKSKTNLE---- 677 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~-------V~vwd~~~~~~~~~l~---- 677 (847)
...+-.+...|..+| .+.....+ .-|...|+.|++..+|..++.+-+.|. |.+++.. +.+..+.
T Consensus 134 ~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~ 210 (305)
T PF07433_consen 134 DTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEE 210 (305)
T ss_pred hhcCCceEEEecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChH
Confidence 222344556677777 33444445 458889999999999987777655442 4444433 2233222
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 678 ---EHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 678 ---~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
.-...|-+|+|+.++.++++.| ..+.+.+||..+ +..+.... -..++.|+..+++ +++|.+ .|.|..
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~--l~D~cGva~~~~~--f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVP--LPDACGVAPTDDG--FLVSSG-QGQLIR 281 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccc--cCceeeeeecCCc--eEEeCC-CccEEE
Confidence 2346799999999998875555 788999999998 66655543 2346777777665 454444 455433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=75.18 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=106.4
Q ss_pred CCcEEEEeccCCce---eeEe--EEeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEEccC
Q 003106 614 DAGGRGMDVSQGFS---FKEA--NSVRA-----STSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEH 679 (847)
Q Consensus 614 d~~v~vwd~~~~~~---~~~~--~~l~~-----h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h 679 (847)
...+++||++.-.. ..++ ..+.+ ...++.+++++.+-+.+|+|-.||.|..+.-+ .+.........
T Consensus 91 p~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 91 PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG 170 (933)
T ss_pred ceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC
Confidence 33899999886421 1222 12222 35678899999999999999999999998532 12222222234
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..+||.+.|.-++..++.+..-..|.+|.+......+.++..|...+.|..|++....++|++ +..|.+||......-
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPC 248 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCccee
Confidence 578999999999887444444577999999864434566788888999999998755455444 468999999876665
Q ss_pred EEEe-eCCceEEEE
Q 003106 760 RVFK-VESFCCWCV 772 (847)
Q Consensus 760 ~~~~-~~~~~v~~~ 772 (847)
..|. ++.....++
T Consensus 249 faf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 249 FAFEVGEKKEMLVF 262 (933)
T ss_pred eeecCCCeEEEEEE
Confidence 6666 554444433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0013 Score=74.70 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CCCeEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMS 728 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~~V~s 728 (847)
+..|+.++.+|.+..+|+.+++.+.+.... ....+.. .+..|+.++.||.|..+|..+ +..+-....- .....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccC
Confidence 456777788999999999999887655321 1112222 366888888999999999988 5444332211 111222
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.... +. .|+.++.||.|.++|..+|+.+..++.....+..--......|+.++.+|.++.++
T Consensus 331 p~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 331 PVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 2222 33 34578889999999999999888776543323321112344777888888877654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=82.24 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=64.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
+++++|+|..-.|+.|-.-|.+.||...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|..+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 55799999988899998999999999988777767778999999999999999999999999999998763
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0013 Score=78.99 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCC-C-ceeEE-Ec--cCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSS-----DGKLLATGGHDKKAVLWHTDT-L-KSKTN-LE--EHSS 681 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fsp-----dg~~Lasgs~Dg~V~vwd~~~-~-~~~~~-l~--~h~~ 681 (847)
....+.-.|++.| +.+..++.|... |.+++=.. +..-.+.|-.+..|..||.+- + +++.. .+ ....
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 4677889999988 566666666654 65554321 234566777788999999883 2 23321 11 2345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+|++-+.+| +||+|+.+|.||+||-.. ......+.+-..+|.+|+.+.||+++|+|| +..|.++|+.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 57888877777 899999999999999542 344445567789999999999999999888 5788888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0032 Score=65.68 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=106.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCC---CCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHS---SLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~---~~I~~v~ 687 (847)
..++.+..||..+| +.+..+.. ...+.... ..++..|++++.|+.|+.+|+.+++.+..+ .... .......
T Consensus 43 ~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 43 SGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp ETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SE
T ss_pred cCCCEEEEEECCCC---CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccC
Confidence 36888999999888 33333332 12211111 224566777778889999999999998884 3221 1122222
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC----------e-EEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS----------V-MSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~----------V-~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+...++.++.+..++.|..+|+++ +..+..+...... + ..+.+. ++ .++ .++.++.+..+|++++
T Consensus 118 ~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 118 PAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAVDLATG 193 (238)
T ss_dssp EEEETTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEEETTTT
T ss_pred ceEecCEEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEEECCCC
Confidence 333378899999899999999998 7776666544322 1 222223 33 454 5666775444499999
Q ss_pred ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 757 SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+.+-... ...+..........+|....++.+..+|...
T Consensus 194 ~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 194 EKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 8663222 2333332335566777777889999998653
|
... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0044 Score=63.28 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=93.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
..+++.|+..+.++-.|..+|+.+.+-. -...|.+-+.- -|++++.|+..|.+++.++.+ +.....|..-...-...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccce
Confidence 4578888999999999999988876532 22334433322 477899999999999999999 54444443222111122
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d 793 (847)
...+++. ++..++.|++.+..|.++..|+...+.......+-.. .....++.....|.+....
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence 3355655 7779999999999999999999988766554322222 2345566666666655444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=79.14 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=74.6
Q ss_pred EEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCC-
Q 003106 642 ICCHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP- 712 (847)
Q Consensus 642 ~~l~fspdg~~Lasg-----s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~- 712 (847)
+.|.|.-||.+||+. ...++|+|||-+ +..-.+-..-.+.=.+++|-|.|..+++.. .|+.|.+|.-+..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 468999999999983 333899999977 443332222233346899999999988753 4667988876431
Q ss_pred -CceEEEeccCCCCeEEEEEecCCCeEEEE---EeCCCcEEEEECCCCc
Q 003106 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICS---CDGDGEIRYWSINNGS 757 (847)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~g~~ll~s---~s~Dg~V~iWD~~~~~ 757 (847)
+.....+......|..|+|+.++. +|+. +.....|++|-+.+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 111112222334489999999977 5544 3334449999987653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0045 Score=72.60 Aligned_cols=191 Identities=11% Similarity=0.142 Sum_probs=122.1
Q ss_pred ceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 003106 600 NVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGKLLATGGHDK-----KAVLWHTDTL 670 (847)
Q Consensus 600 ~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~ 670 (847)
.+.+|.+..+ .+..+|.|.+.+ . .++.+..++++... |.-+....+..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--S--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--c--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 3445544433 234444444443 3 34566777777777 55555444447888888775 4899998732
Q ss_pred ------ceeE--EEcc-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCceEEEeccCCCCeEEEEEecC
Q 003106 671 ------KSKT--NLEE-----HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPN 734 (847)
Q Consensus 671 ------~~~~--~l~~-----h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~---~~~~~~~~~~~h~~~V~sl~fsp~ 734 (847)
.++. .+.. ...++.+|+.+.+-+.+|+|-.||.|.++.-+ ..+...........+|+.+.|..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1112 34678899999998899999999999998532 212222222334678999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCc-eEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 735 KDDLICSCDGDGEIRYWSINNGS-CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 735 g~~ll~s~s~Dg~V~iWD~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+..++..+. ...|.+|.+.... ...++..++..+.|..++....-+.++....+.+|+..
T Consensus 183 ~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred CceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 887432333 4589999998444 24557778888888888776663444455567777754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=69.39 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=122.3
Q ss_pred ceEEEecCCCeEe--ecCCCeEEeCCCCchhh---------ccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCC
Q 003106 557 PLMMFGTDGAGTL--TSPSNQLWDDKDLELRA---------DMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQG 625 (847)
Q Consensus 557 ~~v~~s~dG~~~~--~~~~~~iWD~~~~~~~~---------~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~ 625 (847)
+.+.|+-|..+++ .+.+..|+++ +..... .+..+.-+..-+....+++.+ ...+.++.+++|.+-.+
T Consensus 135 p~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tP-Ek~~kpa~~~i~sIp~~ 212 (561)
T COG5354 135 PVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTP-EKLNKPAMVRILSIPKN 212 (561)
T ss_pred ceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEcc-ccCCCCcEEEEEEccCC
Confidence 4788999988764 3455578885 222111 111121111112222222222 35677889999999876
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGG-----------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-----------~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
..+....-++. .=..+.|.+.|++|++-- ...++.|+++....+ .....-.++|.+++|.|.++.
T Consensus 213 s~l~tk~lfk~---~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 213 SVLVTKNLFKV---SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred CeeeeeeeEee---cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCc
Confidence 44333333332 224678888888766421 124678888874333 333366889999999999998
Q ss_pred EEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCc-eEEEEeeCCc
Q 003106 695 LATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGS-CTRVFKVESF 767 (847)
Q Consensus 695 Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~-~~~~~~~~~~ 767 (847)
|++++ .+-++.++|++. ..+.. .-...=..+.|+|.++++|+.|-. -|.|.|||..... ++..+.+...
T Consensus 289 F~vi~g~~pa~~s~~~lr~--Nl~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~ 362 (561)
T COG5354 289 FAVISGYMPASVSVFDLRG--NLRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT 362 (561)
T ss_pred eeEEecccccceeeccccc--ceEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc
Confidence 76655 688999999996 23333 234445668899998877754432 3789999998654 4445655443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=1.6e-05 Score=89.43 Aligned_cols=204 Identities=15% Similarity=0.108 Sum_probs=118.1
Q ss_pred CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcCC-CCEEEEEe----CCCcEEEEE
Q 003106 638 TSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS-MPRLATSS----FDKTVRVWD 708 (847)
Q Consensus 638 ~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp~-~~~Lasgs----~Dg~V~iWD 708 (847)
...+.|+++.- |..+++.|..+|.|.+-.++... ......+|....++++|++- .++||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34577777765 34578999999999998876322 23345578889999999985 45677664 366799999
Q ss_pred CCCC----CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEE
Q 003106 709 ADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDK 783 (847)
Q Consensus 709 ~~~~----~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~ 783 (847)
+.+. ........+....+.+++|..+.+ ++.+|.....|+++|+|... ...-......+..+..+. ....++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceec
Confidence 9873 111111122445567899996655 66699888999999998321 111111222222222222 2334455
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC-CeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD-SSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D-G~V~vW~~ 844 (847)
..+|.|.+||....-...+.. ........+.....+++.+.....+++...| ++|+.|++
T Consensus 214 ~~dg~iAiwD~~rnienpl~~-i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQI-ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cccCceeeccchhhhccHHHH-HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 569999999943221111111 1111111122233333334445566666544 57787765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00084 Score=76.97 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS- 715 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~- 715 (847)
...|.=-++...+++|+.|+.-|.|++|+-..++... +..+..+.+..+.++++..++|.|+..|.|.|+-+......
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344445566678999999999999999976554432 22234455666678888888899999999999988753221
Q ss_pred ---EEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 716 ---LRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 716 ---~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+..+ +.|...|++++|++++..++ +|+.-|+|.+-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 1111 34788999999999998765 999999999888776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0004 Score=78.64 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~-~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
...|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...|+ +++|.|||+.||.|-.||+|++.|+.+++...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4467789999999999999999999999988 788888887877777 99999999999999999999999999854443
Q ss_pred EEeccCCCCeEEEEEec
Q 003106 717 RTFMGHSASVMSLDFHP 733 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp 733 (847)
.........|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33334566788888874
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0044 Score=55.92 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=68.9
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 641 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 641 V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
|++|++.. || +.|++|+.|..||||+-+ ..+..+.. .+.|++++-... ..|+.+..+|+|-+|+-.. . +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e-e
Confidence 56666665 33 589999999999999854 56666654 456788877665 5799999999999998754 2 2
Q ss_pred EEeccCCCCeEEEEEe---cCCCeEEEEEeCCCcEEE
Q 003106 717 RTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fs---p~g~~ll~s~s~Dg~V~i 750 (847)
...+ .+..++++++. .+|..-|++|-.+|.|-+
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 22335655543 344455668878888753
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.011 Score=68.89 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=74.9
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-------------------------
Q 003106 646 FSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------------------------- 699 (847)
Q Consensus 646 fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------------------------- 699 (847)
+.+||+.|... -..+.|.+.|.++.+....+.--. ....++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 44567655333 234667788888777766654322 335667788888776665
Q ss_pred ---------------CCCcEEEEECCC----CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 700 ---------------FDKTVRVWDADN----PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 700 ---------------~Dg~V~iWD~~~----~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
.+++|.+.|.++ ....+..+ .-....+.|+++|||+++++++..+.+|.|+|+.+.+
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 234577888776 22233333 3445678899999999999999999999999998754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.064 Score=62.72 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=84.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCC--EEEEEEcC--CCCEEEEEe---------CCCcEEEEECCCCceeEEEcc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSK--VICCHFSS--DGKLLATGG---------HDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
..++.+..+|..++. .+..+...... -..+.-+| .+.+++.++ .++.|..+|..+++.+..+..
T Consensus 117 ~~~g~v~AlD~~TG~---~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 117 TFDGRLVALDAETGK---QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCeEEEEECCCCC---EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 457888889988873 33332221110 00111111 224555553 468899999999998887654
Q ss_pred CCC--------------------Ce-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCCceEEEe
Q 003106 679 HSS--------------------LI-TDVRFSPSMPRLATSSFDK------------------TVRVWDADNPGYSLRTF 719 (847)
Q Consensus 679 h~~--------------------~I-~~v~fsp~~~~Lasgs~Dg------------------~V~iWD~~~~~~~~~~~ 719 (847)
... .| ....+.+.+..++.++.|+ .|.-+|+++ ++.+-.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t-G~~~W~~ 272 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT-GKVKWFY 272 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-CCEEEEe
Confidence 211 01 1234455566787777665 799999998 5555544
Q ss_pred c-c-CCC----CeEEEEEe----cCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 720 M-G-HSA----SVMSLDFH----PNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 720 ~-~-h~~----~V~sl~fs----p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
. . |.. ......+. -++. .+++.++.+|.|...|.++|+.+-.+.
T Consensus 273 ~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 273 QTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred eCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 3 1 210 00111111 1222 356678889999999999999876654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.023 Score=69.26 Aligned_cols=178 Identities=14% Similarity=0.073 Sum_probs=103.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCce--------------
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT----DTLKS-------------- 672 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~----~~~~~-------------- 672 (847)
+...|.|.+.|.++. .+..+.. -.+.|.+++|+||+..|+..+.+++|.+-+- -..+.
T Consensus 86 ~~~~G~iilvd~et~-~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V 161 (1265)
T KOG1920|consen 86 ITALGDIILVDPETL-ELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV 161 (1265)
T ss_pred EecCCcEEEEccccc-ceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence 445677777777765 3344433 4578999999999999999998888877542 11111
Q ss_pred -----eEEEccC---------------------CCCeEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCCceEEEecc
Q 003106 673 -----KTNLEEH---------------------SSLITDVRFSPSMPRLATSS----FD-KTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 673 -----~~~l~~h---------------------~~~I~~v~fsp~~~~Lasgs----~D-g~V~iWD~~~~~~~~~~~~~ 721 (847)
...|.+. .+.=++|.|.-||.++|+.. .+ +.|+|||.+. ..-.+-..
T Consensus 162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg--~Lns~se~ 239 (1265)
T KOG1920|consen 162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG--ALNSTSEP 239 (1265)
T ss_pred cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc--hhhcccCc
Confidence 1112211 11124589999999998743 24 7899999872 21111122
Q ss_pred CCCCeEEEEEecCCCeEEEEE---eCCCcEEEEECCC---CceEEEEeeCCceEEEEEecCCCEEEEE---cC-CCcEEE
Q 003106 722 HSASVMSLDFHPNKDDLICSC---DGDGEIRYWSINN---GSCTRVFKVESFCCWCVNAMNRPCLWDK---LD-AGDIQI 791 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~~~---~~-~g~i~i 791 (847)
..+.-.+++|-|.|.. +++. +.|+.|.+|.-+. |+.+..+......|..+.+.....+.++ .. ...|.+
T Consensus 240 ~~~l~~~LsWkPsgs~-iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l 318 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSL-IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQL 318 (1265)
T ss_pred ccccccceeecCCCCe-EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEE
Confidence 2334457999998874 4333 2356788887542 2222223333333555655544443333 33 333888
Q ss_pred EcCC
Q 003106 792 SDSL 795 (847)
Q Consensus 792 ~d~~ 795 (847)
|...
T Consensus 319 wt~~ 322 (1265)
T KOG1920|consen 319 WTTG 322 (1265)
T ss_pred EEec
Confidence 8744
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0032 Score=70.12 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=95.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Cc-eeEEEccC--
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTDT-LK-SKTNLEEH-- 679 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-------~Lasgs~Dg~V~vwd~~~-~~-~~~~l~~h-- 679 (847)
+.....++-.|++.| +.+...+-|.+ |.-+.+.||.+ .-+.|-.|..|.-||.+- ++ .+....+|
T Consensus 352 ~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred CCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 444567788888887 55556665655 77888888654 223456788999999872 33 22222233
Q ss_pred --CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 680 --SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 680 --~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.....|++-..+| +||+||.+|.||+||-- +......+.+-..+|..|+.+.+|+++|+|| +.++.+.|+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 2335566655555 89999999999999983 2444556778889999999999999998777 5778887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=75.98 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=85.0
Q ss_pred EEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE
Q 003106 643 CCHFSSDGKLLATGGH----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~----Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~ 718 (847)
-+.|+|...+|++++. .|.|.||- ++|++-+.+. ..-.+++++|+|..-.|+.|-.-|.+.+|...+ .+....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 4578999999988874 57888884 5666544332 122367899999988889998899999999987 454555
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
...|...|..+.|+++|..++ ++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 567999999999999998655 99999999999765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.027 Score=64.12 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=94.4
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeC---C-CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCc-
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGH---D-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKT- 703 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~- 703 (847)
....+..-...+..-+|++++..++..+. . ..|.++|+++++....+. ..+.-..-+|+|||+.|+.+ ..||.
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCc
Confidence 33444455667888899999988766532 2 358999999876655443 23334567899999977554 55776
Q ss_pred -EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCceEEE-EeeCCceEEEEEecCCCE
Q 003106 704 -VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRV-FKVESFCCWCVNAMNRPC 779 (847)
Q Consensus 704 -V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 779 (847)
|.++|+.. +. +..+..-.+.-+.-.|+|||++++++.+..|.-.|| |++.+...+. +.........+..+.+..
T Consensus 263 ~iy~~dl~~-~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 263 DIYLMDLDG-KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cEEEEcCCC-Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEE
Confidence 55566665 22 444443334444678999999999888888875555 5555543322 222222233333444444
Q ss_pred EEEEcCCCc
Q 003106 780 LWDKLDAGD 788 (847)
Q Consensus 780 l~~~~~~g~ 788 (847)
++....+|.
T Consensus 341 ~~~~~~~g~ 349 (425)
T COG0823 341 VFESSSGGQ 349 (425)
T ss_pred EEEeccCCc
Confidence 445443444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=66.54 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc-------
Q 003106 648 SDGKLLATGGHDKKAVLWHTDT-----LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY------- 714 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~-----~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~------- 714 (847)
++|++... .+++|.|+|..+ .+.+..+. -......|+++|||+++++++ .+.+|.|.|+.+...
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 36666555 256799999887 34555554 344578999999999887665 599999999987332
Q ss_pred ----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 715 ----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 715 ----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.+..- .-......|.++|. .+.|...|..|..||+.+
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 2233322 23345688999876 566888899999999976
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00011 Score=83.04 Aligned_cols=140 Identities=18% Similarity=0.327 Sum_probs=95.5
Q ss_pred CCCcEEEEeccCCcee-eEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSF-KEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~-~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fs 689 (847)
.|..+.|||+.++.+. ++...+. +-.....+++|-.|.++|.+|...+.|.++|++ +...+..+ .+..|..+.++
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVd 204 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVD 204 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceec
Confidence 4677899999887331 1111222 244566688999999999999999999999987 22222222 23456667778
Q ss_pred C-CCCEEEEEeCCCcEEEEE-CCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC
Q 003106 690 P-SMPRLATSSFDKTVRVWD-ADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCDGD-GEIRYWSINN 755 (847)
Q Consensus 690 p-~~~~Lasgs~Dg~V~iWD-~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~ 755 (847)
| .++++++-. ||.|.+|| .++-+..+..+.... ..+..++|+|...-+++++..| ++|+.+|+..
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8 667777666 99999999 444233333332222 2489999999988788888876 7899999863
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00086 Score=46.61 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=33.8
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 666 (847)
+....+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.012 Score=67.29 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CceEEEe
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----------GYSLRTF 719 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----------~~~~~~~ 719 (847)
|.+|+..+.+ .|.+||+.+++.++.+... .|..|.|++++++++..+. .+|.|++.+.. ...+..+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEE
Confidence 8888877655 8999999999999998643 3899999999999988874 46777776531 0134444
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
......|.+.+|..+ .++.|.. . .|+. +..|+. .++..-...++-+... ....+|....++.+..+.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYE 260 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE
T ss_pred EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEE
Confidence 444678999999976 5555543 3 7777 444542 2232223333333332 346777777777777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00083 Score=46.68 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
++.+..+..|...|+++.|++++..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.082 Score=60.38 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-----------cE
Q 003106 641 VICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 704 (847)
Q Consensus 641 V~~l~fspdg~~Lasg-s~Dg----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-----------~V 704 (847)
+..++++|||++||.+ +..| .|+|+|+++++.+....... ....+.|.++++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998866 3333 59999999997765432111 123499999988776655333 38
Q ss_pred EEEECCCCCce-EEEeccCCCC--eEEEEEecCCCeEEEEEeCCC---cEEEEECCCC
Q 003106 705 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG 756 (847)
Q Consensus 705 ~iWD~~~~~~~-~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~ 756 (847)
++|++.+.... ...|.+.... ...+..+++++++++...... .|.+.|+..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 88998874332 3444443332 568889999998887665543 4788888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.036 Score=62.18 Aligned_cols=196 Identities=12% Similarity=0.155 Sum_probs=112.8
Q ss_pred cceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCC------CCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGS------LDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~------~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
-+.+.||.|+++++. ..+..|++.....+.+. ..+...|. -..++..++.+. +......+.+..+-+.
T Consensus 308 WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~-Kslki~gIr~FswsP~~~llAYwtpe-~~~~parvtL~evPs~-- 383 (698)
T KOG2314|consen 308 WPIFRWSHDDKYFARMTGNSISIYETPSFMLLDK-KSLKISGIRDFSWSPTSNLLAYWTPE-TNNIPARVTLMEVPSK-- 383 (698)
T ss_pred cceEEeccCCceeEEeccceEEEEecCceeeecc-cccCCccccCcccCCCcceEEEEccc-ccCCcceEEEEecCcc--
Confidence 357799999999865 44446777765443321 11111110 112333333321 2333444555555544
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
..+++..-|+-.=+-|.|-.+|++|+.--+ -..+-|+.++....-.....-...|...+|-|.|+.+++
T Consensus 384 -~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 384 -REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred -ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 233333333333345677788888886321 123556666644333222345677999999999998876
Q ss_pred EeC---CCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEE--eCCCcEEEEECCCCce
Q 003106 698 SSF---DKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSC--DGDGEIRYWSINNGSC 758 (847)
Q Consensus 698 gs~---Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~~~~~ 758 (847)
-+. ..+|.+|.+++... .+..+. ....+.|-|+|.|..+++.+ |..|.+.++|+....+
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 553 45799999884222 233332 34577899999999776544 4478999999985333
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.14 Score=52.63 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=62.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
-|++++.|+..|.+++.++++|.....+......-......+++..|++|+.|++.+..|.++ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 477899999999999999999987777654332222233567788999999999999999998 6677776654444444
Q ss_pred EEEec
Q 003106 729 LDFHP 733 (847)
Q Consensus 729 l~fsp 733 (847)
-+..+
T Consensus 141 P~i~~ 145 (354)
T KOG4649|consen 141 PVIAP 145 (354)
T ss_pred ceecC
Confidence 45555
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0077 Score=68.55 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=86.3
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.++|+.++. ...+..+.++. ..-+|+|||++|+.+. .||. |.++|+.++.. ..+..-.+.-+.=.|+||
T Consensus 218 ~~i~~~~l~~g~-~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGK-RPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCc-cceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCC
Confidence 568888998883 33344444443 4578999999877654 4664 56667776553 335433333346779999
Q ss_pred CCEEEEEe-CCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCceEEEE
Q 003106 692 MPRLATSS-FDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF 762 (847)
Q Consensus 692 ~~~Lasgs-~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~--V~iWD~~~~~~~~~~ 762 (847)
|+.|+-.+ ..|. |.++|.+. ..+..+......-..-.|+|+|+++++....+|. |.+.|+.++..+..+
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 99886655 4555 55556654 3333333232323378899999987766644455 666777666543333
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.057 Score=58.55 Aligned_cols=204 Identities=13% Similarity=0.087 Sum_probs=116.3
Q ss_pred CCcceEEEecCCCeEeecC-----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC-
Q 003106 554 TSKPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ- 624 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~- 624 (847)
.......++.||++++.-+ ++.+-|+...++..+++ ..++..++-..+. +.+.||.+-...+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-------~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-------TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-------GTSEEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-------CCCEEEEEecCCCceEEEecCCceEEEEECCC
Confidence 3566789999999988754 44788998887766543 2222333322222 455677777777764
Q ss_pred CceeeEe-EEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEccC----------CCCeEEEEEcC
Q 003106 625 GFSFKEA-NSVRASTSKVI-CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEH----------SSLITDVRFSP 690 (847)
Q Consensus 625 ~~~~~~~-~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~h----------~~~I~~v~fsp 690 (847)
|...... ..|..-.+++. .-++..++..++--+.+|.|+--|+...... ..+..- .+.---+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 3221111 12223333333 4455555666666789999999888754322 122110 11223477887
Q ss_pred CCCEEEEEe---CCC-------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCceE
Q 003106 691 SMPRLATSS---FDK-------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCT 759 (847)
Q Consensus 691 ~~~~Lasgs---~Dg-------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~ 759 (847)
..++|++-- .++ .|.+||+.+ ++.+..+.. ...+.+|..+.+.+-+|++. ..++.|.|||..+|+.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 766665532 122 488889988 666766652 23577999998877566554 45799999999999999
Q ss_pred EEEeeCC
Q 003106 760 RVFKVES 766 (847)
Q Consensus 760 ~~~~~~~ 766 (847)
++++.-.
T Consensus 326 ~~~~~lG 332 (342)
T PF06433_consen 326 RSIEQLG 332 (342)
T ss_dssp EEE---S
T ss_pred eehhccC
Confidence 8887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.72 Score=50.03 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=80.9
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
...+.+++.+..-..-.+....+....++..++ ++..|.|+.= .+.++.-.. ...-...|..+..+++|++++++..
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 334556665542222223334444444443333 3445554432 233443332 3345577899999999998888876
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEE----EeeCCceEEEEEec
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV----FKVESFCCWCVNAM 775 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~----~~~~~~~v~~~~~~ 775 (847)
...+.-||--....... -......|.+|.|.|++..++ . ...|.|++=|.. ..+.-.. +......+..+.+.
T Consensus 165 G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp SSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred ccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 66677888653122222 223567899999999976433 3 377888887722 1211111 11223346778888
Q ss_pred CCCEEEEEcCCCcEEEEc
Q 003106 776 NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d 793 (847)
+...+|.+...|.+.+..
T Consensus 242 ~~~~~wa~gg~G~l~~S~ 259 (302)
T PF14870_consen 242 PPNEIWAVGGSGTLLVST 259 (302)
T ss_dssp SSS-EEEEESTT-EEEES
T ss_pred CCCCEEEEeCCccEEEeC
Confidence 889999999999877654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.012 Score=70.60 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 727 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~ 727 (847)
-+..++.|+..|.|-..|+... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+.+ +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4567899999999999988742 22122223457899999999999999999999999999998 777888877766655
Q ss_pred EEEE---ecCCCeEEEEEeCCCcEEEEEC
Q 003106 728 SLDF---HPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 728 sl~f---sp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5544 34444 4557776665 5654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.086 Score=58.06 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=86.7
Q ss_pred CCCcEEEEeccCC----ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEc-cCCCCeEEE
Q 003106 613 RDAGGRGMDVSQG----FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE-EHSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~----~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~-~h~~~I~~v 686 (847)
+.|.+.++++... ..++.+... ...+.|++|+-- .++ |+.|. .++|++|++...+ .+..-. .....|+++
T Consensus 60 ~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl 135 (321)
T PF03178_consen 60 SSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL 135 (321)
T ss_dssp S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE
T ss_pred cCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEE
Confidence 3488889998873 244444443 347889999877 444 55444 4789999998766 433322 223356777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
... +++|+.|+....|.++..+.....+..+. .....+++++|-.+++ .++.++.+|.|.++...
T Consensus 136 ~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 136 SVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred ecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 665 56999999888888875554233333332 2345688999987765 66699999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.079 Score=57.65 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=100.1
Q ss_pred CcEEEEeccCCceeeEeEEee-cC-CCCEEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCceeEEEccCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-AS-TSKVICCHFSSDGKLLATGGH-----D----KKAVLWHTD-TLKSKTNLEEHSSL 682 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h-~~~V~~l~fspdg~~Lasgs~-----D----g~V~vwd~~-~~~~~~~l~~h~~~ 682 (847)
..+.+++.+++.....+.... +. ....+++.+.|+|.+.++... . ..-+||.++ .+..++.+..+-..
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 345566665442212222222 11 245678899999988776544 1 112455555 56666666666666
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C----Cce-EEEeccCCCCeEEEEEecCCCeEEEEEeCCC-cEEEEECC
Q 003106 683 ITDVRFSPSMPRLATSSF-DKTVRVWDADN-P----GYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSIN 754 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~-~----~~~-~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~ 754 (847)
-+.|+||||++.|+.+.. .+.|.-|++.. . +.. ...+....+..-.++...+|..++ ++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pd 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPD 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCC
Confidence 689999999998877765 57888887762 1 111 222223456666788888877443 333343 89999999
Q ss_pred CCceEEEEeeCCceEEEEEecC
Q 003106 755 NGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
|+.+..+......+.|++|-.
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred -CcEEEEEECCCCCCccceEeC
Confidence 999999888866666665543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.12 Score=56.25 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=78.9
Q ss_pred EEEEecc-CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C----ce-eEEEccCCCCeEEEE
Q 003106 617 GRGMDVS-QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDT--L----KS-KTNLEEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~-~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~--~----~~-~~~l~~h~~~I~~v~ 687 (847)
.++|.+. .+ ..+..+..|-..-+.|+||||++.|+.+.. .+.|..|+++. + +. ...+..+.+..-.++
T Consensus 143 G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 143 GSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred ceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE
Confidence 3566665 33 233334444455668999999998887755 37787777652 1 11 112222344555677
Q ss_pred EcCCCCEEEEEeCCC-cEEEEECCCCCceEEEeccCCCCeEEEEEe-cCCCeEEEEEeCC
Q 003106 688 FSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGD 745 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg-~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~s~s~D 745 (847)
...+|.+.+++..+| .|.+|+.+ ++.+..++-....+++++|- ++.+.|++++...
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 777887665555554 89999987 56777777666778888886 4456677666544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.11 Score=58.60 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=99.9
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--cc------CCCCeEEEEEcC-----CC-
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 692 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~------h~~~I~~v~fsp-----~~- 692 (847)
.|.+...+....+.|++|+.| |=.++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777777789999999997 6669999999999999999877776552 22 235688998863 22
Q ss_pred --CEEEEEeCCCcEEEEECCC--CC-ce---EEEeccCCCCeEEEE-EecCC--------------------CeEEEEEe
Q 003106 693 --PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLD-FHPNK--------------------DDLICSCD 743 (847)
Q Consensus 693 --~~Lasgs~Dg~V~iWD~~~--~~-~~---~~~~~~h~~~V~sl~-fsp~g--------------------~~ll~s~s 743 (847)
-.|++|...|.|.+|.+.- .+ .. ......+.+.|..|. |+.+. ..+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3678999999999998751 11 11 112224667777666 32221 12454555
Q ss_pred CCCcEEEEECCCCceEEEEeeCCceEEEEEe------cCCCEEEEEcCCCcEEEEcCCcc
Q 003106 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNA------MNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~------~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
+..|||+...+.+..+........+..+.+ .....+.+...+|.++++..-..
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 678999999988876655533233322222 25677888999999999985543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.22 Score=56.30 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=100.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..|.+.|..+. +....+. -......++|+++++.+..+.. +++|.+.|..+.+.+.+...-..+ ..++++|
T Consensus 95 ~~~v~vid~~~~---~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 95 SNTVSVIDTATN---TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred CCeEEEEcCccc---ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 567778885544 2222221 1126678999999988877765 688999999988888876544444 8999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCceEEE----eccCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCceEEE
Q 003106 691 SMPRLATSS-FDKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV 761 (847)
Q Consensus 691 ~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~s~s~D--g~V~iWD~~~~~~~~~ 761 (847)
++..++.+. .+++|.+.|... ....+. ...-......+.+.++|.++.++...+ +.|.+.|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999776665 789999999776 333320 112233456799999999877777665 6899999998876654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.69 Score=52.78 Aligned_cols=205 Identities=17% Similarity=0.135 Sum_probs=106.9
Q ss_pred ceEEEecCCCeEeec----CCC----eEEeCCCCchhhcc-cccccc-CC-CCCceEEeeecCCCCCC------CCcEEE
Q 003106 557 PLMMFGTDGAGTLTS----PSN----QLWDDKDLELRADM-DRLVED-GS-LDDNVESFLSHDDTDPR------DAGGRG 619 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~----~~~----~iWD~~~~~~~~~~-~~~~~~-g~-~d~~v~~~~s~d~t~~~------d~~v~v 619 (847)
....+||||++++.+ |++ +++|+++++...+. ...... .. .++.-.+++...+...+ ...|.+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 356889999987653 333 78999999776542 111111 11 11111222222222222 667788
Q ss_pred EeccCCceeeEeEEeecCCCC--EEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceeEEEccCCCCeE-EEEE
Q 003106 620 MDVSQGFSFKEANSVRASTSK--VICCHFSSDGKLLATGGHD----KKAVLWHTDTL----KSKTNLEEHSSLIT-DVRF 688 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~----~~~~~l~~h~~~I~-~v~f 688 (847)
|.+.+... .....+.+.... ...+.+++|+++|+..+.. ..|.+.|+..+ .....+......+. .+..
T Consensus 207 ~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877632 212333333332 6788999999997764432 34778888764 23334433444443 3444
Q ss_pred cCCCCEEEEEe---CCCcEEEEECCCCCc--eEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEE
Q 003106 689 SPSMPRLATSS---FDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRV 761 (847)
Q Consensus 689 sp~~~~Lasgs---~Dg~V~iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~ 761 (847)
. .+.+++... .++.|...++..... ....+..+...+.-..+...+.+|++..-.++ .|++||+..+.....
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 4 333444332 246677788887442 23355556664444444555667777766664 578889884444444
Q ss_pred Ee
Q 003106 762 FK 763 (847)
Q Consensus 762 ~~ 763 (847)
+.
T Consensus 365 ~~ 366 (414)
T PF02897_consen 365 IP 366 (414)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.52 Score=55.14 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=86.1
Q ss_pred EEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEccCCCCeE------EEEEc----CCCC--
Q 003106 644 CHFSSDGKLLATGGHDK------------------KAVLWHTDTLKSKTNLEEHSSLIT------DVRFS----PSMP-- 693 (847)
Q Consensus 644 l~fspdg~~Lasgs~Dg------------------~V~vwd~~~~~~~~~l~~h~~~I~------~v~fs----p~~~-- 693 (847)
.++.+.+.+++.++.|+ .|.-+|+++++.+..+..-...+. ...+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34444566777777665 799999999999887642111111 00111 1333
Q ss_pred -EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE-----------------EeCCCcEEEEECCC
Q 003106 694 -RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS-----------------CDGDGEIRYWSINN 755 (847)
Q Consensus 694 -~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s-----------------~s~Dg~V~iWD~~~ 755 (847)
.++.++.+|.|...|.++ ++.+-..... ...+..+| ..+++. ...+|.|...|+++
T Consensus 302 ~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 578888999999999999 5555443211 11133333 222221 12367899999999
Q ss_pred CceEEEEeeCC---------ceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 756 GSCTRVFKVES---------FCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 756 ~~~~~~~~~~~---------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
|+.+-...... .............++.+..+|.++.+|...
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 98776665431 111111112345677888889998888654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.4 Score=52.70 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=98.6
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEECCCC----ceeE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCH---FSSD----GKLLATGGH----------DKKAVLWHTDTL----KSKT 674 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~---fspd----g~~Lasgs~----------Dg~V~vwd~~~~----~~~~ 674 (847)
.|++.|..+.... ....+.. ...|+|++ |..+ ..+|+.|.. .|.|.++++... ..+.
T Consensus 3 ~i~l~d~~~~~~~-~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVL-DSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEE-EEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEE-EEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4677776654222 2222332 33344443 3332 467777753 288999999873 1222
Q ss_pred EE--ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l--~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+ ....++|++|+-. ++ +|+++. ++.|++|++......+. .+......|.++....+ +++.|+....|.++
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~---~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN---YILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT---EEEEEESSSSEEEE
T ss_pred EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc---EEEEEEcccCEEEE
Confidence 22 2457889998876 33 455444 58999999987441332 22223346777777644 56688877888877
Q ss_pred ECCC-CceEEEEee--CCceEEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 752 SINN-GSCTRVFKV--ESFCCWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 752 D~~~-~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
.++. ...+..+.. ....+.++.+. +...+..+...|.+.++..
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 5543 332333332 34456666555 4458888889999888763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.002 Score=75.08 Aligned_cols=94 Identities=16% Similarity=0.291 Sum_probs=78.3
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC-cE
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EI 748 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V 748 (847)
.+..++|..|....+|++|+-+.++|+.|+..|.|++|++.+ +.......+|.+.|+.|.-+.+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchH
Confidence 455667888999999999999999999999999999999998 7777888899999999999999998776665554 67
Q ss_pred EEEECCC-CceEEEEee
Q 003106 749 RYWSINN-GSCTRVFKV 764 (847)
Q Consensus 749 ~iWD~~~-~~~~~~~~~ 764 (847)
-+|++.+ +..++.|..
T Consensus 1170 aLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred HHhccccccCccccccc
Confidence 8999874 445555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.091 Score=60.16 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=75.7
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCC
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNPG 713 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW-D~~~~~ 713 (847)
....-....+.++|+|++++++ .||...||.....+.... +.-..++|... +.+|+-..+++|.|+ ++..
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~-- 99 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN-- 99 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE--
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcc--
Confidence 3344557899999999999995 478888888544444322 22356788884 457777778899996 3432
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.....+... ..+..|-. |. +|+..+ ++.|.+||+.+++.++.+.... |..+.+.+...+.+......+.+++
T Consensus 100 ~~~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA--VKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E---EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred ccceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC--CcEEEEECCCCEEEEEeCCeEEEEE
Confidence 222222211 12444433 55 443444 4589999999999999888653 5555555554444555555666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.054 Score=64.31 Aligned_cols=90 Identities=7% Similarity=0.089 Sum_probs=44.8
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeE--EEccCCCCeEEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKT--NLEEHSSLITDVRF 688 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~--~l~~h~~~I~~v~f 688 (847)
+..||..+. .|..+..+...... .+++. -++++++.||.+ ..|..||..+..-.. .+.........+.+
T Consensus 274 v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 274 ILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred EEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 345565554 44444333221111 12222 267788888754 347788877654221 11111111122222
Q ss_pred cCCCCEEEEEeCCC-----cEEEEECCC
Q 003106 689 SPSMPRLATSSFDK-----TVRVWDADN 711 (847)
Q Consensus 689 sp~~~~Lasgs~Dg-----~V~iWD~~~ 711 (847)
+++..+.||.++ +|.+||..+
T Consensus 351 --~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 351 --DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred --CCEEEEECCcCCCCCCceEEEEECCC
Confidence 466667777654 488899886
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.017 Score=66.68 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=84.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---e--EEE-ccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---K--TNL-EEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~--~~l-~~h~~~I~ 684 (847)
+...|.+.+++-..+... +....+-.+.+..+.++++..++|.|+..|.|.|+-+..... + ..+ +.|...|+
T Consensus 51 GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVT 128 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVT 128 (726)
T ss_pred ecccceEEEEecCchhhh--cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEE
Confidence 455667777776655221 122223455677778888989999999999999998764221 1 111 24778899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC---CceEEEeccCCCCeEEEEEecCCCeEEEEE
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~---~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
|++|++++..|++|..-|+|.+-.++.. ......+....+.|--|++.- .++|++.
T Consensus 129 al~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 129 ALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred EEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhh
Confidence 9999999999999999999998887761 111233333456676666653 3455443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.096 Score=54.64 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=101.6
Q ss_pred eeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC------C------------CcEEEE
Q 003106 604 FLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH------D------------KKAVLW 665 (847)
Q Consensus 604 ~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~------D------------g~V~vw 665 (847)
+...++.....|.|-|||... .+..+..+..|.-.-..+.|.+||+.|+.+.. | -.+.+.
T Consensus 129 YATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 129 YATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 445556777888999999984 46778888888888889999999999988753 1 124444
Q ss_pred ECCCCceeEEE--c--cCCCCeEEEEEcCCCCEEEEEeCCCc----EEEEECCCCCceEEEec-------cCCCCeEEEE
Q 003106 666 HTDTLKSKTNL--E--EHSSLITDVRFSPSMPRLATSSFDKT----VRVWDADNPGYSLRTFM-------GHSASVMSLD 730 (847)
Q Consensus 666 d~~~~~~~~~l--~--~h~~~I~~v~fsp~~~~Lasgs~Dg~----V~iWD~~~~~~~~~~~~-------~h~~~V~sl~ 730 (847)
|..++.++.+. . .+...|..++..+||+.++-|-..|- --+--...+++.+..+. .....|-+|+
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 54455544332 2 24456888888888876665543321 11111111133333221 1234677888
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 731 fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+.+...+.+|.-..+...+||..+|..+..-
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 88777766667767778899999999876544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.39 Score=54.24 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCce
Q 003106 640 KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYS 715 (847)
Q Consensus 640 ~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~---Dg~V~iWD~~~~~~~ 715 (847)
.-.+++++++++.++ +...+..|.+.|..+.+.+.....-. ....++|+++++.++.+.. +++|.+.|..+ ...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeE
Confidence 345778888888544 44456899999988777766654322 5678999999988877655 68899999887 444
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+.+...-..+ ..++++|+|..++++-..++.|.+.|.......+
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 4444333333 8899999999888777789999999987665553
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.33 Score=51.13 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--c--e--eEEEc-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--K--S--KTNLE-----EHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~--~--~~~l~-----~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.+..-.|++..++.++++--.++.+.++++... . . ...+. .+...+..|+|++.++.|+.+-...-.+|
T Consensus 64 ~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 64 FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp -SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 356788999888877777666899999988421 1 1 11121 24566899999999888888877766777
Q ss_pred EECCC--CCceEEE--e------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---------
Q 003106 707 WDADN--PGYSLRT--F------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF--------- 767 (847)
Q Consensus 707 WD~~~--~~~~~~~--~------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~--------- 767 (847)
|.++. ....+.. . ......+.++.|+|...++++-.+.+..|.++| ..|+.+..+.-...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 76653 1122211 1 123456889999999888888888899999999 66877766654331
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
..-.++++....+|..++-..+++|
T Consensus 223 QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CccEEEECCCCCEEEEcCCceEEEe
Confidence 2334555566666666665544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.6 Score=49.81 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=34.1
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
.|++|+.... .+..+.--.+.|.++.|+.+. .|++...||+|++||+.
T Consensus 62 ~I~iys~sG~----ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGK----LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCC----EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 5788877654 333333233899999999765 45556689999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.04 Score=66.51 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=91.6
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCceEEEec-
Q 003106 649 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (847)
Q Consensus 649 dg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~-I~~v~fsp-----~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~- 720 (847)
|.++|+.- .....|+-.|++.|+++..++.|... |.+++-.. +....+.|-.++.|..||.|-.+..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34444443 35678999999999999999988754 55543321 133467788899999999997543222111
Q ss_pred ---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 721 ---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 721 ---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.......|++-..+| .||.|+.+|.||+||--..+....|.+-+..|..+....+.....+.....+.+++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 234456777776665 46799999999999954333334455556777777665544444444444555555
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.24 Score=55.93 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=73.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------eeEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-------------------------------------------SKTNL 676 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-------------------------------------------~~~~l 676 (847)
.|+++.|+++..-|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999998643110 01112
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE-ecc------CCCCeEEEEEec---CCC----eEEEEE
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMG------HSASVMSLDFHP---NKD----DLICSC 742 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~------h~~~V~sl~fsp---~g~----~ll~s~ 742 (847)
....+.|++++.+ |-.++|.|..+|.+.|.|+|.+..+... +.. ....|+++.|.- .++ -++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346789999997 4449999999999999999874332221 122 245688898862 111 245577
Q ss_pred eCCCcEEEEECC
Q 003106 743 DGDGEIRYWSIN 754 (847)
Q Consensus 743 s~Dg~V~iWD~~ 754 (847)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 888999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.56 Score=51.08 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=92.5
Q ss_pred eEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCC----CCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeE
Q 003106 601 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRAST----SKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKT 674 (847)
Q Consensus 601 v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~----~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~ 674 (847)
...|++....+.+...|.+||..+-....++..-..|. .....++++.||++++.... --.|.|.|+..++.+.
T Consensus 53 a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 53 AETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 34456666667778889999998752222222211111 12335688899999888754 3579999999999988
Q ss_pred EEccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEe----ccCCCCe-EEEEEecCCCeEEEEEeCCCcE
Q 003106 675 NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF----MGHSASV-MSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~----~~h~~~V-~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
++..-. |.-.-|. ...|.+-|.||++....++..++...+. ..-...+ ..-.+...+.+++ ..+.+|.|
T Consensus 133 ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v 207 (342)
T PF06433_consen 133 EIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNV 207 (342)
T ss_dssp EEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEE
T ss_pred eecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE-EEecCCEE
Confidence 875332 2222233 2468889999999999998656554322 1122222 2334444444444 46788999
Q ss_pred EEEECCCCc
Q 003106 749 RYWSINNGS 757 (847)
Q Consensus 749 ~iWD~~~~~ 757 (847)
+-.|+....
T Consensus 208 ~~~dlsg~~ 216 (342)
T PF06433_consen 208 YSADLSGDS 216 (342)
T ss_dssp EEEEETTSS
T ss_pred EEEeccCCc
Confidence 998888664
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.11 Score=57.96 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=98.0
Q ss_pred cceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccC-CCCCceEEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 556 KPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDG-SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g-~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...+.|||||++++....+ +.+.+.. ..... ........-+...|.....-.+.++|+.++... .
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~ 172 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------YSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-E 172 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------ESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-E
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeec---------cCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-E
Confidence 4678999999998774332 2211100 00000 011111222222222223334567888777322 2
Q ss_pred eEEe---ecCCCCEEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCceeEEEcc-CCCCe---EEEEEc-CCCC-EEE
Q 003106 631 ANSV---RASTSKVICCHFSSDGKLLATG--GHDK---KAVLWHTDTLKSKTNLEE-HSSLI---TDVRFS-PSMP-RLA 696 (847)
Q Consensus 631 ~~~l---~~h~~~V~~l~fspdg~~Lasg--s~Dg---~V~vwd~~~~~~~~~l~~-h~~~I---~~v~fs-p~~~-~La 696 (847)
+... ..-...+..+.|.+|++.|+.. ..+. .|.++|+.++.+...++. ....| ..+.|. +++. +|.
T Consensus 173 ~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 173 LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 2222 3445678899999999844433 3332 466778877665444432 22333 355665 6665 445
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPNKDDLICSCDGDG----EIRYWSIN 754 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~g~~ll~s~s~Dg----~V~iWD~~ 754 (847)
....||.-+||-++..+...+.+....-.|.. +.|+++++.+++++..++ .|..-++.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55578876666555444555666655666754 778888888887887643 44444555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=61.81 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe------CCCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC-CcEEEE
Q 003106 637 STSKVICCHFSSDGKLLATGG------HDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVW 707 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs------~Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D-g~V~iW 707 (847)
....+.+.++++||+.++..- .|.. |.+++.. +.. ..+.. ....++-.|+|+|+.|++.+.. ..+++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999887765 2444 4444542 222 33322 2237889999999888777533 222332
Q ss_pred -----------ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 708 -----------DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 708 -----------D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+++. +.... .....|..+.|+|||.++++.. ++.|.|
T Consensus 425 ~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 3332 11111 2345799999999999887665 467776
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0021 Score=75.32 Aligned_cols=146 Identities=15% Similarity=0.187 Sum_probs=90.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEc-----cCCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLE-----EHSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~-----~h~~~I~~ 685 (847)
.+.+++-+..+. ......+++..+.|-+++|-. +...++ -.-|.+.|||++ .|+....+. .....+.-
T Consensus 110 ~~~vrvaN~~~s--m~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPS--MRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcch--hHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcce
Confidence 344555554432 112234567788898998865 333333 334778999987 454433322 22233444
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEE-----------ecCCCeEEEEEeCCCcEEEE
Q 003106 686 VRFSP---SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF-----------HPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 686 v~fsp---~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~f-----------sp~g~~ll~s~s~Dg~V~iW 751 (847)
|.|+| +.-+++.+..+++|++..+.+.. ...|.+|...+..++| +|||. +|++.+.||.|++|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFY 262 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCcccee
Confidence 55554 55677777889999988877522 2445567776665554 78887 56688889998888
Q ss_pred EC-----CCCceEEEEeeCC
Q 003106 752 SI-----NNGSCTRVFKVES 766 (847)
Q Consensus 752 D~-----~~~~~~~~~~~~~ 766 (847)
-+ +.-+|.+.++.|.
T Consensus 263 Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeccccHhhhhccCCCC
Confidence 55 3346777888776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.015 Score=66.29 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~-sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
..|.-+.|+|....||++..+|.|.+..+. ...+.++.-|...|+ +++|.|||+ +++.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 457789999999999999999999888776 345666665666666 999999987 7889999999999999998877
Q ss_pred EE
Q 003106 760 RV 761 (847)
Q Consensus 760 ~~ 761 (847)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 66
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.52 Score=52.23 Aligned_cols=194 Identities=19% Similarity=0.159 Sum_probs=90.3
Q ss_pred eEEEecCCCeEeecCCC------eEEeCCCCchhhccc-----cccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc
Q 003106 558 LMMFGTDGAGTLTSPSN------QLWDDKDLELRADMD-----RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~------~iWD~~~~~~~~~~~-----~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~ 626 (847)
-.+|.+||+.++..+.. .+.|+.+++...--+ .+....+-+.....++. ....++..|+.+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~------~~~~l~~vdL~T~- 112 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK------NGRSLRRVDLDTL- 112 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE------TTTEEEEEETTT--
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE------CCCeEEEEECCcC-
Confidence 34889999887774432 456777765432111 00000011111112222 1246677777765
Q ss_pred eeeEeEEeecCCCCEEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCceeEEEccCCCC
Q 003106 627 SFKEANSVRASTSKVICCHF--SSDGKLLATGGH----------------------DKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~f--spdg~~Lasgs~----------------------Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
++...+......+-...| +.|+++++..-. ...|...|+.+++....+ .....
T Consensus 113 --e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~w 189 (386)
T PF14583_consen 113 --EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDW 189 (386)
T ss_dssp ---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-
T ss_pred --cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCcc
Confidence 333333444555544455 346666554321 123555677777765444 35667
Q ss_pred eEEEEEcCCCCEEEEEe----CCCc-EEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEe----CCCcEEEE
Q 003106 683 ITDVRFSPSMPRLATSS----FDKT-VRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCD----GDGEIRYW 751 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs----~Dg~-V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s----~Dg~V~iW 751 (847)
+..+-|+|....+++=| .|.. -|||-+++.+.-++.+..+.. .+..=-|.+||..++.-.- .+..|.-+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 88999999866554433 3442 588988876666666655432 3445568999988765332 24467778
Q ss_pred ECCCCceEEE
Q 003106 752 SINNGSCTRV 761 (847)
Q Consensus 752 D~~~~~~~~~ 761 (847)
|+.+++....
T Consensus 270 d~~t~~~~~~ 279 (386)
T PF14583_consen 270 DPDTGERRRL 279 (386)
T ss_dssp -TTT--EEEE
T ss_pred CCCCCCceEE
Confidence 8888865443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0023 Score=74.93 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE-----------EcCCCCEEEEEeCCCcE
Q 003106 639 SKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTV 704 (847)
Q Consensus 639 ~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~-----------fsp~~~~Lasgs~Dg~V 704 (847)
..+.-|.|+| +.-++..+-.+++|+|.++++... ..|.+|..++++++ .+|||+.|++++.||.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3334444544 667888888899999877764322 34556776666554 58899999999999999
Q ss_pred EEEECCCC----CceEEEeccCCC-CeEEEEEecC-------CCe-EEEEE-eCCCcEEEEECCCCceE
Q 003106 705 RVWDADNP----GYSLRTFMGHSA-SVMSLDFHPN-------KDD-LICSC-DGDGEIRYWSINNGSCT 759 (847)
Q Consensus 705 ~iWD~~~~----~~~~~~~~~h~~-~V~sl~fsp~-------g~~-ll~s~-s~Dg~V~iWD~~~~~~~ 759 (847)
+.|-+.-. -.|+..++.|.. .-.|.-|+.. +.+ +++++ ..+..+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 98876432 234556666763 2222224322 122 22333 34578999998888887
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.23 Score=44.97 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=62.1
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 683 ITDVRFSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 683 I~~v~fsp---~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+++++.. +| +.|++||.|..||||+-+. .+..+.. .+.|++|+-...+ .|+.+-.+|+|.+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcc--e
Confidence 45555543 43 4899999999999998753 5666654 4568888776663 466888899999997532 2
Q ss_pred EEEEeeCCceEEEEEec-----CCCEEEEEcCCCcEE
Q 003106 759 TRVFKVESFCCWCVNAM-----NRPCLWDKLDAGDIQ 790 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~-----~~~~l~~~~~~g~i~ 790 (847)
+-..+.... +.++... ....+..+-.+|.|.
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222222 4444332 233566777777664
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.2 Score=56.07 Aligned_cols=189 Identities=15% Similarity=0.200 Sum_probs=109.9
Q ss_pred ceEEEecCCCeEeecCCCeEEeCCC---CchhhccccccccCCC--CCceEEeeecCC-----CCCCCCcEEEEeccCCc
Q 003106 557 PLMMFGTDGAGTLTSPSNQLWDDKD---LELRADMDRLVEDGSL--DDNVESFLSHDD-----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~~iWD~~~---~~~~~~~~~~~~~g~~--d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~ 626 (847)
..+.|-.+-.++.-++.+.++...+ .++...+..+...++- +..-.+....|. .++....+.-.|++.|
T Consensus 422 L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG- 500 (776)
T COG5167 422 LVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG- 500 (776)
T ss_pred EEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc-
Confidence 3455556666666666666665433 2344444444333222 211111111111 4556667777888877
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcC----CCCE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP----SMPR 694 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~-------~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp----~~~~ 694 (847)
+.+..+.-|... -+.|.|+.+ .-++|-.|..|.-.|.+ .+..+. .......++.-.|+. ...+
T Consensus 501 --kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGy 575 (776)
T COG5167 501 --KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGY 575 (776)
T ss_pred --eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-eeeehhccccccccccccccCce
Confidence 555555555554 467777432 22334445566555655 232222 222333344444443 3449
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
||.++..|.||+||.-. ......+.+-...|..|....+|+++|||| ..+|.+-|++
T Consensus 576 Ia~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 576 IAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred EEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 99999999999999754 333444566778899999999999999888 4688888875
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0096 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcCCCC
Q 003106 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (847)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (847)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5668999999999999999999999997654
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.99 Score=55.05 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=69.5
Q ss_pred CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D-----KTVRVWD 708 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-D-----g~V~iWD 708 (847)
.+..+.|+||+++|+.+.+. ..|+|.|+.+++.+........ ..++|.+|++.|+.+.. + ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988864433222222 46999999986655443 2 3688888
Q ss_pred CCCCC-ceEEEeccCCCCeE-EEEEecCCCeEEEEEeC--CCcEEEEEC
Q 003106 709 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSI 753 (847)
Q Consensus 709 ~~~~~-~~~~~~~~h~~~V~-sl~fsp~g~~ll~s~s~--Dg~V~iWD~ 753 (847)
+.++. .....+.+...... .+..+.+++.+++.+.. ++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88741 23334443333333 33334477776655443 467899985
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.062 Score=60.27 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE-------EEEEeCCCcEEEEECCCCCc-eEEEe
Q 003106 649 DGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-------LATSSFDKTVRVWDADNPGY-SLRTF 719 (847)
Q Consensus 649 dg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~-------Lasgs~Dg~V~iWD~~~~~~-~~~~~ 719 (847)
+.++| .++..-..|+-.|++.|+.+.+++-|.+ |+-+.|.|+.+. -+.|-.|..|.-||.|-.+. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44544 4455567788899999999999988776 888888887542 25566799999999986444 23332
Q ss_pred ccC----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 720 MGH----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 720 ~~h----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
.+| .....|.+-..+| .+|.|+.+|.||+||--.-.....|.+-...|.-+...
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence 333 2234444444443 67799999999999973222333444555555555443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.24 Score=56.69 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCCEEEEEEcC----CCCEEEEEeCCCcEEEEECC-----CCceeEEEccC---CCCe--EEEEEcCCCCEEEEEeCCCc
Q 003106 638 TSKVICCHFSS----DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEEH---SSLI--TDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 638 ~~~V~~l~fsp----dg~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~h---~~~I--~~v~fsp~~~~Lasgs~Dg~ 703 (847)
-..|..+.|.| |...|+..-..+.|.||-+. +.+.+..-..+ .-+| -.+.|+|....|+.-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 35688999998 34356666778899999875 22333222211 1112 35779999988877766665
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
-.+++++.....++.-....+.|.|.+|..||.+++++.+..=.-+|||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5667777644444433345678999999999999998887766788998643
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.62 Score=56.54 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCce---eEEE--------ccCCCCeEEEEEcCC---CCE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKS---KTNL--------EEHSSLITDVRFSPS---MPR 694 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---------~~~~---~~~l--------~~h~~~I~~v~fsp~---~~~ 694 (847)
.-.|..|.++++|++|+..|..|.+.+.=.+ .++. .+++ ..+...|..+.|+|. +.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468889999999999999886654442211 1111 1121 134467999999997 478
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
|+.-..|++||+||+.....+..++
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 9999999999999998755554444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.078 Score=64.30 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=83.8
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeE-----EEc------cCCCCeEEEEEcCCCC-EEEEEeCCCcEE
Q 003106 640 KVICCHFSSDGKLLATG--GHDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 705 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasg--s~Dg~V~vwd~~~~~~~~-----~l~------~h~~~I~~v~fsp~~~-~Lasgs~Dg~V~ 705 (847)
.|..+...+|++..++. +.+-.|.+||+++....+ -|. .....+.|+.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34455555676655443 344478899987532211 121 2234567889998744 457777899999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCC
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNR 777 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~ 777 (847)
|..+......+..+ .....+++|+|+|.|+-++ .|...|++.-|...- +..+.+.+. ...|.|+.+...
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecc
Confidence 98886533333443 2456789999999998655 888889998887653 333333321 345666665543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.2 Score=45.55 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=80.8
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--------------ccCCCC
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--------------EEHSSL 682 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--------------~~h~~~ 682 (847)
+.++++......+.+.. ...|..|...++-+.|++-+ |+.|++++++........ ......
T Consensus 18 l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (275)
T PF00780_consen 18 LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKG 92 (275)
T ss_pred EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCC
Confidence 66677632222222222 22399999999877777665 599999998854443311 112233
Q ss_pred eEEEE--EcCCCCEEEEEeCCCcEEEEECCCC---C-ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 683 ITDVR--FSPSMPRLATSSFDKTVRVWDADNP---G-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 683 I~~v~--fsp~~~~Lasgs~Dg~V~iWD~~~~---~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+..++ -...+...+++...++|.||..... . ..++++. -...+.+++|..+ .++.|. .+...+.|+.++
T Consensus 93 v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~ 167 (275)
T PF00780_consen 93 VSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG 167 (275)
T ss_pred eeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence 44443 1123334444444668998887652 2 3445554 4477999999944 444554 446889999987
Q ss_pred ceEEEEe
Q 003106 757 SCTRVFK 763 (847)
Q Consensus 757 ~~~~~~~ 763 (847)
.....+.
T Consensus 168 ~~~~l~~ 174 (275)
T PF00780_consen 168 SPSELLD 174 (275)
T ss_pred CceEEeC
Confidence 7655553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.031 Score=56.61 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=57.2
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEE-EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVR-FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~-fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~ 725 (847)
-+..|++|+.||.|++|...- +.....+..-...|.++. --.++.+.++++.||.||.|++.- .+.+.....|. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC
Confidence 356799999999999998762 222111212222333332 222445778899999999999986 55454444455 23
Q ss_pred eEEEEEecCCCeEEEEE--eCCCcEEEEECC
Q 003106 726 VMSLDFHPNKDDLICSC--DGDGEIRYWSIN 754 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~ 754 (847)
+..+.....++ +++.+ |.|..++.|++.
T Consensus 148 ~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 33333332222 22233 444455555544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.79 Score=49.74 Aligned_cols=169 Identities=13% Similarity=0.143 Sum_probs=87.7
Q ss_pred EEEeccC-CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEE
Q 003106 618 RGMDVSQ-GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 618 ~vwd~~~-~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~La 696 (847)
.+|.... +.+++.+. ..-.+.|.++..++||++|+++..-..+.-||-....-...-+.-...|.++.|.|++...+
T Consensus 125 ~iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~ 202 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM 202 (302)
T ss_dssp -EEEESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE
T ss_pred cEEEeCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE
Confidence 3444443 34555443 34557899999999999999886655556787553222222223567899999999976555
Q ss_pred EEeCCCcEEEEECCCCCceEEE----eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceE
Q 003106 697 TSSFDKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCC 769 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v 769 (847)
....|.|++=|.......... +....-.+..|+|.++++ ++++|+ .|+| +.....|+.-...+. -...+
T Consensus 203 -~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 203 -LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNL 278 (302)
T ss_dssp -EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS--
T ss_pred -EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCce
Confidence 448888988873221111111 111223478999998865 665554 5544 455556654444432 13346
Q ss_pred EEEEecCCCEEEEEcCCCcEEEE
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
+.+.|.+...-|....+|.+.-|
T Consensus 279 ~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEEcCCCceEEECCCcEEEEe
Confidence 66667777788888888877654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.64 Score=55.36 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred CEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE-
Q 003106 640 KVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV- 706 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~D------------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i- 706 (847)
..++-.|+|||+.|++.+.. +.|.+.+++.++... .....|..++|+|||.+|+... ++.|+|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 37788999998888877533 223333443333322 2345799999999999987766 577776
Q ss_pred --EECCCCCc-eE---EEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 707 --WDADNPGY-SL---RTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 707 --WD~~~~~~-~~---~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
-.... +. .+ ..+ .+-...+.+++|..++. |+ .+..++...+|.+.
T Consensus 474 ~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCC-CceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence 33222 32 11 112 22334468899999977 44 33434444455544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.36 Score=49.15 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=85.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 707 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iW 707 (847)
+.+.++-..+|+|++++-.-.| |.++.|-.. -.+..+...-.--+.++|+.+.+.+ ++-+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 5667788889999985433222 344555433 1112222233334678898887766 555678889889
Q ss_pred ECC--CC----CceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC
Q 003106 708 DAD--NP----GYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 708 D~~--~~----~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
|.+ ++ ...+..++. ..-..-.++...+|. |++++-..++|...|..+|+.+.+++.....+.|++|...
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 843 31 122222322 011122344455555 6667777899999999999999999999888888887655
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.59 E-value=4.7 Score=47.62 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=47.0
Q ss_pred EEEcCCCCEEEEEeC-----CC-----------cEEEEECCCCceeEEEccCCCCeE---------EEEEcCCCC---EE
Q 003106 644 CHFSSDGKLLATGGH-----DK-----------KAVLWHTDTLKSKTNLEEHSSLIT---------DVRFSPSMP---RL 695 (847)
Q Consensus 644 l~fspdg~~Lasgs~-----Dg-----------~V~vwd~~~~~~~~~l~~h~~~I~---------~v~fsp~~~---~L 695 (847)
+.+.+...+|+.+.. ++ .|.-.|+++|+.+..+......+. -+++..+|+ .+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 456665666666541 22 577789999999887764222222 223334665 67
Q ss_pred EEEeCCCcEEEEECCCCCceE
Q 003106 696 ATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~ 716 (847)
+.+..+|.+.+.|.++ ++.+
T Consensus 319 ~~~~K~G~~~vlDr~t-G~~i 338 (527)
T TIGR03075 319 AHADRNGFFYVLDRTN-GKLL 338 (527)
T ss_pred EEeCCCceEEEEECCC-Ccee
Confidence 7899999999999998 4543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.9 Score=43.13 Aligned_cols=122 Identities=11% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 632 NSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
..+.+-...|..|+|.|+.+ ++++....+.|..++.+ ++.++++.-. .+....|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34455566799999999765 55556667788888864 7888877533 356889999887766666656999999998
Q ss_pred CCCCce-----EEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 710 DNPGYS-----LRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 710 ~~~~~~-----~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...... +..+ ..+...+-.|+|++.+.+++++.- ..-.+||.++.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNG 148 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEES
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEcc
Confidence 442211 1112 124456899999999888886654 44566666653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.35 Score=50.60 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=90.2
Q ss_pred EEEEEEcCC-CCEEEEEeCCCc-EEEEECCCCceeEEEccCCCC--eEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 003106 641 VICCHFSSD-GKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLATSSFD-----KTVRVWDADN 711 (847)
Q Consensus 641 V~~l~fspd-g~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~--I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~ 711 (847)
...|+|+|. .+-++.+-.-|+ ..|+|........++...++. --.-.||+||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 335778884 345666655565 478888876655554322221 1123599999999876543 6799999998
Q ss_pred CCceEEEeccCCCCeEEEEEecCCCeEEEEEeC------CC-----------cEEEEECCCCceEEEEee----CCceEE
Q 003106 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG------DG-----------EIRYWSINNGSCTRVFKV----ESFCCW 770 (847)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~------Dg-----------~V~iWD~~~~~~~~~~~~----~~~~v~ 770 (847)
....+.++..|.-....|.|.+||+.+++..+. -| .+.+.|..+|..+....- +...+.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 667788888898888999999999976655430 01 233444445544332221 223455
Q ss_pred EEEecCCCEEEEEc
Q 003106 771 CVNAMNRPCLWDKL 784 (847)
Q Consensus 771 ~~~~~~~~~l~~~~ 784 (847)
-++...+..+|.++
T Consensus 230 Hld~g~dgtvwfgc 243 (366)
T COG3490 230 HLDIGRDGTVWFGC 243 (366)
T ss_pred eeeeCCCCcEEEEE
Confidence 55566666666654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.5 Score=44.06 Aligned_cols=198 Identities=13% Similarity=0.092 Sum_probs=109.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-ceeEEEcc-----CCCCeEEEEEcCCCC------------EEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTD------TL-KSKTNLEE-----HSSLITDVRFSPSMP------------RLA 696 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~------~~-~~~~~l~~-----h~~~I~~v~fsp~~~------------~La 696 (847)
-+.|+|+|.+.+-++....++..+||.. .. .++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578999988888888888999999986 11 23334432 234578888875322 367
Q ss_pred EEeCCCcEEEEECCCCCc----eEEEec-cCCCCeE-EEEEecC--CCeEEEEEeCCCcEEEEECCCCceE--EEEeeC-
Q 003106 697 TSSFDKTVRVWDADNPGY----SLRTFM-GHSASVM-SLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKVE- 765 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~----~~~~~~-~h~~~V~-sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~--~~~~~~- 765 (847)
.+++||+|.-|.-.-... ....+. ...+.|+ .+++... +..|.++--..++|.|||-.-.+.. ..|...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532111 122222 2224443 5665533 5566666667899999986532211 011110
Q ss_pred -------------CceEE-EEE--ecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-----cc
Q 003106 766 -------------SFCCW-CVN--AMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-----RS 824 (847)
Q Consensus 766 -------------~~~v~-~~~--~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~ 824 (847)
...++ ..+ ......-..+...|.|.+|+..- .++.++. +....-..|-+.. ..
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l~~r~a---s~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QLLRRVA---SSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cEEEEec---cCCcccCCceeeeChhhhCC
Confidence 00000 000 00111222344456677777442 2222221 2222334455543 44
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 003106 825 CRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+|+---+||+|.+||.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred CCCCeEEeecCCceeEEecC
Confidence 45677888889999999995
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.39 E-value=4.4 Score=42.80 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceE
Q 003106 641 VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL 716 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~ 716 (847)
.-.+.|..+|.++-+.+.-| .|+.+|+++++......-. ...-..|.+. ++.|+--. .++.+.+||..+ ...+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEE
Confidence 33778877888888888766 7999999999887665422 2223344444 34555444 588999999998 6677
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.++. ..+.-+.|+ .++..+++|-+ ...|+++|.++.+.++.+..
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence 7774 335567777 45666775544 66899999998877776654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.97 Score=53.80 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=73.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C-----cEEEEECCCCceeE--EEccCCCCeEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K-----KAVLWHTDTLKSKT--NLEEHSSLITDV 686 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g-----~V~vwd~~~~~~~~--~l~~h~~~I~~v 686 (847)
..+..+|..++ .+.....+..... -.++++. ++.+.++||.| | +|..||..+.+-.. .+.......-.+
T Consensus 301 ~~ve~yd~~~~-~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTN-EWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcC-cEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 34556666665 4555554442222 3344444 56788999988 3 56778877655322 121111111111
Q ss_pred EEcCCCCEEEEEeCCCc-----EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC------cEEEEECCC
Q 003106 687 RFSPSMPRLATSSFDKT-----VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG------EIRYWSINN 755 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~-----V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg------~V~iWD~~~ 755 (847)
.+ +|...|+|+.||. |-.||.++..... .........+.....-+..+.+.|+.|+ +|..||..+
T Consensus 378 ~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 378 VL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred EE--CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 11 4667788888874 7788887633221 1111112222332232345777777553 577888887
Q ss_pred CceE
Q 003106 756 GSCT 759 (847)
Q Consensus 756 ~~~~ 759 (847)
+...
T Consensus 454 ~~W~ 457 (571)
T KOG4441|consen 454 NTWT 457 (571)
T ss_pred Ccee
Confidence 6543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.5 Score=44.86 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
+.+-+..|.++.|+|+.+.|++......-.||=...|..++++.-. -.....|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999999888888888877789999887521 123456777777777777777888888877653
Q ss_pred CceE---------EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 713 GYSL---------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 713 ~~~~---------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...+ ............++|+|....++++-- -.-++||.+..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~ 211 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQ 211 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEec
Confidence 2211 111112456788999999888875544 45677776653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=5.6 Score=44.07 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=91.9
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceeEEE-ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL-WHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~v-wd~~~~~~~~~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.++..+.. .-...+.++.+.+++.+++++ ..|.+.. +| +.++....+ ..-...++++.+.++++.++++ ..|
T Consensus 161 G~tW~~~~~--~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G 235 (334)
T PRK13684 161 GKNWEALVE--DAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGG 235 (334)
T ss_pred CCCceeCcC--CCcceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCC
Confidence 345554433 225678999999988777665 4565543 22 222222222 2334678999999998766655 467
Q ss_pred cEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceEEEEEec
Q 003106 703 TVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCCWCVNAM 775 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v~~~~~~ 775 (847)
.+++=+.+. +........ -...++++.|.+++. ++ .++.+|.|. .....++.-..... -....+.+.+.
T Consensus 236 ~~~~~s~d~-G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 236 QIRFNDPDD-LESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred EEEEccCCC-CCccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 665322332 332222111 123478899998765 55 444567554 44444443333321 12245556666
Q ss_pred CCCEEEEEcCCCcEEEEcC
Q 003106 776 NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~ 794 (847)
+....|.....|.|..++.
T Consensus 312 ~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCceEEECCCceEEEecC
Confidence 6777888888888887764
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.71 Score=54.63 Aligned_cols=124 Identities=13% Similarity=0.175 Sum_probs=77.6
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEc--CCCCEEEEEeCCCcE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKTV 704 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fs--p~~~~Lasgs~Dg~V 704 (847)
+....++...-..+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.+++|. |++..+++.|....|
T Consensus 19 w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred EEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 33444444444455555555545444444444579999999776543322 446789999995 578889999999999
Q ss_pred EEEECC-----CCC---ceEEEe--ccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 705 RVWDAD-----NPG---YSLRTF--MGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 705 ~iWD~~-----~~~---~~~~~~--~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.+|.-. +.. ..++.+ ..|+ ..|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 998542 111 122222 2333 5788999999986 44333 3578888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.1 Score=44.31 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE--------
Q 003106 648 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 718 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~-------- 718 (847)
..++.|+.|+.+| |.++++. ..+..... +...|..|...++-+.|++-+ |+.|+++|+.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3678999999998 9999983 33333333 233399999999888777766 599999998762221100
Q ss_pred -----eccCCCCeEEEE--EecCCCeEEEEEeCCCcEEEEECCCC-----ceEEEEeeCCceEEEEEec
Q 003106 719 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 719 -----~~~h~~~V~sl~--fsp~g~~ll~s~s~Dg~V~iWD~~~~-----~~~~~~~~~~~~v~~~~~~ 775 (847)
.......|...+ -...+...|+.+ ...+|.||..... +..+.+... ..+.++.+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~ 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe
Confidence 111222344333 112334444333 3568998887653 344555544 334445544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.041 Score=55.74 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeec-CCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRA-STSKVIC-CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~-l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v 686 (847)
.+..++.|.+|...-. .....+.. -...|.| |.-..++.+.++++.||.||.|++...+.+.....|. ..+..+
T Consensus 75 vG~~dg~v~~~n~n~~---g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLE---GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eecccceEEEecCCcc---chHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 5667888888776521 11111111 1122222 2223366689999999999999999888887777777 556666
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEECCC
Q 003106 687 RFSPSMPRLATS--SFDKTVRVWDADN 711 (847)
Q Consensus 687 ~fsp~~~~Lasg--s~Dg~V~iWD~~~ 711 (847)
..+..++.|+++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666666777776 7777788887764
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.9 Score=45.58 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCCCCceEE
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLR 717 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs----p~~~~--Lasgs-~D---g~V~iWD~~~~~~~~~ 717 (847)
|...+|+....++-+.+||++ |+.+..+. .+.++.|+.. -.++. |+.++ .+ .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 355678888888899999998 56656664 2334444332 13432 44444 32 4699998863223344
Q ss_pred Eecc-------CCCCeEEEEEe--c-CCCeEEEEEeCCCcEEEEECC---CC----ceEEEEeeCCceEEEEEecCCCEE
Q 003106 718 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 718 ~~~~-------h~~~V~sl~fs--p-~g~~ll~s~s~Dg~V~iWD~~---~~----~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.+.. ....++.+|+- + +|..+++....+|.+.-|.+. .+ +.++.|...+..--|+.-+....+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778873 3 456666677889999888774 33 467888887776677777778899
Q ss_pred EEEcCCCcEEEEcCCccc---ceee-ecccccCCCCcc-ccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 781 WDKLDAGDIQISDSLFIN---ANIF-CGLGWYGSDEIP-APSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~---~~~~-~~~~~~~~~~~~-~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|.+.++.-|..|+..... ...+ ...+.....++. ..+|.- ....+-+|+|.-++++..||+.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--SDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---CCC-EEEEEEEGGGTEEEEEES
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--CCCCeEEEEEcCCCCeEEEEec
Confidence 999898888777744221 1112 111111111221 112221 1112335666668889999985
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.72 E-value=8.9 Score=42.75 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred cEEEEECCCCceeE-EE----ccCCCCeEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCCceEEEeccCCCCe---E
Q 003106 661 KAVLWHTDTLKSKT-NL----EEHSSLITDVRFSPSMPRLATS--SFDK---TVRVWDADNPGYSLRTFMGHSASV---M 727 (847)
Q Consensus 661 ~V~vwd~~~~~~~~-~l----~~h~~~I~~v~fsp~~~~Lasg--s~Dg---~V~iWD~~~~~~~~~~~~~h~~~V---~ 727 (847)
.|.|+|+.+++... .+ ..-...+..+.|.++++.|+.. ..+. .|.++|+.+....+.........| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 46678888776532 11 1234568999999999844433 3332 367778876322222222222222 3
Q ss_pred EEEEe-cCCCeEEEEEeCCCcEEEE--ECCCCceEEEEeeCCceEE
Q 003106 728 SLDFH-PNKDDLICSCDGDGEIRYW--SINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 728 sl~fs-p~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~~~~~~~~v~ 770 (847)
.+.|. +++..+|.....||.-+|| |...+. .+.+....-.|.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~ 283 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVT 283 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeec
Confidence 56665 7777777777788865555 555454 345554444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.095 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS 672 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~ 672 (847)
...|.+++|+|...+||.|..||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.1 Score=50.47 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccC--C--CCeEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCCceEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~--~~I~~-v~fsp~~~~Lasgs------~Dg~V~iWD~~~~~~~~~~ 718 (847)
+..|+.++.|+.|..+|.++++.+..+... . ..+++ -.+. ++ .|+.+. .+|.|+.+|+++ ++.+-.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCC-CceeEe
Confidence 356777888999999999999998776421 1 11221 1111 33 455543 268999999998 555443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.93 Score=55.56 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
.-+.|+.|.|.- ...+.+..|+.|+|..+.-. ..+..+ .-...++||+|+|.|+.|+.|-..|++.-|...- .+.
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--eik 232 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--EIK 232 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc--cee
Confidence 446688898843 34667778999999877632 222232 2445689999999999999999999999887653 222
Q ss_pred EEecc----CCCCeEEEEEecCCCeEEEEE
Q 003106 717 RTFMG----HSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 717 ~~~~~----h~~~V~sl~fsp~g~~ll~s~ 742 (847)
..+.+ ....|.+|+|-....++++-+
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 32221 146799999998766555433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=5.4 Score=48.70 Aligned_cols=175 Identities=10% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCC--ceeEEEccCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTL--KSKTNLEEHSS 681 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~--~~~~~l~~h~~ 681 (847)
.+.....+++.|+.++..+ ...+.+ .-..++|++|++.|+.+..| ..|+++++.++ +-...+.....
T Consensus 148 ~G~E~~~l~v~d~~tg~~l--~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~ 222 (686)
T PRK10115 148 LSRRQYGIRFRNLETGNWY--PELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD 222 (686)
T ss_pred CCcEEEEEEEEECCCCCCC--CccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC
Confidence 3444455667777665211 111111 11458999999877665442 36788888877 44444543333
Q ss_pred CeE-EEEEcCCCCEEEEEe---CCCcEEEEECCCC-CceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-C--cEEEEEC
Q 003106 682 LIT-DVRFSPSMPRLATSS---FDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSI 753 (847)
Q Consensus 682 ~I~-~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~-~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g--~V~iWD~ 753 (847)
... .+..+.++++++..+ .++.+.+|+.... +.....+..-......+. +.. ..+++....+ . .|...++
T Consensus 223 ~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~ 300 (686)
T PRK10115 223 TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRV 300 (686)
T ss_pred CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecC
Confidence 333 344455787765443 3567999996432 222222222222223332 333 3344333322 2 3444455
Q ss_pred C-CCceEEEEeeC-CceEEEEEecCCCEEEEEcCCCcEEE
Q 003106 754 N-NGSCTRVFKVE-SFCCWCVNAMNRPCLWDKLDAGDIQI 791 (847)
Q Consensus 754 ~-~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i 791 (847)
. .++....+... ...+..+....+..++....++.-.+
T Consensus 301 ~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l 340 (686)
T PRK10115 301 RDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSL 340 (686)
T ss_pred CCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEE
Confidence 4 22222223331 23455555555555556655655333
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.25 E-value=7.2 Score=44.54 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=60.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-CC
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SA 724 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-~~ 724 (847)
++.+....+....++.|.+.+....+. +. ..+.|..|++||++++||.-..+|.+.|.+.+- ...+..+... ..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKS 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecCcCC
Confidence 344444555555555555444332211 21 235799999999999999999999999998765 4455555433 45
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
....+.|+-+.. +++.- +..|.++..
T Consensus 261 ~p~~~~WCG~da-v~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 261 PPKQMAWCGNDA-VVLSW--EDELLLVGP 286 (410)
T ss_pred CCcEEEEECCCc-EEEEe--CCEEEEECC
Confidence 667777876533 22222 345555553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=62.04 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
+..++.|++.|.|...|.+..-..+..-....++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..+......
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456888888999999988763221222233567899999999987 5558888999999999999988888766543332
Q ss_pred E----EecCCCEEEEEcCCCc
Q 003106 772 V----NAMNRPCLWDKLDAGD 788 (847)
Q Consensus 772 ~----~~~~~~~l~~~~~~g~ 788 (847)
+ .......++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 2 2223334555555553
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.17 E-value=4.9 Score=49.35 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCC--------eEEEEEcC----------------CCCEEEEEeCCCcEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 705 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~--------I~~v~fsp----------------~~~~Lasgs~Dg~V~ 705 (847)
+..|+.|+.++.|.-.|.++++.+..+...... ...+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788889999999999888777532211 11233321 345788899999999
Q ss_pred EEECCCCCceEEEeccCCCCeE-------------EEEEec--CCCeEEEEEeC----------CCcEEEEECCCCceEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 760 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~-------------sl~fsp--~g~~ll~s~s~----------Dg~V~iWD~~~~~~~~ 760 (847)
-.|.++ ++.+..|. ..+.|. .+.-.| .+..++ .++. +|.|+-+|+++|+.+-
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998 56555542 211110 011111 123344 4432 5889999999999887
Q ss_pred EEee
Q 003106 761 VFKV 764 (847)
Q Consensus 761 ~~~~ 764 (847)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.87 Score=51.00 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCC--CCE-EEEEeCCCcEEEEEC-CCCc----eeEEEccC---
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD--GKL-LATGGHDKKAVLWHT-DTLK----SKTNLEEH--- 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspd--g~~-Lasgs~Dg~V~vwd~-~~~~----~~~~l~~h--- 679 (847)
....+.+||+.+. +.+.++. .....+..|+|..+ ..+ |+.+.-..+|..|-- +.++ .+..+...
T Consensus 220 yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 220 YGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 3567899999987 3444443 22234667888764 333 333334455555433 3332 12222110
Q ss_pred --------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEe---ccC---------------CCCe
Q 003106 680 --------------SSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTF---MGH---------------SASV 726 (847)
Q Consensus 680 --------------~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~---~~h---------------~~~V 726 (847)
..-|++|.+|.|.++|+.++ .+|.||.||+..+.....+- .|- .+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 24589999999999997776 59999999998865543322 110 1223
Q ss_pred EEEEEecCCCeEEEEEe
Q 003106 727 MSLDFHPNKDDLICSCD 743 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s 743 (847)
.-|..+-||+++.+|.|
T Consensus 377 qMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTSSEEEEE--
T ss_pred CeEEEccCCeEEEEEee
Confidence 55777888888887765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.56 Score=53.00 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=66.2
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecC-----------------CC
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPN-----------------KD 736 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~-----------------g~ 736 (847)
.|......+.+|..+|++++.|+...=|.|.|+|+.+ +..++.++|-.+.=.. +..... .-
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3445556689999999998888887889999999998 7888888876554211 111111 11
Q ss_pred eEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 737 DLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 737 ~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
.|++-.-.-|.|.||+++.|..+..+.....
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 2445566789999999999999988876544
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=9.2 Score=47.42 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=85.2
Q ss_pred CCCCEEEEEEc---C----CCCEEEEEeCCCcEEEEECC------C---------CceeEEEcc---CCCCeEEEEEcCC
Q 003106 637 STSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSPS 691 (847)
Q Consensus 637 h~~~V~~l~fs---p----dg~~Lasgs~Dg~V~vwd~~------~---------~~~~~~l~~---h~~~I~~v~fsp~ 691 (847)
-..+|..|+|. . ..++|++= ....+.|+... . ..++.++.. ......+|+|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45677777777 2 12344443 44556666511 1 123344432 2345789999985
Q ss_pred -CCEEEEEeCCCcEEEEECCC----CCceEEEeccCC----------CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 692 -MPRLATSSFDKTVRVWDADN----PGYSLRTFMGHS----------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 692 -~~~Lasgs~Dg~V~iWD~~~----~~~~~~~~~~h~----------~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
...||+....|...|||+.. ....+.....+. +.-..|.|.++...+| .|+ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 45899999999999999921 011111111111 2234788988877666 444 458999999987
Q ss_pred ceEEEEe--eCCceEEEEEecCC--CEEEEEcCCCcEEEEcCC
Q 003106 757 SCTRVFK--VESFCCWCVNAMNR--PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 757 ~~~~~~~--~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~ 795 (847)
.....+. .....+..+..... ..++.. +...|..++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 6533121 22334444443332 333333 34555555543
|
These proteins are found in fungi. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=48.57 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=83.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
..+.|.++.|++|.+.||+--.|++|-+++....+. ..+.+..+..|....|+.+ ..+|.... ..|-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchh
Confidence 457999999999999999999999999998743222 2233344556899999866 45665553 44777777665
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCc
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 757 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~ 757 (847)
...++..+.|...|.-..|+++...++++.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5667777888888988899988765554444 34455555555543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=14 Score=40.96 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
...+.++.+.+++.+++++. .|.+.. ..+..+...... ..-...++++.+.+++. +++.+ ..|.+++=....|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45689999999886665554 554442 222222222222 23456789999999877 44344 467665333444433
Q ss_pred EEEEeeC----CceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 759 TRVFKVE----SFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 759 ~~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
-...... ...+..+.+.....+|.....|.+...
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEe
Confidence 2222211 223455555556667887777766543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.25 E-value=13 Score=39.38 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=67.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee-EEEccC--CCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWH-TDTLKSK-TNLEEH--SSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP 712 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd-~~~~~~~-~~l~~h--~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~ 712 (847)
.+..-.|++++...+....+..++++. ...+... ..+... ...|+.++++|||.+++... .++.|.|--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 566778889977777766666777774 2333222 122211 12899999999999886655 3567777655421
Q ss_pred --C------ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 713 --G------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 713 --~------~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+ ..+.........|..++|.+++..++++...++.+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 2 1112222335679999999998755544444554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.8 Score=45.95 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred CEEEEEEcCCCCEEEEEe-CC--CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCCce
Q 003106 640 KVICCHFSSDGKLLATGG-HD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 715 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs-~D--g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD-~~~~~~~ 715 (847)
.+.+.++++|++.+|... .+ ..|+++... .....+. ....++.-.|++++...+....+..++++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 788999999999887765 23 345555443 3222221 223688889999977666666667777774 2221222
Q ss_pred EEEec--cCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECC
Q 003106 716 LRTFM--GHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSIN 754 (847)
Q Consensus 716 ~~~~~--~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~ 754 (847)
..... .-...|.++.++|||.++++... .++.|.|--+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 22221 11228999999999999876663 34666666543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.95 E-value=3.8 Score=46.07 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecC---CCCEEEEEEcCCCCEEEEEeC--------------------CCcEEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRAS---TSKVICCHFSSDGKLLATGGH--------------------DKKAVLWH 666 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h---~~~V~~l~fspdg~~Lasgs~--------------------Dg~V~vwd 666 (847)
.+...+.+-++|-++ +..+...... ...-.++-|.|.-+.++|... -.+|.|||
T Consensus 152 ~G~g~Ggf~llD~~t---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 152 DGNGPGGFVLLDGET---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp TS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred CCCCCCcEEEEcCcc---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 344445555666553 4455544432 334567888888888888653 25799999
Q ss_pred CCCCceeEEEccCC--CCeEEEEEcCC--CCEEEEE-eCCCcEEEEEC-CCCCc---eEEEecc----------------
Q 003106 667 TDTLKSKTNLEEHS--SLITDVRFSPS--MPRLATS-SFDKTVRVWDA-DNPGY---SLRTFMG---------------- 721 (847)
Q Consensus 667 ~~~~~~~~~l~~h~--~~I~~v~fsp~--~~~Lasg-s~Dg~V~iWD~-~~~~~---~~~~~~~---------------- 721 (847)
+.+.+.+.++.--. ..+..|+|..+ ..+-+++ ....+|..|-- +.+.. .+..+..
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccc
Confidence 99999999987433 34678888654 4443333 34555555433 32111 1111110
Q ss_pred -CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 722 -HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 722 -h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
-..-|+.|..+.|.++|.+++-.+|.||.||+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 12457999999999999999999999999999864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.31 Score=37.11 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
...|.+++|+|..++||.++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999983
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.6 Score=44.67 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=58.8
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 639 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTDT--LK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs-----------~Dg-~V~vwd~~~--~~--~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....|...-...+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999877753 223 677776432 33 223443334456889999988 44445454
Q ss_pred cEEEEECCCCC----c---eEEEecc----CCCCeEEEEEecCCCeEEEEE
Q 003106 703 TVRVWDADNPG----Y---SLRTFMG----HSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 703 ~V~iWD~~~~~----~---~~~~~~~----h~~~V~sl~fsp~g~~ll~s~ 742 (847)
.+++.|....+ . .+..+.. +...+..++|.|+|..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44454654211 1 1222322 134477899999987444333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.95 Score=53.83 Aligned_cols=143 Identities=9% Similarity=0.081 Sum_probs=76.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----------------------KAVLWHTDTLK 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------------------~V~vwd~~~~~ 671 (847)
..+.+||..+. .|..+..+.........+.+ +|++.+.||.++ .|..||.++.+
T Consensus 367 ~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 367 RTIECYTMGDD-KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred ceEEEEECCCC-eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 46889998887 66665554433322222332 688888887653 46778877543
Q ss_pred ee--EEEccCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CCc-eEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 672 SK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADN-PGY-SLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 672 ~~--~~l~~h~~~I~~v~fsp~~~~Lasgs~D------g~V~iWD~~~-~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
-. ..+....... +++ .-+++..+.|+.+ ..|..||.++ ... .+..+......+..+.+ +..+++.
T Consensus 444 W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~ 518 (557)
T PHA02713 444 WETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMML 518 (557)
T ss_pred EeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEE
Confidence 32 2121111111 122 2235555666654 2467899886 322 22333322222333333 3458889
Q ss_pred EeCCC--cEEEEECCCCceEEEEeeC
Q 003106 742 CDGDG--EIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 742 ~s~Dg--~V~iWD~~~~~~~~~~~~~ 765 (847)
|+.|+ .|..||+.+.+-......|
T Consensus 519 Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred eeecceeehhhcCcccccccchhhhc
Confidence 99888 7788888877654443333
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.3 Score=50.29 Aligned_cols=136 Identities=11% Similarity=0.055 Sum_probs=65.5
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeE--EEccCCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKT--NLEEHSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~--~l~~h~~~I~~v~f 688 (847)
.+..||..+. .|..+..+........++.+ ++++++.||.+ ..|.+||..+.+-.. .+...... .+++.
T Consensus 312 ~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~ 387 (534)
T PHA03098 312 SVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN 387 (534)
T ss_pred cEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE
Confidence 4567777766 55544433322222222222 67788888865 347778877544321 11111111 12222
Q ss_pred cCCCCEEEEEeCC------CcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEEC
Q 003106 689 SPSMPRLATSSFD------KTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSI 753 (847)
Q Consensus 689 sp~~~~Lasgs~D------g~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~D--------g~V~iWD~ 753 (847)
-+++.++.|+.+ ..|.+||..+...... .+...... .+++.. + +.+++.|+.+ ..+.+||.
T Consensus 388 -~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 388 -VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred -ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE-C-CEEEEECCccCCCCCcccceEEEecC
Confidence 245556666632 3588899876322111 11101111 122222 2 3466666643 23888998
Q ss_pred CCCceE
Q 003106 754 NNGSCT 759 (847)
Q Consensus 754 ~~~~~~ 759 (847)
++++..
T Consensus 464 ~~~~W~ 469 (534)
T PHA03098 464 VTNKWT 469 (534)
T ss_pred CCCcee
Confidence 876543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.54 E-value=17 Score=44.58 Aligned_cols=149 Identities=16% Similarity=0.242 Sum_probs=97.4
Q ss_pred CEEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 640 KVICCHFSSD-GKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 640 ~V~~l~fspd-g~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.|.++.|..| +.++++|.. .|.|.||.+..+..+..+..+ .+.|.++..- +|++||.- +-.|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEE
Confidence 4666679888 678887752 477888887764444444332 3455555432 35555443 578999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--CceEEEE-eeCCceEEEEEecCCCEEEEE
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRVF-KVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~~~~~~-~~~~~~v~~~~~~~~~~l~~~ 783 (847)
|+..+ ++.++.-..|...+..+...-.|+.+ +.|+.-+.|.+.-.+. |..+..- ..+..+...+...+...++.+
T Consensus 853 ye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI-~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 853 YEWTT-ERELRIECNISNPIIALDLQVKGDEI-AVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEccc-cceehhhhcccCCeEEEEEEecCcEE-EEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 99988 55666666788889999988887754 5787777777665554 3333333 245667777777777777677
Q ss_pred cCCCcEEEEc
Q 003106 784 LDAGDIQISD 793 (847)
Q Consensus 784 ~~~g~i~i~d 793 (847)
...|.+.+..
T Consensus 931 e~~gNlf~v~ 940 (1096)
T KOG1897|consen 931 ENSGNLFTVR 940 (1096)
T ss_pred cccccEEEEE
Confidence 7777766644
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=2.8 Score=49.63 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeEE--EccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCce
Q 003106 649 DGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYS 715 (847)
Q Consensus 649 dg~~Lasgs~Dg------~V~vwd~~~~~~~~~--l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~ 715 (847)
++.+++.||.++ .+..||..+.+.... +.........+.+ +++.++.||.+ ..+.+||..+...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W- 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW- 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce-
Confidence 566777776543 577788776544221 1111112222222 46666777765 3477888876322
Q ss_pred EEEecc--CCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCce
Q 003106 716 LRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 758 (847)
Q Consensus 716 ~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D------g~V~iWD~~~~~~ 758 (847)
..... +...-.+++.. ++.+++.|+.+ ..|.+||+.+++.
T Consensus 371 -~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 -REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred -eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 11111 11111122222 34566677632 4588999887653
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.46 E-value=17 Score=38.72 Aligned_cols=142 Identities=14% Similarity=0.058 Sum_probs=91.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fs 689 (847)
.+..+++.|+.+......+..+.. .+.-.++.+ .|++...+..|.-+.+.|+.+. .+...+.........++++
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS 180 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS 180 (370)
T ss_pred CCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe
Confidence 456789999998755555554432 144455555 5889988886767778888743 3344444445555677777
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
|++-+.++.|+-+.|-|+.++..++..-.-..+ .++++..+++.. ++ +.. +--|.+-|..+.+....+
T Consensus 181 --Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~-vvy-~egvlivd~s~~ssp~~~ 249 (370)
T COG5276 181 --GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL-VVY-DEGVLIVDVSGPSSPTVF 249 (370)
T ss_pred --cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE-EEc-ccceEEEecCCCCCceEe
Confidence 778888889999999999986554433222233 788888887733 33 333 445667787766544443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.4 Score=48.26 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceeE--EEccCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCCce-EEE
Q 003106 649 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS-LRT 718 (847)
Q Consensus 649 dg~~Lasgs~Dg-----~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~~~~Lasgs~D--g~V~iWD~~~~~~~-~~~ 718 (847)
++.++++||.++ ++..||..+.+... .+.........+. -++...+.|+.+ .++..||..+.... +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776543 46678877644322 1111111112222 246566777653 45888887652211 111
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCce
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSC 758 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~~~~~ 758 (847)
+....... +++.. + +.+.+.|+.++ .+.+||.++..-
T Consensus 349 l~~~r~~~-~~~~~-~-g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVASI-N-NVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEEE-C-CEEEEecCcCCCCccEEEEeCCCCEE
Confidence 11111111 22222 2 45777777553 477888887653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.9 Score=41.94 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=71.1
Q ss_pred cCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEE--CCCC-----ceeEEEcc----CCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 636 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWH--TDTL-----KSKTNLEE----HSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Las-gs~Dg~V~vwd--~~~~-----~~~~~l~~----h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
..-+.-+.++|+.|-+.+.. -+.+-+|.-|| ..+| +.+..++. ..-.--.+++..+|++.+++-..++
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 33444567899988776654 45677888888 4444 33333332 1111223445667888888888899
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCC-CeEEEEEeC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDG 744 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~ 744 (847)
|...|..+ ++.+.+++--...|+|+||--.. ..+.+|+..
T Consensus 235 V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 235 VQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 99999999 88888888888999999997432 223444443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=8.6 Score=43.57 Aligned_cols=145 Identities=10% Similarity=0.095 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcE-EEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----
Q 003106 641 VICCHFSSDGKLLATGGHDKKA-VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----- 714 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V-~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~----- 714 (847)
...+..++|+.+++.+. .|.| +-||-....-...-......++++.|.+++..++++ .+|.|.+ .... +.
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~-G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGT-GLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCC-CCccccc
Confidence 44456667777776664 3443 334432110011112234568999999998877655 4565443 3332 22
Q ss_pred eEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe---eCCceEEEEEecCCCEEEEEcCCCcE
Q 003106 715 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---VESFCCWCVNAMNRPCLWDKLDAGDI 789 (847)
Q Consensus 715 ~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~~g~i 789 (847)
.+..... -...++++.|.+++. ++ .++.+|.|.+.. ..|+.-.... .-....+.+.+.+....|....+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1222221 123488999998865 55 455577776653 4444323322 12334667777777888888888887
Q ss_pred EEE
Q 003106 790 QIS 792 (847)
Q Consensus 790 ~i~ 792 (847)
..|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.8 Score=50.21 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=73.2
Q ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeEEEccCCCCeEEEEEc--CCCCEEE
Q 003106 641 VICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLA 696 (847)
Q Consensus 641 V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~-------~-------------~~~~~l~~h~~~I~~v~fs--p~~~~La 696 (847)
|+-|.+.. +...|+.|.+||.|.+|.+++ . ++...+. -...+++|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444333 567899999999999997531 0 0111222 23468999998 7777888
Q ss_pred EEeCCCcEEEEECCCC--CceEEEeccCCCCeEEEEEecCC-----CeEEEEEeCCCcEEEEEC
Q 003106 697 TSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~--~~~~~~~~~h~~~V~sl~fsp~g-----~~ll~s~s~Dg~V~iWD~ 753 (847)
+++....|.||-.... ......-..|...|-+|+|-++. ...|++++-.|.|.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8887778888765431 11111112356678899997754 136778888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.5 Score=50.38 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=57.7
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCce
Q 003106 649 DGKLLATGGHDK------KAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYS 715 (847)
Q Consensus 649 dg~~Lasgs~Dg------~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~D------g~V~iWD~~~~~~~ 715 (847)
.+.+++.||.++ .|..||..+........ .+...-.++++.. +...++|+.| .++.+||.++...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W- 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQW- 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCce-
Confidence 456677777763 67788888664332221 1222234455543 4567888888 3577888887332
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCc
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGS 757 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg-----~V~iWD~~~~~ 757 (847)
..+..-...-..+....-+..+.+.|+.|| +|..||.++.+
T Consensus 362 -~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 362 -TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred -eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 111111111111111222345778888886 47788887765
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.85 E-value=11 Score=46.12 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=98.1
Q ss_pred eeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 604 FLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 604 ~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
++.++......|.+.++.......++.+.... -.+.|.++..- +|++||.- .-.|++|++.+.+.++.-..|...+
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPI 871 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCe
Confidence 34455567788888888887743555544333 34556665543 57777654 4689999999887777777888899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+...-.++.++.|..-+.|.+.-.+.....+..+ ..+..+.+++.+-.+.. ++ .+..+|.+.+....
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YL-GAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EE-eecccccEEEEEec
Confidence 999999999999999988877776555422222222 34667777888775533 33 55667777776543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.79 E-value=11 Score=39.92 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=82.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
..++.+|+.++.... ...+.. .----.|++. ++++..-.=.++.+.+||.++.+.+.++.-. +.=+.++ .+++.
T Consensus 68 S~l~~~d~~tg~~~~-~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~ 141 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQ-SVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKR 141 (264)
T ss_dssp EEEEEEETTTSSEEE-EEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSC
T ss_pred EEEEEEECCCCcEEE-EEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCE
Confidence 467888888873222 222221 1111233333 3334444456889999999999999888633 3445666 45778
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|+.+.....|+++|..+ ...++.+... -..++.|.|. +| .++|=.=....|...|..+|+++..+.
T Consensus 142 Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp EEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred EEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 88888788899999887 4555544322 1346667776 33 466555556678888888888887765
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.6 Score=51.79 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCceeEEE--ccCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNL--EEHS 680 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l--~~h~ 680 (847)
...+.|||...+ .++....+ ...+.|.+++|.. ||..+++.|..+.|.+|.-. +...++.+ ..|+
T Consensus 50 ~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 50 RSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred CCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence 457899999987 44444444 5678899999975 88999999999999998531 12333333 3444
Q ss_pred -CCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 681 -SLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 681 -~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 128 ~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 128 PHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 679999999999655444 3567777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.56 E-value=19 Score=44.30 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCc
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-------------DVRFSP--SMPRLATSSF----------DKT 703 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~-------------~v~fsp--~~~~Lasgs~----------Dg~ 703 (847)
++++|+.++.|+.|.-.|.++|+.+..|.. .+.|. .+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 345888899999999999999999877632 22110 011112 1345666642 688
Q ss_pred EEEEECCCCCceEEEecc-C----------------CCCe-EEEEEecCCCeEEEEE-----------------eCCCcE
Q 003106 704 VRVWDADNPGYSLRTFMG-H----------------SASV-MSLDFHPNKDDLICSC-----------------DGDGEI 748 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~-h----------------~~~V-~sl~fsp~g~~ll~s~-----------------s~Dg~V 748 (847)
|+-+|+++ ++.+-.+.. . ...+ ..+++++....+++-. ...+.|
T Consensus 338 I~A~Da~T-Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNT-GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCC-CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 99999999 555544421 0 0111 2234444433222100 123567
Q ss_pred EEEECCCCceEEEEeeCCceEEE-----------EEe-cC--CCEEEEEcCCCcEEEEcCCc
Q 003106 749 RYWSINNGSCTRVFKVESFCCWC-----------VNA-MN--RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 749 ~iWD~~~~~~~~~~~~~~~~v~~-----------~~~-~~--~~~l~~~~~~g~i~i~d~~~ 796 (847)
.-.|+++|+.+-.+.....-++. +.. .. ...++.+..+|.+.++|...
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~t 478 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRT 478 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCC
Confidence 77888888877766542222221 211 11 13677888888888888653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.53 E-value=29 Score=39.48 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEeccCCceeeE--eEEeecCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECC--CCc-------eeE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFSS----DGKLLATGGHDKKAVLWHTD--TLK-------SKT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~--~~~l~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~vwd~~--~~~-------~~~ 674 (847)
.++..|.+||++...+ .++. +..-..-..+|..|.+-. .....++.=.-+++.||.+. .+. .+.
T Consensus 42 vGS~~G~LrIy~P~~~-~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~ 120 (418)
T PF14727_consen 42 VGSYSGILRIYDPSGN-EFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLE 120 (418)
T ss_pred EeccccEEEEEccCCC-CCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEE
Confidence 3566788888887554 2221 211223456777776542 23333333567788888873 111 222
Q ss_pred EEccCCC--CeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 675 NLEEHSS--LITDVRFSP----S-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 675 ~l~~h~~--~I~~v~fsp----~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
.+..|.- ....+++-| . ..+|++=+.||.+.+|+-+. .....+....--.-.++|.+..+.+ ++++.+..
T Consensus 121 ~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~llPgPl~Y~~~tDsf-vt~sss~~ 197 (418)
T PF14727_consen 121 LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--FAFSRFLPDFLLPGPLCYCPRTDSF-VTASSSWT 197 (418)
T ss_pred EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--EEEEEEcCCCCCCcCeEEeecCCEE-EEecCcee
Confidence 2333432 122233222 2 35778889999999999876 2223332222233347788776644 47777788
Q ss_pred EEEEEC
Q 003106 748 IRYWSI 753 (847)
Q Consensus 748 V~iWD~ 753 (847)
|..|..
T Consensus 198 l~~Yky 203 (418)
T PF14727_consen 198 LECYKY 203 (418)
T ss_pred EEEecH
Confidence 888865
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.18 E-value=23 Score=37.50 Aligned_cols=178 Identities=11% Similarity=-0.025 Sum_probs=98.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEcCCCCE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPR 694 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fsp~~~~ 694 (847)
.|...|-++....+.....+.-........|.++|++-+|+.. |.---.|. ....+++|... ...-+.|+..|+|..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP-a~~~i~vfpaPqG~gpyGi~atpdGsv 202 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP-ARNVISVFPAPQGGGPYGICATPDGSV 202 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc-ccCceeeeccCCCCCCcceEECCCCcE
Confidence 4555555544111111122333456778889999999888752 11111111 11223333322 233567888999998
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE-EEEeeCCceEEEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~-~~~~~~~~~v~~~ 772 (847)
-++.-.+..|-..|..+....+... ..-......+--+|.|. +.+|....+.+..||..+..-+ ..+.+....-.++
T Consensus 203 wyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~ 281 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSM 281 (353)
T ss_pred EEEeccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccceeeeCCCCCCCccee
Confidence 8887778888877776622111111 12122334455566665 5557666788888887765422 2223334445667
Q ss_pred EecCCCEEEE-EcCCCcEEEEcCCc
Q 003106 773 NAMNRPCLWD-KLDAGDIQISDSLF 796 (847)
Q Consensus 773 ~~~~~~~l~~-~~~~g~i~i~d~~~ 796 (847)
..+...++|. -...+.|.-+|...
T Consensus 282 rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 282 RVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeccCCcEEeeccccCceeecCccc
Confidence 7778888887 55666677777543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=90.94 E-value=8.3 Score=42.99 Aligned_cols=87 Identities=15% Similarity=0.009 Sum_probs=48.5
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc
Q 003106 645 HFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 721 (847)
Q Consensus 645 ~fspdg~~Lasgs~-Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~ 721 (847)
+|..||+.|+.++. || .+.+.|+.+++....-.+-........++++.+.|+-...+..|+-.|+++ .+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC
Confidence 56779976665554 55 566778888877654443223334566788888887666677899999998 444455555
Q ss_pred CCCCeEEEEEe
Q 003106 722 HSASVMSLDFH 732 (847)
Q Consensus 722 h~~~V~sl~fs 732 (847)
....+-...|.
T Consensus 121 p~~~~g~gt~v 131 (386)
T PF14583_consen 121 PDDWKGYGTWV 131 (386)
T ss_dssp -TTEEEEEEEE
T ss_pred Cccccccccee
Confidence 55556556664
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.71 E-value=17 Score=40.81 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=66.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~ 725 (847)
|+ .++.+..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++++|.++ +..+..+.... -.
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCeE
Confidence 44 4555578888988998888866443222 12233333333564 88888899999999976 66665555444 11
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+..-.+-.++ .+..++.|+.+...|..+|..+-.+..
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 2222222233 233444678888888888876555443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.62 E-value=17 Score=44.50 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C--------C-c--eEEEe--------ccCCCCeEEEEEecCC---Ce
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADN-P--------G-Y--SLRTF--------MGHSASVMSLDFHPNK---DD 737 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~-~--------~-~--~~~~~--------~~h~~~V~sl~fsp~g---~~ 737 (847)
-.|..|.++++|++|+..|..|. .|-.+.. . + . ..+++ ..+...|..+.|||.+ .+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35888999999999988887654 4433321 0 1 1 11121 1345678999999974 44
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 003106 738 LICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 738 ll~s~s~Dg~V~iWD~~~~ 756 (847)
++ .=..|++||+||+...
T Consensus 164 l~-vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LV-VLTSDNTLRLYDISDP 181 (717)
T ss_pred EE-EEecCCEEEEEecCCC
Confidence 55 5556999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.3 Score=45.83 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=45.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEE-------c-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-------E-------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-------~-------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..++||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447889999999999999999987765432 1 2345577777777776555544 56677777653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.96 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCC
Q 003106 724 ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~ 755 (847)
+.|.++.|+|... .+|+.+..-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998655 6887888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.1 Score=33.26 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=26.5
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 003106 639 SKVICCHFSSD-G--KLLATGGHDKKAVLWHTDT 669 (847)
Q Consensus 639 ~~V~~l~fspd-g--~~Lasgs~Dg~V~vwd~~~ 669 (847)
+.|++|+|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899988889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.96 E-value=7.1 Score=44.44 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CCce---EEEe-------c-cCCCCeEEEEEecCC--CeEEE
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYS---LRTF-------M-GHSASVMSLDFHPNK--DDLIC 740 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~--------~~~~---~~~~-------~-~h~~~V~sl~fsp~g--~~ll~ 740 (847)
.|..|..++.|..++-.+.+|.+.++=.+. .++. .+++ . ...-.+..++|||+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999998888898766543221 0211 1111 1 112246678899986 33444
Q ss_pred EEeCCCcEEEEECCCCceE
Q 003106 741 SCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 741 s~s~Dg~V~iWD~~~~~~~ 759 (847)
.-+.|.+|||||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 5566999999999876544
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.72 E-value=56 Score=40.69 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=90.0
Q ss_pred CCCcEEEEeccCCceeeEeEEe-ecCCCCEEEEEEcCCCC--EEEEEeC-----------CCcEEEEECC-CCceeEEEc
Q 003106 613 RDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGK--LLATGGH-----------DKKAVLWHTD-TLKSKTNLE 677 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~fspdg~--~Lasgs~-----------Dg~V~vwd~~-~~~~~~~l~ 677 (847)
.-..|++.|..++...-.+..- ..-.-.|.++.|+.... ++++|+. +|.++.|++- .++.+.-+.
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 4446888888877322221111 12233567777876433 3444432 3446666643 344333221
Q ss_pred --cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 678 --EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 678 --~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
.-.+.| .+++|-..++++|- ...+++||+-. +..++..+ .....|+.+.|.. .++++.-..| .|.++-.
T Consensus 931 ~T~~~~~v--~Ai~~f~~~~Lagv-G~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~--~RI~VgD~qe-SV~~~~y 1003 (1205)
T KOG1898|consen 931 KTEIPGPV--GAICPFQGRVLAGV-GRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYG--ARIVVGDIQE-SVHFVRY 1003 (1205)
T ss_pred ccCCCccc--eEEeccCCEEEEec-ccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecc--eEEEEeeccc-eEEEEEE
Confidence 112333 34566666665554 57899999986 44444332 2345677777763 3555433344 4544433
Q ss_pred CC-CceEEEEeeC--CceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 754 NN-GSCTRVFKVE--SFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 754 ~~-~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
+. ++.+..|... ...|.++...+...+..+..-|.+.+..
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEE
Confidence 32 3344455433 3456666655655665555566655543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.69 E-value=8.2 Score=39.03 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCC
Q 003106 649 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSAS 725 (847)
Q Consensus 649 dg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~ 725 (847)
+|.+|.+.+. ...|++||+++++.+..-+-....+..=-...-+++++.-. .||.-.++|.++ .+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 5666666654 34799999999888765443222222222222355554443 488889999988 55555553 2344
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
-+.++ .|+++++ .++...++++-|.++.....++
T Consensus 133 GWgLt--~d~~~Li-msdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 133 GWGLT--SDDKNLI-MSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred ceeee--cCCcceE-eeCCceEEEecCHHHhhhcceE
Confidence 45555 4456666 4444567888888776544433
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.57 E-value=30 Score=39.82 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEc-----cCCCCeEEEEEcCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 692 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~-----~h~~~I~~v~fsp~~ 692 (847)
.-...+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 445678999999998877765469999998654432 21111 124668999999885
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.45 E-value=3.9 Score=46.37 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=64.2
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC----eEEEEEcCC-----------
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPS----------- 691 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----I~~v~fsp~----------- 691 (847)
.......+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.+++..+. |....-...
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 44556667777888999999999999888877799999999999999988876543 111111110
Q ss_pred ---CCEE-EEEeCCCcEEEEECCCCCceEEEec
Q 003106 692 ---MPRL-ATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 692 ---~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
..+| +-+-.-|.|-||++++ +..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCC-CCEEEEEE
Confidence 1122 3344578888888887 55555443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.11 E-value=46 Score=37.93 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=99.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----------------
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----------------- 713 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~----------------- 713 (847)
.+|++=+.||.+.+|+-+.....+.+.. ---.-.+.|.+..+.|++++.+..|..|....-.
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 5778889999999999876555555543 2233567888888899999999999998763210
Q ss_pred --ce-E--EEeccCCCCeEEEE---EecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE--e--cCC----
Q 003106 714 --YS-L--RTFMGHSASVMSLD---FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN--A--MNR---- 777 (847)
Q Consensus 714 --~~-~--~~~~~h~~~V~sl~---fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~--~--~~~---- 777 (847)
+. . .++. -...|..|. ++.....+++-| +.++.+.+-. |......+-......... . ...
T Consensus 225 ~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~ 300 (418)
T PF14727_consen 225 SGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTR 300 (418)
T ss_pred ccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence 00 0 0110 112233333 332333455444 4566666653 543333333222211111 1 111
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+..++.++.+.+|.... .++.... ........+.....-.++|++=+.||.|.+--+||
T Consensus 301 ~~llV~t~t~~LlVy~d~~---L~WsA~l-----~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYEDTT---LVWSAQL-----PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEecCCeEEEEeCCe---EEEecCC-----CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2377788888888876321 1111111 11111111121222367899999999999988886
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.99 E-value=6.2 Score=44.33 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C----ce--e-EEEcc----CCCCeEEEEEcCCCCEEEEEeCC----
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-L----KS--K-TNLEE----HSSLITDVRFSPSMPRLATSSFD---- 701 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~----~~--~-~~l~~----h~~~I~~v~fsp~~~~Lasgs~D---- 701 (847)
....+.|+|.+++ +++ ++.+..+++.|.+. + +. + ..+.. +...+..++|.|||.+.++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456788998888 444 44444334445532 1 21 1 12222 13447789999999866554421
Q ss_pred ---------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 702 ---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 702 ---------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
|.|.-+|.+. ..+..+...-.....++|+++|. ++++
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg--~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDG--GKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred eccCCCccCcccccCceEEEEecCC--CeEEEEecCcCCCccceECCCCC-EEEE
Confidence 3344455543 23334432234467899999987 4434
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.96 E-value=37 Score=38.02 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC---CC
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SA 724 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h---~~ 724 (847)
+|+ |+.++.++.++.+|.++++.+..+.... ..+..-.+-.++ .++.++.|+.+...|..+ +..+-.+..- ..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~t-G~~~W~~~~~~~~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADT-GTLKWTYETPAPLSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccC-CcEEEEEecCCcccc
Confidence 665 7777889999999998899888877655 112222222233 344444678888888777 4443332211 11
Q ss_pred CeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEE
Q 003106 725 SVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRV 761 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~ 761 (847)
.+..--...++ .++.+.. ++.+.-.|+++|..+-.
T Consensus 188 ~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 188 SIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ccccCceeecc--eEEEecCCCcceEEEEEccCCcEeee
Confidence 11110011122 2334444 55677777777765554
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.81 E-value=38 Score=36.59 Aligned_cols=165 Identities=12% Similarity=0.108 Sum_probs=85.3
Q ss_pred cEEEEeccCCceeeEeEEee----cCCCCEEEEEEcCCC-----CEEEEE-eCCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVR----ASTSKVICCHFSSDG-----KLLATG-GHDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~----~h~~~V~~l~fspdg-----~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
++-+||+.++...+. ..+. ...+.+.++++.... .+++.+ +..+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~-~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRR-YPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEE-EE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEE-EECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 455677777732221 1121 134567888887622 233333 33468999999988776665432
Q ss_pred -------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----CC--------ceEEEeccCC-CCeEEE
Q 003106 680 -------------SSLITDVRFSP---SMPRLATSSFDKTVRVWDADN-----PG--------YSLRTFMGHS-ASVMSL 729 (847)
Q Consensus 680 -------------~~~I~~v~fsp---~~~~Lasgs~Dg~V~iWD~~~-----~~--------~~~~~~~~h~-~~V~sl 729 (847)
.+.|..++.+| +++.|+-+...+. ++|.+.+ .. ..+..+ |.. .....+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence 12355666655 5566665554332 3333322 00 012222 222 355678
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC---ceEEEEeeC-C--ceEEEEEecC--CCEEEEEc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKVE-S--FCCWCVNAMN--RPCLWDKL 784 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~-~--~~v~~~~~~~--~~~l~~~~ 784 (847)
+++++|. ++++--..+.|..||..+. +....+... . .++..+.+.. ...+|..+
T Consensus 192 ~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 192 AIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8888765 6667777889999999862 122223222 2 3456666666 55665544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=88.41 E-value=52 Score=39.46 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
.+.|..|.|..+++.+++...+|.|.+||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 567999999999999999999999999999
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.40 E-value=6.7 Score=40.02 Aligned_cols=102 Identities=14% Similarity=0.255 Sum_probs=64.1
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC---C---cEEEE---ECC-CCCceEE-
Q 003106 651 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW---DAD-NPGYSLR- 717 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D---g---~V~iW---D~~-~~~~~~~- 717 (847)
+.|+.+...++|.+|++. ..+...+|.. -+.|..+.++..|++|+|--.+ . .+|+| +.. .....++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444566789999988 3455556643 3789999999999999997532 2 56664 322 1111111
Q ss_pred EeccC---------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 718 TFMGH---------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 718 ~~~~h---------------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.|| ...+.+|+..|-..++++.+ ++++.+|.++.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence 22222 33567788888766677444 56888887654
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.14 E-value=8.6 Score=40.35 Aligned_cols=142 Identities=17% Similarity=0.253 Sum_probs=76.5
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCC--Ccee-EEE---ccCCCCeEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-D--KKAVLWHTDT--LKSK-TNL---EEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-D--g~V~vwd~~~--~~~~-~~l---~~h~~~I~~v~ 687 (847)
..+||+.++ +++.+... ...-+.+-.|-+||++|.+|+. | ..|++++..+ ..+. .+. -....+=-++.
T Consensus 48 s~~yD~~tn-~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTN-TFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCC-cEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 458999887 55554321 1222233457789999999975 3 4588888643 1111 111 01122223344
Q ss_pred EcCCCCEEEEEeCCC-cEEEEECCCCCc-eEE-EeccC------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSMPRLATSSFDK-TVRVWDADNPGY-SLR-TFMGH------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg-~V~iWD~~~~~~-~~~-~~~~h------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.-+||+.|+.|+.+. +.-+|.-+.... ... .+... ...--.+...|+|+ +|+.+.. .-.|||..+.+.
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~--~s~i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANR--GSIIYDYKTNTV 201 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcC--CcEEEeCCCCeE
Confidence 567999998887654 455665432111 111 11110 11112455678887 5556653 355779988877
Q ss_pred EEEEee
Q 003106 759 TRVFKV 764 (847)
Q Consensus 759 ~~~~~~ 764 (847)
++.+..
T Consensus 202 ~~~lP~ 207 (243)
T PF07250_consen 202 VRTLPD 207 (243)
T ss_pred EeeCCC
Confidence 676654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.9 Score=43.26 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=48.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEE------ec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRT------FM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~------~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+..++++|++.+.+|.+++||+.+....+.. +. .....|..+.++.+|.- +++-+ +|...+||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEeccc
Confidence 4456889999999999999999983222111 11 24566888888877663 43444 5788888877
Q ss_pred CCceEEE
Q 003106 755 NGSCTRV 761 (847)
Q Consensus 755 ~~~~~~~ 761 (847)
-+.-++.
T Consensus 96 L~~W~~v 102 (219)
T PF07569_consen 96 LGCWIRV 102 (219)
T ss_pred cceeEEe
Confidence 6554443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.81 E-value=7.8 Score=44.12 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=30.5
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.|..|..++.|..++++| .+|.+.++=.+....-..|+.....|.|-.+.-...+
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ 159 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF 159 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeEEEEchhhcCccceecCCCceEEEEeeccccee
Confidence 367777888888655444 4776655544433334455555555555544333333
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.21 E-value=52 Score=36.32 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 003106 649 DGKLLATGGHD-----KKAVLWHTDTLK 671 (847)
Q Consensus 649 dg~~Lasgs~D-----g~V~vwd~~~~~ 671 (847)
++++++.|+.+ ..|.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56777787754 357788887643
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=46 Score=35.61 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=92.5
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 651 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~ 651 (847)
+|.|+.+.+....+..+- .++...+|.-... .+..+...-+.|+.+.........+......-..++.| |+
T Consensus 109 ~IvDIS~P~sP~~~~~ln----t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn 182 (370)
T COG5276 109 RIVDISTPDSPTLIGFLN----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN 182 (370)
T ss_pred EEEeccCCCCcceecccc----CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC
Confidence 889998876654433322 2222333322222 22234455667777654445555555555555667775 67
Q ss_pred EEEEEeCCCcEEEEECCCCce---eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE
Q 003106 652 LLATGGHDKKAVLWHTDTLKS---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (847)
Q Consensus 652 ~Lasgs~Dg~V~vwd~~~~~~---~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s 728 (847)
+-..+..|+-++|-|+..... +... .....+.++..+++..++ .-.|.-|.+-|..++..+...-.-....+.+
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~--vvy~egvlivd~s~~ssp~~~gsyet~~p~~ 259 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYL--VVYDEGVLIVDVSGPSSPTVFGSYETSNPVS 259 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEE--EEcccceEEEecCCCCCceEeeccccCCccc
Confidence 888888999999999875432 2222 122367787777654444 3445668888888744222111111222323
Q ss_pred E---EEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 729 L---DFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 729 l---~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+ ..+ ++ +......+.-+-+-|+.+.
T Consensus 260 ~s~v~Vs--~~-~~Yvadga~gl~~idisnp 287 (370)
T COG5276 260 ISTVPVS--GE-YAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ccceecc--cc-eeeeeccccCceeEeccCC
Confidence 3 333 33 3335555666677777653
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.08 E-value=18 Score=41.94 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=97.8
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEc-cCCCCeEEEEEcCCCCEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLE-EHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~-~h~~~I~~v~fsp~~~~La 696 (847)
+-+-.++..+..+..++ ...|+.+++..+| .+-.|+..+-+..|+.++ +....... ...+.|..|.=.|+++ |.
T Consensus 358 van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LW 433 (671)
T COG3292 358 VANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LW 433 (671)
T ss_pred EecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EE
Confidence 33344443334433333 3556777777644 555566554466677665 32222222 2346788888888887 88
Q ss_pred EEeCCCcEEEEECCCCCceEEEe--cc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTF--MG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~--~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+|.++. +.+. +.....+ .. ..+.|..+.+.++|+-.+++| + .|..|+-+.......+......-+.
T Consensus 434 IGTs~Glvk~-~pe~-~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g--~-gva~~~sq~~~~~~~l~~~~q~qy~ 508 (671)
T COG3292 434 IGTSGGLVKR-DPES-GRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG--S-GVAAWESQRRMFVPILDLTGQRQYS 508 (671)
T ss_pred EeccCCeEec-Cccc-cchhcccccccCcCCcchhhhhccCCCCceEEEec--c-eeeeeccccceecccccccceeeEE
Confidence 8888887664 2221 2222221 11 234577888999998666555 3 4789988766555555555555555
Q ss_pred EEecCCCEEEEEcCCCcEEEEc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d 793 (847)
....+...+|.....+.++.-.
T Consensus 509 f~~~~~d~vw~~~~Rg~vr~r~ 530 (671)
T COG3292 509 FVPVGGDEVWVHRLRGLVRWRH 530 (671)
T ss_pred EEEccCceEeeeeeceeeeecc
Confidence 5667788888887777666443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.01 E-value=3.1 Score=41.32 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCeEEEEEecC-----CCeEEEEEeCCCcEEEEECCC
Q 003106 724 ASVMSLDFHPN-----KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~-----g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
..|.+++|+|. ++++|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47999999984 467999999999999997664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=23 Score=41.30 Aligned_cols=134 Identities=7% Similarity=0.014 Sum_probs=63.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeE--EEccCCCCeEEEEEcCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD--KKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS 691 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~vwd~~~~~~~~--~l~~h~~~I~~v~fsp~ 691 (847)
.+..||..++ .|..+..+.........+. -++++.+.||.+ ..|..||..+.+-.. .+.........+.+ +
T Consensus 288 ~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~ 362 (480)
T PHA02790 288 NAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--N 362 (480)
T ss_pred eEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--C
Confidence 3455666655 4555444432222222222 367788888764 357788876543221 12111111122222 4
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 692 MPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 692 ~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++..+.|+.++ .+.+||.++..............-.+++. -+ ..+++.| |.+.+||.++++-.
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~-~~-~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV-FG-RRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE-EC-CEEEEEC---CceEEecCCCCcEe
Confidence 66667777543 47788887632211100011111112221 12 3466565 45788998876543
|
|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.46 E-value=61 Score=36.91 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=78.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEE--------------EccCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTN--------------LEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~--------------l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
.|..|+.. .++++.-..||.|..|... .++.... +......|..+++ ...+++....+|+|
T Consensus 177 ~vv~l~cg--~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~--G~dh~i~lt~~G~v 252 (476)
T COG5184 177 RVVKLACG--WEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAA--GADHLIALTNEGKV 252 (476)
T ss_pred heEEeecC--CceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecCchheeeecc--CCceEEEEecCCcE
Confidence 56666553 4566666778888888752 1111100 1111234544444 44578888889988
Q ss_pred EEEECCCCCce---------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----ce------EEEEe--
Q 003106 705 RVWDADNPGYS---------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SC------TRVFK-- 763 (847)
Q Consensus 705 ~iWD~~~~~~~---------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~----~~------~~~~~-- 763 (847)
+-|--...+.. +..+.+..-.+..+...-.|.+..+.-..||.|..|-+.-. .+ ..+++
T Consensus 253 y~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~ 332 (476)
T COG5184 253 YGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332 (476)
T ss_pred EEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccc
Confidence 87754432111 11111222222333333445566667788999988866421 11 12222
Q ss_pred --eCCce-EEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 764 --VESFC-CWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 764 --~~~~~-v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
..... +.|.........|..+.+|.+.-|-.
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 12222 22444456667778888887776653
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.19 E-value=22 Score=33.54 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--------ceeEEEccCCCCeEEEE---EcCC--CCEEEEEeCCCcEEEEEC
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTL--------KSKTNLEEHSSLITDVR---FSPS--MPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~--------~~~~~l~~h~~~I~~v~---fsp~--~~~Lasgs~Dg~V~iWD~ 709 (847)
.-+|......|++++.-|+|.|++.... ..+..| .-...|++|+ |.++ ...|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3455555567888888899999986532 223333 2345677775 4332 34566665 678999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCc
Q 003106 710 DNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
...... .++.-.+.|.+|.+-.- ...+++. +.+..|.-||....+
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcE
Confidence 873332 22334567777777322 1224433 335666666665444
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.84 E-value=24 Score=39.68 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC--C-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---EE
Q 003106 644 CHFSSDGKLLATGGHDKKAVLWHTDT--L-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS---LR 717 (847)
Q Consensus 644 l~fspdg~~Lasgs~Dg~V~vwd~~~--~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~---~~ 717 (847)
+-|. |.+.++.|-..|-+.=|-+.. . -++..-....++|.+|.|++|.+.||.--.|++|.+++....... ..
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 4444 444444444455566665542 1 222222345679999999999999999999999999988431111 12
Q ss_pred EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEEEEeeCCceE
Q 003106 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKVESFCC 769 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~~~~~~~~~v 769 (847)
+.+.....|...+|....+ ++..+ |.-|.+|-+... +.++..+.+...|
T Consensus 107 ~ck~k~~~IlGF~W~~s~e--~A~i~-~~G~e~y~v~pekrslRlVks~~~nv 156 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE--IAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNV 156 (657)
T ss_pred HhccCcceeEEEEEecCee--EEEEe-cCCeEEEEEchhhhhhhhhhhcccCc
Confidence 2233344588889987633 33333 334666655432 2333444444333
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=49 Score=35.47 Aligned_cols=116 Identities=10% Similarity=0.081 Sum_probs=71.2
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+-...|.++.|+|+.+.|++......-.||=..+ +..++++.- .-.....|.|..++. ++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence 34455699999999999999888777766665544 777776532 123345677777655 444666788888887776
Q ss_pred CceEEEEee---------C-CceEEEEEec-CCCEEEEEcCCCcEEEEcC
Q 003106 756 GSCTRVFKV---------E-SFCCWCVNAM-NRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 756 ~~~~~~~~~---------~-~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~ 794 (847)
...+..++. + ....-.++++ ....+|...+..-+.+|..
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 533322221 1 1112233333 3456777777766666653
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.30 E-value=81 Score=36.70 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=65.5
Q ss_pred CcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEcc----CCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEE----HSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~----h~~~I 683 (847)
..+.+||+.+. .|..+.... .......+.+..-++++++.|+.+ ..|.+||+.+.+-...-.. ....-
T Consensus 193 ~~v~~yD~~~~-~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 193 KHLYVFDLETR-TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred CcEEEEECCCC-EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 45677888776 555432110 010111111222356777777765 3578888876543221110 01111
Q ss_pred EEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCC----CcE
Q 003106 684 TDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGD----GEI 748 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~D----g~V 748 (847)
.++.. -+++.++.|+.++ .+.+||+.+... ..+.. ..... +++.. +++ +++.++.+ ..|
T Consensus 272 h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~~~R~~~-~~~~~-~gk-iyviGG~~g~~~~dv 345 (470)
T PLN02193 272 HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW--FHCSTPGDSFSIRGGA-GLEVV-QGK-VWVVYGFNGCEVDDV 345 (470)
T ss_pred eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE--EeCCCCCCCCCCCCCc-EEEEE-CCc-EEEEECCCCCccCce
Confidence 12222 2355556666543 467788876321 11110 11111 12222 344 55566654 468
Q ss_pred EEEECCCCceEE
Q 003106 749 RYWSINNGSCTR 760 (847)
Q Consensus 749 ~iWD~~~~~~~~ 760 (847)
.+||+.+.+...
T Consensus 346 ~~yD~~t~~W~~ 357 (470)
T PLN02193 346 HYYDPVQDKWTQ 357 (470)
T ss_pred EEEECCCCEEEE
Confidence 999999876543
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.14 E-value=56 Score=34.69 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=106.3
Q ss_pred cceEEEecCCCeEeecCCCeE--EeCCCCchhh------ccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEec
Q 003106 556 KPLMMFGTDGAGTLTSPSNQL--WDDKDLELRA------DMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDV 622 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~~i--WD~~~~~~~~------~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~ 622 (847)
-..|...|||..-+++....| .|-++.++.. .-...++...+|+.-.+|+..-. .+...+.+++|+.
T Consensus 106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA 185 (353)
T ss_pred CceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc
Confidence 345677888776555554433 2333333211 11122334445555555544321 1222233334433
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCCCEEEEEe
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~~~Lasgs 699 (847)
-- ...-+.|+..|||..-++.-.+..|...|..++.. ..+. .....-..|--+|.+..-+|..
T Consensus 186 Pq-------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittw 251 (353)
T COG4257 186 PQ-------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTW 251 (353)
T ss_pred CC-------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEecc
Confidence 22 23456788899999888877777787777765522 2222 1112223444466677667766
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
..+.+..||-.+....-..+.+....-.++..+..+...+ +--..|.|.-+|.++.. ..+|...
T Consensus 252 g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~-sea~agai~rfdpeta~-ftv~p~p 315 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL-SEADAGAIGRFDPETAR-FTVLPIP 315 (353)
T ss_pred CCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe-eccccCceeecCcccce-EEEecCC
Confidence 7788888888764444445556666677787777665333 44445778888877654 3444433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=84.81 E-value=13 Score=41.07 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEE----ccCCCCeEEEEEcCC---CCEEEEEeC-C-------
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTNL----EEHSSLITDVRFSPS---MPRLATSSF-D------- 701 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~l----~~h~~~I~~v~fsp~---~~~Lasgs~-D------- 701 (847)
..+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........|+|+|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999987775 5699999999 33333 2222 123456899999995 334433332 1
Q ss_pred -CcEEEEECCCCC-------ceEEEecc---CCCCeEEEEEecCCCeEEEEEeC
Q 003106 702 -KTVRVWDADNPG-------YSLRTFMG---HSASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 702 -g~V~iWD~~~~~-------~~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~ 744 (847)
..|.-|...... .++..+.. .......|.|.|+|. |+++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 234444443321 11222222 233456799999985 5555554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.75 E-value=31 Score=38.12 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=31.4
Q ss_pred CcEEEEeccCCceeeEeEEeec---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRA---STSKVICCHFSSDGKLLATGGHD-----------KKAVLWHTDTLK 671 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~D-----------g~V~vwd~~~~~ 671 (847)
..+.++|+.+. .|..+..+.. ........+..-++++++.|+.+ ..|.+||.++.+
T Consensus 101 ~~v~~yd~~t~-~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 101 SDFYSYDTVKN-EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CcEEEEECCCC-EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 46788898876 6665544311 11122222223367777887754 247788887643
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=84.60 E-value=4.2 Score=48.30 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=44.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---CCceEEEe-cc---------------------CCCCeEEEEEec---CCCeEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADN---PGYSLRTF-MG---------------------HSASVMSLDFHP---NKDDLICS 741 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~---~~~~~~~~-~~---------------------h~~~V~sl~fsp---~g~~ll~s 741 (847)
.+...|+.+..||.|...+... .+...... .. ....+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888899888877654 12221111 10 123455666665 23457779
Q ss_pred EeCCCcEEEEECCCCceEEEEee
Q 003106 742 CDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 742 ~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+.|++||+||++++.++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999776643
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.55 E-value=56 Score=34.19 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=87.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE--EcCCCCE--EEEEeC--CCcEEEEECCCCCceEEEe
Q 003106 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR--FSPSMPR--LATSSF--DKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 646 fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~--fsp~~~~--Lasgs~--Dg~V~iWD~~~~~~~~~~~ 719 (847)
-+|+...|++....+-++|||+. ++.+..+....-.-.+++ |--.|.. |+.+|. ..+|.+|.++-....+..+
T Consensus 63 t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~si 141 (364)
T COG4247 63 TNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESI 141 (364)
T ss_pred CCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeec
Confidence 35677788888888889999987 555555532221111222 2223332 444442 4568888887533334433
Q ss_pred cc-------CCCCeEEEEEec--C-CCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 720 MG-------HSASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 720 ~~-------h~~~V~sl~fsp--~-g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
.. ..+.++.++... . |.++++....+|.|+-|.+-. .+.++.|+.....--|+.-+....++.
T Consensus 142 tD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYI 221 (364)
T COG4247 142 TDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYI 221 (364)
T ss_pred cCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEE
Confidence 21 234566666643 3 556666777889998887642 356777777766666666666667777
Q ss_pred EcCCCcEEEEc
Q 003106 783 KLDAGDIQISD 793 (847)
Q Consensus 783 ~~~~g~i~i~d 793 (847)
+.++-.|.-++
T Consensus 222 aeEdvaiWK~~ 232 (364)
T COG4247 222 AEEDVAIWKYE 232 (364)
T ss_pred eeccceeeecc
Confidence 66654443333
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=84.24 E-value=5.4 Score=47.41 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CceeEEE--cc--------------------CCCCeEEEEEcC----CCCEEEE
Q 003106 648 SDGKLLATGGHDKKAVLWHTDT----LKSKTNL--EE--------------------HSSLITDVRFSP----SMPRLAT 697 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l--~~--------------------h~~~I~~v~fsp----~~~~Las 697 (847)
.+...|+.+..||.+....... +...... .. ....+.+++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888899888776553 2221111 10 123456667766 6779999
Q ss_pred EeCCCcEEEEECCCCCceEEEe
Q 003106 698 SSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.+.|++||+||+.+ +.++.+.
T Consensus 236 l~~D~~LRiW~l~t-~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLET-GQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTT-TCEEEEE
T ss_pred EeCCCeEEEEECCC-CeEEEEe
Confidence 99999999999998 6665544
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.07 E-value=39 Score=40.47 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=33.4
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
-.|+|+++... .+..+.-..+.+..+.|+.+. .|++...||+|+||++-
T Consensus 64 ~~I~If~~sG~----lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNISGQ----LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecccc----chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 34677776532 333333334488899999665 55566799999999986
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.05 E-value=27 Score=35.76 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEE---ECC--CCceeE-EEccC-
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLW---HTD--TLKSKT-NLEEH- 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vw---d~~--~~~~~~-~l~~h- 679 (847)
...+|.+|++... ......++..- +.|..+.++..|++|+|--.+ ..+|+| +.. ...+++ .+-||
T Consensus 36 ~g~~Vev~~l~~~-~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~ 113 (215)
T PF14761_consen 36 SGCKVEVYDLEQE-ECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHR 113 (215)
T ss_pred CCCEEEEEEcccC-CCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccc
Confidence 4456899999843 44555555543 889999999999999996432 256775 221 112222 11121
Q ss_pred --------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 680 --------------------SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 680 --------------------~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
...+.||+-.|-...|+.|+ ++++.||.+..
T Consensus 114 v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 114 VTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 23566788777655565665 57788887754
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=84.02 E-value=18 Score=41.33 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.5
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
.+++++-..+|.|.+|+++
T Consensus 201 r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 201 RRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp TTEEEEEESSE-EEEEEE-
T ss_pred cCEEEEEeCCCcEEEEEEe
Confidence 3789999999999999986
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=83.68 E-value=73 Score=34.84 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce---eEEEcc---CCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC
Q 003106 649 DGKLLATGGHDK-----KAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 712 (847)
Q Consensus 649 dg~~Lasgs~Dg-----~V~vwd~~~~~~---~~~l~~---h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~~ 712 (847)
++++++.|+.++ .|..||+.+.+. ...+.. ..... +++.. +++..+.|+. ...|.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 566777777643 566677765443 122211 11111 22222 3555566664 235888898863
Q ss_pred CceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCC----cEEEEECCCCce
Q 003106 713 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSC 758 (847)
Q Consensus 713 ~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg----~V~iWD~~~~~~ 758 (847)
..... .+... ......+..-+ ..+++.|+.++ .+.+||+++.+.
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 32211 11111 11111222223 34777777653 356888887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=83.63 E-value=41 Score=40.29 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEc-cCC------CCeEEEEEcCCCCEEEEEeC-C---CcE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE-EHS------SLITDVRFSPSMPRLATSSF-D---KTV 704 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~-~h~------~~I~~v~fsp~~~~Lasgs~-D---g~V 704 (847)
.+.|..|.|..+++.+++.-..|.|.+||...+ +.+..++ .+. ..|....+.-..+++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999322 2211222 122 22322222222345554443 2 247
Q ss_pred EEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----C--ceEEEEEec
Q 003106 705 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----S--FCCWCVNAM 775 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~--~~v~~~~~~ 775 (847)
|++.+......+..+. .+........|+...+.+..- .+++|.+|++...+..+++... . ..+.++...
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 8888832223333332 122223334444433334323 5789999999988777766543 1 234555544
Q ss_pred CCCEEEEEcCCCcEEEEcCC
Q 003106 776 NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~ 795 (847)
...++..+ .+..|++.|..
T Consensus 287 s~nRvLLs-~~nkIyLld~~ 305 (670)
T PF10395_consen 287 SPNRVLLS-VNNKIYLLDLK 305 (670)
T ss_pred CCCeEEEE-cCCEEEEEeeh
Confidence 45555433 44566666633
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=83.55 E-value=36 Score=42.26 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=72.4
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----ceeEEEccCCCC----------eEEEEEcCCCCEEEEEeCCC
Q 003106 639 SKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSL----------ITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 639 ~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-----~~~~~l~~h~~~----------I~~v~fsp~~~~Lasgs~Dg 702 (847)
....+++|+| +.+.||.....|...|||+... ..+.....+.+. -..|.|..+.+.|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4677999999 6679999999999999999211 111111122222 23678888877787776 45
Q ss_pred cEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 703 TVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 703 ~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.+.++|+++..... .........|..+.-++.....++.-. ...|...|+..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 68899998732211 122334567878887776332221222 35787888877
|
These proteins are found in fungi. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=82.70 E-value=54 Score=35.39 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCCCCcEEEEeccCCcee--eEeEEee-cCCCCEE-EEEEcC--CCCEEEEEe-CCCcEEEEECCCCcee--EEEc----
Q 003106 611 DPRDAGGRGMDVSQGFSF--KEANSVR-ASTSKVI-CCHFSS--DGKLLATGG-HDKKAVLWHTDTLKSK--TNLE---- 677 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~--~~~~~l~-~h~~~V~-~l~fsp--dg~~Lasgs-~Dg~V~vwd~~~~~~~--~~l~---- 677 (847)
+++||+|.-|....+.+. ..+..+. .-.+.|+ .+++.. .+.+|+.+. ..++|.|||-.=.++. ..+.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 345667777775443220 1112221 1123333 455543 456777665 4689999985421110 0111
Q ss_pred ------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecC-----CCeE
Q 003106 678 ------------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN-----KDDL 738 (847)
Q Consensus 678 ------------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~-----g~~l 738 (847)
+..-.|+-..-.++++.=+.|-.-|.|-+||.. +..++.+. +.-...+.|+..|- ...|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 011122222223333333444556789999997 46666663 33445667776552 2347
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
|+---.||+|.+||..+++.+..+.....
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCC
Confidence 76777899999999999998887776543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.44 E-value=23 Score=38.16 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEcc-----CCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG------HDKKAVLWHTDTLKSKTNLEE-----HSSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~V~vwd~~~~~~~~~l~~-----h~~~ 682 (847)
-..+++||..+. .|..... +-.+.|++|.|..+.++++.|. ....+..||+++... ..+.+ -.++
T Consensus 15 C~~lC~yd~~~~-qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNS-QWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCC-EeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCc
Confidence 345778887766 4443322 2467899999997777777764 345688899886543 33333 2367
Q ss_pred eEEEEEcC-CCCEE-EEEe-C--CCcEEEEECCC
Q 003106 683 ITDVRFSP-SMPRL-ATSS-F--DKTVRVWDADN 711 (847)
Q Consensus 683 I~~v~fsp-~~~~L-asgs-~--Dg~V~iWD~~~ 711 (847)
|+.+.+.. |+..+ +.|. . +..|..||-..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 88887743 33334 3433 2 33477776554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.36 E-value=16 Score=41.62 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 649 DGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-------RLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 649 dg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-------~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|..+|+ .|+....++-.|++.|+++.++..|... -|.|.|..+ .-+.|-.|..|.-.|.|-.+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 555554 4555667888899999999999888775 577888543 23455557777777777644333222
Q ss_pred cCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCC
Q 003106 721 GHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 721 ~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
.....++.-.|+.- ..-+++.++..|.||+||--.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig 592 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG 592 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence 12233333334321 122677999999999999654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.35 E-value=0.14 Score=57.04 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=81.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEec
Q 003106 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 642 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
....|-+.+.-|+.++.+..|..||-. ++....+. ..+...+++|..+++.+ +.+-..+.+.+||+.+....-..+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677766668888888899999854 44433332 34456688888888865 4456688999999986322112222
Q ss_pred c-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 721 G-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 721 ~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
+ |.... +.|++.+..++ .+...|.|+|++..+.+.+.+...|...+.+++..
T Consensus 116 g~~s~sl--l~wsKg~~el~-ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPELV-IGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred CcchHHH--HhhccCCcccc-ccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 2 22222 67888776544 67778999999988766554444344444444433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.40 E-value=5.3 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 733 p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
|+++++++++-.++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 567888888888899999999999888877764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=80.52 E-value=17 Score=43.09 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=44.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.++++.-+|.|..++.+..||.|++|+....+...... ...+-..+.|...| |++...|..+.-|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 46677778999999999999999999976544322111 12233445565444 6666667777777543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=80.42 E-value=92 Score=34.28 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--ceeE-----EEccCCC--------CeEEEEEcCCCCE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKK------AVLWHTDT--L--KSKT-----NLEEHSS--------LITDVRFSPSMPR 694 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~------V~vwd~~~--~--~~~~-----~l~~h~~--------~I~~v~fsp~~~~ 694 (847)
-+.+..|.+.+++..+++.+++|. +..+++.. + ..+. .+..-.+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788889876667777788887 65555442 1 1111 1111111 3458888777877
Q ss_pred EEEEeCC------CcEEEEECCCCCceEEEe---------------ccCCCCeEEEEEecCCCeEEEE
Q 003106 695 LATSSFD------KTVRVWDADNPGYSLRTF---------------MGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 695 Lasgs~D------g~V~iWD~~~~~~~~~~~---------------~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+++.-.+ ..|+.+|.. +..+..+ ........+|+++|+|..+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 7777667 778888765 3333222 1134568899999999866543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=80.11 E-value=44 Score=39.06 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCcEEEEeccCCc--eeeEeEEeecC---CCC--EEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCe
Q 003106 613 RDAGGRGMDVSQGF--SFKEANSVRAS---TSK--VICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLI 683 (847)
Q Consensus 613 ~d~~v~vwd~~~~~--~~~~~~~l~~h---~~~--V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I 683 (847)
..+.|.||-+.... .-+.+..-..+ .-+ --.|.|+|....|++=..+..-.++++. +......+ ...+.|
T Consensus 80 HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~I 158 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLI 158 (671)
T ss_pred ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceE
Confidence 45678899876321 11211111111 111 2267899988888776655555566665 33444445 455789
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 003106 684 TDVRFSPSMPRLATSS-FDKTVRVWDADN 711 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~ 711 (847)
.|.+|.+||.+|+.+- ..=.-+|||-..
T Consensus 159 hCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 9999999999886653 344578898654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 847 | ||||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-13 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-13 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-10 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-10 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-10 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-09 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-08 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 7e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 2e-06 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 4e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 8e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 8e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 8e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 8e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 8e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 8e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 1e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-04 |
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 847 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.95 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.94 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.94 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.92 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.92 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.91 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.91 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.91 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.9 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.89 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.89 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.88 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.88 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.86 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.85 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.84 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.83 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.81 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.8 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.77 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.76 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.75 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.73 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.72 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.7 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.68 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.67 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.65 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.63 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.63 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.62 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.62 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.59 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.59 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.57 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.56 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.56 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.55 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.55 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.55 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.55 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.53 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.5 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.5 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.48 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.47 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.46 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.44 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.39 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.37 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.37 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.37 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.35 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.3 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.3 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.27 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.26 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.26 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.25 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.25 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.25 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.23 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.23 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.22 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.19 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.19 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.19 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.17 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.17 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.17 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.15 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.15 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.14 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.13 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.08 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.05 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.01 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.99 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.99 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.97 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.97 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.96 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.95 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.94 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.93 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.92 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.87 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.86 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.84 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.79 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.77 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.76 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.75 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.75 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.72 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.72 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.68 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.62 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.58 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.58 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.56 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.53 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.5 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.49 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.48 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.47 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.43 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.42 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.39 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.38 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.36 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.35 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.35 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.34 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.34 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.32 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.27 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.26 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.23 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.21 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.16 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.08 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.06 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.03 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.02 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.02 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.97 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.95 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.93 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.93 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.92 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.87 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.87 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.87 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.82 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.81 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.81 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.8 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.78 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.76 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.7 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.69 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.69 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.64 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.63 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.55 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.49 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.46 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.4 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.4 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.36 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.29 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.28 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.22 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.21 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.16 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.16 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.1 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.09 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.05 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.98 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.93 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.88 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.7 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.68 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.64 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.49 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.3 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.3 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.19 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.11 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.09 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.98 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.69 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.65 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.58 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.51 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.4 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.29 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.26 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.26 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.26 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.14 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.05 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.03 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.02 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.61 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.6 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.43 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.29 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.98 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.6 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 93.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.14 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.86 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.83 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.55 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.1 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.07 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.0 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.76 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.57 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 88.61 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 87.77 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 87.74 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.02 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 84.95 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 83.42 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 83.32 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 83.3 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 83.17 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 81.53 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.88 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.11 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=307.54 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=215.7
Q ss_pred CCcceEEEecCCCeEeecCC--CeEEeCCCCchh-----hccccccccCCCCCce-EEeeecCC---CCCCCCcEEEEec
Q 003106 554 TSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELR-----ADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGGRGMDV 622 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~-----~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v~vwd~ 622 (847)
..+.++.|+|||+.+++++. .++||.....+. ............+..| .+.+.+++ +++.|++|++||+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 34678999999998887654 378874321111 1111111111112223 23344554 6788999999999
Q ss_pred cCCceeeE-eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeC
Q 003106 623 SQGFSFKE-ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF 700 (847)
Q Consensus 623 ~~~~~~~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~ 700 (847)
.++..... ...+.+|.+.|++|+|+|||++|++|+.|++|+|||+++++++.++.+|...|++++|++++. +|++|+.
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~ 190 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE 190 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecc
Confidence 98754433 345679999999999999999999999999999999999999999999999999999999985 7899999
Q ss_pred CCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 701 DKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
|++|+|||+++ +..+..+. .|...+++++|+|++..+|++|+.||+|+|||+++++++..+.+|...|.++.+...
T Consensus 191 D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 191 DNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS 269 (344)
T ss_dssp TSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSS
T ss_pred ccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 99999999998 66666653 456679999999988888999999999999999999999999999999999998753
Q ss_pred -CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 778 -PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 778 -~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+.+++.++.|++||.... .++...+ +... ++++.+.+.+..+|++|+.||+|++|++.+
T Consensus 270 ~~~lasgs~D~~i~vwd~~~~--~~~~~~~--H~~~----V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 270 VPFLASLSEDCSLAVLDSSLS--ELFRSQA--HRDF----VRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SCCEEEEETTSCEEEECTTCC--EEEEECC--CSSC----EEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CeEEEEEeCCCeEEEEECCCC--cEEEEcC--CCCC----EEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 46888999999999997643 2222222 2233 444555565667899999999999999854
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=300.39 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=226.0
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..++|+|++..+++++.+ +|||+.+++....+.. +...|. +.+.+++ +++.|++|++||+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~------h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG------HTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC------CSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45578899999999999887654 8999998876554321 223333 3344444 68899999999998
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +.+.++.+|...|.+++|+|++++|++|+.|++|++||+.++.++.++.+|...|.+++|++++.+|++|+.|++
T Consensus 181 ~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp SS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 65 577788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCC-------------------CeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-------------------DDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-------------------~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|+|||+++ +.+...+.+|...|.+++|+|++ ..+|++|+.|++|++||++++.++..+.+
T Consensus 258 v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 258 VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 99999998 77888999999999999999973 23678999999999999999999999999
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|...|.++.+.. ...+++++.++.|++||....... .... .+... ++.+.+.+ ++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~--~~~~-~h~~~----v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--KTLN-AHEHF----VTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC--EEEE-CCSSC----EEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--EEEc-CCCCc----EEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 999999998764 457889999999999996532211 1111 12223 33444444 577899999999999998
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
.
T Consensus 409 ~ 409 (410)
T 1vyh_C 409 C 409 (410)
T ss_dssp -
T ss_pred C
Confidence 6
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=298.31 Aligned_cols=284 Identities=17% Similarity=0.155 Sum_probs=214.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---------eEEeCCCCchhhccccccccCCCCCce-EEeeecCC---CCCCCCcE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---------QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGG 617 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---------~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v 617 (847)
.|...+.+++|+|||+++++++.+ ++|+..++.....+... ...+...| .+.+.+++ +++.|++|
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~--~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA--GVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE--EEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc--cCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 345568899999999999987652 56666665543332111 11122223 33345555 66779999
Q ss_pred EEEeccCCceee-EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EE
Q 003106 618 RGMDVSQGFSFK-EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RL 695 (847)
Q Consensus 618 ~vwd~~~~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~L 695 (847)
++||+.++.... ......+|.+.|++|+|+||+++|++|+.|++|+|||+.+++.+..+.+|...|++|+|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998873322 2234568999999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCCceEEE--eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEE
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVN 773 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~ 773 (847)
++++.||+|+|||+++ +..+.. +..|...|++|+|+|++..+|++|+.|+.|++||+++++++..+..+...|.++.
T Consensus 198 ~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 198 LSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEEETTSCEEECCTTS-SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eeeccCCceEEEECCC-CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 9999999999999998 444433 3457788999999999888899999999999999999999999999999999998
Q ss_pred ecCC--CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 774 AMNR--PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 774 ~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+... ..|.+++.++.|++||.... .++...+ +... ++.+.+.+.++.+|++|+.||+|++|++.
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~--~~~~~~~--H~~~----V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFS--EVFRDLS--HRDF----VTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSC--EEEEECC--CSSC----EEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCCC--cEeEECC--CCCC----EEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 8643 46788999999999997643 2333222 2333 34455556678899999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-30 Score=282.83 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=223.4
Q ss_pred CCCCCCcceEEEecC----CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcE
Q 003106 550 HSGTTSKPLMMFGTD----GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGG 617 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d----G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v 617 (847)
..|...+..++|+++ +..+++++.+ +|||+.+....... ... .+...|.. .+.+++ +++.|++|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~---~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW---SLE-GHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE---EEC-CCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee---eec-cCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 456778899999875 5577776655 89998765432110 111 22233333 334443 67889999
Q ss_pred EEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 618 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 618 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
++||+.++ +.+..+..|...|.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++
T Consensus 105 ~lWd~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 105 RLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEETTTT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999987 567778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-
Q 003106 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN- 776 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~- 776 (847)
|+.||+|+|||+++ +..+.++.+|...|++|+|+|++. +|++++.|++|+|||+++++++..+.+|...|.++.+..
T Consensus 182 g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 182 GAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp EETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence 99999999999998 788899999999999999999987 667999999999999999999999999999999998874
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
...+++++.++.|++||...... ...+. .+.. .+|.+.+.+ ++.+|++++.||+|+||+..
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~~~--~~~~~-~h~~----~v~~v~~s~-~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTRTC--VHTFF-DHQD----QVWGVKYNG-NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEE--EEEEC-CCSS----CEEEEEECT-TSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCcEEEEeCCCCEE--EEEEc-CCCC----cEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 45788999999999999753322 11111 1122 344444444 67899999999999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-30 Score=284.62 Aligned_cols=284 Identities=18% Similarity=0.239 Sum_probs=215.3
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..++|+|||+++++++.+ +|||+.+...... ......+...|.. .+++++ +++.|+.+++||+..+
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 367899999999999887655 8999987643211 1111223334443 355555 6788999999999876
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.++.+..+.+|...|.+++|+|++++|++|+.|++|+|||++++ .++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 94 -~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 172 (345)
T 3fm0_A 94 -DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172 (345)
T ss_dssp --EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred -CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence 56778889999999999999999999999999999999999865 34667889999999999999999999999999
Q ss_pred cEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC---------------ceEEEEee-C
Q 003106 703 TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---------------SCTRVFKV-E 765 (847)
Q Consensus 703 ~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~---------------~~~~~~~~-~ 765 (847)
+|+|||+++.. .++.++.+|...|++|+|+|++. +|++|+.|++|+|||+... +++..+.+ |
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99999998732 34578899999999999999987 5669999999999997421 34455554 6
Q ss_pred CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccc---ee---eecccccCCCCccccccccccccCCCcEEEEEeCCCe
Q 003106 766 SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINA---NI---FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS 838 (847)
Q Consensus 766 ~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~---~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~ 838 (847)
...|+++.+.. ...+++++.++.|++|+...... .. .......+...+ +.+.+.+....+|++|+.||+
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V----~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV----NCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE----EEEEECSSSTTEEEEEETTSC
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE----eEeEEeCCCceEEEEcCCCCc
Confidence 77788888764 45688899999999998542211 01 111111123333 444445644579999999999
Q ss_pred EEEEEccC
Q 003106 839 LSSFIAGT 846 (847)
Q Consensus 839 V~vW~~gt 846 (847)
|++|++.+
T Consensus 328 v~~W~~~~ 335 (345)
T 3fm0_A 328 VAFWKYQR 335 (345)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=281.36 Aligned_cols=288 Identities=19% Similarity=0.214 Sum_probs=206.4
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..+.|+++ .+++++.+ +|||+..+.... ...+..+.+...|.. .+.+++ +++.|++|++||+.
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL--IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE--EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE--EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 4556788899987 66665444 899998753211 111112224444443 344554 67889999999986
Q ss_pred CC----ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 624 QG----FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 624 ~~----~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.. ...+.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.. .+++..+.+|...|++|+|+|++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 168 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL 168 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence 43 23456778899999999999999999999999999999999942 35677889999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC--------ceEEEEee-
Q 003106 696 ATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG--------SCTRVFKV- 764 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~--------~~~~~~~~- 764 (847)
++|+.|++|+|||+++.. .++..+.+|...|++++|+|++ ..+|++++.|++|+|||++.+ .+...+..
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc
Confidence 999999999999998622 5788899999999999999983 236779999999999999765 44555554
Q ss_pred CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC-CCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC-RECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~l~sGs~DG~V~vW~ 843 (847)
|...|.++.+.....++++..++.|++|+...............+.. ..++.+.+.+. ++.+|++|+.||+|+||+
T Consensus 249 h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~---~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 249 HKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTT---SCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred cccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccccc---ceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 77889999988778899999999999999543221122111111111 02233333343 467899999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+..
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 865
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=278.16 Aligned_cols=288 Identities=16% Similarity=0.209 Sum_probs=216.0
Q ss_pred CCCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vw 620 (847)
..|...+..++|++++ ..+++++.+ ++||+...+........... .+...|. +.+.+++ +++.|++|++|
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3566678899999976 677776655 89998653321110000111 1233333 3455555 68899999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC------CCE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------MPR 694 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~------~~~ 694 (847)
|+.++ +.+..+.+|...|.+++|++++++|++|+.|++|+|||++ +..+.++.+|...|.+++|+|. +..
T Consensus 93 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 93 DVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred ECCCC---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 99987 5677889999999999999999999999999999999997 5677888999999999999985 448
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
|++++.|++|++||+++ ......+.+|...|++++|+|++. +|++|+.||+|+|||+++++++..+..+ ..+.++.+
T Consensus 169 l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 245 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF 245 (319)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE
T ss_pred EEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE
Confidence 99999999999999998 777888999999999999999987 5669999999999999999999988765 46788888
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcccceeeecccccC-CCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYG-SDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....++....+..+++|+...............+ .......++.+.+.+ ++.+|++|+.||+|+||++.|
T Consensus 246 sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEE
T ss_pred cCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEEee
Confidence 77666666666677899885432211111101000 011122233444444 789999999999999999865
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=279.47 Aligned_cols=277 Identities=16% Similarity=0.252 Sum_probs=218.9
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+..++|++||+++++++.+ +|||+.++.....+... ......+.+.+++ +++.|+.+++||+.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-----SSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC-----CccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 345578899999999999887665 89999887654432211 1112233344444 67789999999998
Q ss_pred CCc-eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 624 QGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 624 ~~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
+.. ..+....+.+|.+.|.+++|++++ .|++|+.|++|+|||+.+++.+.++.+|...|++++|+|++++|++|+.|+
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 752 345667789999999999999876 489999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEecC-CCE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMN-RPC 779 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~-~~~ 779 (847)
+|++||+++ +.++.++.+|...|++|+|+|++. +|++|+.||+|+|||+++++.+..+.... ..+.++.+.. ...
T Consensus 207 ~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 207 SAKLWDVRE-GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp CEEEEETTT-CSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred cEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 999999998 788899999999999999999987 56699999999999999998887776443 3577777764 457
Q ss_pred EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 780 LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++..++.|++||........ ...+ +...+. .+.+.+ ++.+|++|+.||+|+||+
T Consensus 285 l~~g~~d~~i~vwd~~~~~~~~-~~~~--h~~~v~----~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKADRAG-VLAG--HDNRVS----CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCCEEE-EEEC--CSSCEE----EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCcEee-Eeec--CCCcEE----EEEEcC-CCCEEEEEcCCccEEecC
Confidence 8899999999999965432211 1111 222333 333334 678899999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=276.05 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=214.7
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||.++++++.+ +|||+.++.....+.. ....+. +.+.+++ +++.|+.|++||+.
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec------cCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34567899999999999887655 8999998765443221 112222 2334443 67889999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
++ +.+..+.+|.+.|++|+|+|++++|++|+.|++|+|||++++ .....+.+|...|++++|+| ++.+|++|+.|
T Consensus 86 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 86 TG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CC---cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 87 567788999999999999999999999999999999999876 55677899999999999999 57899999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CE
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PC 779 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 779 (847)
++|+|||+++.........+|...|..++|+|.. ..+|++|+.|++|+|||+++++++..+.+|...|.++.+... ..
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 9999999987444444445677889999998742 346779999999999999999999999999999998887654 57
Q ss_pred EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc-EEEEEeCCCeEEEEEcc
Q 003106 780 LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC-CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~l~sGs~DG~V~vW~~g 845 (847)
+++++.++.|++||...... ...+. .....+|.+.+.+.+.. ++++|+.|| +.+|+++
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKV--EKTLN-----VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EEEEETTSCEEEEETTTCCE--EEEEC-----CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred EEEEcCCCeEEEEECCCCce--eeecc-----CCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 88999999999999654322 22211 11234566666664444 577777665 6666664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=282.70 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=216.2
Q ss_pred CCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhcccccccc------------CCCCCceE-EeeecCC----CCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVED------------GSLDDNVE-SFLSHDD----TDP 612 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~------------g~~d~~v~-~~~s~d~----t~~ 612 (847)
+...+..++|+|||++++++... ++||+.+++....+...... ...+..|. +.+++++ +++
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 55677899999999999886533 89999988765433211100 00111232 3345555 678
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~ 691 (847)
.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+++++....+. +...|.+++|+| +
T Consensus 143 ~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 143 EDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred CCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 8999999999876 6677889999999999999999999999999999999999999887775 567799999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--------- 755 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--------- 755 (847)
+++|++|+.|++|+|||+++ +..+..+ .+|...|++|+|+|++. +|++|+.|++|++||+++
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccC
Confidence 99999999999999999998 6666655 57999999999999987 556999999999999975
Q ss_pred ---CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-ccCCCcEE
Q 003106 756 ---GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-RSCRECCL 830 (847)
Q Consensus 756 ---~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~l 830 (847)
+.+...+.+|...|.++.+.. ...+++++.++.|++||....... ....+ +...+....|.... ...++.+|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-~~l~~--h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-LMLQG--HRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-EEEEC--CSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEECC--CCCCEEEEEecCCcCcCCCCCEE
Confidence 346677888888898888764 457889999999999996643321 11111 22223333332110 11257899
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||+|+||++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=275.95 Aligned_cols=278 Identities=16% Similarity=0.229 Sum_probs=219.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+.+++|+|||+.+++++.+ +|||..++.....+.. .......+.+++++ +++.|+.+++|++.
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-----PCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-----CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 345578899999999999988766 8999988765443221 11122334455555 68889999999986
Q ss_pred CCc---eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC--CCCEEEEE
Q 003106 624 QGF---SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATS 698 (847)
Q Consensus 624 ~~~---~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp--~~~~Lasg 698 (847)
... .......+.+|...|.+++|++++..|++|+.|++|+|||+++++.+.++.+|...|.+++|+| ++++|++|
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 531 2234566788999999999999999999999999999999999999999999999999999988 46899999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEec-
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAM- 775 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~- 775 (847)
+.||+|++||+++ +.++..+.+|...|++++|+|++. +|++|+.|++|++||+++++.+..+..+. ..+.++.+.
T Consensus 217 s~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 217 GCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred eCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence 9999999999998 788999999999999999999987 66799999999999999998887776543 356677665
Q ss_pred CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 776 NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+...++++..++.|++||....... ....+ +...+. .+.+.+ ++.+|++|+.||+|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~--h~~~v~----~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFG--HENRVS----TLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECC--CSSCEE----EEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceE-EEEEC--CCCcEE----EEEECC-CCCEEEEEcCCCCEEecC
Confidence 4567888999999999996533221 11111 223333 344444 678999999999999995
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=283.15 Aligned_cols=285 Identities=17% Similarity=0.253 Sum_probs=220.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+..++|+|||+++++++.+ +|||+.++.....+... ......+.+.+++ +++.|+.+++||+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-----~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-----CPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-----CTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-----CCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 455678999999999999987765 89999887655433211 1112223344454 78899999999987
Q ss_pred CCc----eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE-----ccCCCCeEEEEEcC-CC
Q 003106 624 QGF----SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSP-SM 692 (847)
Q Consensus 624 ~~~----~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l-----~~h~~~I~~v~fsp-~~ 692 (847)
+.. .......+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+++.+..+ .+|...|.+++|++ ++
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence 532 22345567899999999999996 567999999999999999999998887 67999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc-----
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF----- 767 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~----- 767 (847)
++|++|+.|++|+|||++.....+..+.+|...|++|+|+|++. +|++|+.||+|+|||+++++++..+..+..
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 89999999999999999865778899999999999999999987 566999999999999999999988875432
Q ss_pred --eEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 --CCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 --~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+.++.+. ....++++..+|.|++||.......... .....+...+....| .+ ++.+|++|+.||+|+||+
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~----s~-dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL----SS-DGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE----CS-SSSEEEEECTTSCEEEEE
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE----CC-CCCEEEEeeCCCCEEEEe
Confidence 36667665 4567889999999999996543322111 111122333343333 34 688999999999999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+..
T Consensus 373 ~~~ 375 (380)
T 3iz6_a 373 FSG 375 (380)
T ss_dssp CCS
T ss_pred cCC
Confidence 853
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=264.51 Aligned_cols=276 Identities=19% Similarity=0.349 Sum_probs=217.3
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|+|||+++++++.+ ++||+.+++....+. .+...+. +.+.+++ +++.|+.|++||+
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc------cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 455678899999999999886544 899998876654322 1222233 3344444 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.++ +.+..+.+|...|.+++|+|++++|++|+.|++|+|||+++++.+..+..|...|.+++|+|++++|++++.||
T Consensus 95 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 95 SSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 977 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE----EEEecCC
Q 003106 703 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW----CVNAMNR 777 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~----~~~~~~~ 777 (847)
.|++||+++ +..+..+ ..+...|.+++|+|++. +|++++.|+.|++||+++++++..+..+..... .....+.
T Consensus 172 ~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 172 LCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CEEEEETTT-CCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred cEEEEECCC-CceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 999999998 5555555 45677899999999988 455899999999999999999999987765322 2233456
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe--CCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC--GDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs--~DG~V~vW~~g 845 (847)
..++++..++.|++|+...... ...+. .+. ..++.+.+++ ++.+|++++ .||+|++|+..
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~--~~~~~-~h~----~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEI--VQKLQ-GHT----DVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCE--EEEEC-CCS----SCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCchh--hhhhh-ccC----CcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 6788999999999999764322 22111 112 2344455555 577888886 69999999975
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=268.92 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ ..+..+..|...|.+++|++++++|++|+.|++|+|||+.+++.+..+.+|...|++|+|+
T Consensus 30 s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 106 (304)
T 2ynn_A 30 TTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106 (304)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 5778999999999877 5677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~~ 768 (847)
|++++|++|+.|++|+|||+++.......+.+|...|++++|+|++..+|++|+.|++|++||++++.+...+.. +...
T Consensus 107 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~ 186 (304)
T 2ynn_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (304)
T ss_dssp SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc
Confidence 999999999999999999999855667788999999999999996556788999999999999998877666654 4456
Q ss_pred EEEEEec---CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM---NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~---~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+. +...+++++.++.|++||...... ...+. .+...+....| .+ ++.+|++|+.||+|++|++.
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~-~h~~~v~~~~~----~p-~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLE-GHMSNVSFAVF----HP-TLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEE----CS-SSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeC-CCCCCEEEEEE----CC-CCCEEEEEcCCCeEEEEECC
Confidence 6666654 345789999999999999764322 11111 12223333333 34 57799999999999999987
Q ss_pred CC
Q 003106 846 TY 847 (847)
Q Consensus 846 ty 847 (847)
++
T Consensus 259 ~~ 260 (304)
T 2ynn_A 259 TY 260 (304)
T ss_dssp TC
T ss_pred CC
Confidence 64
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=268.99 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=208.6
Q ss_pred CCCCCcceEEE-----ec-CCCeEeecCCC---eEEeCCCCchhhccccc-cccCCCCCceEE-eeecCC----CCCCCC
Q 003106 551 SGTTSKPLMMF-----GT-DGAGTLTSPSN---QLWDDKDLELRADMDRL-VEDGSLDDNVES-FLSHDD----TDPRDA 615 (847)
Q Consensus 551 ~~~~~~~~v~~-----s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~-~~~g~~d~~v~~-~~s~d~----t~~~d~ 615 (847)
.|...+..++| ++ ||..+++++.+ ++||+.+.+........ .....+...|.. .+.+++ +++.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 35556788888 66 89988887655 89999765432111111 111123333433 344444 678899
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~~ 692 (847)
+|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+.. .....+. .|...|.+++|+|++
T Consensus 99 ~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 99 TLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp EEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCC
T ss_pred cEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecccc
Confidence 9999999977 56778899999999999999999999999999999999984 3333333 788999999999987
Q ss_pred ----------CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEE
Q 003106 693 ----------PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV 761 (847)
Q Consensus 693 ----------~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~ 761 (847)
.+|++++.|++|+|||.+ ......+.+|...|++++|+|++. +|++|+.||.|+|||++. ......
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEE
T ss_pred ccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCccccee
Confidence 789999999999999954 567788899999999999999987 566999999999999954 444444
Q ss_pred EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccc------cCCCCccccccccccccCCCcEEEEEeC
Q 003106 762 FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGW------YGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
+. +...+.++.+.....++++..++.+++|+.........+.... .........++.+.+.+ ++.+|++|+.
T Consensus 252 ~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~ 329 (343)
T 2xzm_R 252 FD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFT 329 (343)
T ss_dssp EE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEET
T ss_pred ec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecC
Confidence 43 3455888888877777777788899999965332211111110 00001122234444445 6788999999
Q ss_pred CCeEEEEEccC
Q 003106 836 DSSLSSFIAGT 846 (847)
Q Consensus 836 DG~V~vW~~gt 846 (847)
||+|++|++.+
T Consensus 330 Dg~v~~w~~~~ 340 (343)
T 2xzm_R 330 DGVIRTFSFET 340 (343)
T ss_dssp TSEEEEEEEEE
T ss_pred CceEEEEEEEc
Confidence 99999999754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=278.78 Aligned_cols=224 Identities=21% Similarity=0.352 Sum_probs=193.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|++|++||+.++ +...++.+|.+.|++|+|++++++|++|+.|++|+|||+.+++++.++.+|...|++++|+
T Consensus 125 s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 125 SASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe
Confidence 5678999999999987 4567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|++++|++|+.|++|++||+++ +.++.++.+|...|.+++|++++. +|++|+.|++|++||+++++++..+..|...|
T Consensus 202 p~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp SSSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCC-CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 9999999999999999999998 788999999999999999999987 66799999999999999999999999999999
Q ss_pred EEEEecC---------------------CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 770 WCVNAMN---------------------RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 770 ~~~~~~~---------------------~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
.++.+.. ...+++++.++.|++||....... ....+ +...+.. +.+.+ ++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~--h~~~v~~----v~~~~-~g~ 351 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVG--HDNWVRG----VLFHS-GGK 351 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-EEEEC--CSSCEEE----EEECS-SSS
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEEC--CCCcEEE----EEEcC-CCC
Confidence 9998765 457899999999999997643221 11111 2222333 33334 678
Q ss_pred EEEEEeCCCeEEEEEccC
Q 003106 829 CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~gt 846 (847)
+|++|+.||+|+||++.+
T Consensus 352 ~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 352 FILSCADDKTLRVWDYKN 369 (410)
T ss_dssp CEEEEETTTEEEEECCTT
T ss_pred EEEEEeCCCeEEEEECCC
Confidence 899999999999999854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=261.67 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=179.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~f 688 (847)
.|++|++||+... ..+.+.++.+|.+.|++|+|++ ++++|++|+.|++|+|||+++++ .+..+.+|...|.+|+|
T Consensus 29 ~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~ 107 (297)
T 2pm7_B 29 SDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW 107 (297)
T ss_dssp TTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE
T ss_pred CCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe
Confidence 3455666666543 3345677889999999999986 48999999999999999998764 56778889999999999
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCCc-eEEEeccCCCCeEEEEEecCC------------CeEEEEEeCCCcEEEEEC
Q 003106 689 SPS--MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNK------------DDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 689 sp~--~~~Lasgs~Dg~V~iWD~~~~~~-~~~~~~~h~~~V~sl~fsp~g------------~~ll~s~s~Dg~V~iWD~ 753 (847)
+|+ +.+|++++.|++|++||+++... ....+.+|...|.+++|+|++ ..+|++|+.|++|+|||+
T Consensus 108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 998 88999999999999999987432 246778999999999999973 247789999999999999
Q ss_pred CCCc----eEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 754 NNGS----CTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 754 ~~~~----~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
++++ ++..+.+|...|.++.+... ..+.+++.++.|++|+.............. .......+|.+.+.+
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~- 264 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWSL- 264 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS--SSCCSSCEEEEEECS-
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee--cccCCCcEEEEEECC-
Confidence 8876 66788899999999998765 578899999999999865322111110000 011123455555555
Q ss_pred CCcEEEEEeCCCeEEEEEcc
Q 003106 826 RECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~g 845 (847)
++.+|++|+.||+|+||+..
T Consensus 265 ~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSCCEEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEEEC
Confidence 67889999999999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=266.06 Aligned_cols=287 Identities=12% Similarity=0.053 Sum_probs=217.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCc--hhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLE--LRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~--~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
+...+..++|++||+++++++.+ ++||+.+++ ....+. .+...+. +.+.+++ +++.|+.|++||
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE------CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec------CCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 44567899999999999887544 899998875 222221 1223333 3344444 577899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEE-EccCCCCeEEEEEcCCCCEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTN-LEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~-l~~h~~~I~~v~fsp~~~~Las 697 (847)
+.++ .......+..|...|.+++|++++++|++|+.|+.|++||++.+.. ... ...|...|++++|+|++++|++
T Consensus 81 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 81 LKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EETT-EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCC-eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 9877 4455556678999999999999999999999999999999987762 333 3678999999999999999999
Q ss_pred EeCCCcEEEEECC-----------------CCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 698 SSFDKTVRVWDAD-----------------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 698 gs~Dg~V~iWD~~-----------------~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
++.||.|++||++ ..+..+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++.
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeE
Confidence 9999999999964 12577888889999999999999987 56699999999999999999999
Q ss_pred EEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCc--ccceeeecc-----------------------c---------
Q 003106 761 VFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLF--INANIFCGL-----------------------G--------- 806 (847)
Q Consensus 761 ~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~--~~~~~~~~~-----------------------~--------- 806 (847)
.+..+...+.++.+.....++....++.|.+|+... ..-...... +
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 999998889999887666666666999999999654 110000000 0
Q ss_pred ccCCCCccccccccccccCCC---cEEEEEeCCCeEEEEEccC
Q 003106 807 WYGSDEIPAPSWKVSCRSCRE---CCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~---~~l~sGs~DG~V~vW~~gt 846 (847)
..-.......++.+.+.+.++ .+|++|+.||+|++|++.+
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000001122334444444455 8999999999999999753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=292.94 Aligned_cols=289 Identities=20% Similarity=0.252 Sum_probs=211.3
Q ss_pred CCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
.|...+.+++|++++ ..+++++.+ +|||+.+............. .+...|. +.+++++ +++.|++|++||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 456678899999876 456666554 89999865432111111111 2333343 3345555 688899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEEEEcCCC--CEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSM--PRLA 696 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v~fsp~~--~~La 696 (847)
+.++ +.+..+.+|...|++|+|+|++++|++|+.|++|+|||+......... .+|...|.|++|+|++ ..|+
T Consensus 459 ~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 459 LAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp TTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred CCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9977 567788999999999999999999999999999999998754333322 4688999999999986 5899
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
+|+.|++|+|||+++ ..++.++.+|.+.|++|+|+|++. +|++|+.||+|+|||+++++++..+..+ ..+.++.+..
T Consensus 536 s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 612 (694)
T 3dm0_A 536 SASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP 612 (694)
T ss_dssp EEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECS
T ss_pred EEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcC
Confidence 999999999999998 778889999999999999999987 6669999999999999999988877654 4577888777
Q ss_pred CCEEEEEcCCCcEEEEcCCcccceeeeccccc------------CCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWY------------GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
...++....++.|++||............... ........+..+.+.+ ++.+|++|+.||+|+||++
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEec
Confidence 77777777778899999654322111110000 0000001122233334 6889999999999999999
Q ss_pred cCC
Q 003106 845 GTY 847 (847)
Q Consensus 845 gty 847 (847)
+.|
T Consensus 692 ~~~ 694 (694)
T 3dm0_A 692 GRY 694 (694)
T ss_dssp ---
T ss_pred cCC
Confidence 876
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=286.95 Aligned_cols=287 Identities=19% Similarity=0.188 Sum_probs=218.4
Q ss_pred cCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----CCCCCCcEEEE
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t~~~d~~v~vw 620 (847)
.+.........++|+|||+.++++... +|||+.++.....+. + +...| ++.+++++ +++.|++|++|
T Consensus 13 ~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-----~-h~~~v~~~~~spdg~~lasg~~d~~v~lW 86 (611)
T 1nr0_A 13 LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-----E-HSHQTTVAKTSPSGYYCASGDVHGNVRIW 86 (611)
T ss_dssp CCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-----C-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-----C-CCCceEEEEECCCCcEEEEEeCCCCEEEe
Confidence 334444556778999999988876544 789998765544321 1 22333 34466766 67889999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EE
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RL 695 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~L 695 (847)
|+.++ .......+.+|.+.|.+++|+||+++|++++.+ ++|++|| +++.+.++.+|...|++|+|+|++. .|
T Consensus 87 d~~~~-~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 87 DTTQT-THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp ESSST-TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred ECCCC-cceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence 99765 234456788999999999999999999999875 3677776 5667778899999999999999987 69
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-------eCCce
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------VESFC 768 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-------~~~~~ 768 (847)
++|+.|++|++||.++ ..++.++.+|...|++|+|+|++. +|++++.|++|+|||+++++++..+. +|...
T Consensus 164 ~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 9999999999999987 778889999999999999999987 66799999999999999999998884 68889
Q ss_pred EEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc-----------c------cCC-------------------C
Q 003106 769 CWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG-----------W------YGS-------------------D 811 (847)
Q Consensus 769 v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-----------~------~~~-------------------~ 811 (847)
|.++.+.. ...+.+++.++.|++||............+ + ... .
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 99998875 457889999999999996532211100000 0 000 0
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.....++.+.+.+ ++.+|++|+.||+|++|++.+
T Consensus 322 gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 322 GHNKAITALSSSA-DGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Confidence 0112233444444 688999999999999999753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=262.77 Aligned_cols=234 Identities=23% Similarity=0.307 Sum_probs=201.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+...+..+.|++++..+++++.+ ++||+.+++....+.. + ......+.+.+++ +++.++.+++||+.
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~----~-~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA----G-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----C-TTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC----C-CccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 455667889999999998887655 8999998876544321 1 1111223344444 67789999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ +....+..|...|.+++|+||+++|++|+.||.|+|||+.+++.+.++.+|...|++|+|+|++++|++|+.|++
T Consensus 153 ~~---~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 153 SG---KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp TC---SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred CC---ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 77 456677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|+|||+++ ...+.++.+|...|.+++|+|++. +|++++.|++|+|||+++++++..+..|...|.++.+.. ...+++
T Consensus 230 i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 230 IKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp EEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 99999998 778889999999999999999987 566999999999999999999999999999999998875 457889
Q ss_pred EcCCCcEEEEcC
Q 003106 783 KLDAGDIQISDS 794 (847)
Q Consensus 783 ~~~~g~i~i~d~ 794 (847)
+..++.|++||.
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 999999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=275.24 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=209.8
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCceee
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~~ 629 (847)
..++|+|||+++++++.+ ++||+.+.+....+.. .......++.+++ +++.|+.|++||+.++ +
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~ 130 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR------ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---L 130 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS------CCEEEEEEECSSSCEEEEEETTSCEEEECTTSC---E
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec------CCceEEEEEecCCCEEEEEECCCCEEEEeCCCc---c
Confidence 467999999998887644 8999988765443221 1112222344444 5778999999999866 5
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
....+.+|...|++++|+|++++|++|+.|++|+|||+++++.+..+.+|...|++++|+|++++|++++.|++|++||+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecc---CCCCeEEEEE---------------------ecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-
Q 003106 710 DNPGYSLRTFMG---HSASVMSLDF---------------------HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV- 764 (847)
Q Consensus 710 ~~~~~~~~~~~~---h~~~V~sl~f---------------------sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~- 764 (847)
++ +..+..+.. |...|.+++| +|++. +|++++.||.|++||+++++.+..+..
T Consensus 211 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 211 GT-GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp TT-TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred CC-CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 98 677777764 4445555555 67765 667999999999999999988777754
Q ss_pred CCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 765 ESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 765 ~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+...+.++.+.... .++++..+|.|++||.......+.... ..+...+....|. ++.+|++|+.||+|++|
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~------~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-INEGTPINNVYFA------AGALFVSSGFDTSIKLD 361 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-ESTTSCEEEEEEE------TTEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-ccCCCCceEEEeC------CCCEEEEecCCccEEEE
Confidence 66778888877543 789999999999999764332111111 1122223332222 46799999999999999
Q ss_pred Ecc
Q 003106 843 IAG 845 (847)
Q Consensus 843 ~~g 845 (847)
++.
T Consensus 362 ~~~ 364 (420)
T 3vl1_A 362 IIS 364 (420)
T ss_dssp EEC
T ss_pred ecc
Confidence 975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=273.52 Aligned_cols=234 Identities=11% Similarity=0.072 Sum_probs=179.4
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCC--chhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEecc
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDL--ELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~--~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~ 623 (847)
..+..++|+|||+++++++.+ +|||+.++ .....+. .+...|.. .+.+++ +++.|+.|++||+.
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS------DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC------CCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe------cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 367889999999999887544 89999876 3332221 12333333 344444 67789999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcc-CCCCeEEEEEcCCCCEEEEEe
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEE-HSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~-h~~~I~~v~fsp~~~~Lasgs 699 (847)
++..+.....+.+|...|++++|+|++++|++|+.|+.|+|||+++++ ....+.. |...|++++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 874456777888999999999999999999999999999999999876 4777887 999999999999999999999
Q ss_pred CCCcEEEEECCCC-----------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce----
Q 003106 700 FDKTVRVWDADNP-----------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---- 758 (847)
Q Consensus 700 ~Dg~V~iWD~~~~-----------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---- 758 (847)
.|++|++||++.. +.++..+ +|...|++++|+|++. +|++++.||+|+|||++++++
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCccee
Confidence 9999999998631 3345566 8999999999999988 556999999999999999987
Q ss_pred EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 759 TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+..+..|...+.++.+.....++....++.+.+|+..
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7888899999999988766655555556666677643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=260.36 Aligned_cols=228 Identities=19% Similarity=0.264 Sum_probs=177.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV-RA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~ 680 (847)
+++.|++|++||+..+ .+..+..+ .+ |...|++|+|+|++++|++|+.|++|+|||++. .+.+..+.+|.
T Consensus 29 s~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 107 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE 107 (330)
T ss_dssp EEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred EEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence 5677899999999875 34455555 44 999999999999999999999999999999852 45677889999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~- 756 (847)
..|++|+|+|++++|++|+.|++|+|||++..+ .++..+.+|...|.+|+|+|++. +|++|+.|++|+|||++++
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC
Confidence 999999999999999999999999999995422 46778899999999999999987 6679999999999999876
Q ss_pred -ceEEEEeeCCceEEEEEecCC---CEEEEEcCCCcEEEEcCCcccc------eeeecccccCCCCccccccccccccCC
Q 003106 757 -SCTRVFKVESFCCWCVNAMNR---PCLWDKLDAGDIQISDSLFINA------NIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 757 -~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~~g~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
+++..+.+|...|+++.+... ..+++++.++.|++|+...... .........+...+. .+.+. .
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~v~~s--~ 260 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY----NVAWG--F 260 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE----EEEEC--T
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE----EEEEc--C
Confidence 688899999999999988764 4688999999999998542210 011111111222333 33333 2
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++|+.||+|+||+..
T Consensus 261 ~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 261 NGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp TSCEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCEEEEEEcC
Confidence 4589999999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=263.45 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=189.6
Q ss_pred CCcceEEEecCCCeEeecCC--CeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 554 TSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
..+..++|++|+..+.++.+ .+|||+.+++......... ..+...|.+ .+++++ +++.|++|++||+.++
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc--cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 34678999999765544333 3899999887554322211 123344443 355565 6889999999999987
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDK 702 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~-~~~Lasgs~Dg 702 (847)
+.+.++.+|.+.|++++|++++ .+|++|+.|++|+|||+++++.+..+. .|...|++++|+|+ +++|++|+.||
T Consensus 160 --~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 --VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp --EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred --cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 6788899999999999999987 478999999999999999999888775 45667999999996 56889999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC--CCEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN--RPCL 780 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~--~~~l 780 (847)
+|+|||+++ +.++.++.+|...|++|+|+|++..+|++|+.|++|+|||+++++++ .+.+|...|.++.+.. ...+
T Consensus 238 ~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 238 TVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp EEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEE
T ss_pred cEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEE
Confidence 999999998 78889999999999999999999878889999999999999998765 5678999999999864 3456
Q ss_pred EEEcCCCcEEEEcCC
Q 003106 781 WDKLDAGDIQISDSL 795 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~ 795 (847)
.+++.|+.|++|+..
T Consensus 316 as~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEETTSCEEEEECC
T ss_pred EEEcCCCeEEEEECC
Confidence 688999999999865
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-27 Score=253.87 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=216.8
Q ss_pred CCCCCcceEEEecC-CCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTD-GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~d-G~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd 621 (847)
.|...+..++|+|+ +.++++++.+ +|||+.+.+...........+ +...|. +.+.+++ +++.|+.|++|+
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 46678899999998 5677776554 899998765433222111112 233343 3355555 678899999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCCC--CEEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSM--PRLATS 698 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~~--~~Lasg 698 (847)
.... ........+...+.++.+++++++|++|+.|+.|++||+..... ...+.+|...|.+++|++++ .+++++
T Consensus 115 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 115 LTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp TTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred eccc---ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 9876 55666778889999999999999999999999999999886544 34456899999999999875 468899
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~ 778 (847)
+.|++|++||+++ ...+..+.+|...|++|+|+|++. +|++|+.||+|+|||+++++++..+..+. .+.++.+....
T Consensus 192 ~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~ 268 (340)
T 4aow_A 192 GWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNR 268 (340)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEEEECSSS
T ss_pred cCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCc-eEEeeecCCCC
Confidence 9999999999998 788899999999999999999987 66699999999999999999998887654 57777777777
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeeccc--ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLG--WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++++..++.|++|+............. ..........++.+.+.+ ++.+|++|+.||+|+||++.+
T Consensus 269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC
T ss_pred ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCC
Confidence 8888889999999996532221111100 001111122333444444 678999999999999999854
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=250.73 Aligned_cols=281 Identities=13% Similarity=0.149 Sum_probs=219.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.+...+..++|++||+++++++.. ++||+.++.....+..+... .....+. +.+.+++ +++.|+.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeeccccc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 355678899999999999887733 88999887654433322211 1223333 3344444 56778999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
++ .......+..|...|.+++|++++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.||.
T Consensus 128 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 128 AP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CC-CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 87 44567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|++||+++ +..+..+ .|...|.+++|+|++. +|++++.|+.|++||+++++. ..+..+...+.++.+.. ...+++
T Consensus 207 i~~~d~~~-~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 207 VRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEETTT-TEEEEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CceEeee-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEE
Confidence 99999998 6666665 4778899999999987 556888999999999998875 45677888888888774 457888
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+..++.|.+|+......... ..+...+....|+ + ++.+|++++.||.|++|++-+
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~----~~~~~~v~~~~~s----~-~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDIS----V-DDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EETTSEEEEEETTTCCEEEE----EECSSCEEEEEEC----T-TSCEEEEEETTSCEEEEEEEC
T ss_pred ecCCCcEEEEECCCCeEEEE----ecCCCcEEEEEEC----C-CCCEEEEecCCCeEEEEEEeC
Confidence 99999999999764332211 1122333333333 3 678999999999999999753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=258.20 Aligned_cols=234 Identities=17% Similarity=0.220 Sum_probs=193.6
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
...+..++|+|+|.++++++.+ ++||+.+.+......... ..+...+. +.+..++ +++.|++|++||+.++
T Consensus 97 ~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred CccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC
Confidence 3456788999999999887655 899998754221111111 11222333 2233343 6778999999999977
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+++++.+.++.+|...|++|+|+|++++|++|+.||+|+
T Consensus 175 ---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 175 ---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp ---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEE
Q 003106 706 VWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 782 (847)
|||+++ +..+..+.. +...|++++|+|++. +|++|+.|+.|+|||+.+++++..+.+|...|.++.+... ..+++
T Consensus 252 iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 252 LFDLRA-DQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEECCC-CcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 999998 566666542 335799999999987 5669999999999999999999999999999999988754 56889
Q ss_pred EcCCCcEEEEc
Q 003106 783 KLDAGDIQISD 793 (847)
Q Consensus 783 ~~~~g~i~i~d 793 (847)
++.++.|++|+
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-27 Score=277.55 Aligned_cols=276 Identities=16% Similarity=0.218 Sum_probs=204.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCC----CCCcEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDP----RDAGGR 618 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~----~d~~v~ 618 (847)
.|...+..++|+|||+++++++.+ +|||+.+++..... .+ ..+...|. +.+++++ +++ .++.|+
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TI---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EE---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-ee---cccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 355568899999999999987655 89999755322110 01 11222333 3344444 111 224677
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEE
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las 697 (847)
+||. + .....+.+|...|++++|+|++. +|++|+.|++|+|||..+++++.++.+|...|++|+|+|++++|++
T Consensus 133 ~wd~--~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 133 LFDT--G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp ETTT--C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EeeC--C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence 7774 3 34556889999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCCceEEEec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE--------
Q 003106 698 SSFDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------- 762 (847)
Q Consensus 698 gs~Dg~V~iWD~~~~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-------- 762 (847)
|+.|++|+|||+.+ +.++..+. +|.+.|++|+|+|++. +|++++.|++|+|||+++++++..+
T Consensus 208 ~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 208 TGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 99999999999998 67777774 7999999999999987 5669999999999999988766544
Q ss_pred -----------------------------------eeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeeccc
Q 003106 763 -----------------------------------KVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLG 806 (847)
Q Consensus 763 -----------------------------------~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 806 (847)
.+|...|.++.+.. ...++++..++.|++|+....... ....
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~--~~~~ 363 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFP 363 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSS
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--eecc
Confidence 34556677777654 457788888999999986533221 1111
Q ss_pred ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 807 WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..+...+ +.+.+. .+..+++++.|++|++|+++
T Consensus 364 ~~h~~~v----~~~~~s--~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 364 DVHATMI----TGIKTT--SKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp CSCSSCE----EEEEEC--TTSCEEEEETTTEEEEECSS
T ss_pred cCCcceE----EEEEEC--CCCcEEEEEcCCceEEeecC
Confidence 1122222 223322 24578999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=262.46 Aligned_cols=284 Identities=15% Similarity=0.135 Sum_probs=212.8
Q ss_pred CCCCCCcceEEEecC---CC--eEeecCCC--eEEeCCCCchhhccccccccCCCCCce-EEeeecC----C----CCCC
Q 003106 550 HSGTTSKPLMMFGTD---GA--GTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHD----D----TDPR 613 (847)
Q Consensus 550 ~~~~~~~~~v~~s~d---G~--~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d----~----t~~~ 613 (847)
..|...+..++|+|+ +. .+++++.+ ++||+.+++....+..+.... .+..+ .+.+.++ + +++.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD-ADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSC-TTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccC-CCCcEEEEEeccCCCCCCCEEEEecC
Confidence 356678899999984 44 33333333 899999876655544332211 22223 2334444 2 5778
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~~I~~v~fs 689 (847)
|+.|++||+.++ +.+..+.+|...|++++|+| ++++|++|+.||.|+|||+++++.+..+ ..|...|++++|+
T Consensus 94 dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 94 RGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp TCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999876 56777889999999999999 9999999999999999999999999888 7899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceE----------------------------EEeccCCCCeEEEEEecCCCeEEEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSL----------------------------RTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~----------------------------~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
|++++|++++.||.|++||+++ +..+ ....+|...|.+++|+ +. +|++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~ 246 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILS 246 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEE
T ss_pred CCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEE
Confidence 9999999999999999999987 3322 2334499999999999 44 6779
Q ss_pred EeCCCcEEEEECCCCce--------------EEEEeeCCceEEEEEecC---CCEEEEEcCCCcEEEEcCCcccce--ee
Q 003106 742 CDGDGEIRYWSINNGSC--------------TRVFKVESFCCWCVNAMN---RPCLWDKLDAGDIQISDSLFINAN--IF 802 (847)
Q Consensus 742 ~s~Dg~V~iWD~~~~~~--------------~~~~~~~~~~v~~~~~~~---~~~l~~~~~~g~i~i~d~~~~~~~--~~ 802 (847)
++.|+.|++||++++.. +..+..+...+.++.+.. ...++++..+|.|++|+....... ..
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 99999999999988754 777777877777776553 567888999999999996643221 11
Q ss_pred ecc-cccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 803 CGL-GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 803 ~~~-~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
... .+.+...+....|+ + ++.+|++|+.||.|++|++-+
T Consensus 327 ~~~~~~~~~~~v~~~~~s----~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFS----R-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCTTCCSCEEEEEEC----T-TSSEEEEEETTSEEEEEEC--
T ss_pred eEEcccccCCceEEEEeC----C-CCCeEEEEeCCCEEEEEEecC
Confidence 111 11113334444444 4 688999999999999999753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-27 Score=259.75 Aligned_cols=279 Identities=16% Similarity=0.141 Sum_probs=203.5
Q ss_pred CCCCCcceEEEecCC-CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeec-CC----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDG-AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSH-DD----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG-~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~-d~----t~~~d~~v~vw 620 (847)
.+...+..++|+++| +++++++.+ +|||+.+++....+. ...+...|.. .+.+ ++ +++.|+.|++|
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC----CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee----cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 345678899999999 777776544 899999876544321 1113333333 2344 22 67889999999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEe
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSS 699 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs 699 (847)
|+.+. ....+.....|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+|...|++|+|+|+++ +|++|+
T Consensus 147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp ETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred ECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence 99864 44444444556689999999999999999999999999999 5788889999999999999999999 899999
Q ss_pred CCCcEEEEECCCC---CceEEEeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc--------
Q 003106 700 FDKTVRVWDADNP---GYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF-------- 767 (847)
Q Consensus 700 ~Dg~V~iWD~~~~---~~~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~-------- 767 (847)
.|++|+|||+++. ..++..+ +|...|++++|+| ++. +|++++.|+.|+|||+++++++..+..+..
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP 302 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence 9999999999862 3345555 7999999999999 876 566999999999999999988777765431
Q ss_pred ---------eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc-ccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 768 ---------CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG-WYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 768 ---------~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
.+.++.+..+..+ +++.++.|++||...... ...+. ..+...+....|+ + ++.+|++|+ ||
T Consensus 303 ~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s----~-~g~~l~s~s-d~ 373 (383)
T 3ei3_B 303 IKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFS----P-TGDVLASGM-GF 373 (383)
T ss_dssp CCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEEC----T-TSSEEEEEE-TT
T ss_pred eEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEe----c-CccEEEEec-CC
Confidence 1222333333333 667899999999654332 22221 1122223332344 3 678899997 99
Q ss_pred eEEEEEccC
Q 003106 838 SLSSFIAGT 846 (847)
Q Consensus 838 ~V~vW~~gt 846 (847)
.|+||++.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=259.63 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=178.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~v~ 687 (847)
+.|++|++||+.++ ....+..+.+|.+.|++|+|++ ++++|++|+.|++|+|||++++ ..+..+.+|...|++|+
T Consensus 32 s~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 32 SSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp ETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred eCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 34566777777665 3345677899999999999986 4899999999999999999876 45677889999999999
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCC----------------CeEEEEEeCCCc
Q 003106 688 FSPS--MPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNK----------------DDLICSCDGDGE 747 (847)
Q Consensus 688 fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g----------------~~ll~s~s~Dg~ 747 (847)
|+|+ +.+|++|+.|++|+|||++..... ...+.+|...|.+++|+|+. ..+|++|+.|++
T Consensus 111 ~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 111 WAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190 (316)
T ss_dssp ECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB
T ss_pred ECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCe
Confidence 9998 789999999999999999873222 34567899999999999973 236779999999
Q ss_pred EEEEECCCC---ceEEEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCcccccc
Q 003106 748 IRYWSINNG---SCTRVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSW 818 (847)
Q Consensus 748 V~iWD~~~~---~~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w 818 (847)
|+|||++.+ +++..+.+|...|.++.+... ..+++++.++.|++|+.......... .....+ ...+|
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~----~~~v~ 266 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF----NDVVW 266 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC----SSCEE
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC----CCcEE
Confidence 999999865 467788899999999998754 57889999999999986532110000 000011 23455
Q ss_pred ccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 819 KVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+ ++.+|++|+.||+|+||+..
T Consensus 267 ~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 555555 67889999999999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=265.90 Aligned_cols=286 Identities=14% Similarity=0.203 Sum_probs=217.1
Q ss_pred CCCCcceEEEecCCCeEeecCC---CeEEeCCCCchhh-ccccccccCCCCCce-EEeeecC-C----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPS---NQLWDDKDLELRA-DMDRLVEDGSLDDNV-ESFLSHD-D----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~-~~~~~~~~g~~d~~v-~~~~s~d-~----t~~~d~~v~vwd 621 (847)
+...+..++|++||.++++++. .++||+.+..... ....+. .+...| ++.+.++ + +++.|+.|++||
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---CSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---CCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 4556789999999999888644 4899998732111 111111 122223 2334444 3 678899999999
Q ss_pred ccCCc------eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccC------CCCeEEEEE
Q 003106 622 VSQGF------SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRF 688 (847)
Q Consensus 622 ~~~~~------~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h------~~~I~~v~f 688 (847)
+.++. .......+..|...|.+++|+|+ +.+|++|+.|+.|+|||+++++.+..+..| ...|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99874 22333445789999999999998 789999999999999999999999998876 788999999
Q ss_pred cCCC-CEEEEEeCCC---cEEEEECCCCCceEEEec-cCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 689 SPSM-PRLATSSFDK---TVRVWDADNPGYSLRTFM-GHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 689 sp~~-~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
+|++ .+|++++.|+ .|++||+++....+..+. +|...|++++|+| ++. +|++++.||.|++||+++++++..+
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceee
Confidence 9997 5899999998 999999998556777888 8999999999999 555 6779999999999999999999999
Q ss_pred eeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccceeee----------------ccc------------c----c
Q 003106 763 KVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINANIFC----------------GLG------------W----Y 808 (847)
Q Consensus 763 ~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~----------------~~~------------~----~ 808 (847)
..|...+.++.+... ..++++..++.|++|+.......... ..+ + .
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 999999988888764 57889999999999996533221110 000 0 0
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
....+....|+ .++.+|++|+.||+|+||++.+
T Consensus 382 ~~~~~~~~~~s-----~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 382 YGEPSPAAHWA-----FGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp TCCCSCCCEEE-----TTTEEECBCTTSSCBCCBCCCC
T ss_pred ccCCccceEEe-----eCCeEEEEeCCCCeEEEEEecc
Confidence 01111122222 3688999999999999999865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=245.85 Aligned_cols=227 Identities=21% Similarity=0.278 Sum_probs=185.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.+++||+.++ +....+.+|...|.+++|+|++++|++|+.|+.|+|||+++++.+..+.+|...|.+++|+
T Consensus 40 s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 116 (312)
T 4ery_A 40 SSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116 (312)
T ss_dssp EEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 5677899999999876 4566788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESFC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~~ 768 (847)
|++++|++|+.|++|++||+++ +..+..+..|...|.+++|+|++. +|++++.||.|++||+++++++..+.. +...
T Consensus 117 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 117 PQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp SSSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred CCCCEEEEEeCCCcEEEEECCC-CEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 9999999999999999999998 778889999999999999999987 566999999999999999998877754 4456
Q ss_pred EEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 769 CWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 769 v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.++.+.. ...++++..++.|++||....... ....++.. ..... + ..+...++.+|++|+.||.|++|++.+
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~--~~~~~-~-~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-KTYTGHKN--EKYCI-F-ANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-EEECSSCC--SSSCC-C-EEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EEEEecCC--ceEEE-E-EEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 77777654 457888999999999997643221 11111111 11111 1 111233578999999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=254.70 Aligned_cols=230 Identities=20% Similarity=0.310 Sum_probs=183.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.++..........+|...|++++|+|++++|++|+.|++|+|||+.++ +++.++.+|...|++|+
T Consensus 33 s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 6778999999999877222223334789999999999999999999999999999998866 46778999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~ 763 (847)
|+|++++|++|+.|++|+|||+++.. .++..+.+|...|.+++|+|++. +|++++.|++|++||++++. ++..+.
T Consensus 113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 99999999999999999999998733 34677889999999999999987 56699999999999999875 557888
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccce-------------eeecccccCCCCccccccccccccCCCcE
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINAN-------------IFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
+|...|.++.+.. ...+++++.++.|++|+....... ........+ ...++++.+.+ ++..
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~~-~~~~ 266 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH----SRTIYDIAWCQ-LTGA 266 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC----SSCEEEEEECT-TTCC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCC----CCcEEEEEEec-CCCE
Confidence 9999999999875 457889999999999984211100 001111111 22344455444 5678
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
|++++.|+.|++|++.
T Consensus 267 l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 267 LATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEEeCCCeEEEEEeC
Confidence 9999999999999864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=267.53 Aligned_cols=267 Identities=23% Similarity=0.342 Sum_probs=212.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||..+++.+.+ ++||.....+.. + ..+...+. +.+.+++ ++..++.+++||..
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~----~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~ 374 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT----L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE----E---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE----E---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence 44567789999999998876544 899987654322 1 11222232 3345554 56788999999964
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
. +.+..+.+|...|++++|+||+++|++++.|+.|+|||. +++.+..+.+|...|++++|+|++++|++++.|++
T Consensus 375 ~----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 375 G----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp C----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred C----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 3 467778899999999999999999999999999999995 57888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|++||+. +..+..+.+|...|++++|+|+++ +|++++.|++|+|||. +++++..+.+|...|.++.+.. ...+++
T Consensus 450 v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 525 (577)
T 2ymu_A 450 VKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525 (577)
T ss_dssp EEEEETT--SCEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEEEECC--CCEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE
Confidence 9999975 577888999999999999999987 5669999999999995 6889999999999999998875 456788
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+..++.|++||... ..+..+. .+.. .++.+.+.+ ++.+|+|++.||+|++||
T Consensus 526 ~~~dg~v~lwd~~~---~~~~~~~-~h~~----~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 526 ASDDKTVKLWNRNG---QLLQTLT-GHSS----SVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EETTSEEEEECTTS---CEEEEEE-CCSS----CEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EECcCEEEEEeCCC---CEEEEEc-CCCC----CEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 99999999999532 2222111 1222 334444444 688899999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=246.03 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=209.0
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|++||+++++++.+ ++||+.+++....+.. +...|. +.+.+++ +++.|+.|++||+
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG------HTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 456678999999999998886544 8999998876554321 222333 2334444 5778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEccCCC--CeE
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLK-----------SKTNLEEHSS--LIT 684 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~-----------~~~~l~~h~~--~I~ 684 (847)
.++ +.+..+. |...|.+++|+|++++|++++.+ +.|++||+.... .+..+..|.. .|.
T Consensus 104 ~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 104 SNG---QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTC---CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCC---cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 987 4445555 88999999999999999999999 999999987543 3445556666 899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+++|+|++++|++++.||.|++||+++....+..+..|...|.+++|+|++. +|++++.|+.|++||+++++++..+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999999986678888999999999999999987 55689999999999999999998888
Q ss_pred CCceEEEEEec-CCCEEEEEcCCC--------------cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 765 ESFCCWCVNAM-NRPCLWDKLDAG--------------DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 765 ~~~~v~~~~~~-~~~~l~~~~~~g--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
+...+.++.+. ....++.+..++ .+.+|+........ .. ..+...+....|+ + ++.+
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~-~~~~~~v~~~~~s----~-~~~~ 329 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--RV-QGHFGPLNTVAIS----P-QGTS 329 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--EE-ECCSSCEEEEEEC----T-TSSE
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--he-ecccCcEEEEEEC----C-CCCE
Confidence 44445555554 445666666666 67888755332211 11 1122333333343 4 6789
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
|++|+.||.|+||++.
T Consensus 330 l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEcCCCeEEEEECc
Confidence 9999999999999974
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=260.69 Aligned_cols=280 Identities=10% Similarity=0.156 Sum_probs=213.9
Q ss_pred CcceEEEecCCC-eEeec----------C---CCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCC
Q 003106 555 SKPLMMFGTDGA-GTLTS----------P---SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDA 615 (847)
Q Consensus 555 ~~~~v~~s~dG~-~~~~~----------~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~ 615 (847)
.+..++|+|||+ +++++ + ..+|||+.++.....+..+ .+...+. +.+.+++ +++.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL----QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC----CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE----ecCCceEEEEECCCCCeEEEEccCC
Confidence 345778999998 55555 2 3489999987643222111 1233333 3344454 567899
Q ss_pred cEEEEeccCCc-eeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc------eeEE---EccCCCCeE
Q 003106 616 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK------SKTN---LEEHSSLIT 684 (847)
Q Consensus 616 ~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~------~~~~---l~~h~~~I~ 684 (847)
.|++||+.+.. ..+.+..+.+|...|++++|+|+ +++|++|+.|+.|+|||+.+++ .... +..|...|+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 99999998731 12477788999999999999998 8999999999999999999876 3332 367999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEeccC------CCCeEEEEEecCCCeEEEEEeCCC---cEEEEECC
Q 003106 685 DVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGH------SASVMSLDFHPNKDDLICSCDGDG---EIRYWSIN 754 (847)
Q Consensus 685 ~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------~~~V~sl~fsp~g~~ll~s~s~Dg---~V~iWD~~ 754 (847)
+++|+|+ +.+|++++.||.|++||+++ +..+..+..| ...|.+++|+|++..+|++++.|+ .|++||++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTT-TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999999 78999999999999999998 7777887766 788999999999877888999998 99999999
Q ss_pred CC-ceEEEEe-eCCceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 755 NG-SCTRVFK-VESFCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 755 ~~-~~~~~~~-~~~~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
++ .++..+. .|...+.++.+. +...++++..++.|++|+...... ...+. .+...+.. +.+.+....+|
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~-~~~~~v~~----~~~s~~~~~~l 321 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFP-ARGNWCFK----TKFAPEAPDLF 321 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEE-CSSSCCCC----EEECTTCTTEE
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeec-CCCCceEE----EEECCCCCCEE
Confidence 86 6777887 888899999886 467888999999999999664322 11111 12223333 44445334899
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++++.||.|+||++.+
T Consensus 322 ~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQN 337 (416)
T ss_dssp EECCSSSEEEEEESCC
T ss_pred EEEecCCcEEEEEccC
Confidence 9999999999999854
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=252.98 Aligned_cols=282 Identities=18% Similarity=0.226 Sum_probs=211.2
Q ss_pred CCCCcceEEEecCCC-eEeecCCC---eEEeC----CCCch------hhccccccc----cCCCCCceE-EeeecCC---
Q 003106 552 GTTSKPLMMFGTDGA-GTLTSPSN---QLWDD----KDLEL------RADMDRLVE----DGSLDDNVE-SFLSHDD--- 609 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~-~~~~~~~~---~iWD~----~~~~~------~~~~~~~~~----~g~~d~~v~-~~~s~d~--- 609 (847)
+...+..++|+|||+ ++++++.+ ++||+ .+++. ...+..... ...+...+. +.+.+++
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 345678999999999 88876654 89999 77762 222111110 011232333 3345554
Q ss_pred -CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--------------
Q 003106 610 -TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-------------- 674 (847)
Q Consensus 610 -t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-------------- 674 (847)
+++.|+.|++||. ++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 124 ~~~~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEeCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 6678999999993 33 5677788999999999999999999999999999999997765443
Q ss_pred ------------------------------------------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 675 ------------------------------------------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 675 ------------------------------------------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
.+..|...|++++|+|++++|++++.|+.|++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 278 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN- 278 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-
Confidence 3446778899999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEE
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQI 791 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i 791 (847)
+..+..+.+|...|.+++|+|++ +|++++.|+.|++||+++++++..+..+...+.++.+.. ...++++..++.|.+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 67788888999999999999998 667999999999999999999999999988999888764 457888899999999
Q ss_pred EcCCcccce------------------eeecccccCCC-CccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 792 SDSLFINAN------------------IFCGLGWYGSD-EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 792 ~d~~~~~~~------------------~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|+....... ....+...... .+....|+ + ++.+|++|+.||.|++|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----C-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----T-TSSEEEEEESSSCCEEEECC
T ss_pred EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----C-CCceEEEEecCceEEEEeec
Confidence 996533200 11111111111 33343343 4 57799999999999999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=256.83 Aligned_cols=276 Identities=10% Similarity=0.053 Sum_probs=206.3
Q ss_pred cceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
.....|++||+.+++++.+ ++||+.++.....+. .+...|.. .+.+++ +++.|+.|++||+.++
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-- 171 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-- 171 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 3455789999998886544 899998776543321 13333333 344444 6788999999999977
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc---CCCCeEE-------------------
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITD------------------- 685 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h~~~I~~------------------- 685 (847)
+.+..+.+|...|++++|+|++++|++|+.|++|+|||+++++.+..+.. |...|.+
T Consensus 172 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 172 -SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp -CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred -cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 45677889999999999999999999999999999999999999988875 3344444
Q ss_pred --EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEE
Q 003106 686 --VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF 762 (847)
Q Consensus 686 --v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~ 762 (847)
++|+|++++|++|+.||.|+|||+++.........+|...|++++|+|++..+|++++.||.|++||++++++ +..+
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 330 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh
Confidence 4557899999999999999999999844444444568899999999999886778999999999999999754 7777
Q ss_pred ee-CCceEEEEEecCCCEEEEEcCCCcEEEEcCCccccee-eec-----ccccCCCCccccccccccccCCCc---EEEE
Q 003106 763 KV-ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANI-FCG-----LGWYGSDEIPAPSWKVSCRSCREC---CLYT 832 (847)
Q Consensus 763 ~~-~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~-----~~~~~~~~~~~~~w~~~~~~~~~~---~l~s 832 (847)
.. +...+.++.+.+...+++++.++.|++|+........ ... ....+...+....|. + ++. .+++
T Consensus 331 ~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~-~~~~~g~l~a 405 (420)
T 3vl1_A 331 LINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYV----S-DDESNGEVLE 405 (420)
T ss_dssp EESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEE----C-CSSSSCEEEE
T ss_pred hccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEc----c-CCCCcceEEE
Confidence 76 6677888877777788999999999999954321110 000 001122233333444 3 333 6777
Q ss_pred EeCCCeEEEEEcc
Q 003106 833 GCGDSSLSSFIAG 845 (847)
Q Consensus 833 Gs~DG~V~vW~~g 845 (847)
.+.+|.+.+|++.
T Consensus 406 ~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 406 VGKNNFCALYNLS 418 (420)
T ss_dssp EETTTEEEEEESC
T ss_pred EcCCceEEEEecc
Confidence 7788999999975
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=255.32 Aligned_cols=237 Identities=17% Similarity=0.153 Sum_probs=188.0
Q ss_pred CCCCcceEEEecCCCeEeecCC--CeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPS--NQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
+...+..++|+||++.++++.. .+|||+.+++...... +. ...+...|.+ .+.+++ +++.|+.|++||+.+
T Consensus 93 ~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~-~~-~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK-FA-KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp CSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC-EE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe-ec-cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 3445788999999987766543 3899998876543221 11 1123334433 355555 678899999999997
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCC-CEEEEEeC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSM-PRLATSSF 700 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~-~~Lasgs~ 700 (847)
+ +.+..+.+|...|++++|++++. +|++++.|++|+|||+++++.+..+. .|...|++|+|+|++ .+|++|+.
T Consensus 171 ~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 171 K---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp T---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred C---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 7 67788899999999999999875 78999999999999999888766553 567789999999985 57899999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec--CCC
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM--NRP 778 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~--~~~ 778 (847)
|+.|+|||+++ +.++.++.+|...|++|+|+|++..+|++|+.|++|+|||+++++++..+ +|...|.++++. +..
T Consensus 248 d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 248 TGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp SSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTT
T ss_pred ccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCC
Confidence 99999999998 77889999999999999999998888889999999999999999887665 688899999986 456
Q ss_pred EEEEEcCCCcEEEEcCC
Q 003106 779 CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~ 795 (847)
.+++++.|+.|++|+..
T Consensus 326 ~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCeEEEEECC
Confidence 88899999999999954
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=248.72 Aligned_cols=235 Identities=17% Similarity=0.221 Sum_probs=191.3
Q ss_pred CCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
..+..++|+|+|..+++++.+ ++|++.................+...+. +.+.+++ +++.|++|++||+.++
T Consensus 107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~ 186 (354)
T 2pbi_B 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG 186 (354)
T ss_dssp SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence 356789999999999998766 7899865422111111111111223333 2334443 6788999999999977
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 626 FSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+.+..+.+|...|.+++|++ ++++|++|+.||+|++||+++++++..+.+|...|++|+|+|++++|++|+.|++
T Consensus 187 ---~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 187 ---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp ---CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 56778899999999999988 5789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEE
Q 003106 704 VRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCL 780 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 780 (847)
|+|||++. ...+..+..+ ...+.+++|+|++. +|++|+.|++|+|||+.+++++..+.+|...|.++.+.. ...+
T Consensus 264 v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 264 CRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp EEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCE
T ss_pred EEEEECCC-CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEE
Confidence 99999997 5556666433 35789999999987 566999999999999999999999999999999998875 4578
Q ss_pred EEEcCCCcEEEEc
Q 003106 781 WDKLDAGDIQISD 793 (847)
Q Consensus 781 ~~~~~~g~i~i~d 793 (847)
.+++.++.|++|+
T Consensus 342 ~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 342 CSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSEEEEEC
T ss_pred EEEcCCCCEEecC
Confidence 8999999999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=239.73 Aligned_cols=273 Identities=13% Similarity=0.128 Sum_probs=205.4
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
.+..++|+|||+.+++.... .+|+..... . ......+...+. +.+.+++ +++ |+.+++||+.++.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--R----QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--E----EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcc--c----cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 45688999999998766533 223222111 1 111111222332 3344444 344 9999999999875
Q ss_pred eeeEeEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 627 SFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 627 ~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
....+..+. +|...|.+++|+|++++|++|+.|+.|++||+++++ ....+..|...|++++|+|++++|++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 555555555 899999999999999999999999999999999877 6677888999999999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLW 781 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 781 (847)
.|++||+++ +..+..+.+|...|.+++|+|++. +|++++.||.|++||+++++.+..+. +...+.++.+. +...++
T Consensus 164 ~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 164 NIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp CEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEE
T ss_pred cEEEEeCCC-CceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEE
Confidence 999999998 788889999999999999999987 55689999999999999999888875 44556777765 456788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+..++.|.+|+....... ... .+...+....| .+ ++.+|++++.||.|++|++.+
T Consensus 241 ~~~~~~~i~~~~~~~~~~~--~~~--~~~~~v~~~~~----~~-~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKY--QLH--LHESCVLSLKF----AY-CGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEETTSCEEEEETTSSCEE--EEC--CCSSCEEEEEE----CT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEcCCCcEEEEECCCCCeE--EEc--CCccceeEEEE----CC-CCCEEEEecCCCcEEEEECCC
Confidence 8889999999997643321 111 12222333333 34 678999999999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-25 Score=246.74 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=206.8
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
....+.|++ ..+++.+ ..++||+.+++....+.. .....|.. .+.+++ ++..|+.|++||+.++
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~- 166 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ- 166 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-
Confidence 344566664 3444433 338999998876543221 12233332 344444 5677999999999876
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|...|.+++| ++++|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 167 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 167 --TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp --CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 567778899999999999 56799999999999999999 5677888999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s--~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
+||+++ +..+..+.+|...|.+++|+|++..++++++ .|+.|++||+++++++..+.. ...+.++.+.. ...++.
T Consensus 243 iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 243 IWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEE
T ss_pred EccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEE
Confidence 999998 7788889999999999999999988998876 799999999999999988874 44577777654 445555
Q ss_pred --EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 --KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 --~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+..++.|.+|+............ ..+...+....|+ + ++.+|++|+.||.|++|++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s----~-dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALS----P-DGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEEC----T-TSSEEEEECTTSEEEEEECCC
T ss_pred EeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEEC----C-CCCEEEEEeCCCcEEEEECCC
Confidence 44799999999653222211111 1122333333443 4 688999999999999999854
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=263.25 Aligned_cols=280 Identities=16% Similarity=0.146 Sum_probs=192.4
Q ss_pred CCCCcceEEEecC-CCeEeecC---CCeEEeCCCCchhhccccccccCCCCCceEE-eee-cCC----CCCCCCcEEEEe
Q 003106 552 GTTSKPLMMFGTD-GAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLS-HDD----TDPRDAGGRGMD 621 (847)
Q Consensus 552 ~~~~~~~v~~s~d-G~~~~~~~---~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s-~d~----t~~~d~~v~vwd 621 (847)
+...+.+++|+|. +..+++++ .++|||+.+.+....+. ...+...|.. .+. .++ +++.|++|++||
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3445789999995 55666654 34899998775433221 1123333333 233 233 688999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC-EEEEEeC
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSF 700 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~-~Lasgs~ 700 (847)
+.++ ....+.....+...|.+++|++++++|++|+.||.|+|||++ ++.+..+.+|...|++|+|+|++. +|++|+.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 194 FKGN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp TTSC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred ccCC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 9876 344444444556678999999999999999999999999987 456678889999999999999986 6789999
Q ss_pred CCcEEEEECCCCCc--eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce-------EEE
Q 003106 701 DKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC-------CWC 771 (847)
Q Consensus 701 Dg~V~iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~-------v~~ 771 (847)
|++|+|||+++... .+....+|...|++|+|+|++. +|++++.||+|+|||++++.+...+..+... +.+
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999987322 2233467999999999999988 5569999999999999999887776554321 111
Q ss_pred ----------EE--ecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccc-ccccccccCCCcEEEEEeCCCe
Q 003106 772 ----------VN--AMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAP-SWKVSCRSCRECCLYTGCGDSS 838 (847)
Q Consensus 772 ----------~~--~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~l~sGs~DG~ 838 (847)
+. .+....++.+..++.|++|+..... ........+...+... .|+ + ++.+|++|+ |+.
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fs----p-dg~~lasg~-d~~ 422 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFN----P-MGDTLASAM-GYH 422 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEEC----T-TSSCEEEEC-SSE
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEEC----C-CCCEEEEEc-CCc
Confidence 11 1222334444456679999865332 2222211122222222 232 3 577888876 889
Q ss_pred EEEEEccC
Q 003106 839 LSSFIAGT 846 (847)
Q Consensus 839 V~vW~~gt 846 (847)
|+||++..
T Consensus 423 i~iW~~~~ 430 (435)
T 4e54_B 423 ILIWSQQE 430 (435)
T ss_dssp EEECCCC-
T ss_pred EEEEECCc
Confidence 99999753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=250.33 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=205.0
Q ss_pred CCCCcceEEEecCCCeEeecC-------CCeEEeCCCCchhhccccccccCCCCCceE-EeeecC---C----CCCCCCc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSP-------SNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD---D----TDPRDAG 616 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~-------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d---~----t~~~d~~ 616 (847)
+...+..++|+|+|..+++.+ ..+|||+.+++....... + +...|. +.+.++ + +++.|+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----E-KAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----E-ESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----c-ccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 566788999999997665433 238999998765432110 1 122222 233333 2 5678999
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCc-eeEEEccCCC----CeEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHF------SSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSS----LITD 685 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~f------spdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~----~I~~ 685 (847)
|++||+.++. ..+..+.+|...|.+++| ++++++|++|+.||.|+|||+.+++ .+..+..|.. .|++
T Consensus 92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 9999999763 256778899999999955 6799999999999999999999876 7788876655 7999
Q ss_pred EE----EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCce
Q 003106 686 VR----FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 686 v~----fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp---~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
++ |++++++|++++.||.|++||+++ +.. .....|...|.+++|+| ++. +|++++.||.|++||++++++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEET
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCc
Confidence 98 788999999999999999999998 444 44467889999999999 766 566899999999999998766
Q ss_pred EEEEe-----eCCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccce-----------------eeecccccCCCCcc
Q 003106 759 TRVFK-----VESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINAN-----------------IFCGLGWYGSDEIP 814 (847)
Q Consensus 759 ~~~~~-----~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~~ 814 (847)
+..+. .+...+.++.+.... .++++..+|.|++|+....... ..... ..+...+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v- 324 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPI- 324 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCE-
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCCCe-
Confidence 55544 888899999887654 5889999999999995432211 11111 1122233
Q ss_pred ccccccccccCCCcEEE-EEeCCCeEEEEEccC
Q 003106 815 APSWKVSCRSCRECCLY-TGCGDSSLSSFIAGT 846 (847)
Q Consensus 815 ~~~w~~~~~~~~~~~l~-sGs~DG~V~vW~~gt 846 (847)
+.+.+.+ ++.+|+ +|+.||.|+||++.+
T Consensus 325 ---~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 325 ---SSLDWSP-DKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp ---EEEEECS-SSTTEEEEEETTSEEEEEEECC
T ss_pred ---eEEEEcC-CCCeEEEEecCCCcEEEEECCC
Confidence 3344445 445555 899999999999875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=241.14 Aligned_cols=224 Identities=19% Similarity=0.243 Sum_probs=185.8
Q ss_pred CCCCCCcEEEEeccCCc--eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.... ...++..+.+|...|.+++|++|+++|++|+.|++|+|||+.+++.+..+.+|...|++|+
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 67889999999987531 2346778999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-----eEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-----DLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-----~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
|+|++.+|++|+.|++|+|||++. .++..+.+|...|.+++|.|... .+|++++.|++|++||++++++...+
T Consensus 115 ~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 115 IDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 999999999999999999999974 67888999999999999998633 36779999999999999999999999
Q ss_pred eeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEE
Q 003106 763 KVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSS 841 (847)
Q Consensus 763 ~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~v 841 (847)
.+|...|.++.+... ..++++..++.|++||....... .... .... ++.+.+.+ ++.+|++++.+ .|++
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~~~~----v~~~~~sp-~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLS--AQDE----VFSLAFSP-NRYWLAAATAT-GIKV 262 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE--EEEE--CCSC----EEEEEECS-SSSEEEEEETT-EEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEec--CCCc----EEEEEEcC-CCCEEEEEcCC-CcEE
Confidence 999999999988754 57889999999999997643221 1111 1222 33444444 56777777755 5999
Q ss_pred EEcc
Q 003106 842 FIAG 845 (847)
Q Consensus 842 W~~g 845 (847)
|++.
T Consensus 263 ~~~~ 266 (319)
T 3frx_A 263 FSLD 266 (319)
T ss_dssp EEET
T ss_pred EEeC
Confidence 9864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=251.10 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=209.1
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEE
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANS 633 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~ 633 (847)
++.++|.++++++.+ ++||+.+++....+. .+...|......+. +++.|+.|++||+.++ +.+..
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~ 194 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG---ECIHT 194 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc------CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC---cEEEE
Confidence 567788888876655 899999887654432 13333443322233 6788999999999977 67778
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~ 713 (847)
+.+|...|.+++|+ +++|++|+.||+|++||+.+++.+..+.+|...|++++| ++++|++|+.||.|++||+++ +
T Consensus 195 ~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~ 269 (445)
T 2ovr_B 195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-E 269 (445)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-T
T ss_pred ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-C
Confidence 89999999999995 678999999999999999999999999999999999999 688999999999999999998 7
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
.++..+.+|...|.+++| ++. ++++++.||.|++||+++++++..+..+...+.++.+.+ ..++++..+|.|.+||
T Consensus 270 ~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWD 345 (445)
T ss_dssp EEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEE
T ss_pred cEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEE
Confidence 888999999999999999 444 567999999999999999999999999999898888754 5888999999999999
Q ss_pred CCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 794 SLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
...............+...+....| ++.+|++|+.||.|++|++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTT
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCC
Confidence 7543221111111112222222222 367999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=259.22 Aligned_cols=292 Identities=11% Similarity=0.108 Sum_probs=208.5
Q ss_pred CCCCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEE
Q 003106 550 HSGTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGM 620 (847)
Q Consensus 550 ~~~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vw 620 (847)
..|...+..++|++ ||.++++++.+ +|||+.+.+........... .+...|.. .+.+++ +++.|+.|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 34566889999999 99999887765 89998762211111111111 13333433 334444 67889999999
Q ss_pred ecc---CCceee-----EeEEee--c--CCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeE
Q 003106 621 DVS---QGFSFK-----EANSVR--A--STSKVICCH--FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLIT 684 (847)
Q Consensus 621 d~~---~~~~~~-----~~~~l~--~--h~~~V~~l~--fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~ 684 (847)
|+. ++.... .+..+. . +...+.++. +++++.+|++|+.|+.|++||+++++.+..+.+ |...|+
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence 995 332111 222222 2 677788888 668999999999999999999999999999988 899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-cCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+++|+|++++|++|+.||+|+|||+++ +.++..+. .|...|++++|+|. ...+|++++.||.|+|||+++++++.
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999998 77788775 78889999977763 23477799999999999999999998
Q ss_pred EEeeC--------------------------CceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc--------
Q 003106 761 VFKVE--------------------------SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG-------- 806 (847)
Q Consensus 761 ~~~~~--------------------------~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~-------- 806 (847)
.+..+ ...|.++.+.+...++++..++.|++|+.............
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 377 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI 377 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEE
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEE
Confidence 88754 23466677776678899999999999996543322111100
Q ss_pred ----------------c------cCCCCccccccccccccC-CCcEEEEEeCCCeEEEEE
Q 003106 807 ----------------W------YGSDEIPAPSWKVSCRSC-RECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 807 ----------------~------~~~~~~~~~~w~~~~~~~-~~~~l~sGs~DG~V~vW~ 843 (847)
. .........+..+.+.+. +..+|++|+.||.|+||.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 378 PTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0 000001122233333332 367999999999999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=245.08 Aligned_cols=228 Identities=18% Similarity=0.189 Sum_probs=180.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~f 688 (847)
.|+.|++||+... ..+.+..+.+|...|++++|+++ +++|++|+.||.|+|||+.+++ .+..+..|...|++++|
T Consensus 31 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 31 SDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109 (379)
T ss_dssp TTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred CCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence 3556777777654 55677888999999999999987 9999999999999999999887 77788889999999999
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEec-------------CCCeEEEEEeCCCcEEEEE
Q 003106 689 SPS--MPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHP-------------NKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 689 sp~--~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp-------------~g~~ll~s~s~Dg~V~iWD 752 (847)
+|+ +.+|++++.|+.|++||+++.. .....+.+|...|++++|+| ++. +|++++.||.|++||
T Consensus 110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK 188 (379)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEE
T ss_pred CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEE
Confidence 999 9999999999999999998742 34556778999999999999 455 677999999999999
Q ss_pred CCCCc----eEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 753 INNGS----CTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 753 ~~~~~----~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
++++. ++..+..|...|.++.+... ..++++..++.|++|+............... ......++.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--EKFPDVLWRASWSL 266 (379)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS--SCCSSCEEEEEECS
T ss_pred ecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc--ccCCCcEEEEEEcC
Confidence 98764 45677788889999988764 5788899999999999664322111111111 11122234444444
Q ss_pred CCCcEEEEEeCCCeEEEEEcc
Q 003106 825 CRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~g 845 (847)
++.+|++++.||.|++|++.
T Consensus 267 -~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 267 -SGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -SSCCEEEEESSSSEEEEEEE
T ss_pred -CCCEEEEecCCCcEEEEeCC
Confidence 67789999999999999975
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=249.57 Aligned_cols=230 Identities=20% Similarity=0.291 Sum_probs=188.4
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
.+..++|+|||+++++++.+ +|||+.+++....+. .+...|.. .+.+++ +++.|++|++||+.++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~- 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG- 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-
Confidence 46789999999999886654 899999876544322 12333332 344444 6788999999999987
Q ss_pred eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE-------ccCCCCeEEEEEcCCCCEEEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l-------~~h~~~I~~v~fsp~~~~Lasg 698 (847)
+....+. +...|.+++|+| ++++|++|+.|++|+|||+++++.+..+ .+|...|++|+|+|++++|++|
T Consensus 198 --~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 198 --QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp --EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 3344443 667899999999 9999999999999999999999888776 5799999999999999999999
Q ss_pred eCCCcEEEEECCCC-----------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 699 SFDKTVRVWDADNP-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 699 s~Dg~V~iWD~~~~-----------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.|++|+|||+++. +.+...+.+|...|.+++|++++. +|++|+.|+.|++||+++++++..+.+|..
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence 99999999999752 235667889999999999999987 566999999999999999999999999999
Q ss_pred eEEEEEecC-------CCEEEEEcCCCcEEEEcCC
Q 003106 768 CCWCVNAMN-------RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 768 ~v~~~~~~~-------~~~l~~~~~~g~i~i~d~~ 795 (847)
.|.++.+.. ...+++++.++.|++|+..
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999998764 4578899999999999843
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=250.83 Aligned_cols=263 Identities=17% Similarity=0.246 Sum_probs=208.3
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC---CCCCCCcEEEEeccCCceeeEeE
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD---TDPRDAGGRGMDVSQGFSFKEAN 632 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~---t~~~d~~v~vwd~~~~~~~~~~~ 632 (847)
++..++.++++++.+ ++||+.+++....+. .+...|... +.+++ +++.|++|++||+.++ +.+.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~ 197 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS------GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG---CCTH 197 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT---EEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe------CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC---cEEE
Confidence 344567777776544 899999887655432 233334333 33443 7788999999999977 5777
Q ss_pred EeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCce-----------------------eEEEccCCCCeEEEE
Q 003106 633 SVRASTSKVICCHFS--SDGKLLATGGHDKKAVLWHTDTLKS-----------------------KTNLEEHSSLITDVR 687 (847)
Q Consensus 633 ~l~~h~~~V~~l~fs--pdg~~Lasgs~Dg~V~vwd~~~~~~-----------------------~~~l~~h~~~I~~v~ 687 (847)
.+.+|...|.+++|+ +++++|++|+.|++|++||+.++.. +..+.+|...|.++
T Consensus 198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV- 276 (464)
T ss_dssp EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-
T ss_pred EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-
Confidence 889999999999999 5789999999999999999987652 55677899999887
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
++++++|++|+.||+|++||+++ +.++..+.+|...|++++|+|++. +|++|+.||.|++||+++++++..+..|..
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~ 353 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTA 353 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred -cCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Confidence 56688999999999999999998 788999999999999999999988 556999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.++.+. ...+++++.+|.|++|+........... .........|. .++.+|++|+ ||.|++|++.+
T Consensus 354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 354 LVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTT
T ss_pred cEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCC
Confidence 99999886 5788999999999999976433222211 12222222232 2577888888 99999999854
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=249.32 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=211.0
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecC--------C---CCCCC
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD--------D---TDPRD 614 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d--------~---t~~~d 614 (847)
..|...+..++|++ ..+++++.+ ++||+.+.+....+........+...|. +.+.++ . +++.|
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35666788999988 666665544 8999998872211111111112222232 223332 2 56779
Q ss_pred CcEEEEeccCCce--eeEeEEeecC-----CCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CceeE--
Q 003106 615 AGGRGMDVSQGFS--FKEANSVRAS-----TSKVICCHFS----SDGKL-LATGGHDKKAVLWHTDT------LKSKT-- 674 (847)
Q Consensus 615 ~~v~vwd~~~~~~--~~~~~~l~~h-----~~~V~~l~fs----pdg~~-Lasgs~Dg~V~vwd~~~------~~~~~-- 674 (847)
+.|++||+.++.. ...+..+..| ...|.+++|+ +++++ |++|+.||.|++||+.+ ++.+.
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 9999999987632 1115667778 5999999999 99999 99999999999999998 66666
Q ss_pred ---EE-------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc---C---CCCeEEEEEecCCCeE
Q 003106 675 ---NL-------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---H---SASVMSLDFHPNKDDL 738 (847)
Q Consensus 675 ---~l-------~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~---h---~~~V~sl~fsp~g~~l 738 (847)
.+ ..|...|++++|+|++ +|++++.||.|++||+++ +..+..+.. | ...|.+++|+|++. +
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~ 247 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGS-L 247 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTT-E
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCC-E
Confidence 77 4488999999999999 999999999999999998 788888888 9 99999999999987 5
Q ss_pred EEEEeCC---CcEEEEECCCCceEEEEee-------------CCceEEEEEec-CCCEEEEEcCCCcEEEEcCCccccee
Q 003106 739 ICSCDGD---GEIRYWSINNGSCTRVFKV-------------ESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANI 801 (847)
Q Consensus 739 l~s~s~D---g~V~iWD~~~~~~~~~~~~-------------~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~ 801 (847)
|++++.| |.|++||+++++++..+.. +...+.++.+. +...++++..++.|++|+........
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 5688889 9999999999999999998 88889999886 45678889999999999975432222
Q ss_pred eecccc---cC---------------CCCccccccccccccCCC----------cEEEEEeCCCeEEEEEccC
Q 003106 802 FCGLGW---YG---------------SDEIPAPSWKVSCRSCRE----------CCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 802 ~~~~~~---~~---------------~~~~~~~~w~~~~~~~~~----------~~l~sGs~DG~V~vW~~gt 846 (847)
...... .+ ...+.. +.+.+ ++ .+|++|+.||.|+||++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~----~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----VKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE----EEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEecccCcccchhhhhccccccccccCCceeE----EEecc-ccccccccccccceEEEecCCCcEEEEEcCC
Confidence 111000 11 233333 34334 33 7999999999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=235.45 Aligned_cols=271 Identities=17% Similarity=0.268 Sum_probs=214.5
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++| +++..+++++.+ ++||+.+......+.. +...+. +.+.+++ +++.|+.+++|++
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 45567888999 899988887655 8999987765443221 122232 3344444 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
......+.+..+.+|...|.+++| ++++|++|+.|+.|++|| .++.+..+..|...|.+++|++ ++++|++++.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 887666778888999999999999 678999999999999999 6788888999999999999998 89999999999
Q ss_pred CcEEEEECCCCCceEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 702 KTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
|.|++||. ...+..+.. |...|.+++|+|++. +++++.||.|++||+++++++..+..+...+.++.+.....+
T Consensus 165 ~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l 239 (313)
T 3odt_A 165 KTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDI 239 (313)
T ss_dssp SCEEEEET---TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCE
T ss_pred CCEEEEec---CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCE
Confidence 99999994 456677776 999999999999976 569999999999999999999999999999999998877789
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+++..++.|++|+........ ... .+... ++.+.+.+ ++. +++++.||.|++|++.+
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~--~~~-~~~~~----i~~~~~~~-~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQ--VIT-LPAIS----IWSVDCMS-NGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEE--EEE-CSSSC----EEEEEECT-TSC-EEEEETTSCEEEEESCG
T ss_pred EEEecCCEEEEEECCCCceeE--EEe-ccCce----EEEEEEcc-CCC-EEEEeCCCcEEEEeCCC
Confidence 999999999999965432211 111 11222 33344334 334 77899999999999854
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=251.90 Aligned_cols=262 Identities=19% Similarity=0.319 Sum_probs=205.4
Q ss_pred eEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEe
Q 003106 558 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEA 631 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~ 631 (847)
..++..||..+++++.+ ++||+.+++....+. .+...|.++...+. +++.|+.|++||+.++ +.+
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~---~~~ 206 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT------GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG---EML 206 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC------CCSSCEEEEECCSSEEEEEETTSCEEEEESSSC---CEE
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc------CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC---cEE
Confidence 44666688888876544 899999887654432 13334444333222 6788999999999987 567
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~---~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
..+.+|...|.+++|+ +.+|++|+.||+|++||+.++..+ ..+.+|...|++++| ++++|++|+.||+|++||
T Consensus 207 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 7888999999999997 459999999999999999987655 677899999999999 688999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCc
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
+++ +..+..+.+|...|.++.|+. . ++++|+.||.|++||+++++++..+..|...+.++.+ +...+++++.+|.
T Consensus 283 ~~~-~~~~~~~~~~~~~v~~~~~~~--~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TST-CEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGK 357 (435)
T ss_dssp TTT-CCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred CCc-CcEEEEEcCCCCcEEEEEeCC--C-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCc
Confidence 998 788999999999999999963 3 6779999999999999999999999999999999998 6678999999999
Q ss_pred EEEEcCCcccce-------eeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 789 IQISDSLFINAN-------IFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 789 i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
|++||....... ...... .+...+....| ++.+|++|+.||+|++|++.
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE-------CSSCEEECCSSSEEEEEC--
T ss_pred EEEEECCCCCCccccccchheeecc-CCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECC
Confidence 999995322110 111111 12222222222 46789999999999999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=244.36 Aligned_cols=272 Identities=15% Similarity=0.228 Sum_probs=209.3
Q ss_pred cceEEEecCCCeEee--cCCCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~--~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
...+.||+++ .+++ ++.++|||+.++++...+. .......|. +-+++++ +++.|+.|++||+.++
T Consensus 108 ~~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEE----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---
T ss_pred ceeEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEE----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---
Confidence 4678999865 3433 3345999999987654322 122333343 3355665 6889999999999977
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+.+..+.+|...|.+++|+ +.+|++|+.|+.|++||... ...+.++.+|...|.++.|++++++|++++.|+.|+||
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 6778889999999999885 67999999999999999885 45667889999999999999999999999999999999
Q ss_pred ECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEE--eCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSC--DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 708 D~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~--s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
|+.+.. ..+..+..|...|.+++|+|++..+++++ +.|++|+|||+++++++..+..+...+..+.......++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 337 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence 998632 24567788999999999999988888765 4799999999999999999988877666665556666655
Q ss_pred Ec--CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 783 KL--DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 783 ~~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+. .++.|++|+...... +..+. .+... ++.+.+.+ ++.+|+||+.||+|+||++.
T Consensus 338 ~sg~~d~~I~iwd~~~~~~--v~~l~-gH~~~----V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAK--VAELK-GHTSR----VLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EECTTTCCEEEEETTTCCE--EEEEC-CCSSC----EEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EEecCCCEEEEEECCCCcE--EEEEc-CCCCC----EEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 43 789999999754322 22211 12223 34444444 67899999999999999974
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=246.96 Aligned_cols=283 Identities=10% Similarity=0.001 Sum_probs=196.2
Q ss_pred CCCcceEEEecCCCeEeecCC----------CeEEeCCCCchhhc--ccccc--ccCCCCCceEEe---------eecCC
Q 003106 553 TTSKPLMMFGTDGAGTLTSPS----------NQLWDDKDLELRAD--MDRLV--EDGSLDDNVESF---------LSHDD 609 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~----------~~iWD~~~~~~~~~--~~~~~--~~g~~d~~v~~~---------~s~d~ 609 (847)
+-++.+++|+|||+.+++++. .++|++........ +.... .-...+..+.++ -..+.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 346889999999999988642 37899876543211 11100 000111112111 11111
Q ss_pred -----CCCCCCcEEEEeccCCc-eeeEeEEe-----ecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEE
Q 003106 610 -----TDPRDAGGRGMDVSQGF-SFKEANSV-----RASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 610 -----t~~~d~~v~vwd~~~~~-~~~~~~~l-----~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l 676 (847)
++..|+.+|+|++.+.. ..+.+... ..+...+++|+|+|||++|++++ .|++|+|||+++++.+..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 46678999999987652 22333222 24556799999999999987554 7899999999999999888
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCCC----cEEEE
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYW 751 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg----~V~iW 751 (847)
. |...|++|+|+|+|++|++++.| .+++|+..+..... ....+|...|.+|+|+|++.. +++++.|+ .|++|
T Consensus 174 ~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 E-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKI 250 (365)
T ss_dssp E-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEE
T ss_pred C-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeec
Confidence 5 77889999999999999999855 56667666633333 334578889999999999875 45777676 68899
Q ss_pred ECCCCce----EEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 752 SINNGSC----TRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 752 D~~~~~~----~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|+..+.. ...+..+...|.++++..+ ..+.+++.++.|++||..... .+..+...+...++...|+ + +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fS----p-d 323 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTIS----P-D 323 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEEC----T-T
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEEC----C-C
Confidence 9987653 3456778888999988754 467789999999999976432 2222222233444444444 4 7
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++||.|++||||++-
T Consensus 324 g~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 324 STYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SCEEEEEETTSEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEEcC
Confidence 8999999999999999983
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=252.73 Aligned_cols=231 Identities=18% Similarity=0.250 Sum_probs=185.4
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCCCC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSL 682 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~ 682 (847)
+++.|++|++||+.++ +....+..|...|.+++|+|++++|++|+.|+.|+|||+.+. .....+.+|.+.
T Consensus 83 s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 83 SASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159 (380)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred EEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc
Confidence 6778999999999877 567788999999999999999999999999999999998743 244567899999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-C
Q 003106 683 ITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N 755 (847)
Q Consensus 683 I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~ 755 (847)
|.++.|+|++ ..|++|+.|++|++||+++ +..+..+ .+|...|.+++|++....+|++|+.|++|++||++ .
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999974 5799999999999999998 6777766 67999999999988555688899999999999998 5
Q ss_pred CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 756 GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+.++..+.+|...|.++.+.. ...+++++.++.|++||.......................++.+.+.+ ++.+|++|+
T Consensus 239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~ 317 (380)
T 3iz6_a 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGY 317 (380)
T ss_dssp CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEEC
T ss_pred CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEE
Confidence 578899999999999998875 457889999999999997643322211111111111111223333344 688999999
Q ss_pred CCCeEEEEEcc
Q 003106 835 GDSSLSSFIAG 845 (847)
Q Consensus 835 ~DG~V~vW~~g 845 (847)
.||.|++||+.
T Consensus 318 ~dg~i~vwd~~ 328 (380)
T 3iz6_a 318 SNGDCYVWDTL 328 (380)
T ss_dssp TTSCEEEEETT
T ss_pred CCCCEEEEECC
Confidence 99999999964
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=238.80 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=179.6
Q ss_pred CCCCCCcEEEEeccCCc----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGF----SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~ 685 (847)
+++.|++|++||+.... .......+.+|...|++++|+|++.+|++|+.|++|+|||+++++.+..+.+|...|++
T Consensus 44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 123 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS 123 (343)
T ss_dssp EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence 67789999999987642 23456778999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCC---------eEEEEEeCCCcEEEEEC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKD---------DLICSCDGDGEIRYWSI 753 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~---------~ll~s~s~Dg~V~iWD~ 753 (847)
|+|+|++++|++++.|++|+|||+.. .....+. +|...|.+++|+|++. .+|++++.|+.|++||
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd- 200 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN- 200 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-
Confidence 99999999999999999999999984 3333333 7889999999999872 4678999999999999
Q ss_pred CCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE
Q 003106 754 NNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832 (847)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s 832 (847)
..+.+...+..|...|.++.+.. ...+++++.++.|++||.......... .. .... ++.+.+.+ ++.+++
T Consensus 201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~--~~~~----v~~v~~sp-~~~~la- 271 (343)
T 2xzm_R 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE-FD--AGST----INQIAFNP-KLQWVA- 271 (343)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE-EE--CSSC----EEEEEECS-SSCEEE-
T ss_pred CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee-ec--CCCc----EEEEEECC-CCCEEE-
Confidence 45677888999999999998875 457889999999999996322211111 10 1112 33444444 355555
Q ss_pred EeCCCeEEEEEccC
Q 003106 833 GCGDSSLSSFIAGT 846 (847)
Q Consensus 833 Gs~DG~V~vW~~gt 846 (847)
++.|+.|++|++.+
T Consensus 272 ~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 272 VGTDQGVKIFNLMT 285 (343)
T ss_dssp EEESSCEEEEESSS
T ss_pred EECCCCEEEEEeCC
Confidence 55688899999754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=257.27 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=218.5
Q ss_pred cCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCC----chhhccccccccCCCCCc-eE-Eeeec--CC----CCCC
Q 003106 548 LPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDL----ELRADMDRLVEDGSLDDN-VE-SFLSH--DD----TDPR 613 (847)
Q Consensus 548 ~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~----~~~~~~~~~~~~g~~d~~-v~-~~~s~--d~----t~~~ 613 (847)
.+..+...+..++|+|||++++++... .+||+.++ +....+. .+... |. +.+.+ ++ +++.
T Consensus 13 ~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~ 86 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDE 86 (615)
T ss_dssp CCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEET
T ss_pred CCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecC
Confidence 344555677889999999988776644 88999977 4333221 12333 33 33555 55 6778
Q ss_pred CCcEEEEeccCCc-----eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeE
Q 003106 614 DAGGRGMDVSQGF-----SFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 614 d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
|+.|++||+.++. ..+.+..+..|...|.+++|+|++++|++++.| +.|++|| .++.+..+.+|...|+
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999997441 235677788999999999999999999999988 6788887 6778889999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCC---CeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCceE
Q 003106 685 DVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSA---SVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 685 ~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~---~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
+++|+|+++ .|++++.|+.|++||+++ +..+..+.+|.. .|++++|+|+ +. +|++++.||.|++||+++++++
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEe
Confidence 999999998 899999999999999998 788889999999 9999999999 76 5669999999999999999999
Q ss_pred EEE-e---eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC
Q 003106 760 RVF-K---VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG 835 (847)
Q Consensus 760 ~~~-~---~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~ 835 (847)
..+ . .+...+.++.+.+...++++..++.|++|+....... ...... ..........+.+. ++.++++|+.
T Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~ 317 (615)
T 1pgu_A 243 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--QKWTLD-KQQLGNQQVGVVAT--GNGRIISLSL 317 (615)
T ss_dssp EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE--EEEECC-TTCGGGCEEEEEEE--ETTEEEEEET
T ss_pred EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE--EEEcCC-CCcccCceeEEEeC--CCCeEEEEEC
Confidence 999 6 7888899888876668889999999999997643221 111111 01111112222221 5778999999
Q ss_pred CCeEEEEEcc
Q 003106 836 DSSLSSFIAG 845 (847)
Q Consensus 836 DG~V~vW~~g 845 (847)
||.|++|++.
T Consensus 318 ~g~i~~~d~~ 327 (615)
T 1pgu_A 318 DGTLNFYELG 327 (615)
T ss_dssp TSCEEEEETT
T ss_pred CCCEEEEECC
Confidence 9999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=241.04 Aligned_cols=283 Identities=19% Similarity=0.179 Sum_probs=208.5
Q ss_pred CCCCcceEEEec-CCCeEeecCCC---eEEeCCCCchhhcccccc-------ccCCCCCceEEe-eec-CC----CCCCC
Q 003106 552 GTTSKPLMMFGT-DGAGTLTSPSN---QLWDDKDLELRADMDRLV-------EDGSLDDNVESF-LSH-DD----TDPRD 614 (847)
Q Consensus 552 ~~~~~~~v~~s~-dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~-------~~g~~d~~v~~~-~s~-d~----t~~~d 614 (847)
|...+..++|+| +|.++++++.+ ++||+.++.....+.... ....+...|... +.+ ++ +++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 566788999999 99998886544 899999876654432110 001233334332 333 33 66789
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.|++||+.++ +.+..+. +...+.+++|++. +.+|++|+.|+.|++||+++++.+..+..|...|++++|+|+
T Consensus 122 ~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 122 KTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp SEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred CeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 99999999987 3444443 7888999999994 459999999999999999999999999999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCCCCceEEEe---------------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 692 MP-RLATSSFDKTVRVWDADNPGYSLRTF---------------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 692 ~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~---------------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
++ .|++++.||.|++||+++...++..+ .+|...|++++|+|++. +|++++.||.|++||+++
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCC
Confidence 98 58999999999999999855556655 57889999999999987 556999999999999999
Q ss_pred CceEEEEeeC------CceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcE
Q 003106 756 GSCTRVFKVE------SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829 (847)
Q Consensus 756 ~~~~~~~~~~------~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 829 (847)
++....+..+ ..............++.+..++.|.+|+...... ...+. .+...+....|+ + ++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~-~~~~~v~~~~~s----~-~~~~ 348 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--ITMLK-GHYKTVDCCVFQ----S-NFQE 348 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE--EEEEC-CCSSCEEEEEEE----T-TTTE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc--eeeec-cCCCeEEEEEEc----C-CCCE
Confidence 8766544322 1122233344556677778889999999654322 22211 122333333343 4 6789
Q ss_pred EEEEeCCCeEEEEEccCC
Q 003106 830 LYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 830 l~sGs~DG~V~vW~~gty 847 (847)
|++|+.||.|++|++.++
T Consensus 349 l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEEETTSCEEEEEECC-
T ss_pred EEEECCCCeEEEEeCCCC
Confidence 999999999999998753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=253.38 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=210.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||..+++.+.+ ++||.... ....+. .+...+. +.+.+++ +++.|+.+++||+.
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~~~~------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLT------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEEEEe------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 44567889999999998876544 89996532 222111 1222232 3344444 57789999999986
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||. +++.+..+.+|...|++|+|+|++++|++++.|++
T Consensus 334 ~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 334 GQ----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp SC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CC----eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 54 55677899999999999999999999999999999995 57888899999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 782 (847)
|+|||.. +..+..+.+|...|++++|+|++. +|++++.|++|++||+ +++++..+..|...+.++.+..+ ..+.+
T Consensus 409 v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 409 VKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEECTT--CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEeCC--CCEEEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999964 577888999999999999999987 5669999999999996 57788899999999999988754 56778
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+..++.|++|+... .....+. .+...+....|+ + ++.+|++|+.||.|+||+.
T Consensus 485 ~~~d~~i~iw~~~~---~~~~~~~-~h~~~v~~l~~s----~-dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 485 ASDDKTVKLWNRNG---QLLQTLT-GHSSSVRGVAFS----P-DGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EETTSEEEEEETTS---CEEEEEE-CCSSCEEEEEEC----T-TSSCEEEEETTSEEEEECT
T ss_pred EeCCCEEEEEcCCC---CEEEEEe-CCCCCEEEEEEc----C-CCCEEEEEECcCEEEEEeC
Confidence 88999999999532 1121111 123333443333 3 6788999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=261.67 Aligned_cols=229 Identities=10% Similarity=0.045 Sum_probs=166.8
Q ss_pred EecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecC------C----CCCCCCcEEEEeccCCc
Q 003106 561 FGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHD------D----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 561 ~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d------~----t~~~d~~v~vwd~~~~~ 626 (847)
.+|++..+++++.+ +|||+.+++........+. + ..+.|. +.+.++ + +++.|++|++||+.++.
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~-~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-H-SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEE-E-CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-e-cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 35666666655544 8999977654211111011 1 111222 223332 1 56789999999998763
Q ss_pred ee--------eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEE--EEcCCC-CE
Q 003106 627 SF--------KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDV--RFSPSM-PR 694 (847)
Q Consensus 627 ~~--------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v--~fsp~~-~~ 694 (847)
.. ++..++.+|...|+||+|+++ ..|++|+.||+|+|||++++ .+...+.+|...|++| +|++++ .+
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeE
Confidence 11 234578899999999999986 48999999999999999976 4456788999999999 578887 89
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
||||+.|++|+|||+++ ..++.++.+|.. .|.+|+|+|++.. |++++.|++|++||++++.++..+.+|...|+++
T Consensus 326 laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI 403 (524)
T ss_dssp EEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred EEEeccCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence 99999999999999997 566666667653 5889999999875 5688899999999999999999999999999999
Q ss_pred EecCC-CEEEEEcCCCcEEEEcC
Q 003106 773 NAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 773 ~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
++... ..+++++.++.|++|+.
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBS
T ss_pred EeCCCCCeEEEEECCCEEEEEec
Confidence 88754 46789999999999983
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-25 Score=245.67 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=180.0
Q ss_pred CCCCCCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEccCC
Q 003106 610 TDPRDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHS 680 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~ 680 (847)
+++.++.|++||+...... +.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 4577899999999664222 34566789999999999999 9999999999999999999987 6788899999
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceEEEe--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 681 SLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 681 ~~I~~v~fsp~~-~~Lasgs~Dg~V~iWD~~~~~~~~~~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..|++|+|+|++ ++|++++.||+|+|||+++ +..+..+ .+|...|++++|+|++. +|++++.||.|+|||+++++
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCc
Confidence 999999999998 6999999999999999998 7788888 88999999999999987 45589999999999999999
Q ss_pred eEEEE-eeCCce-EEEEEecCCCE-EEEE---cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE-
Q 003106 758 CTRVF-KVESFC-CWCVNAMNRPC-LWDK---LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL- 830 (847)
Q Consensus 758 ~~~~~-~~~~~~-v~~~~~~~~~~-l~~~---~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l- 830 (847)
++..+ ..+... +.++.+..... ++++ ..++.|.+||........... ...+...+....| .+ ++.+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~----s~-~~~~l~ 283 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFF----DP-DTNIVY 283 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEE----ET-TTTEEE
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEEE----cC-CCCEEE
Confidence 99988 566654 66666665554 4455 589999999976433211111 1112222333333 34 45555
Q ss_pred EEEeCCCeEEEEEccC
Q 003106 831 YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG~V~vW~~gt 846 (847)
++|+.||.|++|++.+
T Consensus 284 ~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITS 299 (402)
T ss_dssp EEETTCSCEEEEEECS
T ss_pred EEEcCCCeEEEEEecC
Confidence 5677899999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=234.84 Aligned_cols=208 Identities=16% Similarity=0.157 Sum_probs=166.3
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iW 707 (847)
..+.+|.+.|++++|+++|++||+|+.|++|+|||+.. .+.+.++.+|.+.|++|+|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 4678899999999999999874 8899999999999999
Q ss_pred ECCCCC-ceEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecCC-----
Q 003106 708 DADNPG-YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMNR----- 777 (847)
Q Consensus 708 D~~~~~-~~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~~----- 777 (847)
|+++.. ..+..+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+..|...|.++.+...
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 998732 356778889999999999997 55 67799999999999998763 24667788888988887653
Q ss_pred ---------CEEEEEcCCCcEEEEcCCcccce--eeecccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEc
Q 003106 778 ---------PCLWDKLDAGDIQISDSLFINAN--IFCGLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 778 ---------~~l~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~ 844 (847)
..++++..++.|++|+....... ....+ ..+...+....| .+.. +.+|++|+.||+|+||++
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~----sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAW----SPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEE----CCCCCCceEEEEEECCCcEEEEEe
Confidence 47889999999999986432211 11111 112333344344 4432 578999999999999997
Q ss_pred c
Q 003106 845 G 845 (847)
Q Consensus 845 g 845 (847)
.
T Consensus 237 ~ 237 (297)
T 2pm7_B 237 D 237 (297)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-24 Score=242.70 Aligned_cols=271 Identities=18% Similarity=0.344 Sum_probs=213.8
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~ 625 (847)
+...+..+.|+ +..+++++.+ ++||+.+++....+. .+...+.++...+. +++.|+.|++||+.++
T Consensus 158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY------GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC------CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC
Confidence 33455667776 5566665544 899999886654432 12333444333333 6788999999999976
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
+.+..+.+|...|.+++| ++++|++|+.||.|++||+++++.+.++.+|...|++++| ++.+|++++.||+|+
T Consensus 230 ---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 230 ---QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp ---CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred ---cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 567788899999999999 7889999999999999999999999999999999999999 788999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceEEEEEecCCCEEEE
Q 003106 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 706 iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v~~~~~~~~~~l~~ 782 (847)
+||+++ +..+..+.+|...|.++.++++ +|++++.||.|++||+++++++..+.. +...|.++.+. ...+++
T Consensus 303 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s 377 (445)
T 2ovr_B 303 VWDVET-GNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVIT 377 (445)
T ss_dssp EEETTT-CCEEEEECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEE
T ss_pred EEECCC-CCEEEEEcCCcccEEEEEEeCC---EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-CCEEEE
Confidence 999998 7888999999999999998643 677999999999999999999999986 77789999885 578889
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe----EEEEEcc
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS----LSSFIAG 845 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~----V~vW~~g 845 (847)
++.+|.|++|+...... ...............+|.+.+.+ ++.++++|+.||+ |.||+..
T Consensus 378 ~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred EeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence 99999999999664322 22221111122334456666655 6789999999998 9999975
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=248.49 Aligned_cols=256 Identities=11% Similarity=0.131 Sum_probs=183.1
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceee
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 629 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~ 629 (847)
...+..++|+|||.++++++.+ +|||+.++...... ....++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-----------------------------------~~~~~~ 72 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-----------------------------------SRGEYN 72 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-----------------------------------CCCCEE
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-----------------------------------ccccee
Confidence 4567889999999988776544 66776654321100 001334
Q ss_pred EeEEeecCC------------CCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcee----------------------
Q 003106 630 EANSVRAST------------SKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSK---------------------- 673 (847)
Q Consensus 630 ~~~~l~~h~------------~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~~~---------------------- 673 (847)
....+.+|. ..|++++|+|++ .+|++|+.|++|+|||+.++...
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 566777887 889999999998 89999999999999998764331
Q ss_pred -----------------EE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-------EeccCCCCeEE
Q 003106 674 -----------------TN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVMS 728 (847)
Q Consensus 674 -----------------~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-------~~~~h~~~V~s 728 (847)
.. +.+|...|++++|+|++++|++| .|++|+|||+++.+..+. .+.+|...|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 12 36799999999999999999998 799999999995344444 25689999999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCCce----EEEEeeCCc------------eEEEEEecCCC-EEEEEcCCCcEEE
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKVESF------------CCWCVNAMNRP-CLWDKLDAGDIQI 791 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~----~~~~~~~~~------------~v~~~~~~~~~-~l~~~~~~g~i~i 791 (847)
++|+|++..+|++|+.||+|++||+++++. +..+..+.. .|.++.+.... .++++.. +.|++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 999999855788999999999999999887 788888775 78888887654 5566666 99999
Q ss_pred EcCCcccceeeecccccCCCC---------ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 792 SDSLFINANIFCGLGWYGSDE---------IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~---------~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
||.......+....++..... .....+.+.+.+ ++.+|++|+.||.|+||++.+
T Consensus 311 wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 311 WDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp EETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTT
T ss_pred EeCCCCccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCC
Confidence 997641111111111110000 000011123334 678899999999999999854
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=232.15 Aligned_cols=204 Identities=19% Similarity=0.262 Sum_probs=165.8
Q ss_pred CCCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc-eee
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF-SFK 629 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~-~~~ 629 (847)
.|...+..++|++||+++++++ .|+.|++||+.++. .++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~----------------------------------------~dg~i~iw~~~~~~~~~~ 48 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCS----------------------------------------SDQHIKVFKLDKDTSNWE 48 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE----------------------------------------TTSEEEEEEECSSSCCEE
T ss_pred ccccceeEEEEcCCCCEEEEee----------------------------------------CCCeEEEEECCCCCCcce
Confidence 4555778888988888665543 24556666666431 335
Q ss_pred EeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------ceeEEEccCCCCeEEEEEcCC--CCEEE
Q 003106 630 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPS--MPRLA 696 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~---------~~~~~l~~h~~~I~~v~fsp~--~~~La 696 (847)
....+.+|...|++++|++ |+++|++|+.||+|+|||++++ +.+..+..|...|++++|+|+ +++|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 6677889999999999999 6999999999999999999876 567888899999999999999 99999
Q ss_pred EEeCCCcEEEEECCCCCceEEEe-------------ccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCce--E
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTF-------------MGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSC--T 759 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~-------------~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~--~ 759 (847)
+++.||+|++||+++. ..+..+ .+|...|.+++|+|+ ...++++++.|+.+.+|+...++. +
T Consensus 129 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 129 CLGNDGILRLYDALEP-SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEETTCEEEEEECSST-TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EecCCCcEEEecCCCh-HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999873 332222 267889999999997 234677999999998888888765 6
Q ss_pred EEEeeCCceEEEEEecCC-----CEEEEEcCCCcEEEEcCC
Q 003106 760 RVFKVESFCCWCVNAMNR-----PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~-----~~l~~~~~~g~i~i~d~~ 795 (847)
..+..|...|.++.+... ..++++..++.|++|+..
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 677788899999998877 478899999999999954
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=239.07 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=181.2
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee--cCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~l~fspd----g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
++.++.|++||+.++.....+..+. .|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+.+|...|+
T Consensus 40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~ 119 (366)
T 3k26_A 40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN 119 (366)
T ss_dssp EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE
T ss_pred ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE
Confidence 3456689999999775555554443 37789999999998 67999999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 685 DVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 685 ~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
+++|+| ++++|++++.||+|+|||+++ +..+..+ .+|...|++++|+|++. +|++++.||.|++||+++++.+.
T Consensus 120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMN 197 (366)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHH
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCcccc
Confidence 999999 899999999999999999998 6777777 68999999999999987 55699999999999999876554
Q ss_pred EEee----------------------------CCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccce------------
Q 003106 761 VFKV----------------------------ESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINAN------------ 800 (847)
Q Consensus 761 ~~~~----------------------------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~------------ 800 (847)
.+.. +...|.++.+. ...++++..++.|++|+.......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 3332 77888888887 668899999999999995533220
Q ss_pred eeecccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEccC
Q 003106 801 IFCGLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 801 ~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~gt 846 (847)
....+. .+...+....|+ + + +.+|++|+.||.|++|++.+
T Consensus 277 ~~~~~~-~~~~~v~~~~~s----~-~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 277 ILGRFD-YSQCDIWYMRFS----M-DFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEEEEE-CSSCCSSCCCCE----E-CTTSSEEEEECTTSCEEEEECCS
T ss_pred eecccc-ccCCcEEEEEEc----C-CCCCcEEEEEecCCcEEEEECCC
Confidence 111111 122223333333 3 4 78999999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-24 Score=257.60 Aligned_cols=226 Identities=17% Similarity=0.183 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEeccCCce--eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.+... ......+.+|...|++|+|++++++|++|+.||+|+|||+.++..+..+.+|...|++|+
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence 678899999999976422 245667899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEe---ccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~---~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
|+|++++|++|+.|++|+|||+.. ....... .+|...|.+++|+|++. .+|++|+.|++|+|||+++++++..+.
T Consensus 480 ~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~ 558 (694)
T 3dm0_A 480 FSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558 (694)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999999999999999999999875 3222222 46889999999999863 467799999999999999999999999
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
+|...|.++.+.. ...+++++.++.|++||...... ..... ....+....| .+ ++.+|++ +.|+.|+||
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~----sp-~~~~l~~-~~~~~i~iw 628 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--LYSLE--ANSVIHALCF----SP-NRYWLCA-ATEHGIKIW 628 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE--EECCB--CSSCEEEEEE----CS-SSSEEEE-EETTEEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--EEEec--CCCcEEEEEE----cC-CCcEEEE-EcCCCEEEE
Confidence 9999999998875 45788899999999999764322 21111 1222333333 33 4455555 456779999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
++.+
T Consensus 629 d~~~ 632 (694)
T 3dm0_A 629 DLES 632 (694)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9854
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=243.78 Aligned_cols=273 Identities=12% Similarity=0.049 Sum_probs=193.2
Q ss_pred EEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEE-eeec-CC----CCCCCCcEEEEeccC---CceeeE
Q 003106 560 MFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSH-DD----TDPRDAGGRGMDVSQ---GFSFKE 630 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~-d~----t~~~d~~v~vwd~~~---~~~~~~ 630 (847)
.|++++..+++.. +|+.. ++....+ . ..+...|.+ .+.+ ++ +++.|++|++||+.+ +..++.
T Consensus 34 ~f~~~~~~~~~~~---~w~~~-g~~~~~~----~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN---MGNLR-GKLIATL----M-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC---GGGCC-CCEEEEE----C-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc---ccccc-ceEEeee----c-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4567777655544 46633 3222221 0 112233333 3444 44 678999999999987 432333
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeEEEcc------------CCCCeEEEE--EcCCCC
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---TLKSKTNLEE------------HSSLITDVR--FSPSMP 693 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---~~~~~~~l~~------------h~~~I~~v~--fsp~~~ 693 (847)
...+ .|...|++|+|++++++|++|+.||+|+|||++ +++.+..+.. +...+.++. +++++.
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 3343 599999999999999999999999999999995 5555444332 456677777 568899
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-eCCceEE
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-VESFCCW 770 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-~~~~~v~ 770 (847)
+|++|+.|++|++||+++ +..+..+.+ |...|++++|+|++. +|++|+.||.|++||+++++++..+. .+...|.
T Consensus 184 ~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred EEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence 999999999999999998 778888887 899999999999977 56699999999999999999999987 6777888
Q ss_pred EEEecC-----CCEEEEEcCCCcEEEEcCCcccceeeeccc--------cc-----------CCCCccccccccccccCC
Q 003106 771 CVNAMN-----RPCLWDKLDAGDIQISDSLFINANIFCGLG--------WY-----------GSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 771 ~~~~~~-----~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~--------~~-----------~~~~~~~~~w~~~~~~~~ 826 (847)
++.+.. ...++++..++.|++||............. +. ........++.+.+. +
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~ 339 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--N 339 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--T
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--C
Confidence 885432 337888999999999997533221111100 00 000012223333333 4
Q ss_pred CcEEEEEeCCCeEEEEEccC
Q 003106 827 ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+|++|+.||.|++|++.+
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTC
T ss_pred ceEEEecCCCCeEEEEECCC
Confidence 58999999999999999854
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=253.70 Aligned_cols=227 Identities=12% Similarity=0.005 Sum_probs=174.2
Q ss_pred CCCCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCce----------
Q 003106 610 TDPRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD------GKLLATGGHDKKAVLWHTDTLKS---------- 672 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspd------g~~Lasgs~Dg~V~vwd~~~~~~---------- 672 (847)
+++.|++|+|||+.++.. .....++..|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 577899999999987632 2223456788999999999996 57999999999999999986532
Q ss_pred -eEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE--EEecCCCeEEEEEeCCCcEE
Q 003106 673 -KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL--DFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 673 -~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl--~fsp~g~~ll~s~s~Dg~V~ 749 (847)
..++.+|...|++|+|++++ .|++|+.||+|+|||+++....+..+.+|...|++| +|++++..+|+||+.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 34788999999999999864 899999999999999997545667788999999999 56777646888999999999
Q ss_pred EEECCCCceEEEEeeCCc--eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 750 YWSINNGSCTRVFKVESF--CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
|||+++++++..+.++.. .|.++.+.+ ...+.++..++.|++|+........ ...+ +.. .++.+.+.+ +
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~-~l~g--H~~----~V~sva~Sp-~ 408 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH-PLVS--RET----TITAIGVSR-L 408 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE-EEEE--CSS----CEEEEECCS-S
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce-eeec--CCC----ceEEEEeCC-C
Confidence 999999988877776643 366677665 4467788889999999965432211 1111 222 344455545 6
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 003106 827 ECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~g 845 (847)
+.+|++|+.||+|++|++.
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCBCEEEETTTEEECCBSC
T ss_pred CCeEEEEECCCEEEEEech
Confidence 7789999999999999863
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=258.12 Aligned_cols=276 Identities=16% Similarity=0.234 Sum_probs=213.3
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
+...+..++|+|||.++++++.+ +|||+.++.....+.. +...|. +.+++++ +++.|+.|++||+.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 44567899999999999887654 7999998866554321 222333 2344444 56779999999999
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 701 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp-~~~~Lasgs~D 701 (847)
++ +.+..+.+|.+.|++++|+|++++|++|+.||+|+|||++++ .....+.+|...|++++|+| ++..|++++.|
T Consensus 86 ~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 86 TG---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TC---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CC---cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 77 567778899999999999999999999999999999999976 77788889999999999999 78899999999
Q ss_pred CcEEEEECCCCCceEEEecc-CCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 702 KTVRVWDADNPGYSLRTFMG-HSASVMSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~-h~~~V~sl~fsp--~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
|+|++||+++ +.....+.. +...|.+++|+| ++. +|++++.||.|++||+++++++..+..|...+.++.+...
T Consensus 163 g~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 163 RTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp SEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 9999999987 444555544 448899999999 766 5669999999999999999999999999999998887654
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..++++..+|.|++|+...... ...... + ...+|.+.+.+....++++.+.|+.+.+|+++
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~--~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKV--EKTLNV-G----LERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSE--EEEECC-S----SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred CEEEEEeCCCeEEEEECCCCcE--EEEeec-C----CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 4788899999999999664322 111111 1 12345555555444443444556668888764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=236.07 Aligned_cols=272 Identities=18% Similarity=0.240 Sum_probs=201.0
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-ee--cCC----CCCCCCcEEEE
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LS--HDD----TDPRDAGGRGM 620 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s--~d~----t~~~d~~v~vw 620 (847)
.+...+..++|++++ .+++++.+ ++||+.+++....+. .+...+.+. +. .++ +++.|+.|++|
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 355678899999988 56555444 899999887554332 122333322 22 232 67889999999
Q ss_pred eccCCceee--------------------EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC
Q 003106 621 DVSQGFSFK--------------------EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 621 d~~~~~~~~--------------------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
|+.++.... .+..+.+|...|.++ ++++++|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 998763222 256788999999988 4678999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~ 760 (847)
..|++++|+|++++|++|+.||+|++||+++ +.++.++.+|...|.+++|++ . +|++++.||.|++||++++....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999999999999999999998 788999999999999999984 3 67799999999999999988776
Q ss_pred EEeeCCceEEEEEe-cCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeE
Q 003106 761 VFKVESFCCWCVNA-MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839 (847)
Q Consensus 761 ~~~~~~~~v~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V 839 (847)
.+.... .+..+.+ .+...+..+. ++.|++|+..... ........+. ..+|.+.+. ...++++++.||.+
T Consensus 387 ~~~~~~-~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~--~~~~~~~~~~----~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 387 SYHHTN-LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK--LVHANILKDA----DQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp EEECTT-CCCEEEEEECSSEEEEEE-TTEEEEEETTTCC--EEESCTTTTC----SEEEEEEEE--TTEEEEEEEETTEE
T ss_pred eecCCC-CccEEEEEeCCCEEEEec-CCeEEEEECCCCc--EEehhhccCC----CcEEEEEec--CCEEEEEEEeCCeE
Confidence 664332 2333222 3344555555 8999999976432 2222122222 334444443 46677778888887
Q ss_pred EEEEcc
Q 003106 840 SSFIAG 845 (847)
Q Consensus 840 ~vW~~g 845 (847)
.+|.+.
T Consensus 457 ~i~~ld 462 (464)
T 3v7d_B 457 FLEILD 462 (464)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 777654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=236.94 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=156.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD 708 (847)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.++. .+.++.+|...|++|+|++ ++++|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998764 4678899999999999986 488999999999999999
Q ss_pred CCCCC-ceEEEeccCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEEecCC------
Q 003106 709 ADNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVNAMNR------ 777 (847)
Q Consensus 709 ~~~~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~~~~~------ 777 (847)
+++.. ..+..+.+|...|++|+|+|+. ..+|++|+.|++|++||++.+.. ...+..|...+.++.+...
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98732 4567788999999999999983 34677999999999999987632 3344566666766665443
Q ss_pred ------------CEEEEEcCCCcEEEEcCCcccc-eeeecccccCCCCccccccccccccC---CCcEEEEEeCCCeEEE
Q 003106 778 ------------PCLWDKLDAGDIQISDSLFINA-NIFCGLGWYGSDEIPAPSWKVSCRSC---RECCLYTGCGDSSLSS 841 (847)
Q Consensus 778 ------------~~l~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~l~sGs~DG~V~v 841 (847)
..++++..++.|++|+...... .....+ ..+...+....|+ +. ...+|++|+.||+|+|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~s----p~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWA----PSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECC----CCSSCSCCEEEEEETTCEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEec----CCCCCCCceEEEEcCCCeEEE
Confidence 4688899999999999642211 111111 1122333343443 42 2478999999999999
Q ss_pred EEccC
Q 003106 842 FIAGT 846 (847)
Q Consensus 842 W~~gt 846 (847)
|++.+
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 98753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=258.55 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=182.9
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEccCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~I~~v~ 687 (847)
+.|+.|++||+.++ ..+.+..+.+|.+.|++++|+++ +++|++|+.||+|+|||+.+++ .+..+.+|...|++++
T Consensus 28 ~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~ 106 (753)
T 3jro_A 28 SSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 106 (753)
T ss_dssp ETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEE
Confidence 34567788887755 55778889999999999999987 9999999999999999999886 7778889999999999
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecC-------------CCeEEEEEeCCCcEEEE
Q 003106 688 FSPS--MPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN-------------KDDLICSCDGDGEIRYW 751 (847)
Q Consensus 688 fsp~--~~~Lasgs~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~-------------g~~ll~s~s~Dg~V~iW 751 (847)
|+|+ +++|++|+.||+|++||+++.. .....+.+|...|.+++|+|. +. +|++|+.||.|++|
T Consensus 107 ~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iw 185 (753)
T 3jro_A 107 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIW 185 (753)
T ss_dssp ECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEE
T ss_pred ECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEE
Confidence 9999 9999999999999999998742 345567789999999999994 55 66799999999999
Q ss_pred ECCCC----ceEEEEeeCCceEEEEEecCC----CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccc
Q 003106 752 SINNG----SCTRVFKVESFCCWCVNAMNR----PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 752 D~~~~----~~~~~~~~~~~~v~~~~~~~~----~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
|++++ .++..+..|...|.++.+... ..++++..+|.|++|+.............. .......++.+.+.
T Consensus 186 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~s 263 (753)
T 3jro_A 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK--EEKFPDVLWRASWS 263 (753)
T ss_dssp EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS--SSCCSSCCCCEEEC
T ss_pred eccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec--cCCCCCceEEEEEc
Confidence 99987 566778889999999988765 578889999999999965432211111111 11112223334444
Q ss_pred cCCCcEEEEEeCCCeEEEEEcc
Q 003106 824 SCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+ ++.+|++|+.||.|+||++.
T Consensus 264 p-dg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 L-SGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp T-TTCCEEEECSSSCEECCBCC
T ss_pred C-CCCEEEEEcCCCEEEEEecC
Confidence 4 67889999999999999975
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=219.04 Aligned_cols=272 Identities=15% Similarity=0.240 Sum_probs=200.2
Q ss_pred cceEEEecCCCeEeec--CCCeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 556 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~--~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
...+.||+++ .++++ +.++|||+.+++....+. ...+...|. +.+.+++ +++.|++|++||+.++
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~----~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--- 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQ----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--- 99 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEE----CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEE----ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---
Confidence 3578999987 44443 344999999987655432 112333343 3355554 7889999999999987
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+.+..+.+|...+.++.+ ++.+|++|+.++.+++|+.... ..+..+.+|...+.++.|++++++|++++.|++|+||
T Consensus 100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 677888999999988766 4679999999999999998854 5667788999999999999999999999999999999
Q ss_pred ECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEE--EEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE
Q 003106 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLIC--SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 708 D~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~--s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 782 (847)
|+++.. ..+.....|.+.|.++.|++++..+++ +++.+++|++||.+.........................++.
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEE
Confidence 998732 234566678899999999999887664 456789999999999887776665554433333344444444
Q ss_pred --EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 783 --KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 783 --~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+..++.|++||...... +..+. .+...+.. +.+.+ ++.+|+||+.||+|+||++.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~--~~~l~-gH~~~V~~----l~~sp-dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAK--VAELK-GHTSRVLS----LTMSP-DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTCCE--EEEEC-CCSSCEEE----EEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCCcE--EEEEc-CCCCCEEE----EEEcC-CCCEEEEEecCCeEEEEECC
Confidence 44789999999764322 22211 12333333 44444 67899999999999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=267.20 Aligned_cols=233 Identities=23% Similarity=0.343 Sum_probs=195.4
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|+|||+++++++.+ ++||+.+++....+. .+...|. +.+++++ +++.|+.|++||+
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 355678899999999999886654 899999987654432 1223333 3455555 6778999999999
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
.++ +.+..+.+|...|.+++|++ ++.+|++|+.|+.|++||+.+++++.++.+|...|++++|+|++++|++++.
T Consensus 687 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 687 ATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 987 67778899999999999999 5568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCCceEEE-------------------------------------------------------eccCCCC
Q 003106 701 DKTVRVWDADNPGYSLRT-------------------------------------------------------FMGHSAS 725 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~-------------------------------------------------------~~~h~~~ 725 (847)
||+|++||+++ +..... ..+|...
T Consensus 764 dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 764 DGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SSEEEEEEGGG-TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CCeEEEEeCCC-CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence 99999999876 222111 1268889
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcC
Q 003106 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 726 V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
|.+++|+|++. ++++++.||.|++||+.++.++..+.+|...|.++.+... ..+++++.++.|.+|+.
T Consensus 843 v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 843 IQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999987 5668999999999999999999999999999999988754 57889999999999983
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=243.44 Aligned_cols=185 Identities=9% Similarity=0.030 Sum_probs=156.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcc--CCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~I~~v 686 (847)
+++.||.|+|||+.++ .......+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++......... +...|.++
T Consensus 137 sGs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 215 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL 215 (435)
T ss_dssp EEETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCE
T ss_pred EEeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEE
Confidence 6788999999999877 3445556779999999999998 789999999999999999987654433333 34467899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE---e
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---K 763 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~---~ 763 (847)
+|++++.+|++|+.||+|++||++. ..+..+.+|...|++|+|+|++..+|++|+.|++|+|||+++.+....+ .
T Consensus 216 ~~~~~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 216 DVSASSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEETTTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EECCCCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 9999999999999999999999975 5677888999999999999999989999999999999999987654433 4
Q ss_pred eCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcc
Q 003106 764 VESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 764 ~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~ 797 (847)
.|...|.++.+.. ...+++++.++.|++|+....
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 6788899988764 567889999999999996543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=234.27 Aligned_cols=278 Identities=10% Similarity=0.051 Sum_probs=199.1
Q ss_pred ceEEEecCCCeEeec----CCCeEEeCCCCchh-hccccccccCCCCCceEEe-eec-CC----CCCCCCcEEEEeccCC
Q 003106 557 PLMMFGTDGAGTLTS----PSNQLWDDKDLELR-ADMDRLVEDGSLDDNVESF-LSH-DD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~----~~~~iWD~~~~~~~-~~~~~~~~~g~~d~~v~~~-~s~-d~----t~~~d~~v~vwd~~~~ 625 (847)
..++++++...+++. +..+|||+...... ..+..+ ..+...|..+ +.+ ++ +++.|+.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV---CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB---CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE---ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 356777777655442 34489999654222 211111 1233344433 333 33 6788999999999886
Q ss_pred cee----eEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE--ccCCCCeEEEEEcCCCCEEEEE
Q 003106 626 FSF----KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 626 ~~~----~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~h~~~I~~v~fsp~~~~Lasg 698 (847)
... +.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.+..+ ..|...|++++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 221 4677889999999999999998 69999999999999999999999999 8899999999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEe-ccCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCce-EEEEe-eCCceEEE
Q 003106 699 SFDKTVRVWDADNPGYSLRTF-MGHSAS-VMSLDFHPNKDDLICSC---DGDGEIRYWSINNGSC-TRVFK-VESFCCWC 771 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~-~~h~~~-V~sl~fsp~g~~ll~s~---s~Dg~V~iWD~~~~~~-~~~~~-~~~~~v~~ 771 (847)
+.||.|+|||+++ +..+..+ .+|.+. +.++.|+|++. +|++| +.|+.|++||+++++. +..+. .+...+.+
T Consensus 195 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 195 CRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred ecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 9999999999998 7777777 788776 89999999976 66677 6899999999998764 33333 34555677
Q ss_pred EEecCC-CEE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 772 VNAMNR-PCL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 772 ~~~~~~-~~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+... ..+ .++..++.|.+|+.......+.....+.+...+....|. + ++.+++ +.|+.+++|++.+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s----p-~~~~~~--s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM----P-KRGLEV--NKCEIARFYKLHE 342 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----C-GGGSCG--GGTEEEEEEEEET
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----c-ccccce--ecceeEEEEEcCC
Confidence 766543 344 456679999999966433211111112223334444444 3 344444 4677999999753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=238.06 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=185.9
Q ss_pred CCCCCCcEEEEeccCC-------ceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce-------eE
Q 003106 610 TDPRDAGGRGMDVSQG-------FSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKS-------KT 674 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~-------~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~-------~~ 674 (847)
+++.++.|++||+.+. .....+..+.+|...|++|+|+|+++ +|++|+.||+|+|||+.++.. ..
T Consensus 146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 225 (430)
T 2xyi_A 146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225 (430)
T ss_dssp EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSE
T ss_pred EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccce
Confidence 5677899999999862 13567788899999999999999988 999999999999999987322 45
Q ss_pred EEccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 675 NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+.+|...|.+|+|+| ++.+|++++.||.|+|||+++.. ..+..+..|...|++|+|+|++.++|++|+.||.|+||
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vw 305 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 6778999999999999 67789999999999999999842 56777889999999999999998888899999999999
Q ss_pred ECCC-CceEEEEeeCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccc------------eeeecccccCCCCcccc
Q 003106 752 SINN-GSCTRVFKVESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINA------------NIFCGLGWYGSDEIPAP 816 (847)
Q Consensus 752 D~~~-~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~ 816 (847)
|+++ +.++..+..|...|.++.+... ..+++++.++.|.+|+...... ...... ..+...+.
T Consensus 306 d~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~-- 382 (430)
T 2xyi_A 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKIS-- 382 (430)
T ss_dssp ETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEE--
T ss_pred eCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCce--
Confidence 9998 5678899999999999988754 4688899999999999654221 111111 11122233
Q ss_pred ccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 817 SWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 817 ~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+....+|++++.||.|+||++.
T Consensus 383 --~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 383 --DFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp --EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred --EEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 344445334499999999999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=239.48 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=171.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEccCCCCeEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDV 686 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~~h~~~I~~v 686 (847)
+++.|+.|++||+.++ .++.+..+.+|...|++++|+|++++|++|+.|++|+|||+.+++ ....+..|...|+++
T Consensus 28 ~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 28 TTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp CCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred EecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 5678999999999876 556778889999999999999999999999999999999999876 677788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCc--eEEEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC---------
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--------- 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--------- 754 (847)
+|+|++++|++++.|++|++||+++... .+..+.+ |...|++++|+|++. +|++++.|++|++||++
T Consensus 107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999999999999999999999997332 4677777 999999999999987 66699999999999995
Q ss_pred ---------CCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceee-ecccccCCCCccccccccccc
Q 003106 755 ---------NGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIF-CGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 755 ---------~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~ 823 (847)
.++++..+ .|...|.++.+... ..++++..++.|++|+......... ......+...+....|+
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---- 260 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA---- 260 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE----
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc----
Confidence 35566667 78888999988654 4688899999999999654332111 11111122233333343
Q ss_pred cCCCcEEEEEeCCCeEEEEEc
Q 003106 824 SCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+ ++.+|++|+.|+.+ +|+.
T Consensus 261 ~-~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 261 N-ESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp E-TTEEEEEESSSSEE-EECC
T ss_pred C-CCCEEEEEcCCcEE-EEEe
Confidence 4 57788888877777 5543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=242.78 Aligned_cols=260 Identities=10% Similarity=0.033 Sum_probs=187.0
Q ss_pred CCCcceEEEecCCCeEeecCCCeEE-eCCCCchhhccccccccCCCCCce-EEeeecCCCCCCCCcEEEEeccCCceeeE
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSNQLW-DDKDLELRADMDRLVEDGSLDDNV-ESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~~iW-D~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~t~~~d~~v~vwd~~~~~~~~~ 630 (847)
...+.+++|+|||+.+++++.++.- |...+ ..+ .+ +...| .+-+++++ .++.+.+|+.... .
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~---~~l-----~g-h~~~v~~V~FsPdg---~~~~~~~~~~~~~----~ 78 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYA---KDI-----NC-NSKNLFHVKEFPLE---FENKLDFELAQQN----G 78 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCC---SCC-----SS-BGGGTEEEEEECCC---CCCTTTTSCCCSS----C
T ss_pred hccEEEEEECCCCCEEEEEcCCceeeccccc---cee-----cC-CCccEEEEEECCCC---CcceEEEEeCCCc----e
Confidence 3567799999999999999888432 43222 221 12 33333 34456655 4444444443322 2
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-----CeEEEEEcCCCCEEEEEeCCCcEE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-----~I~~v~fsp~~~~Lasgs~Dg~V~ 705 (847)
..++ .|...|.+|+|+|||++||+++.||+|+|||.+. ++..+. |.. .|.+|+|||||++||+|+.||+|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 4588999999999999999999999999999654 666677 665 499999999999999999999999
Q ss_pred EEECCCCCc------eEEEe----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce---EEEEe-eCCceEEE
Q 003106 706 VWDADNPGY------SLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFK-VESFCCWC 771 (847)
Q Consensus 706 iWD~~~~~~------~~~~~----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~-~~~~~v~~ 771 (847)
|||+.+... .+.++ .+|.+.|.+|+|+|+| +++++.|++|++||+.++.. ..++. +|...|.+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 999998321 36776 6788899999999997 55788899999999998773 35664 67778888
Q ss_pred EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccc-ccCCCcEEEEEeCCCeEEEEEcc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC-RSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+++. +..+.+++ ++.|++|+........+ ..+ +.. .++++.. +..++..+++++.||+ ++|...
T Consensus 232 vaFs-g~~LASa~-~~tIkLWd~~~~~~~~~-~~g--h~~----~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV-DYKVVLTC-PGYVHKIDLKNYSISSL-KTG--SLE----NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE-TTEEEEEC-SSEEEEEETTTTEEEEE-ECS--CCS----CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE-CCEEEEEe-CCeEEEEECCCCeEEEE-EcC--CCc----eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8887 56777766 68999999664333222 212 222 2333443 2336678999999999 999863
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-23 Score=227.28 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=181.1
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
+++.++.|++||+.++ .++.+..+.+|...|++++|+|++++|++|+.||.|+|||+++++.... +..|...|++++
T Consensus 25 ~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 25 ICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp EECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred EEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 4567899999999887 4558888999999999999999999999999999999999998875544 367899999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC-----------
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI----------- 753 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~----------- 753 (847)
|+|++++|++++.|+.|++||++.... ......+|...|++++|+|++. +|++++.||.|++||+
T Consensus 104 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccc
Confidence 999999999999999999999997432 2333467899999999999987 5669999999999995
Q ss_pred -------CCCceEEEEeeCCceEEEEEecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 754 -------NNGSCTRVFKVESFCCWCVNAMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 754 -------~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
..++++..+..+...+.++.+... ..++++..++.|++|+........ .+. .+...+....|+ +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~-~~~~~v~~~~~~----~- 254 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA--TLA-SETLPLLAVTFI----T- 254 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE--EEE-CSSCCEEEEEEE----E-
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE--EEc-cCCCCeEEEEEe----c-
Confidence 467888999889889999988644 588899999999999975433211 111 122233333343 3
Q ss_pred CCcEEEEEeCCCeEEEEEccC
Q 003106 826 RECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~gt 846 (847)
++.+|++| .||.|++|++.+
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEE-eCCeEEEEEccC
Confidence 45667766 999999999753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-23 Score=235.88 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=149.2
Q ss_pred CCCCCCcEEEEecc--CCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----EEccCCC
Q 003106 610 TDPRDAGGRGMDVS--QGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----NLEEHSS 681 (847)
Q Consensus 610 t~~~d~~v~vwd~~--~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~----~l~~h~~ 681 (847)
+++.|+.|++||+. ++. .+..+ ..|...|++++|+|++++|++|+.||.|++|++.+++... .+.+|..
T Consensus 120 ~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 120 CADSDKSLLVFDVDKTSKN---VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp EEGGGTEEEEEEECSSSSS---CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred EECCCCeEEEEECcCCCCc---eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 45678999999998 653 33333 3678999999999999999999999999999998776554 7788999
Q ss_pred CeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 682 LITDVRFSPS---MPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 682 ~I~~v~fsp~---~~~Lasgs~Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
.|++|+|+|+ +++|++|+.|++|+|||+++ +.++.. +.+|...|++++|+ ++. +|++++.|++|+|||+++++
T Consensus 197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCC
T ss_pred ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCc
Confidence 9999999999 99999999999999999998 556665 66899999999999 876 56699999999999999999
Q ss_pred eEEEEeeC-------------------------CceEEEEEecC-CCEEEEEc-CCCcEEEEcC
Q 003106 758 CTRVFKVE-------------------------SFCCWCVNAMN-RPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 758 ~~~~~~~~-------------------------~~~v~~~~~~~-~~~l~~~~-~~g~i~i~d~ 794 (847)
++..+..+ ...+.++.+.. ...++.+. .++.|.+|+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 98888632 23466666554 44566666 8899999997
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=230.15 Aligned_cols=211 Identities=18% Similarity=0.161 Sum_probs=170.6
Q ss_pred EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 003106 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVR 705 (847)
Q Consensus 630 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~ 705 (847)
.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++|+|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456778999999999999999999999999999999998 66778889999999999999987 89999999999999
Q ss_pred EEECCCCCc--eEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecC---
Q 003106 706 VWDADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMN--- 776 (847)
Q Consensus 706 iWD~~~~~~--~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~--- 776 (847)
|||+++ +. .+..+.+|...|++++|+|+ +. +|++++.|+.|++||++++. ....+..+...+.++.+..
T Consensus 83 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 83 IWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEcCC-CceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 999998 54 67778889999999999999 66 66799999999999999874 4456678888899998875
Q ss_pred -----------CCEEEEEcCCCcEEEEcCCcccceeeec-ccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEE
Q 003106 777 -----------RPCLWDKLDAGDIQISDSLFINANIFCG-LGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSF 842 (847)
Q Consensus 777 -----------~~~l~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW 842 (847)
...++++..++.|++||........... ....+...+....| .+.. +.+|++|+.||.|+||
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~----sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW----SPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE----CCCCCCCCeEEEEeCCCEEEEE
Confidence 6788999999999999965332221111 11112333334334 3432 7899999999999999
Q ss_pred EccC
Q 003106 843 IAGT 846 (847)
Q Consensus 843 ~~gt 846 (847)
++.+
T Consensus 237 d~~~ 240 (379)
T 3jrp_A 237 TQDN 240 (379)
T ss_dssp EESS
T ss_pred eCCC
Confidence 9854
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=232.05 Aligned_cols=221 Identities=13% Similarity=0.140 Sum_probs=180.0
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
++.|+.|++||+.++. ....+. .|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+
T Consensus 109 ~~~d~~v~lw~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 109 VALERNVYVWNADSGS---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp EEETTEEEEEETTTCC---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred EECCCeEEEeeCCCCc---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence 4568899999999873 333333 389999999999999999999999999999999999999999999999999994
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++|++|+.||.|++||++.....+..+.+|...|.+++|+|++. +|++|+.||.|++||+++++++..+..+...+
T Consensus 186 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 --RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred --CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 679999999999999999966778889999999999999999977 56699999999999999999999999999999
Q ss_pred EEEEecC--CCEEEEEc--CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE--EeCCCeEEEEE
Q 003106 770 WCVNAMN--RPCLWDKL--DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT--GCGDSSLSSFI 843 (847)
Q Consensus 770 ~~~~~~~--~~~l~~~~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s--Gs~DG~V~vW~ 843 (847)
.++.+.. ...+.++. .++.|.+||........ ... ....+....|+ + ++.+|++ |+.||.|+||+
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~--~~~--~~~~v~~~~~s----~-~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN--TVD--AGSQVTSLIWS----P-HSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE--EEE--CSSCEEEEEEC----S-SSSEEEEEECTTTCEEEEEE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE--EEe--CCCcEEEEEEC----C-CCCeEEEEeecCCCcEEEEe
Confidence 9888765 34555544 69999999976432221 111 22233333343 4 5667777 55899999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+.+
T Consensus 334 ~~~ 336 (401)
T 4aez_A 334 YSS 336 (401)
T ss_dssp EET
T ss_pred cCC
Confidence 754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=232.31 Aligned_cols=263 Identities=10% Similarity=0.005 Sum_probs=176.6
Q ss_pred ecCCCeEeecCCC---eEEeCCCCchhhcccc-ccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc------eeeEe
Q 003106 562 GTDGAGTLTSPSN---QLWDDKDLELRADMDR-LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF------SFKEA 631 (847)
Q Consensus 562 s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~-~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~------~~~~~ 631 (847)
..|+..+++++.+ ++||+.+++....+.. .+........ + .+++.|+++++|+..... ..+.+
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~-----~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--I-----ISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--E-----EEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--e-----EEecCCCeEEEEEccCceEEeecCCccee
Confidence 3456666665544 8999998876554331 0001001111 1 145678888888765321 11223
Q ss_pred EEee-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 632 NSVR-ASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
..+. +|.+.|.+++|+| ++++|++|+.||+|+|||+++++.+..+. .|...|++++|+|++.+|++|+.||+|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 3333 6778999999999 99999999999999999999998877664 455689999999999999999999999999
Q ss_pred ECCCCCceE-EEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee---CCceE--EEEEecCC-CE
Q 003106 708 DADNPGYSL-RTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV---ESFCC--WCVNAMNR-PC 779 (847)
Q Consensus 708 D~~~~~~~~-~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~---~~~~v--~~~~~~~~-~~ 779 (847)
|+++ +..+ ..+.+ |...|++|+|+|++. +|++++ |+.|+|||+++++++..+.. +...+ .++.+... ..
T Consensus 198 d~~~-~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 198 NLSS-PDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp ESSC-TTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred ECCC-CCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9998 4545 78888 999999999999987 455777 55999999999877655443 22222 34666544 45
Q ss_pred EEEEcC-CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 780 LWDKLD-AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 780 l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++.. ++.+++|+.......... .......|.. +..+...+++++.||.++++.
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQS--DTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC------CCCCEEEEEEETTEEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe-------cCceeEecCc--cccccceeEEEecCCceEEEE
Confidence 556555 889999985322211111 0111122221 122456788999999988875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=243.98 Aligned_cols=231 Identities=15% Similarity=0.235 Sum_probs=185.6
Q ss_pred CCCC-cceEEEec--CCCeEeecCCC---eEEeCCCC--------chhhccccccccCCCCCceE-EeeecCC----CCC
Q 003106 552 GTTS-KPLMMFGT--DGAGTLTSPSN---QLWDDKDL--------ELRADMDRLVEDGSLDDNVE-SFLSHDD----TDP 612 (847)
Q Consensus 552 ~~~~-~~~v~~s~--dG~~~~~~~~~---~iWD~~~~--------~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~ 612 (847)
+... +..++|+| ||+++++++.+ ++||+.++ .....+. .+...+. +.+.+++ +++
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ------VLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE------CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh------cccccEEEEEEeCCCCEEEEec
Confidence 4455 78999999 99999887655 89999755 2211111 1222232 2344443 222
Q ss_pred CC----CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCC---CeE
Q 003106 613 RD----AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSS---LIT 684 (847)
Q Consensus 613 ~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~---~I~ 684 (847)
.+ +.+.+|| .+ +.+..+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|.. .|+
T Consensus 136 ~~~~~~~~v~~~d--~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210 (615)
T ss_dssp CCSSCSEEEEETT--TC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred cCCCCccEEEEEE--CC---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence 22 5777777 33 46777889999999999999998 899999999999999999999999999999 999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCCceEEEe-c---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 685 DVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTF-M---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 685 ~v~fsp~-~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
+++|+|+ +++|++++.||.|++||+++ +..+..+ . +|...|.+++|+ ++. +|++++.|+.|++||+++++++
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEE
Confidence 9999999 99999999999999999998 7778888 6 899999999999 766 5669999999999999999999
Q ss_pred EEEeeC----CceEEEEEecCCCEEEEEcCCCcEEEEcCCc
Q 003106 760 RVFKVE----SFCCWCVNAMNRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 760 ~~~~~~----~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~ 796 (847)
..+..+ ...+.++.+.....++.+..++.|.+|+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 999876 2455666666778899999999999999653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=252.98 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=188.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.++.|++||+.++ +.+..+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|++++|+
T Consensus 30 ~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s 106 (814)
T 3mkq_A 30 TTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106 (814)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEe
Confidence 4567899999999877 5777888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-ce
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-FC 768 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-~~ 768 (847)
|++++|++++.||+|++||+++.......+.+|...|++++|+|++..+|++++.||+|++||++++.....+..+. ..
T Consensus 107 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 99999999999999999999985577888899999999999999434577799999999999999988888777655 66
Q ss_pred EEEEEec---CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 769 CWCVNAM---NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 769 v~~~~~~---~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.++.+. +...++++..++.|.+|+...... ..... .+...+....|+ + ++.+|++|+.||.|++|++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~----~-~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLE-GHMSNVSFAVFH----P-TLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEEC----S-SSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEc-CCCCCEEEEEEc----C-CCCEEEEEeCCCeEEEEECC
Confidence 7777765 466888999999999999654322 11111 122233333343 3 57799999999999999986
Q ss_pred C
Q 003106 846 T 846 (847)
Q Consensus 846 t 846 (847)
+
T Consensus 259 ~ 259 (814)
T 3mkq_A 259 T 259 (814)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-23 Score=253.79 Aligned_cols=196 Identities=11% Similarity=0.133 Sum_probs=156.1
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
+...+.+++|+|||+++++++.+ +|||....+...... ....|. +.+.++. +++.|++|++||+.+
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-------~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-------DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-------SCCCEEEEEEETTTEEEEEETTCEEEEEETTT
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-------CCCCEEEEEEcCCCEEEEEECcCeEEEEECCC
Confidence 45568899999999999887655 899988765432211 122232 2233322 567899999999998
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-----------EEEccCCCCeEEEEEcCC-C
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-----------TNLEEHSSLITDVRFSPS-M 692 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-----------~~l~~h~~~I~~v~fsp~-~ 692 (847)
+ +.+..+. |.+.|++++|+|++++|++|+.||+|++||++++++. ..+.+|.+.|++|+|+|+ +
T Consensus 89 ~---~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 89 Q---KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp C---SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred C---cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 7 3444554 7789999999999999999999999999999987753 234679999999999996 4
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccC------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGH------------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h------------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..|++|+.||+| |||+++ +.++..+.+| ...|++|+|+|+|. +|++++.||+|+|||++
T Consensus 165 ~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred CEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence 689999999999 999998 7777777665 57799999999987 66799999999999999
Q ss_pred CCceEEE
Q 003106 755 NGSCTRV 761 (847)
Q Consensus 755 ~~~~~~~ 761 (847)
+++++..
T Consensus 242 ~g~~~~~ 248 (902)
T 2oaj_A 242 SGHMIMA 248 (902)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 9987754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=230.45 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=178.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ +.+..+.+|.+.|.+++| ++++|++|+.||+|+|||+.+++.+.++.+|...|.+++|+
T Consensus 148 ~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 148 SGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222 (435)
T ss_dssp EEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred EEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc
Confidence 5678999999999876 567788899999999999 78999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCce--EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..|++|+.||+|++||+++.... ...+.+|...|.+++|. +. +|++|+.||.|++||+++++++..+..+..
T Consensus 223 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 223 --NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp --TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred --CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 459999999999999999873322 26778999999999994 44 667999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+.++.+. ...++++..++.|++||...... ..... .+...+.. +. .++.+|++|+.||.|++|++.
T Consensus 298 ~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~----~~---~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 298 GIACLQYR-DRLVVSGSSDNTIRLWDIECGAC--LRVLE-GHEELVRC----IR---FDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CEEEEEEE-TTEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEE----EE---CCSSEEEEEETTSCEEEEEHH
T ss_pred cEEEEEeC-CCEEEEEeCCCeEEEEECCCCCE--EEEEe-CCcCcEEE----EE---ecCCEEEEEeCCCcEEEEECC
Confidence 99999874 56888999999999999764322 11111 11222222 22 257899999999999999974
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=223.72 Aligned_cols=270 Identities=11% Similarity=0.062 Sum_probs=190.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQG 625 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~ 625 (847)
+...+.+++|+|||+.++++..+ +|||+..++....... . ...+..+..... +++.|++|++||+.++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM----R--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC----S--CCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec----C--CeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 45567899999999999887766 7999887654322110 0 111122211111 4566789999999987
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEccCCCCeEEEEEcCCCCEEEE--EeCCC
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLAT--SSFDK 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~I~~v~fsp~~~~Las--gs~Dg 702 (847)
+.+..+. |...|.+++|+++ .++++ .|+.|+|||+.++ +.+..+.. ....+++++ .++++ |+.||
T Consensus 92 ---~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 92 ---QDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp ---EEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred ---cEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence 4455554 6779999999876 34444 3789999999987 77666655 445566776 56666 57899
Q ss_pred cEEEEECCCCC--------------c-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEEe-e-
Q 003106 703 TVRVWDADNPG--------------Y-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFK-V- 764 (847)
Q Consensus 703 ~V~iWD~~~~~--------------~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~~-~- 764 (847)
+|+|||+++.. . ++..+.+|...|++|+|+|++. +|++|+.|++ |+|||+++++++..+. +
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~ 238 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRGL 238 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 99999999732 0 2788899999999999999987 6679999998 9999999999999998 4
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccc------------------c--CCCCccccccccccc
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGW------------------Y--GSDEIPAPSWKVSCR 823 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------------------~--~~~~~~~~~w~~~~~ 823 (847)
|...|.++.+.. ...+++++.++.|++|+...........+.. . .........|.
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---- 314 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI---- 314 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES----
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe----
Confidence 888999998875 4578889999999999965322111110000 0 00001122233
Q ss_pred cCCCcEEEEEeCCCeEEEEEcc
Q 003106 824 SCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.++.+|++++.||.+++|++.
T Consensus 315 -~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 315 -SESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp -SSSEEEEEETTTTEEEEEEEE
T ss_pred -CCCCEEEEEeCCCeEEEEEEE
Confidence 257899999999999999863
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-23 Score=222.14 Aligned_cols=267 Identities=9% Similarity=0.025 Sum_probs=201.6
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC-----CCCCCCcEEEEe
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD-----TDPRDAGGRGMD 621 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~-----t~~~d~~v~vwd 621 (847)
.+...+..++|+|||.++++++.+ ++||+.++........+. .+...+.. .+.+++ +++.|+.|++||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee---ecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 456678999999999998886554 899998776211111111 12222322 233332 466799999999
Q ss_pred c-cCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEEccCCCCeEEEEEc
Q 003106 622 V-SQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 622 ~-~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---------~~~~~~l~~h~~~I~~v~fs 689 (847)
+ .++ ....+.+ |...|.+++|++ +++|++|+.|+.|++||+++ ++++.++. |...|++++|+
T Consensus 86 ~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 86 LIGSP----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp SSSSS----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred eccCC----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 9 776 2366778 999999999999 99999999999999999987 77777776 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CCc-eEEEeccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCC------ceEE
Q 003106 690 PSMPRLATSSFDKTVRVWDADN-PGY-SLRTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNG------SCTR 760 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~-~~~-~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~------~~~~ 760 (847)
+++ |++++.|+.|++||+++ ... .......|...|.+++|+| ++. +|++++.||.|++||++.. +.+.
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccce
Confidence 887 99999999999999987 443 3344557888999999999 877 5668999999999999987 7888
Q ss_pred EEeeCCc---------eEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 761 VFKVESF---------CCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 761 ~~~~~~~---------~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
.+..+.. .+.++.+.. ...++++..+|.|++|+...... ...+...+. ..++.+. .++.+|
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~----~~v~~~~---~~~~~l 307 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--IKNFAKFNE----DSVVKIA---CSDNIL 307 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--EEECCCCSS----SEEEEEE---ECSSEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH--hhhhhcccC----CCceEec---CCCCeE
Confidence 8888765 888888764 45688999999999999763322 222211101 2233333 478899
Q ss_pred EEEeCCCe
Q 003106 831 YTGCGDSS 838 (847)
Q Consensus 831 ~sGs~DG~ 838 (847)
++|+.||+
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=230.65 Aligned_cols=239 Identities=16% Similarity=0.170 Sum_probs=191.2
Q ss_pred CCCCCcceEEEecC----C---CeEeecCCC---eEEeCCCCch-----hhccccccccCCC--CCceEE-eee----cC
Q 003106 551 SGTTSKPLMMFGTD----G---AGTLTSPSN---QLWDDKDLEL-----RADMDRLVEDGSL--DDNVES-FLS----HD 608 (847)
Q Consensus 551 ~~~~~~~~v~~s~d----G---~~~~~~~~~---~iWD~~~~~~-----~~~~~~~~~~g~~--d~~v~~-~~s----~d 608 (847)
.+...+..++|+++ | .++++++.+ ++||+.+++. ...+... ... ...+.. .+. ++
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL---DSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS---CTTGGGSCEEEEEEECCC---
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccc---ccccCCCcEEEEEEeeccCCC
Confidence 34556789999999 9 888775544 8999988764 2222111 000 122322 233 33
Q ss_pred C-----CCCCCCcEEEEeccC------Ccee--eEeEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 609 D-----TDPRDAGGRGMDVSQ------GFSF--KEANSV-------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 668 (847)
Q Consensus 609 ~-----t~~~d~~v~vwd~~~------~~~~--~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~ 668 (847)
+ +++.|+.|++||+.+ +... .....+ ..|...|++++|+|++ +|++|+.|+.|+|||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 3 346789999999987 4222 122245 4589999999999999 99999999999999999
Q ss_pred CCceeEEEcc---C---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceEEEecc-------------CCCCe
Q 003106 669 TLKSKTNLEE---H---SSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMG-------------HSASV 726 (847)
Q Consensus 669 ~~~~~~~l~~---h---~~~I~~v~fsp~~~~Lasgs~D---g~V~iWD~~~~~~~~~~~~~-------------h~~~V 726 (847)
+++.+..+.. | ...|++++|+|++++|++++.| +.|++||+++ +..+..+.+ |...|
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE
Confidence 9999999998 9 9999999999999999999999 9999999998 778888888 99999
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe------eC---------------CceEEEEEecCC--------
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------VE---------------SFCCWCVNAMNR-------- 777 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~------~~---------------~~~v~~~~~~~~-------- 777 (847)
.+++|+|++. +|++++.||.|+|||+++++++..+. .+ ...|.++.+...
T Consensus 295 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 295 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 9999999987 56699999999999999999999999 77 888999988876
Q ss_pred ---CEEEEEcCCCcEEEEcCC
Q 003106 778 ---PCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 778 ---~~l~~~~~~g~i~i~d~~ 795 (847)
..++++..++.|++|+..
T Consensus 374 ~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 374 DLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCEEEEEETTTEEEEEEEE
T ss_pred cccceEEEecCCCcEEEEEcC
Confidence 589999999999999853
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=218.95 Aligned_cols=227 Identities=19% Similarity=0.162 Sum_probs=187.3
Q ss_pred CCCCCCcEEEEeccCCc--eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
+++.|++|++||+.+.. ...+...+.+|...|.+++|+||+++|++|+.|+.|++|+............+...+.++.
T Consensus 56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence 67899999999998753 2345678899999999999999999999999999999999999999888888999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
+++++.+|++++.|+.+++||+.........+.+|...|..++|++++. .++++++.|+.|++||+++++++..+..|.
T Consensus 136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 9999999999999999999999874455556678999999999998754 367799999999999999999999999999
Q ss_pred ceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 767 FCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 767 ~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
..|.++.+.. ...++++..++.|++||.......... .+...+....|. + ...+++++.|+.|+||++.
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~----~--~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALCFS----P--NRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECSSCEEEEEEC----S--SSSEEEEEETTEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee----cCCceEEeeecC----C--CCceeeccCCCEEEEEECC
Confidence 9999998764 457888999999999997643322111 112223333332 2 3457778889999999975
Q ss_pred C
Q 003106 846 T 846 (847)
Q Consensus 846 t 846 (847)
+
T Consensus 286 ~ 286 (340)
T 4aow_A 286 G 286 (340)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-22 Score=215.24 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=190.8
Q ss_pred CCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCc
Q 003106 553 TTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 553 ~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~ 626 (847)
...+..++|++++..+++++.+ ++||+.+......+..+ ..+...+..+...+. +++.|+.+++|| .+
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~- 132 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL---IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG- 132 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE---CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch---hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-
Confidence 4567889999999999887655 88999876433322222 123333443322222 677899999999 22
Q ss_pred eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003106 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTV 704 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V 704 (847)
+.+..+..|...|.+++|++ ++++|++++.||.|++|| ..+.+..+.. |...|.+++|+|++. |++++.||.|
T Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 133 --SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp --EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred --cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 56777889999999999998 999999999999999999 4567777777 999999999999997 9999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
++||+++ +..+..+.+|...|++++|+|++ . |++++.||.|++||+++++++..+..+...+.++.+.....++++.
T Consensus 208 ~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 208 KLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp EEEETTT-CCEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred EEEECCc-hhhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEe
Confidence 9999998 78889999999999999999998 3 5589999999999999999999999999999999988777788999
Q ss_pred CCCcEEEEcCCc
Q 003106 785 DAGDIQISDSLF 796 (847)
Q Consensus 785 ~~g~i~i~d~~~ 796 (847)
.++.|++|+...
T Consensus 285 ~dg~i~iw~~~~ 296 (313)
T 3odt_A 285 SDNLVRIFSQEK 296 (313)
T ss_dssp TTSCEEEEESCG
T ss_pred CCCcEEEEeCCC
Confidence 999999999653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=226.74 Aligned_cols=225 Identities=14% Similarity=0.177 Sum_probs=172.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc-eeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~I~~v~f 688 (847)
.|+.|++||+.++. ..... ..+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|++++|
T Consensus 42 ~d~~v~iw~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 42 GTGVIQLYEIQHGD-LKLLR-EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119 (357)
T ss_dssp CCEEEEEEEECSSS-EEEEE-EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred CCcEEEEEeCCCCc-cccee-eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence 38999999999873 22222 2378999999999998 6999999999999999999887 88999999999999955
Q ss_pred ------cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC----CeEEEE----EecCCCeEEEEEeCCCcEEEEECC
Q 003106 689 ------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA----SVMSLD----FHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 689 ------sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~----~V~sl~----fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
++++++|++++.||+|++||+++....+..+..|.+ .|++++ |++++. +|++++.||.|++||++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECc
Confidence 688999999999999999999985547777766654 799998 677876 66699999999999999
Q ss_pred CCceEEEEeeCCceEEEEEec----CCCEEEEEcCCCcEEEEcCCcccceeeec--ccccCCCCccccccccccccCCCc
Q 003106 755 NGSCTRVFKVESFCCWCVNAM----NRPCLWDKLDAGDIQISDSLFINANIFCG--LGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~~g~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+++++.. ..+...+.++.+. ....++++..++.|.+|+........... ....+...+. .+.+.+....
T Consensus 199 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~ 273 (357)
T 3i2n_A 199 NMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVW----QVRHLPQNRE 273 (357)
T ss_dssp TTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEE----EEEEETTEEE
T ss_pred cCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEE----EEEECCCCCc
Confidence 9987544 5667788888887 46788999999999999954322111100 0001222333 3344443233
Q ss_pred EEEEEeCCCeEEEEEcc
Q 003106 829 CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~g 845 (847)
+|++|+.||.|++|++.
T Consensus 274 ~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCcEEEeecC
Confidence 89999999999999975
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=229.44 Aligned_cols=237 Identities=12% Similarity=0.142 Sum_probs=194.0
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCC----------CCCceEEeeecCC---CCCCCC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGS----------LDDNVESFLSHDD---TDPRDA 615 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~----------~d~~v~~~~s~d~---t~~~d~ 615 (847)
+...+..++|+++++.+++++.+ ++||+.+++....+........ ......+.+.+++ +++.++
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 227 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGG
T ss_pred CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC
Confidence 45567899999999988876544 8999988776544322111000 0001111222333 567789
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++ +|
T Consensus 228 ~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 228 AIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp CEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EE
T ss_pred eEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EE
Confidence 9999999976 5566778999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------------------
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------ 757 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------------------ 757 (847)
++++.|+.|++||+++ +..+..+..|...|.+++|+|++. +|++++.||.|+|||+++++
T Consensus 304 ~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP 381 (425)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEE
T ss_pred EEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCccc
Confidence 9999999999999998 778888999999999999999987 56689999999999999888
Q ss_pred --eEEEEeeCCc--eEEEEEecCC-CEEEEEcCCCcEEEEcC
Q 003106 758 --CTRVFKVESF--CCWCVNAMNR-PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 758 --~~~~~~~~~~--~v~~~~~~~~-~~l~~~~~~g~i~i~d~ 794 (847)
++..+..+.. .|.++.+... ..++++..+|.|.+|+.
T Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 382 IPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp CCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred chhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 8899998866 8898888754 46778999999999985
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=231.48 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=189.2
Q ss_pred CCCCcceEEEecC-CCeEeecCC---CeEEeCCCCchhhc----cccccccCCCCCceE-EeeecCC-----CCCCCCcE
Q 003106 552 GTTSKPLMMFGTD-GAGTLTSPS---NQLWDDKDLELRAD----MDRLVEDGSLDDNVE-SFLSHDD-----TDPRDAGG 617 (847)
Q Consensus 552 ~~~~~~~v~~s~d-G~~~~~~~~---~~iWD~~~~~~~~~----~~~~~~~g~~d~~v~-~~~s~d~-----t~~~d~~v 617 (847)
+...+..++|+|+ +..+++++. .++||+........ .........+...+. +.+.+++ +++.|+.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 3456789999998 556666543 48999976211000 000000011111222 2223322 57789999
Q ss_pred EEEeccCCc----eeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEEccCCCCeEEEEEc
Q 003106 618 RGMDVSQGF----SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 618 ~vwd~~~~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~I~~v~fs 689 (847)
++||+.++. .......+.+|...|.+++|+| ++.+|++|+.||.|+|||++++ +.+..+..|...|++|+|+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 999998742 2333567789999999999999 7889999999999999999976 6778888999999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------------
Q 003106 690 PSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------------- 755 (847)
Q Consensus 690 p~~~-~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~------------- 755 (847)
|++. +|++|+.||+|+|||+++....+..+.+|...|++|+|+|+++.+|++++.||.|+|||++.
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 366 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHC
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccC
Confidence 9987 68899999999999999866778899999999999999999988889999999999999987
Q ss_pred -CceEEEEeeCCceEEEEEecCCC--EEEEEcCCCcEEEEcCC
Q 003106 756 -GSCTRVFKVESFCCWCVNAMNRP--CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 -~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~ 795 (847)
...+..+.+|...|.++.+.... .++++..++.|.+|+..
T Consensus 367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 36677778888889999887543 68889999999999854
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-22 Score=217.67 Aligned_cols=223 Identities=10% Similarity=0.105 Sum_probs=182.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+++.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||.|+|||+.+++.+..+. |...|.+++|+
T Consensus 49 ~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 124 (369)
T 3zwl_B 49 SCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFS 124 (369)
T ss_dssp EEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred EEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEc
Confidence 4567899999999876 5677889999999999999999999999999999999999999998887 88899999999
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCC----------ceEEEeccCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 690 PSMPRLATSSFD-----KTVRVWDADNPG----------YSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 690 p~~~~Lasgs~D-----g~V~iWD~~~~~----------~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
|++++|++++.+ +.|++||++... ..+..+..|.. .|.+++|+|++. +|++++.||.|++||
T Consensus 125 ~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d 203 (369)
T 3zwl_B 125 PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYD 203 (369)
T ss_dssp TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEE
T ss_pred cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEE
Confidence 999999999999 999999998632 13455556666 899999999987 556899999999999
Q ss_pred CCC-CceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEE
Q 003106 753 INN-GSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCL 830 (847)
Q Consensus 753 ~~~-~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l 830 (847)
+++ +..+..+..+...+.++.+.. ...++++..++.|.+||........... ....+....|+ + ++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~----~-~~~~l 274 (369)
T 3zwl_B 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVIT----P-LKEFI 274 (369)
T ss_dssp TTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEEC----S-SSSEE
T ss_pred CCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEec----C-CCceE
Confidence 999 788899999999999998764 4578888999999999976433221111 22223333333 3 67889
Q ss_pred EEEeCCC--------------eEEEEEccC
Q 003106 831 YTGCGDS--------------SLSSFIAGT 846 (847)
Q Consensus 831 ~sGs~DG--------------~V~vW~~gt 846 (847)
++++.|+ .|++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EEEECCC-------------CEEEEEETTT
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 9999888 899998753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=224.77 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=171.0
Q ss_pred eeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcC-CCCEEEEEeCCCc
Q 003106 628 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP-SMPRLATSSFDKT 703 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp-~~~~Lasgs~Dg~ 703 (847)
++....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|++++|+| ++++|++++.|++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45677889999999999999999 999999999999999999888877775 6999999999999 6789999999999
Q ss_pred EEEEECCCCCceEEEeccC---CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCC--
Q 003106 704 VRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRP-- 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-- 778 (847)
|++||++. ..+..+..| ...|.+++|+|++. +|++++.|+.|++||+ +++++..+..|...|.++.+....
T Consensus 143 i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCC--CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 99999985 455555444 48899999999987 5669999999999999 577899999999999999887654
Q ss_pred EEEEEcCCCcEEEEcCCccc--ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 779 CLWDKLDAGDIQISDSLFIN--ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++++..++.|++||..... ........ +...+.. +.+.+.++.+|++++.||.|++|++.+
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~----~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNA----AYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEE----EEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEE----EEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 68899999999999966422 11222221 2333333 444444678999999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=220.86 Aligned_cols=209 Identities=19% Similarity=0.205 Sum_probs=163.0
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVR 705 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fsp--~~~~Lasgs~Dg~V~ 705 (847)
..+.+|.+.|++|+|+|++++|++|+.||.|+|||+.++ +.+..+.+|...|++|+|+| ++++|++++.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789999999999999999999999999999999876 46677889999999999999 689999999999999
Q ss_pred EEECCCCC--------ceEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCceEEEEe------------
Q 003106 706 VWDADNPG--------YSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 763 (847)
Q Consensus 706 iWD~~~~~--------~~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~------------ 763 (847)
|||+++.. ..+..+.+|...|.+++|+|+ +. +|++++.||.|++||+++++++..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998732 457788899999999999999 66 56699999999999999887654443
Q ss_pred -eCCceEEEEEecC----CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC---CcEEEEEeC
Q 003106 764 -VESFCCWCVNAMN----RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR---ECCLYTGCG 835 (847)
Q Consensus 764 -~~~~~v~~~~~~~----~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~l~sGs~ 835 (847)
.+...+.++.+.. ...++.+..++.+.+|+............. .+...+....|+ +.. ..+|++|+.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~----p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWA----PSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEEC----CCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEEC----CCCCCcceEEEEEcC
Confidence 3455677777654 567888888888877765433222222211 123333443443 422 179999999
Q ss_pred CCeEEEEEccC
Q 003106 836 DSSLSSFIAGT 846 (847)
Q Consensus 836 DG~V~vW~~gt 846 (847)
||.|++|++.+
T Consensus 239 dg~i~iwd~~~ 249 (351)
T 3f3f_A 239 DGRIRIFKITE 249 (351)
T ss_dssp TSCEEEEEEEE
T ss_pred CCeEEEEeCCC
Confidence 99999999753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=232.32 Aligned_cols=207 Identities=11% Similarity=-0.011 Sum_probs=161.7
Q ss_pred cCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 636 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTD--TLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~--~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++|+|+|++++|++|+.||.|++||+.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 355579999999999996 899999999999999 888888886 567899999999999999999999999999998
Q ss_pred CCCc---eEEEeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEE
Q 003106 711 NPGY---SLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 711 ~~~~---~~~~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
+... .+..+.+|...|++|+|+|+ +. +|++|+.|++|+|||+++++++.. +.+|...|.++.+.+...++++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEE
Confidence 7322 23367789999999999999 65 667999999999999999998887 5578888999887766688899
Q ss_pred cCCCcEEEEcCCcccceeeecccc-----c-------------CCCCccccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 784 LDAGDIQISDSLFINANIFCGLGW-----Y-------------GSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~-----~-------------~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
..++.|++||.............. . ........+..+.+.+ ++.+|++++ .|+.|+||++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEe
Confidence 999999999965433221111100 0 0001111223333344 577888888 9999999998
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=217.80 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=161.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCC-------------------------CEEEEEEcCC----CCEEEEEeC------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTS-------------------------KVICCHFSSD----GKLLATGGH------ 658 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~-------------------------~V~~l~fspd----g~~Lasgs~------ 658 (847)
...|++|+..++..++.+.+++.|.. .|++|+|+|| +.++++++.
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence 56788999888877788888887775 4567777778 777777553
Q ss_pred --------------CCcEEEEECC-CCceeEEEccCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCCceEEEec
Q 003106 659 --------------DKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 659 --------------Dg~V~vwd~~-~~~~~~~l~~h~~~I~~v~fsp---~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~ 720 (847)
|+.|++|++. +++.+..+.+|...++.++|++ ++++|++++.|++|||||+++ +.+++++.
T Consensus 142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~ 220 (356)
T 2w18_A 142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLKKMH 220 (356)
T ss_dssp ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEEEEE
T ss_pred cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEEEEc
Confidence 8899999984 5888888888999999999998 778999999999999999999 88899998
Q ss_pred cCC---CCeEEEEEecCCCeE-----------EEEEeCCCcEEEEECCCCceEEEEe-----eCCceEEEEEecCCCEEE
Q 003106 721 GHS---ASVMSLDFHPNKDDL-----------ICSCDGDGEIRYWSINNGSCTRVFK-----VESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 721 ~h~---~~V~sl~fsp~g~~l-----------l~s~s~Dg~V~iWD~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~ 781 (847)
+|. ..|.+++|+|+|..+ +++|+.|++|++||+++++++.++. +|...+.+..+. ...+.
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lA 299 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAA 299 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-CCEEE
Confidence 754 367788999998754 3678899999999999999887763 333333333333 55678
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..++.|++||...... ...+............|+ + ++.+|++|+.|++||||++
T Consensus 300 SgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafS----P-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWS----G-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEEC----S-SSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEEC----C-CCCEEEEEECCCcEEEecC
Confidence 888999999999764332 222111111111222333 4 7889999999999999986
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=226.44 Aligned_cols=192 Identities=13% Similarity=0.138 Sum_probs=150.7
Q ss_pred cceEEEecCCCeEeec-C----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTS-P----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~-~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
...++|||||++++++ + ..+|||+.+++....+.. .+ ....+.+++|+ ..+.++.+++|+..++ .
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~~---~V~~v~fspdg~~l~s~s~~~~~~~~~~~~-~ 208 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---RG---EVKDLHFSTDGKVVAYITGSSLEVISTVTG-S 208 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---SS---CCCEEEECTTSSEEEEECSSCEEEEETTTC-C
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---CC---ceEEEEEccCCceEEeccceeEEEEEeccC-c
Confidence 4678999999987542 2 238999999876554321 11 12233456665 2334667888888776 3
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----eEEEccCCCCeEEEEEcCCCCEEEEEe
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDK----KAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg----~V~vwd~~~~~~----~~~l~~h~~~I~~v~fsp~~~~Lasgs 699 (847)
.........|...|++|+|+||+++|++++.|+ .|++||+..... ...+.+|...|++|+|+|++++||+|+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 333445678999999999999999999999887 688899876543 345778999999999999999999999
Q ss_pred CCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 700 FDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|++|+|||+++ +.++.++ .+|...|++|+|+|||+ +|+||+.|++|||||+...
T Consensus 289 ~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 NDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 999999999998 7777765 78999999999999988 5679999999999999653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=230.62 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=158.0
Q ss_pred CCCCCCcEEEEeccCCce--eeEeEEeecCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCceeEEEccC
Q 003106 610 TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFSS--------DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~l~fsp--------dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h 679 (847)
+++.|++|++||+.++.. ...+..+.+|.+.|++|+|+| |+++||+|+.|++|+|||+.++..+..+..|
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~ 185 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL 185 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence 577899999999988732 233456789999999999997 8899999999999999999988888888899
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCce------------------------EEEeccCCCCeEEEEEe-c
Q 003106 680 SSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYS------------------------LRTFMGHSASVMSLDFH-P 733 (847)
Q Consensus 680 ~~~I~~v~fsp~~~-~Lasgs~Dg~V~iWD~~~~~~~------------------------~~~~~~h~~~V~sl~fs-p 733 (847)
...|.+|+|+|++. +|++++.|++|+|||+++.... .....+|...|.++.|. +
T Consensus 186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence 99999999999875 7999999999999999873211 11224678889999997 6
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-------------------c--CCCEEEEEcCCCcEEEE
Q 003106 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-------------------M--NRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 734 ~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-------------------~--~~~~l~~~~~~g~i~i~ 792 (847)
++. .|++++.|++|++||++.+.....+..+...+..+.+ . +...+..+..+|.|++|
T Consensus 266 dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 266 DGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp TTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred CCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 766 5669999999999999988777666555443332221 1 22345677889999999
Q ss_pred cCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 793 DSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 793 d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
|......... .. .+...+.. +.+.+ ++.+|++++.||.+.+..+|+
T Consensus 345 d~~~~~~~~~-~~--~~~~~V~s----vafsp-dG~~LA~as~~Gv~lvrL~gf 390 (393)
T 4gq1_A 345 NTYEKDSNSI-PI--QLGMPIVD----FCWHQ-DGSHLAIATEGSVLLTRLMGF 390 (393)
T ss_dssp ETTCTTCCEE-EE--ECSSCEEE----EEECT-TSSEEEEEESSEEEEEEEGGG
T ss_pred ECCCCcEEEE-ec--CCCCcEEE----EEEcC-CCCEEEEEeCCCeEEEEEeCc
Confidence 9654332221 11 12223344 44445 789999999988766666553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=221.67 Aligned_cols=236 Identities=17% Similarity=0.264 Sum_probs=191.1
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~ 624 (847)
.+...+.+++|+|||.++++++.+ +|||+.+++....+.. +...+.++..... +++.|+.+++||...
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~------h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS------HSARVGSLSWNSYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------CSSCEEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC------CCCceEEEeeCCCEEEEEeCCCceeEeeecc
Confidence 345568899999999999887655 8999998876554321 2333443322222 678899999999886
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEccCCCCeEEEEEcCCCC-EEEEE-
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMP-RLATS- 698 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----~~~~l~~h~~~I~~v~fsp~~~-~Lasg- 698 (847)
. ...+.++.+|...|.++.|++++++|++++.|+.|+|||+.+++ .+..+..|...|.+++|+|.+. .|+++
T Consensus 219 ~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~ 296 (420)
T 4gga_A 219 A--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296 (420)
T ss_dssp S--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred c--ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence 4 25567789999999999999999999999999999999998654 4567778999999999999765 45544
Q ss_pred -eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 699 -SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 699 -s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
+.|++|+|||+++ +.++..+..| ..|.++.|++++..++++++ .|+.|+|||+++++++..+.+|...|.++++..
T Consensus 297 gs~D~~I~iwd~~t-~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 297 GTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp CTTTCEEEEEETTT-TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ecCCCEEEEEeCCc-cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 4799999999998 7777777655 56999999999987775443 689999999999999999999999999999874
Q ss_pred -CCEEEEEcCCCcEEEEcCCc
Q 003106 777 -RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 777 -~~~l~~~~~~g~i~i~d~~~ 796 (847)
...|++++.|+.|++|+...
T Consensus 375 dg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 375 DGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEecCCeEEEEECCC
Confidence 45788999999999999653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=218.58 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=175.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCceeEEEcc--CCCCeEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHT-DTLKSKTNLEE--HSSLITD 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~-~~~~~~~~l~~--h~~~I~~ 685 (847)
+++.|+.|++||+.++........+.+|...|++++|+++++ +|++|+.||.|++||+ .+++. ..+.+ |...|++
T Consensus 28 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICR 106 (342)
T ss_dssp EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEE
T ss_pred EEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEE
Confidence 566789999999998754445566779999999999999999 9999999999999999 77655 67788 9999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-C
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-G 756 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~--------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~ 756 (847)
++|+| +++|++++.|+.|++||+++. ..++..+. |...|.+++|++++ +++++.|+.|++||+++ +
T Consensus 107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCT
T ss_pred EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccc
Confidence 99999 999999999999999998751 23344444 88999999999885 66889999999999998 5
Q ss_pred ce--EEEEeeCCceEEEEEecC--CCEEEEEcCCCcEEEEcCCcc-----cceeeecccccC---CCCcccccccccccc
Q 003106 757 SC--TRVFKVESFCCWCVNAMN--RPCLWDKLDAGDIQISDSLFI-----NANIFCGLGWYG---SDEIPAPSWKVSCRS 824 (847)
Q Consensus 757 ~~--~~~~~~~~~~v~~~~~~~--~~~l~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~---~~~~~~~~w~~~~~~ 824 (847)
.. ......+...+.++.+.. ...++.+..+|.+.+|+.... .........+.. .......++.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 53 334445677788888774 678889999999999986543 111111111110 001111233344444
Q ss_pred CCCcEEEEEeCCCeEEEEEccC
Q 003106 825 CRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~gt 846 (847)
++.+|++|+.||.|++|++.+
T Consensus 262 -~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 262 -RHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp -TTCCEEEEETTSCEEEEETTT
T ss_pred -CCCEEEEecCCceEEEEcCcc
Confidence 578899999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=223.66 Aligned_cols=226 Identities=16% Similarity=0.225 Sum_probs=176.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEc-------------cCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------EHS 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-------------~h~ 680 (847)
..+++|++..+ +....+.+|.+.|++|+|+| ++++|++|+.||.|+|||+.++.....+. +|.
T Consensus 23 ~~~~v~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELN---KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEEC---TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccC---cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 34566666644 45566788999999999999 99999999999999999999876655543 599
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCc
Q 003106 681 SLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 681 ~~I~~v~fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
..|++++|+| ++.+|++++.||.|++||+++ +..+..+. +...+.++.|++.+. .++++++.|+.|++||+++++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999999999 778999999999999999998 66666665 778899999998643 277799999999999999999
Q ss_pred eEEEEeeCCceEEEEEecCCC--EEEEEcCCCcEEEEcCCcccceeeeccccc---------CCCCccccccccccccCC
Q 003106 758 CTRVFKVESFCCWCVNAMNRP--CLWDKLDAGDIQISDSLFINANIFCGLGWY---------GSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~w~~~~~~~~ 826 (847)
++..+..+...+.++.+.... .++++..++.|++|+............... ........+..+.+.+ +
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 256 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-D 256 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-T
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-C
Confidence 999999999999999887554 578999999999999754332222111000 0011122233344444 6
Q ss_pred CcEEEEEeCCCeEEEEEccC
Q 003106 827 ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+|++|+.||.|++|++.+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEecCCCeEEEEECCC
Confidence 78999999999999999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=219.25 Aligned_cols=215 Identities=17% Similarity=0.265 Sum_probs=157.9
Q ss_pred eeeEeEEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCC-Ccee-EEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSD---GKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
.++.+..+.+|.+.|+||+|+|+ |++|++|+.||.|+|||+++ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 44667778899999999999998 69999999999999999996 5554 7788999999999999999999999999
Q ss_pred CcEEEEECCCCCceEEEeccCCCCeEEEEE--ecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC---
Q 003106 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN--- 776 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h~~~V~sl~f--sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~--- 776 (847)
|+|+|||+++ +..+. +.+|...|++++| ++++. +|++++.||.|++||+++++++..+..+...+ ++.+..
T Consensus 108 g~v~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~ 183 (368)
T 3mmy_A 108 KTAKMWDLSS-NQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY-CADVIYPMA 183 (368)
T ss_dssp SEEEEEETTT-TEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEE-EEEEETTEE
T ss_pred CcEEEEEcCC-CCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCce-EEEecCCee
Confidence 9999999997 55444 5679999999999 77765 66799999999999999998887777554211 111110
Q ss_pred --------------------------------------------CCEEEEEcCCCcEEEEcCCcccc-e-eeecccccCC
Q 003106 777 --------------------------------------------RPCLWDKLDAGDIQISDSLFINA-N-IFCGLGWYGS 810 (847)
Q Consensus 777 --------------------------------------------~~~l~~~~~~g~i~i~d~~~~~~-~-~~~~~~~~~~ 810 (847)
...++.+..++.|.+|+...... . ......+...
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 11166777777777777553321 0 1111111000
Q ss_pred ------CCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 811 ------DEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 811 ------~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
......+..+.+.+ ++.+|++|+.||.|++|++.+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTT
T ss_pred cccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCC
Confidence 00000233333444 578899999999999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=217.85 Aligned_cols=275 Identities=8% Similarity=-0.043 Sum_probs=197.2
Q ss_pred cceEEEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
...++|+|+++.+++++. .++||+.+++....+......+ ....+. +.+.+++ ++..++.|++||+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-- 201 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-- 201 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--
Confidence 346789997666666543 4899999887654222111111 122222 2223333 5667899999999876
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-------
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------- 699 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------- 699 (847)
+.+..+..|...+.+++|+|++++|+++ +.|+.|++||+++++.+..+..+ ..+.+++|+|++++|++++
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 202 -AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp -CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred -eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence 4566777899999999999999988554 47999999999999988887654 4599999999999999888
Q ss_pred -CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCC-
Q 003106 700 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR- 777 (847)
Q Consensus 700 -~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~- 777 (847)
.|+.|++||+++ +..+..+ .|...+.+++|+|+++.++++++.|+.|++||+++++++..+. +...+.++.+...
T Consensus 280 ~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 280 SGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp SCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred cCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence 588999999997 5555554 4666899999999998888898999999999999999888876 4455667776644
Q ss_pred CEEEEEcC---------------CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe-CCCeEEE
Q 003106 778 PCLWDKLD---------------AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-GDSSLSS 841 (847)
Q Consensus 778 ~~l~~~~~---------------~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-~DG~V~v 841 (847)
..++.+.. +|.|.+|+...... ...... ...+ +.+.+.+ ++.+|++++ .|+.|++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~--~~~~----~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA--GNQP----TGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC--SSSE----EEEEECT-TSCEEEEEETTTTEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC--CCCC----ceEEEcC-CCCEEEEEECCCCeEEE
Confidence 35666655 46899999653322 211111 1222 3333334 566777666 5999999
Q ss_pred EEccCC
Q 003106 842 FIAGTY 847 (847)
Q Consensus 842 W~~gty 847 (847)
|++..|
T Consensus 428 ~~~~~~ 433 (433)
T 3bws_A 428 YRRDGF 433 (433)
T ss_dssp EEETTC
T ss_pred EEecCC
Confidence 998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-22 Score=252.94 Aligned_cols=232 Identities=21% Similarity=0.306 Sum_probs=187.5
Q ss_pred EeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc
Q 003106 603 SFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 603 ~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
+.+++++ +++.|++|++||+.++ +.+..+.+|.+.|++++|+||+++|++|+.|++|+|||+.+++.+.++.+
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 697 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 697 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 3455555 5778999999999977 56778889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 679 HSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 679 h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|...|++++|+++ +.+|++|+.|++|++||+++ +.++.++.+|...|++++|+|++. +|++++.||+|++||++++
T Consensus 698 ~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGT
T ss_pred CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCC
Confidence 9999999999994 55899999999999999998 788899999999999999999988 5669999999999999999
Q ss_pred ceEEEEeeCC-------------ceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccc
Q 003106 757 SCTRVFKVES-------------FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 757 ~~~~~~~~~~-------------~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
++...+.... ..+.++.+......+....++.+.+|+........... ..+...+....| .
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~v~~~~~----s 849 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYCDF----S 849 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE--CSSSSCCCEEEE----C
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc--CCCCCceEEEEE----c
Confidence 8887775332 24556666655555555567899999966433222221 112233333333 3
Q ss_pred cCCCcEEEEEeCCCeEEEEEccC
Q 003106 824 SCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 824 ~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+ ++.++++|+.||.|++|++.+
T Consensus 850 p-~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 850 P-YDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp S-STTEEEEECSSSCEEEEETTT
T ss_pred C-CCCEEEEEeCCCeEEEEEcCC
Confidence 4 688999999999999999854
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=219.85 Aligned_cols=222 Identities=9% Similarity=-0.025 Sum_probs=164.7
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEEc-cC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSKTNLE-EH 679 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l~-~h 679 (847)
+++.|+.|++||+.++... ..+. ...|.++.|+|+ |++|+.|++|++|+.+ +++.+..+. .|
T Consensus 53 sg~~Dg~v~iwd~~~~~~~---~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 53 CRCEDGALHFTQLKDSKTI---TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEETTEEEEEEESSSSCE---EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred EECCCCcEEEEECCCCcEE---EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 5678999999999987433 3333 466888899988 9999999999999765 555455554 67
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 680 SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 680 ~~~I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
...|.+++|+| ++++|++++.||+|++||+++ +..+..+ ..|...|++++|+|++. +|++|+.||.|+|||++++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCT
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC
Confidence 78999999999 999999999999999999998 5666655 34566899999999987 6779999999999999999
Q ss_pred ceE-EEEee-CCceEEEEEecCCC-EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE
Q 003106 757 SCT-RVFKV-ESFCCWCVNAMNRP-CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 757 ~~~-~~~~~-~~~~v~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG 833 (847)
+++ ..+.. |...|.++.+.... .++++. ++.|++||...............+...+.. ..+.+.+ ++.+|++|
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~g~~l~~~ 278 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT--VTYDIDD-SGKNMIAY 278 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC--EEEEECT-TSSEEEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc--eEEEECC-CCCEEEEe
Confidence 988 88888 89999999987654 555666 559999997643321111000000011111 1122233 67889999
Q ss_pred eC-CCeEEEEEcc
Q 003106 834 CG-DSSLSSFIAG 845 (847)
Q Consensus 834 s~-DG~V~vW~~g 845 (847)
+. |+.|+||++.
T Consensus 279 s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 279 SNESNSLTIYKFD 291 (343)
T ss_dssp ETTTTEEEEEEEC
T ss_pred cCCCCcEEEEEEc
Confidence 88 9999999873
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=215.67 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=160.6
Q ss_pred CCCCCcceEEEecC----CCeEeecCCC-eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCC
Q 003106 551 SGTTSKPLMMFGTD----GAGTLTSPSN-QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQG 625 (847)
Q Consensus 551 ~~~~~~~~v~~s~d----G~~~~~~~~~-~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~ 625 (847)
-+...+.+++|+|| +..++.++.. ++|++.++++.. . . ..+.|+.|++|++...
T Consensus 109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~-------s---------s-----~~g~d~~V~~~~~s~d 167 (356)
T 2w18_A 109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVS-------S---------S-----GTLSDQQVEVMTFAED 167 (356)
T ss_dssp SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEE-------E---------E-----SSSTTCEEEEEEECTT
T ss_pred ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEE-------e---------c-----ccCCCCcEEEEEECCC
Confidence 33445677888888 7777765533 677664332211 0 0 1346888999998542
Q ss_pred ceeeEeEEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEccCC---CCeEEEEEcCCCCEE----
Q 003106 626 FSFKEANSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS---SLITDVRFSPSMPRL---- 695 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~---~~I~~v~fsp~~~~L---- 695 (847)
.+.+..+.+|...++.++|++ ++++||+|+.|++|+|||++++++++++.+|. ..|.+++|+|++.++
T Consensus 168 --G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 168 --GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp --SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred --CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence 256667789999999999999 78999999999999999999999999998754 467888999999876
Q ss_pred --------EEEeCCCcEEEEECCCCCceEEEe-----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 696 --------ATSSFDKTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 696 --------asgs~Dg~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
++|+.|++|++||..+ +..+.++ .+|...+.+.+++ +. ++++++.|++|+|||+++++++.++
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp ------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEE
T ss_pred cCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEe
Confidence 5678899999999998 6666655 4777666555555 44 6789999999999999999999999
Q ss_pred eeCCceEE-EEEecC-CCEEEEEcCCCcEEEEc
Q 003106 763 KVESFCCW-CVNAMN-RPCLWDKLDAGDIQISD 793 (847)
Q Consensus 763 ~~~~~~v~-~~~~~~-~~~l~~~~~~g~i~i~d 793 (847)
.+|...+. ++.+.. ...+++++.|+.|++|+
T Consensus 322 ~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 98876544 466654 56788999999999998
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=220.67 Aligned_cols=278 Identities=17% Similarity=0.152 Sum_probs=181.2
Q ss_pred CCcceEEEecCC--CeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCcee
Q 003106 554 TSKPLMMFGTDG--AGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 554 ~~~~~v~~s~dG--~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~ 628 (847)
..+..++|+|++ ..+++++.+ ++||+.+.........+.. .++.+... .......-..+.-.+.. ...
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~---~~g~~~~~--~~~~~~~~~~~~~~~~~--~~~ 166 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKE---EDGRYRDP--TTVTTLRVPVFRPMDLM--VEA 166 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----------C--CCCCSCCCCEEEEEEEE--EEE
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccC---ccccccCc--ccccceEeccccchhee--eec
Confidence 567899999998 667665544 8999977544321111100 00000000 00000000000101100 011
Q ss_pred eEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeE-------EEccCCCCeEEEEEcCCC-CEEEEE
Q 003106 629 KEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKT-------NLEEHSSLITDVRFSPSM-PRLATS 698 (847)
Q Consensus 629 ~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~-------~l~~h~~~I~~v~fsp~~-~~Lasg 698 (847)
..... ..+|...|++++|+|++++|++| .|++|+|||+++ ++.+. .+.+|...|++++|+|++ ++|++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence 22333 36899999999999999999999 799999999994 44444 256899999999999998 899999
Q ss_pred eCCCcEEEEECCCCCce----EEEeccCCC------------CeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEE
Q 003106 699 SFDKTVRVWDADNPGYS----LRTFMGHSA------------SVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV 761 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~----~~~~~~h~~------------~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~ 761 (847)
+.||+|+|||+++ +.. +..+.+|.. .|.+++|+|++. +|++++. +.|+|||+++ ++++..
T Consensus 246 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 246 SSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp ETTSCEEEEETTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCC
T ss_pred eCCCeEEEEECcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccce
Confidence 9999999999998 444 688888876 899999999987 4558887 9999999997 888888
Q ss_pred EeeCCceEE---------------EEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccc------------------
Q 003106 762 FKVESFCCW---------------CVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGW------------------ 807 (847)
Q Consensus 762 ~~~~~~~v~---------------~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~------------------ 807 (847)
+..|...+. .+.+. +...+++++.++.|++|+........+.....
T Consensus 323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence 887754221 13433 45678899999999999966433222111000
Q ss_pred -------cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 -------YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 -------~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.........++.+.+++ ++.+|++++.|+ +++|..
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 00001122344455556 678999998887 666654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=212.49 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=163.0
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEE--cC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f--sp 690 (847)
.|+.|++||+.+. .......+.+|...|++++|+|++++|++|+.||.|+|||+++++.+. +..|...|++++| ++
T Consensus 62 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 62 WANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS
T ss_pred CCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC
Confidence 4566777887763 223336678899999999999999999999999999999999888766 5579999999999 89
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------------------------------------CCeEEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------------------------------------ASVMSL 729 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------------------------------------~~V~sl 729 (847)
++++|++++.||.|++||+++ +..+..+..+. ..+.++
T Consensus 140 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (368)
T 3mmy_A 140 NYSCVMTGSWDKTLKFWDTRS-SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218 (368)
T ss_dssp SCEEEEEEETTSEEEEECSSC-SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred CCCEEEEccCCCcEEEEECCC-CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence 999999999999999999997 55555554332 233444
Q ss_pred EEecCCC---eEEEEEeCCCcEEEEECCCC---ceEEEEeeCCc------------eEEEEEecC-CCEEEEEcCCCcEE
Q 003106 730 DFHPNKD---DLICSCDGDGEIRYWSINNG---SCTRVFKVESF------------CCWCVNAMN-RPCLWDKLDAGDIQ 790 (847)
Q Consensus 730 ~fsp~g~---~ll~s~s~Dg~V~iWD~~~~---~~~~~~~~~~~------------~v~~~~~~~-~~~l~~~~~~g~i~ 790 (847)
++.++.. ..+++++.||.|++||++.. ..+..+..+.. .+.++.+.. ...++++..+|.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 4444332 23679999999999999987 66777877765 588888765 45788999999999
Q ss_pred EEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 791 ISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 791 i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
+||...... ...+. .+...+.. +.+.+ ++.+|++|+.|+.++.|+
T Consensus 299 iwd~~~~~~--~~~~~-~~~~~v~~----~~~s~-~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 299 FWDKDARTK--LKTSE-QLDQPISA----CCFNH-NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEETTTTEE--EEECC-CCSSCEEE----EEECT-TSSCEEEEECCCSTTCGG
T ss_pred EEECCCCcE--EEEec-CCCCCceE----EEECC-CCCeEEEEeccccccccc
Confidence 999764322 22211 12223333 33334 678899999998665554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=201.51 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=169.5
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.|++|++||+.++ .......+.+|...|++|+|+|++++|++|+.||+|+|||+++++.+..+.+|...+.++.+.
T Consensus 42 g~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~-- 118 (318)
T 4ggc_A 42 ALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-- 118 (318)
T ss_dssp EETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--
T ss_pred EeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--
Confidence 35889999999988 333344556888999999999999999999999999999999999999999999998887665
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce----EEEEeeCCc
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~----~~~~~~~~~ 767 (847)
+..|++++.++.+++|+.......+..+.+|...+..+.|++++. +|++++.|++|+|||+++++. ......+..
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 678999999999999999987778888999999999999999987 556999999999999998753 344555666
Q ss_pred eEEEEEecC--CCE--EEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE--EeCCCeEEE
Q 003106 768 CCWCVNAMN--RPC--LWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT--GCGDSSLSS 841 (847)
Q Consensus 768 ~v~~~~~~~--~~~--l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s--Gs~DG~V~v 841 (847)
.+.++.+.. ... +..+..++.|++|+........... ....+....|. + .+..+++ |+.||.|+|
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~----~-~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWS----P-HYKELISGHGFAQNQLVI 268 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEE----T-TTTEEEEEECTTTCCEEE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeec----c-cccceEEEEEcCCCEEEE
Confidence 677666543 223 3456677889999965433222211 12222222222 3 3333443 458999999
Q ss_pred EEccC
Q 003106 842 FIAGT 846 (847)
Q Consensus 842 W~~gt 846 (847)
|++.+
T Consensus 269 wd~~~ 273 (318)
T 4ggc_A 269 WKYPT 273 (318)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=239.17 Aligned_cols=209 Identities=18% Similarity=0.152 Sum_probs=166.9
Q ss_pred EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003106 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVW 707 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fsp~--~~~Lasgs~Dg~V~iW 707 (847)
..+.+|.+.|+|++|+|++++|++|+.||+|+|||+. +++.+..+.+|.+.|++|+|+++ +++|++|+.||+|+||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998 56778889999999999999988 8999999999999999
Q ss_pred ECCCCCc--eEEEeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEEecC-----
Q 003106 708 DADNPGY--SLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVNAMN----- 776 (847)
Q Consensus 708 D~~~~~~--~~~~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~~~~----- 776 (847)
|+++ +. .+..+.+|...|++++|+|+ +. ++++|+.||.|++||++++. ....+..+...|.++.+..
T Consensus 83 d~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 83 KEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEET-TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred ECCC-CcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 9998 44 67778899999999999999 66 66799999999999999873 4556778888899998876
Q ss_pred ---------CCEEEEEcCCCcEEEEcCCcccceeee-cccccCCCCccccccccccccCC--CcEEEEEeCCCeEEEEEc
Q 003106 777 ---------RPCLWDKLDAGDIQISDSLFINANIFC-GLGWYGSDEIPAPSWKVSCRSCR--ECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 777 ---------~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~--~~~l~sGs~DG~V~vW~~ 844 (847)
...++++..+|.|++||.......... .....+...+.. +.+.+.. +.+|++|+.||+|++|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~----l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD----VAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE----EEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE----EEeccCCCCCCEEEEEecCCEEEEecC
Confidence 567889999999999996543221111 111112333333 3444533 789999999999999998
Q ss_pred cC
Q 003106 845 GT 846 (847)
Q Consensus 845 gt 846 (847)
.+
T Consensus 237 ~~ 238 (753)
T 3jro_A 237 DN 238 (753)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-20 Score=205.17 Aligned_cols=250 Identities=13% Similarity=0.037 Sum_probs=182.2
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
.++||+.+++....+.. ......+.+++++ ++..++.|++||+.++ +.+..+..+. .|.+++|+|
T Consensus 14 v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~sp 83 (391)
T 1l0q_A 14 ISVIDVTSNKVTATIPV------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSP 83 (391)
T ss_dssp EEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECT
T ss_pred EEEEECCCCeEEEEeec------CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECC
Confidence 48999998876554321 1112233344444 3447899999999877 4555555554 899999999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEeccCCCCe
Q 003106 649 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASV 726 (847)
Q Consensus 649 dg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V 726 (847)
++++|+++ +.|+.|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+++ +..+..+..| ..+
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~-~~~ 160 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSVG-RSP 160 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECC-SSE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEecC-CCc
Confidence 99988654 46799999999999998888755 468999999999977 6778899999999998 6777777655 557
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEc---CCCcEEEEcCCcccceee
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKL---DAGDIQISDSLFINANIF 802 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~---~~g~i~i~d~~~~~~~~~ 802 (847)
.+++|+|+++.++++++.|+.|++||+++++++..+..+ ..+.++.+.. ...++.+. .++.|.+||...... .
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--~ 237 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--T 237 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--E
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--E
Confidence 999999999988788889999999999999988877654 4566666654 44667666 688999999654322 1
Q ss_pred ecccccCCCCccccccccccccCCCc-EEEEEeCCCeEEEEEccC
Q 003106 803 CGLGWYGSDEIPAPSWKVSCRSCREC-CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 803 ~~~~~~~~~~~~~~~w~~~~~~~~~~-~l~sGs~DG~V~vW~~gt 846 (847)
..... .... ..+.+.+ ++. ++++++.|+.|++|++.+
T Consensus 238 ~~~~~--~~~~----~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 238 ARIPV--GPDP----AGIAVTP-DGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEC--CSSE----EEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred EEEec--CCCc----cEEEEcc-CCCEEEEEcCCCCEEEEEECCC
Confidence 11111 1112 2233334 454 457889999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=237.17 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=177.5
Q ss_pred EeeecCC----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc
Q 003106 603 SFLSHDD----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE 678 (847)
Q Consensus 603 ~~~s~d~----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~ 678 (847)
+.+++++ +++.|+.|++||..+. +.... ..|...|++|+|+| +++|++++.|++|+|||+++++++.++.
T Consensus 23 lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 23 AAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EEEETTTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 3455555 6788999999998765 23333 35888999999999 8899999999999999999999998886
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE-----------EEeccCCCCeEEEEEecCCCeEEEEEeCCCc
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-----------RTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~-----------~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~ 747 (847)
|...|++++|+|++++|++|+.||+|++||+++ +.+. ..+.+|.+.|++|+|+|++..+|++|+.||.
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT-TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC-CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 778999999999999999999999999999997 4432 2346799999999999986667889999999
Q ss_pred EEEEECCCCceEEEEeeC------------------CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecc---
Q 003106 748 IRYWSINNGSCTRVFKVE------------------SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGL--- 805 (847)
Q Consensus 748 V~iWD~~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~--- 805 (847)
| +||+++++++..+..+ ...|.++.+.. ...+.++..++.|++||............
T Consensus 176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~ 254 (902)
T 2oaj_A 176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET 254 (902)
T ss_dssp E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence 9 9999999999888765 35688888774 45788999999999999764322111111
Q ss_pred -ccc-----------CCCCccccccccccccCCCcEEEEEeCC-----CeEEEEEcc
Q 003106 806 -GWY-----------GSDEIPAPSWKVSCRSCRECCLYTGCGD-----SSLSSFIAG 845 (847)
Q Consensus 806 -~~~-----------~~~~~~~~~w~~~~~~~~~~~l~sGs~D-----G~V~vW~~g 845 (847)
.+. +...+....|.....+.+..+|++|+.| ..|++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 010 0112333444322223223678888776 378888853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=216.64 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=154.0
Q ss_pred eEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eec--------CC----CCCCCCcEEEEe
Q 003106 558 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSH--------DD----TDPRDAGGRGMD 621 (847)
Q Consensus 558 ~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~--------d~----t~~~d~~v~vwd 621 (847)
...+.+++..+++++.+ +|||+.+++....... .....+.+.|... +.+ |+ +++.|++|++||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~-~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL-GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE-CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee-cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 44556666667665544 9999988765332111 1111233334332 221 22 788999999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEE-------------------------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTN------------------------- 675 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~------------------------- 675 (847)
+.++ .++..+..|...|.+++|+|++ .+|++|+.|++|+|||+.+++....
T Consensus 173 ~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 173 LTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred CCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 9876 5666777899999999999987 4899999999999999987654332
Q ss_pred EccCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEE------------------Eec-CC
Q 003106 676 LEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD------------------FHP-NK 735 (847)
Q Consensus 676 l~~h~~~I~~v~fs-p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~------------------fsp-~g 735 (847)
..+|...|.+++|+ ++++.|++++.|++|+|||+.. +.....+..|...+..+. |++ .+
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM 328 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence 23577889999987 7999999999999999999987 444444444444443333 333 34
Q ss_pred CeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 736 DDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 736 ~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
..++++|+.||+|+|||+.+++++..+..+...|.++++..+..+++...++.+.+|.
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5567788899999999999999999998999999999988776655555555566654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=215.13 Aligned_cols=220 Identities=7% Similarity=-0.032 Sum_probs=166.3
Q ss_pred CCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
|......++|+||| .+++|++.+++.... ......+....+.+++|+ +++.|+.+++||...
T Consensus 51 h~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~----~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--- 116 (588)
T 2j04_A 51 NSKNLFHVKEFPLE-------FENKLDFELAQQNGL----LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--- 116 (588)
T ss_dssp BGGGTEEEEEECCC-------CCCTTTTSCCCSSCS----STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---
T ss_pred CCccEEEEEECCCC-------CcceEEEEeCCCceE----eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---
Confidence 44466799999999 355566655542221 111112334455577777 688999999999543
Q ss_pred eeEeEEeecCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------eeEEE----ccCCCCeEEEEEcCC
Q 003106 628 FKEANSVRASTS-----KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-------SKTNL----EEHSSLITDVRFSPS 691 (847)
Q Consensus 628 ~~~~~~l~~h~~-----~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-------~~~~l----~~h~~~I~~v~fsp~ 691 (847)
.+..+. |.. .|.+++|+|||++||+|+.||+|+|||+.++. .+.++ .+|...|.+|+|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555566 665 59999999999999999999999999999875 35676 678889999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCc--eEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSFDKTVRVWDADNPGY--SLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~--~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
| |++++.|++|++||+..... ...++ .+|...|.+|+|+ +. .+++++ |++|++||+.+++......+|...
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 9 88899999999999987332 34566 4788999999999 44 565776 799999999988874444478888
Q ss_pred EEEEEe--cCCC-EEEEEcCCCcEEEEcCC
Q 003106 769 CWCVNA--MNRP-CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 769 v~~~~~--~~~~-~l~~~~~~g~i~i~d~~ 795 (847)
+..+.+ .++. .+..+.++|. ++|...
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 998888 6554 4556666888 888754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-19 Score=196.01 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=166.9
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
+..++.|++||+.++ +.+..+..|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+..+. .|.+++|+
T Consensus 8 ~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 8 NSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred cCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 456889999999877 4555666664 58999999999977 677789999999999999998887665 89999999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
|++++|+++ +.|++|++||+.+ +..+..+..| ..+.+++|+|+++.++++++.|+.|++||+++++++..+..+..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 159 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS- 159 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-
T ss_pred CCCCEEEEEECCCCEEEEEECCC-CeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-
Confidence 999988654 4679999999998 6667776644 56899999999998878999999999999999999988887654
Q ss_pred EEEEEecCC-CEE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe---CCCeEEEEE
Q 003106 769 CWCVNAMNR-PCL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC---GDSSLSSFI 843 (847)
Q Consensus 769 v~~~~~~~~-~~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs---~DG~V~vW~ 843 (847)
+.++.+... ..+ +.+..++.|.+||........... ..... ..+.+.+ ++.+|++++ .|+.|++|+
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~----~~~~~~~-~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAP----SGIAVNP-EGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEE----EEEEECT-TSSEEEEEEECSSCCEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCc----cceEECC-CCCEEEEEecCcCCCcEEEEE
Confidence 456665543 345 466788999999975432211111 11112 2233334 566777776 799999999
Q ss_pred ccC
Q 003106 844 AGT 846 (847)
Q Consensus 844 ~gt 846 (847)
+.+
T Consensus 231 ~~~ 233 (391)
T 1l0q_A 231 TGT 233 (391)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-19 Score=193.77 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=138.3
Q ss_pred cceEEEecCCCeEe-ecCC---CeEEeCCCCchhhccccccccCCCCCceEEe-eecCC-CCCCCCcEEEEeccCC-cee
Q 003106 556 KPLMMFGTDGAGTL-TSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD-TDPRDAGGRGMDVSQG-FSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~-~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~-t~~~d~~v~vwd~~~~-~~~ 628 (847)
...+.+.+++..++ +++. .+|||+.+++....+. +...+..+ +..+. ....++.|++||+.++ ..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence 56677888887764 3333 3899999887655432 11123222 22221 2234788999999876 333
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECCCCc----------------eeEEEccCCCCeEEEEEcC
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLAT--GGHDKKAVLWHTDTLK----------------SKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Las--gs~Dg~V~vwd~~~~~----------------~~~~l~~h~~~I~~v~fsp 690 (847)
.. +.. ....+++++ .+|++ |+.||.|+|||+.++. .+..+.+|...|++|+|+|
T Consensus 134 ~~---~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 134 TD---DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR 205 (355)
T ss_dssp SC---CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred EE---ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence 22 322 445666776 66666 5789999999999765 2788999999999999999
Q ss_pred CCCEEEEEeCCCc-EEEEECCCCCceEEEec-c-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc
Q 003106 691 SMPRLATSSFDKT-VRVWDADNPGYSLRTFM-G-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 691 ~~~~Lasgs~Dg~-V~iWD~~~~~~~~~~~~-~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
++++|++|+.|++ |+|||+++ +.++.++. + |...|++++|+|++. +|++++.|++|+|||++.+.
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 9999999999999 99999998 77888887 5 999999999999987 56699999999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=191.26 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=167.5
Q ss_pred CCCCCCcEEEEeccCCceeeEeE--EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEAN--SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
++..++.|++||+.++....... .+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...+.+++
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 218 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL 218 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE
Confidence 45667899999999874332211 3568999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-------CCCcEEEEECCCCceE
Q 003106 688 FSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-------GDGEIRYWSINNGSCT 759 (847)
Q Consensus 688 fsp~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-------~Dg~V~iWD~~~~~~~ 759 (847)
|+|++++|+++ +.|+.|++||+++ +..+..+..+ ..+.+++|+|+++.+++++. .|+.|++||+++++.+
T Consensus 219 ~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 219 YDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTT-TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 99999988555 4799999999997 6777777654 55999999999986664442 5889999999999877
Q ss_pred EEEeeCCceEEEEEecCCC-EE-EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeC--
Q 003106 760 RVFKVESFCCWCVNAMNRP-CL-WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCG-- 835 (847)
Q Consensus 760 ~~~~~~~~~v~~~~~~~~~-~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~-- 835 (847)
..+.. ...+.++.+.... .+ +.+..++.|.+|+...... ..... ....+.. +.+.+ ++.+|++++.
T Consensus 297 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~~~--~~~~~~~----~~~s~-dg~~l~~~~~~~ 366 (433)
T 3bws_A 297 DTIGP-PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKSIP--VFDKPNT----IALSP-DGKYLYVSCRGP 366 (433)
T ss_dssp EEEEE-EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSSEEE----EEECT-TSSEEEEEECCC
T ss_pred eeccC-CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEEec--CCCCCCe----EEEcC-CCCEEEEEecCC
Confidence 76643 3355666665443 34 5568899999999763222 21111 1122222 33333 4666666665
Q ss_pred -------------CCeEEEEEccC
Q 003106 836 -------------DSSLSSFIAGT 846 (847)
Q Consensus 836 -------------DG~V~vW~~gt 846 (847)
||.|++|++.+
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CccccccccccccceEEEEEECCC
Confidence 68999999854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-18 Score=190.68 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=155.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
.+.|++||+..+ ....+.+|...|.+++|+|||++|++++.|+ .|++||+++++.. .+..|...+.+++|+|
T Consensus 158 ~~~i~i~d~~g~----~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 158 PYELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP 232 (415)
T ss_dssp CEEEEEEETTSC----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred cceEEEEcCCCC----CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence 389999999754 3456777999999999999999999999885 9999999988875 5667888999999999
Q ss_pred CCCEEE-EEeCCCc--EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeC
Q 003106 691 SMPRLA-TSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 691 ~~~~La-sgs~Dg~--V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~ 765 (847)
||++|+ +++.|+. |++||+++ +. +..+..|...+.+++|+|+|+.+++++..++ .|.+||+.+++. ..+..+
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~ 309 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE 309 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTT-CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred CCCEEEEEEecCCCceEEEEECCC-CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC
Confidence 999887 6666655 99999987 44 4677788889999999999987775554455 677779988764 344455
Q ss_pred CceEEEEEecCCC-EEEEEcC---CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCC---e
Q 003106 766 SFCCWCVNAMNRP-CLWDKLD---AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS---S 838 (847)
Q Consensus 766 ~~~v~~~~~~~~~-~l~~~~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG---~ 838 (847)
...+.++.+..+. .++.... ...|.+|+........+ . ....+ +.+.+.+ ++.+|++++.|+ .
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l---~--~~~~~----~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL---S--STFLD----ETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC---C--CSSSC----EEEEECT-TSSEEEEEEEETTEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe---c--CCCCc----CCeEEcC-CCCEEEEEEcCCCccE
Confidence 5667667665443 4444433 24788888653322111 1 11122 3333334 677788877776 7
Q ss_pred EEEEEcc
Q 003106 839 LSSFIAG 845 (847)
Q Consensus 839 V~vW~~g 845 (847)
|++|++.
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=193.26 Aligned_cols=271 Identities=12% Similarity=0.080 Sum_probs=185.0
Q ss_pred EecCCCeEeec---CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEec--cCCceeeEe
Q 003106 561 FGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDV--SQGFSFKEA 631 (847)
Q Consensus 561 ~s~dG~~~~~~---~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~--~~~~~~~~~ 631 (847)
|+++++.+++. +...+||..++++...+.. + .. .-.+.+++|+ +++.++.|++||+ .++ +.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g-~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----G-YA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----S-TT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----C-cc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEE
Confidence 34555544443 2348899998877654331 1 11 1122355555 4556799999999 554 566
Q ss_pred EEeecCCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCceeEEEccC-----------CCCeEEEEEcCCCCE-
Q 003106 632 NSVRASTSKVICCHFSS----DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-----------SSLITDVRFSPSMPR- 694 (847)
Q Consensus 632 ~~l~~h~~~V~~l~fsp----dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h-----------~~~I~~v~fsp~~~~- 694 (847)
.++. +...+..++|+| ||++|++++. +++|+|||..+++++.++..+ ...+.+|.|++++..
T Consensus 216 ~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 216 AEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6666 455689999999 9999999984 899999999999999888642 237899999998775
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee----CCceEE
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV----ESFCCW 770 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~----~~~~v~ 770 (847)
+++...+++|.+||+.+..........+...+.++.|+|+|+++++++..+++|.+||+++++++..+.. |.....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 4666789999999998743332222246677889999999998887887899999999999999998875 332223
Q ss_pred EEEecCCCEEEEEc--CCCcEEEEcCCccc-----ceeeecccccCCCCccccccccccccCCCcEEEEEe-------CC
Q 003106 771 CVNAMNRPCLWDKL--DAGDIQISDSLFIN-----ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC-------GD 836 (847)
Q Consensus 771 ~~~~~~~~~l~~~~--~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs-------~D 836 (847)
.+.......+|... .++.|.+|+..... ..+....... . ...+.+.+++ ++..|++++ .|
T Consensus 375 ~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g----~~~~~v~~~p-dg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 375 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-G----GGSLFIKTHP-KSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-C----SCCCCEECCT-TCCEEEECCTTCSSHHHH
T ss_pred ccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-C----CCceEEEcCC-CCCcEEEecCCCCCcccC
Confidence 33323335566554 56899999965411 1111111111 1 1223344455 688899887 37
Q ss_pred CeEEEEEccCC
Q 003106 837 SSLSSFIAGTY 847 (847)
Q Consensus 837 G~V~vW~~gty 847 (847)
++|+|||+.++
T Consensus 449 ~~v~v~d~~~~ 459 (543)
T 1nir_A 449 QSVAVFDLKNL 459 (543)
T ss_dssp TCEEEEETTCT
T ss_pred ceEEEEECCCC
Confidence 89999998763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-17 Score=185.38 Aligned_cols=200 Identities=14% Similarity=0.069 Sum_probs=142.5
Q ss_pred CcceEEEecCCCeEeecCCC--eEEeCCCCchh-------hcccccc--ccCCCCCceEE-eeecCC--------CCCCC
Q 003106 555 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELR-------ADMDRLV--EDGSLDDNVES-FLSHDD--------TDPRD 614 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~-------~~~~~~~--~~g~~d~~v~~-~~s~d~--------t~~~d 614 (847)
....+++++++..+++++.+ ++|+....... ....... ....+...+.. .+++++ +++.|
T Consensus 38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 35678888888888776655 55654321100 0000000 00111222332 344444 36679
Q ss_pred CcEEEEeccCC--------ceeeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE
Q 003106 615 AGGRGMDVSQG--------FSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 685 (847)
Q Consensus 615 ~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~ 685 (847)
+.|++||+.++ ..+..+..+.+|...|++|+|+|+ +.+|++|+.||+|+|||++++..+....+|...|++
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999998754 223345667789999999999997 899999999999999999988777777789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeCCCc------EEEEE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGE------IRYWS 752 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~Dg~------V~iWD 752 (847)
++|+|+|++|++|+.||+|++||++ +.....+..| ...|.+++|++++..+++++..||. +++||
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 9999999999999999999999998 2344555433 2379999999987766555656643 89999
Q ss_pred CCCC
Q 003106 753 INNG 756 (847)
Q Consensus 753 ~~~~ 756 (847)
+++.
T Consensus 276 l~~~ 279 (434)
T 2oit_A 276 LPKK 279 (434)
T ss_dssp CCCT
T ss_pred eccC
Confidence 9865
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=171.64 Aligned_cols=230 Identities=11% Similarity=0.083 Sum_probs=169.3
Q ss_pred CcceEEEecCCCeEeecC----------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEE
Q 003106 555 SKPLMMFGTDGAGTLTSP----------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRG 619 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~----------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~v 619 (847)
....++|++||+.+++.. ...+||..+++....+.. +.. ...+.+++++ +...++.|.+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~--~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLK--PFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSC--CCSEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCC--cceEEECCCCCEEEEEecCCCEEEE
Confidence 345789999999876654 236799988876554332 111 1112233333 3345679999
Q ss_pred EeccCCceeeEeEEeecCCC---------CEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 620 MDVSQGFSFKEANSVRASTS---------KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 620 wd~~~~~~~~~~~~l~~h~~---------~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
||+.++ +.+..+..+.. .+.+++|+||+++|++++ .++.|.+||+++++.+..+..+...+.+++|
T Consensus 116 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 116 IDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999887 33444444332 278999999999888776 4789999999999999888767777899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+|++++|++++.++.|.+||+.+ +..+..+.. +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999999999998 666666543 5567889999999998887777779999999999998888876
Q ss_pred CCceEEEEEec-CCCEEEEE-cCCCcEEEEcCCc
Q 003106 765 ESFCCWCVNAM-NRPCLWDK-LDAGDIQISDSLF 796 (847)
Q Consensus 765 ~~~~v~~~~~~-~~~~l~~~-~~~g~i~i~d~~~ 796 (847)
.... .+.+. +...+|.. ..++.|.+||...
T Consensus 272 ~~~~--~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 272 PESL--AVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp SSCC--CEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCCc--eEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 5543 23333 33345544 4688999999653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=171.41 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=174.0
Q ss_pred EEecCCCeEeec----CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeE
Q 003106 560 MFGTDGAGTLTS----PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKE 630 (847)
Q Consensus 560 ~~s~dG~~~~~~----~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~ 630 (847)
+|..++..++.. +...+||..+++....+. .+ . ....+.+++++ ++..++.|.+||+.++.. .
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----~~-~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT----LG-Y-DFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPP--K 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE----CC-C-CEEEEEECSSSCEEEEEESTTCEEEEEECSSSSC--E
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE----cc-C-CcceEEEcCCCCEEEEEeCCCCeEEEEECCCCce--e
Confidence 455555554332 234889999887755432 11 1 11233344444 334477999999988732 1
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE-eCCCc-EE
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKT-VR 705 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~-V~ 705 (847)
...+..+...+.+++|+|||++|+++..++ .|++||+++++.+..+..+ ..+.+++|+|++++|+++ ..++. |+
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEE
Confidence 455666666666699999999999655553 8999999999988887654 457999999999866554 56688 99
Q ss_pred EEECCCCCceE---EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce---EEEEeeCCceEEEEEecCC-C
Q 003106 706 VWDADNPGYSL---RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKVESFCCWCVNAMNR-P 778 (847)
Q Consensus 706 iWD~~~~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~---~~~~~~~~~~v~~~~~~~~-~ 778 (847)
+|+++..+... .........+.+++|+|+|+++++++..++.|++||+++++. +..+..+ ..+..+.+..+ .
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 99998644332 112234456899999999998888888899999999999988 7777654 33445555544 3
Q ss_pred EEEEEc-CCCcEEEEcCCcccceeeeccccc--CCCCccccccccccccCCCcEE-EEEeCCCeEEEEEccC
Q 003106 779 CLWDKL-DAGDIQISDSLFINANIFCGLGWY--GSDEIPAPSWKVSCRSCRECCL-YTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~l-~sGs~DG~V~vW~~gt 846 (847)
.+|... .++.|.+|+............... ...........+.+.+ ++.+| +++..++.|+||++..
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEEecC
Confidence 355544 466788998653322112111110 0001111101123334 45555 5556677999999853
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=186.36 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=193.0
Q ss_pred cceEEEecCCCeEeecCCC---eEEeC--CCCchhhccccccccCCCCCceEEeeec----CC-----CCCCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLTSPSN---QLWDD--KDLELRADMDRLVEDGSLDDNVESFLSH----DD-----TDPRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~---~iWD~--~~~~~~~~~~~~~~~g~~d~~v~~~~s~----d~-----t~~~d~~v~vwd 621 (847)
...+.|+|||+++++.+.+ .+||+ .++++...+. .+. ....+.+++ |+ ....++.|.+||
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGI--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCS--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCC--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 5678899999999876544 88999 6766544332 111 112233444 44 223478999999
Q ss_pred ccCCceeeEeEEeec----------C-CCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeE--EEccCCCCeEEEE
Q 003106 622 VSQGFSFKEANSVRA----------S-TSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVR 687 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~----------h-~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~I~~v~ 687 (847)
..++. ++.++.. | ...|.++.|+++++. +++...+++|.+||+.+.+.+. ++ .+...+.++.
T Consensus 255 ~~t~~---~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~ 330 (543)
T 1nir_A 255 GETLE---PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGG 330 (543)
T ss_dssp TTTCC---EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEE
T ss_pred ccccc---cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCce
Confidence 98763 4444432 2 337999999997664 5666788999999998766544 44 4667789999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEEEecc----CCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCC------
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----HSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINN------ 755 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~------ 755 (847)
|+|++++|++++ .+++|++||+.+ ++++.++.. |.+....+ ++|++..+++++. .|++|+|||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred ECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 999999876655 689999999998 777777764 65444443 5788667887876 689999999998
Q ss_pred -CceEEEEeeCCceEEEEEec-CCCEEEEEcC-------CCcEEEEcCCcccce-eee-cccccCCCCcccccccccccc
Q 003106 756 -GSCTRVFKVESFCCWCVNAM-NRPCLWDKLD-------AGDIQISDSLFINAN-IFC-GLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 756 -~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------~g~i~i~d~~~~~~~-~~~-~~~~~~~~~~~~~~w~~~~~~ 824 (847)
++++.++..+...+..+.+. +...+|.... ++.|.+||....... ... ...+.+.......+|.+.+.+
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 89999999988776666655 4567888762 668999997654433 111 111222223345677777777
Q ss_pred CCCcEEEEE-----eCCCeEEEEEccCC
Q 003106 825 CRECCLYTG-----CGDSSLSSFIAGTY 847 (847)
Q Consensus 825 ~~~~~l~sG-----s~DG~V~vW~~gty 847 (847)
++..++++ +.|+.|.|||..|.
T Consensus 489 -~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 -RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp -SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred -CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 45555544 24899999998763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=185.34 Aligned_cols=158 Identities=11% Similarity=0.140 Sum_probs=124.7
Q ss_pred cCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------ce---eEEEccCCCCeEEEEEcCC-CCEEEEEe
Q 003106 636 ASTSKVICCHFSSDGKLLA----TGGHDKKAVLWHTDTL--------KS---KTNLEEHSSLITDVRFSPS-MPRLATSS 699 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~La----sgs~Dg~V~vwd~~~~--------~~---~~~l~~h~~~I~~v~fsp~-~~~Lasgs 699 (847)
.|...|++|+|++++++|+ +|+.|++|+|||+.++ +. +..+.+|...|++|+|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4677899999999999999 7889999999998654 22 4556679999999999998 78999999
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-------ceEEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------FCCWCV 772 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-------~~v~~~ 772 (847)
.||+|+|||+++ +..+....+|...|++++|+|+|.. |++|+.||+|++||++ ++....+..+. ..+.++
T Consensus 170 ~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 999999999998 5556666778999999999999875 5589999999999999 66666665432 267777
Q ss_pred EecCCCEEEEEc--CCC------cEEEEcCCc
Q 003106 773 NAMNRPCLWDKL--DAG------DIQISDSLF 796 (847)
Q Consensus 773 ~~~~~~~l~~~~--~~g------~i~i~d~~~ 796 (847)
.+.....+..+. .+| .+++|+...
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 776665554322 222 277888553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-16 Score=167.10 Aligned_cols=221 Identities=10% Similarity=0.078 Sum_probs=147.8
Q ss_pred CCcEEEEecc--CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCceeEEEccCCCCeEEEE
Q 003106 614 DAGGRGMDVS--QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTD---TLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 614 d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~---~~~~~~~l~~h~~~I~~v~ 687 (847)
++.+++|++. ++ .++.+..+..+. .+.+++|+|++++|++++. ++.|++||+. +.+.+..+..+ ..+.+++
T Consensus 59 ~~~v~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDG-ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTC-CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCE
T ss_pred CCeEEEEEecCCCC-ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEE
Confidence 4899999997 44 555666666554 8899999999998877765 8899999994 44455555444 4589999
Q ss_pred EcCCCCEEEEEe-CCCcEEEEECCCCCceEE----Eecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--Cce-
Q 003106 688 FSPSMPRLATSS-FDKTVRVWDADNPGYSLR----TFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSC- 758 (847)
Q Consensus 688 fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~----~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~--~~~- 758 (847)
|+|++++|++++ .|+.|++||+.+.+.... .+.. ....+.+++|+|+++++++++..++.|++||+.. ++.
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999888887 899999999986343321 2222 3457889999999998877777899999999953 433
Q ss_pred -EEEEeeC------CceEEEEEecCCC-EEE-EEcCCCcEEEEcCCcc--cceeeecccccCCCCccccccccccccCCC
Q 003106 759 -TRVFKVE------SFCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFI--NANIFCGLGWYGSDEIPAPSWKVSCRSCRE 827 (847)
Q Consensus 759 -~~~~~~~------~~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 827 (847)
+..+... ...+..+.+.... .++ ....++.|.+|+.... .......... ........|+ + ++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~s----~-dg 288 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVD----H-SG 288 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEEC----T-TS
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccceEEEC----C-CC
Confidence 2233211 1234456655443 455 5557889999996521 1111211111 1112333333 4 56
Q ss_pred cEEEEEe-CCCeEEEEEc
Q 003106 828 CCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 828 ~~l~sGs-~DG~V~vW~~ 844 (847)
.+|++++ .|+.|.+|++
T Consensus 289 ~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp SEEEEECTTTCEEEEEEE
T ss_pred CEEEEecCCCCeEEEEEE
Confidence 6666666 7899999965
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-16 Score=164.58 Aligned_cols=224 Identities=9% Similarity=-0.027 Sum_probs=153.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEccC-CCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h-~~~I~~v~ 687 (847)
.++.++.|++||+.++. ...+..|...|.+++|+|||++|++++ ++.|++||+++ ++....+..| ...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK----MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTE----EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCc----eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 45678999999998772 234556889999999999999999987 78999999998 8877666666 36789999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEEEEee
Q 003106 688 FSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~ 764 (847)
|+|++++|++++ .++.++||+++........+..+. .+.+++|+|+++.++++++.|+.++||++.. +.....+..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999998 445666665543233345555443 4899999999998887888899999998642 233455556
Q ss_pred CCceEEEEEecCCC-EEE-EEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC------
Q 003106 765 ESFCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD------ 836 (847)
Q Consensus 765 ~~~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D------ 836 (847)
+...+.++.+.... .++ ....++.+.+|+............. +. ...+.+.+.+ ++.+|++++.|
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~s~-dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SA----YGDWFPHPSP-SGDKVVFVSYDADVFDH 243 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CS----EEEEEEEECT-TSSEEEEEEEETTCCSC
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CC----cccCCeEECC-CCCEEEEEEcCCCCCcc
Confidence 66677777776443 344 3445778888874322211111111 11 1222333334 56777777665
Q ss_pred -----CeEEEEEccC
Q 003106 837 -----SSLSSFIAGT 846 (847)
Q Consensus 837 -----G~V~vW~~gt 846 (847)
+.|++|++.+
T Consensus 244 ~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDG 258 (297)
T ss_dssp CSSEEEEEEEEETTS
T ss_pred cccCceEEEEEecCC
Confidence 5699998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=187.31 Aligned_cols=280 Identities=10% Similarity=0.016 Sum_probs=178.4
Q ss_pred CCcceEEEecCCCeEeecCC---------CeEEeCCCCchhhcccccccc----------CCC---------CCceEEee
Q 003106 554 TSKPLMMFGTDGAGTLTSPS---------NQLWDDKDLELRADMDRLVED----------GSL---------DDNVESFL 605 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~---------~~iWD~~~~~~~~~~~~~~~~----------g~~---------d~~v~~~~ 605 (847)
.....++|+|||+++++.+. ..+||+.+++....+...... ... .....+.+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999998877543 468999888654332211000 000 00112234
Q ss_pred ecCC---CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC
Q 003106 606 SHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 606 s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
++|+ ....++.|.+||+.++.. .....+..|...+.+++|+|||++|++++ ++.|++||+.+++.......+...
T Consensus 117 SpDg~~l~~~~~~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLGGELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeCCcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 5554 111238899999987610 02345667888999999999999999988 469999999988776555444432
Q ss_pred ----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 003106 683 ----------------ITDVRFSPSMPRLATSSFDK---------------------------------TVRVWDADN-P 712 (847)
Q Consensus 683 ----------------I~~v~fsp~~~~Lasgs~Dg---------------------------------~V~iWD~~~-~ 712 (847)
+.+++|+|||++|++++.|+ .|++||+.+ .
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788999976 4
Q ss_pred CceEEEec--cCCCCeEEEEEecCCCeEEEEEe----CCCcEEEEECCCCceEEEEeeCCc----eEEEEEecC-CCEEE
Q 003106 713 GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINNGSCTRVFKVESF----CCWCVNAMN-RPCLW 781 (847)
Q Consensus 713 ~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s----~Dg~V~iWD~~~~~~~~~~~~~~~----~v~~~~~~~-~~~l~ 781 (847)
. ...... .|...+.+++| |||+.+++++. .+..|++||+.++++...+..+.. .+..+.+.. ...++
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 275 Q-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp C-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred c-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 3 333322 47788999999 99997775554 357899999999998887766542 222334432 33677
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCcccc-ccccccccCCCc-EEEEEeCCC--eEEEEEcc
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAP-SWKVSCRSCREC-CLYTGCGDS--SLSSFIAG 845 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~-~l~sGs~DG--~V~vW~~g 845 (847)
....++.+.+|....... ..... .+...+... .|+ + ++. ++++++.|+ .++||++.
T Consensus 353 ~~~~~g~~~l~~~~~~~~--~~~l~-~~~~~v~~~~~~s----~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK--AAALT-HGNWSVDELLAVD----E-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSSCEEEEECSSSC--EEESC-CSSSCEEEEEEEE----T-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred EecCCCccEEEEEcCCCC--eeeee-ecceEEEeEeEEe----C-CCCEEEEEEeCCCCceEEEEEEE
Confidence 777788766765332111 11111 111111111 133 3 444 556666666 89999874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-16 Score=174.39 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=155.6
Q ss_pred CCcEEEEec--cCCceeeEeEEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCc
Q 003106 614 DAGGRGMDV--SQGFSFKEANSVRASTSKVICCHFSS--------------DGKLLATGGHD------KKAVLWHTDTLK 671 (847)
Q Consensus 614 d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~l~fsp--------------dg~~Lasgs~D------g~V~vwd~~~~~ 671 (847)
+..+++||+ .++. ......+.+|...|.++++++ .+..|+.++.+ +.|++||++. .
T Consensus 92 ~~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~ 169 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGT-VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y 169 (415)
T ss_dssp EEEEEEEECSSSTTC-EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C
T ss_pred EEEEEEEeCCCCCCC-EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C
Confidence 348999999 8773 222356788998888888775 25666666654 7999999984 5
Q ss_pred eeEEEccCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-
Q 003106 672 SKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE- 747 (847)
Q Consensus 672 ~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~- 747 (847)
.+..+..|...|.+++|+|+|++|++++.|+ .|++||+++ +.+ ..+..|...+.+++|+|+|+.++++++.|+.
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 5677888999999999999999999999875 999999998 554 3566788899999999999988778877665
Q ss_pred -EEEEECCCCceEEEEeeCCceEEEEEecCCC-EEEEEcC-CC--cEEEEcCCcccceeeecccccCCCCcccccccccc
Q 003106 748 -IRYWSINNGSCTRVFKVESFCCWCVNAMNRP-CLWDKLD-AG--DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSC 822 (847)
Q Consensus 748 -V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 822 (847)
|++||++++++ ..+..+...+.++.+..+. .++..+. ++ .|.+|+........+. .+........|
T Consensus 248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~----~~~~~~~~~~~---- 318 (415)
T 2hqs_A 248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT----WEGSQNQDADV---- 318 (415)
T ss_dssp EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC----CSSSEEEEEEE----
T ss_pred eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe----cCCCcccCeEE----
Confidence 99999998876 5566666777788776543 4554444 44 4666675432211111 11112222233
Q ss_pred ccCCCcEEEEEeCC---CeEEEEEccC
Q 003106 823 RSCRECCLYTGCGD---SSLSSFIAGT 846 (847)
Q Consensus 823 ~~~~~~~l~sGs~D---G~V~vW~~gt 846 (847)
.+ ++.+|++++.| +.|++|++.+
T Consensus 319 sp-dG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 319 SS-DGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CT-TSSEEEEEEECSSCEEEEEEETTT
T ss_pred CC-CCCEEEEEECcCCceEEEEEECCC
Confidence 34 56777776654 5899999754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-15 Score=161.73 Aligned_cols=230 Identities=10% Similarity=0.021 Sum_probs=149.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCc--eeEEEccCCCCeEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTD--TLK--SKTNLEEHSSLITDV 686 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~V~vwd~~--~~~--~~~~l~~h~~~I~~v 686 (847)
..++.|++||+......+.+..+ .|...+.+++|+|++++|++++.+ +.|++|+++ +++ .+..+..+. .+.++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 34788999998643244444443 477789999999999999988886 999999998 554 334454444 78999
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCC--CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CceEE--
Q 003106 687 RFSPSMPRLATSSF-DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR-- 760 (847)
Q Consensus 687 ~fsp~~~~Lasgs~-Dg~V~iWD~~~~--~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~~~-- 760 (847)
+|+|++++|++++. ++.|++||+... ...+..+..+ ..+.+++|+|+++.+++++..|+.|++||+.+ ++...
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 99999998877665 889999999521 2344444433 46899999999997776665899999999998 65432
Q ss_pred --EEeeC-CceEEEEEecCCC-EEEE-EcCCCcEEEEcCCccccee--eecccccCCC-CccccccccccccCCCcEE-E
Q 003106 761 --VFKVE-SFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINANI--FCGLGWYGSD-EIPAPSWKVSCRSCRECCL-Y 831 (847)
Q Consensus 761 --~~~~~-~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~-~~~~~~w~~~~~~~~~~~l-~ 831 (847)
.+... ...+.++.+.... .++. ...++.+.+|+........ .......... ........+.+.+ ++.+| +
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v 247 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYA 247 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEE
Confidence 22322 3356666665444 3544 4478889999964322111 1111100000 0011111233334 45444 4
Q ss_pred EEeCCCeEEEEEcc
Q 003106 832 TGCGDSSLSSFIAG 845 (847)
Q Consensus 832 sGs~DG~V~vW~~g 845 (847)
++..|+.|++|++.
T Consensus 248 ~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 248 CDRTASLITVFSVS 261 (343)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EecCCCEEEEEEEc
Confidence 66689999999975
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=183.82 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=141.2
Q ss_pred cceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC-------------CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------------TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-------------t~~~d~~v~vw 620 (847)
...++|+|||++++++. ..++||+.+++....+..... .......+.+++|+ ....++.+.+|
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 45678999999776532 337899988865433221100 00001122233443 11235889999
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe-----------------
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI----------------- 683 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I----------------- 683 (847)
|+.++. .+.+....+|...|.+++|+|||++||+++. +.|++||+.+++.......+...|
T Consensus 97 d~~~~~-~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGD-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCC-CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCc-eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 999873 3444444556667999999999999999986 799999999888776665544333
Q ss_pred -EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCCceEEEeccC------
Q 003106 684 -TDVRFSPSMPRLATSSFDK----------------------------------TVRVWDADNPGYSLRTFMGH------ 722 (847)
Q Consensus 684 -~~v~fsp~~~~Lasgs~Dg----------------------------------~V~iWD~~~~~~~~~~~~~h------ 722 (847)
.+++|+|||++|++++.|+ +|++||+.+ +.....+..+
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCc
Confidence 7899999999999887553 799999987 4444555544
Q ss_pred CCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCceEEEEee
Q 003106 723 SASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 723 ~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~~~~~~~~ 764 (847)
...|.+++|+|||+.+++.... +..|++||+.++++...+..
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 5678999999999855433332 35799999999988777654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=156.84 Aligned_cols=222 Identities=11% Similarity=0.028 Sum_probs=152.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCce-eEEEccCCCCeEEEEEc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKS-KTNLEEHSSLITDVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fs 689 (847)
..++.|++||+.++ +.+..+..+...+ +++|+||+++|++++. ++.|++||+.+++. ...+..+...+.+++|+
T Consensus 17 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s 92 (331)
T 3u4y_A 17 QHLRRISFFSTDTL---EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDIT 92 (331)
T ss_dssp GGGTEEEEEETTTC---CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEEC
T ss_pred cCCCeEEEEeCccc---ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEEC
Confidence 45678999999887 3444455566667 9999999997776665 89999999999887 77777777766669999
Q ss_pred CCCCEEEEEeCCC---cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCceEEEE---
Q 003106 690 PSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVF--- 762 (847)
Q Consensus 690 p~~~~Lasgs~Dg---~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~-V~iWD~~~~~~~~~~--- 762 (847)
|++++|+++..++ .|++||+.+ +..+..+.. ...+.+++|+|+|+++++++..++. |.+||+.....+...
T Consensus 93 ~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 93 PDDQFAVTVTGLNHPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp TTSSEEEECCCSSSSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCEEEEecCCCCcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 9999999555553 899999998 666666654 4557999999999988878777788 999999864433211
Q ss_pred -eeCCceEEEEEecCCC-EEEE-EcCCCcEEEEcCCcccc-eeeecccccCCCCccccccccccccCCCcEE-EEEeCCC
Q 003106 763 -KVESFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINA-NIFCGLGWYGSDEIPAPSWKVSCRSCRECCL-YTGCGDS 837 (847)
Q Consensus 763 -~~~~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l-~sGs~DG 837 (847)
.........+.+..+. .+|. ...++.|.+|+...... ....... .... ...+.+.+ ++.++ ++...++
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~----~~~~~~sp-dg~~l~v~~~~~~ 243 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNL----PGTIVVSR-DGSTVYVLTESTV 243 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSC----CCCEEECT-TSSEEEEECSSEE
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCC----CceEEECC-CCCEEEEEEcCCC
Confidence 1223345666666544 3554 44678899999653322 0011111 1111 22233334 56645 4555688
Q ss_pred eEEEEEccC
Q 003106 838 SLSSFIAGT 846 (847)
Q Consensus 838 ~V~vW~~gt 846 (847)
.|.+|+..+
T Consensus 244 ~i~~~d~~~ 252 (331)
T 3u4y_A 244 DVFNFNQLS 252 (331)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 999999754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=154.52 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=159.0
Q ss_pred cceEEEecCCCeEeecCC----CeEEeCCCCchhhcccccccc----CCCCCceEEeeecCC-----CC-CCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLTSPS----NQLWDDKDLELRADMDRLVED----GSLDDNVESFLSHDD-----TD-PRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~----~~iWD~~~~~~~~~~~~~~~~----g~~d~~v~~~~s~d~-----t~-~~d~~v~vwd 621 (847)
...++|++||+.+++... ..+||..+++....+..-... +.......+.+++++ ++ ..++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 356789999996655432 378999988765543221000 000001223344443 11 3477899999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc----CCCCeEEEEEcCCCCEEEE
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLAT 697 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~v~fsp~~~~Las 697 (847)
+.++ +.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++|++
T Consensus 171 ~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 171 GGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp TTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred CCCC---ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 9876 45555655666789999999999999999999999999999998887764 5567889999999998877
Q ss_pred EeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC
Q 003106 698 SSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776 (847)
Q Consensus 698 gs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~ 776 (847)
++. ++.|.+||+.+ +..+..+.... ..+++|+|+++++++++..++.|.+||+.+++.+..+.... .+.++.+..
T Consensus 248 ~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 323 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA 323 (353)
T ss_dssp EESSSSEEEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT
T ss_pred EeCCCCEEEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC
Confidence 665 59999999988 66666665433 35699999999888788789999999999999888877654 455565543
Q ss_pred CC-EEEEEcC
Q 003106 777 RP-CLWDKLD 785 (847)
Q Consensus 777 ~~-~l~~~~~ 785 (847)
+. .+|....
T Consensus 324 dg~~l~v~~~ 333 (353)
T 3vgz_A 324 DGKTLYVSVK 333 (353)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 33 3444433
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-15 Score=153.83 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=145.7
Q ss_pred CeEEeCCCCchhhccccccccCCCCCce-EEeeecCC---CCCCCCcEEEEeccC-CceeeEeEEeecC-CCCEEEEEEc
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD---TDPRDAGGRGMDVSQ-GFSFKEANSVRAS-TSKVICCHFS 647 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~---t~~~d~~v~vwd~~~-~~~~~~~~~l~~h-~~~V~~l~fs 647 (847)
..+||+.+++....... ...+ .+.+++++ ..+.++.|.+||+.+ +. ....+..| ...|.+++|+
T Consensus 24 i~~~d~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 24 IEIFNIRTRKMRVVWQT-------PELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS---PEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEETTTTEEEEEEEE-------SSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS---CEECCCTTCCCBCSCCEEC
T ss_pred EEEEeCCCCceeeeccC-------CcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC---ceEeccccccccccceEEC
Confidence 37899888765432211 1112 22334444 123477999999988 62 23334444 4788999999
Q ss_pred CCCCEEEEEe--CCCcEEEEEC--CCCceeEEEccCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceEEEeccC
Q 003106 648 SDGKLLATGG--HDKKAVLWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGH 722 (847)
Q Consensus 648 pdg~~Lasgs--~Dg~V~vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h 722 (847)
||+++|++++ .++.++||.+ .++. ...+..+. .+.+++|+|++++|+ +++.|+.++||+++........+..|
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 9999999999 3455555554 4444 34454443 489999999999876 77789999999976434556677778
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEEEecCCC-EEEEEcCC-----------CcE
Q 003106 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCVNAMNRP-CLWDKLDA-----------GDI 789 (847)
Q Consensus 723 ~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~~-----------g~i 789 (847)
...+.+++|+|+++.+++++..|+.++||++. .+..+..+..+...+.++.+.... .++....+ +.|
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 88999999999999777666679999999987 566677777777777777766443 44444433 458
Q ss_pred EEEcCCc
Q 003106 790 QISDSLF 796 (847)
Q Consensus 790 ~i~d~~~ 796 (847)
.+|+...
T Consensus 252 ~~~d~~~ 258 (297)
T 2ojh_A 252 QLMDMDG 258 (297)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 8888654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=154.27 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=111.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC-C-CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcc-C----CCCe
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST-S-KVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-H----SSLI 683 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~-~-~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~-h----~~~I 683 (847)
..++.|++||+.++ +.+..+.... . .+.+++|+||+++|+ +++.++.|++||+.+++.+..+.. + ...+
T Consensus 8 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T 1pby_B 8 ARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp ETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred CCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence 45788999999877 3444444222 2 588999999998764 555678999999999998877753 2 2267
Q ss_pred EEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 684 TDVRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs------------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
.+++|+|++++|++++ .++.|++||+.+ +..+..+.. ...+.+++|+|+++.++++ ++.|++|
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~ 159 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVM 159 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEE
Confidence 8999999999998886 579999999987 666666654 4568889999999876644 6899999
Q ss_pred ECCCCceEEEEee
Q 003106 752 SINNGSCTRVFKV 764 (847)
Q Consensus 752 D~~~~~~~~~~~~ 764 (847)
|+++++.+..+..
T Consensus 160 d~~~~~~~~~~~~ 172 (337)
T 1pby_B 160 DPEAGTLVEDKPI 172 (337)
T ss_dssp ETTTTEEEEEECS
T ss_pred ECCCCcEeeeeec
Confidence 9999887766543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-14 Score=179.28 Aligned_cols=186 Identities=15% Similarity=0.030 Sum_probs=137.0
Q ss_pred CcceEEEe-cCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEE-EEeccCC
Q 003106 555 SKPLMMFG-TDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGR-GMDVSQG 625 (847)
Q Consensus 555 ~~~~v~~s-~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~-vwd~~~~ 625 (847)
....++|+ |||+.+++.... .+||+.++...... .. ....+. ..++ |+ ....+..+. +||+.++
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~----~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP----EP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS----CC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc----CC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 46789999 999988776544 66777766533210 00 000111 1111 21 111145666 7788765
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC---
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--- 702 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--- 702 (847)
. ...+.+|...+.+++|+|||++|++++.|+.|++||+.+++....+.+|...|.+++|+|||++|++++.++
T Consensus 370 -~---~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 370 -K---AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp -C---EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred -C---ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 2 233447889999999999999999999999999999999998888878999999999999999998887654
Q ss_pred -------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 703 -------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 703 -------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.|++||+.+ +. +..+..|...+.+++|+|+|+.++ +++.++.+++|+..
T Consensus 446 ~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l~-~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRV 501 (1045)
T ss_dssp TCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSS
T ss_pred ccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEEE-EEecccCCcCcchh
Confidence 899999987 44 677888888899999999998665 66666777777654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-14 Score=153.65 Aligned_cols=225 Identities=10% Similarity=0.076 Sum_probs=148.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CC--ceeEEEcc---------C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TL--KSKTNLEE---------H 679 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~--~~~~~l~~---------h 679 (847)
.++.|.+||+.++ ..+.+..+..+...+.+++|+|||++|++++ .++.|++||+. ++ +.+..+.. +
T Consensus 61 ~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 61 DEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred CCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence 3678999999776 5666777677888899999999999998888 68999999996 33 23333322 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE--EEecc-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN- 755 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~--~~~~~-h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~- 755 (847)
...+.+++|+|+++.+++...++.|++||+...+... ..+.. ....+..++|+|+|+++++++..++.|++||+..
T Consensus 140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 2348899999999955666678899999998424332 22222 2346889999999998887888899999999874
Q ss_pred -CceE--EEEeeCC------ceEEEEEecCCC-EEE-EEcCCCcEEEEcCCccc-ceeeecccccCCCCccccccccccc
Q 003106 756 -GSCT--RVFKVES------FCCWCVNAMNRP-CLW-DKLDAGDIQISDSLFIN-ANIFCGLGWYGSDEIPAPSWKVSCR 823 (847)
Q Consensus 756 -~~~~--~~~~~~~------~~v~~~~~~~~~-~l~-~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~ 823 (847)
++.. ..+.... ..+..+.+..+. .+| +...++.|.+|+..... ........ .+.... +.+.+.
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~----~~~~~s 294 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFP----RDFDLD 294 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCC----CEEEEC
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCc----CeEEEC
Confidence 5432 2332222 346667666554 354 44567889999864211 11111111 111112 233333
Q ss_pred cCCCcEEEEEe-CCCeEEEEEc
Q 003106 824 SCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 824 ~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
+ ++.+|++++ .++.|.+|++
T Consensus 295 p-dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 295 P-TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp T-TSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEEEcCCCcEEEEEE
Confidence 4 566666665 5599999955
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=171.91 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=168.8
Q ss_pred CCcceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccC----
Q 003106 554 TSKPLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQ---- 624 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~---- 624 (847)
..+..++|+|| +.+++.. ...+||+.+++....... .+ . ...+.+++|+ ....++.|.+||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~---~~-~--~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDT---NE-E--TASLDFSPVGDRVAYVRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECC---TT-C--CTTCEECTTSSEEEEEETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCC---cc-c--ccCCcCCCCCCEEEEEECCeEEEEecCccccc
Confidence 35678999999 5544433 338899988765432111 00 0 1111233443 123568999999987
Q ss_pred -CceeeEeEEeecCCCC--------------EEEEEEcCCCCEEEEEe--------------------------------
Q 003106 625 -GFSFKEANSVRASTSK--------------VICCHFSSDGKLLATGG-------------------------------- 657 (847)
Q Consensus 625 -~~~~~~~~~l~~h~~~--------------V~~l~fspdg~~Lasgs-------------------------------- 657 (847)
+. .......+... +.+++|+|||++|++++
T Consensus 155 ~g~---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSR---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCC---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCC---cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 62 22222222222 58999999999999998
Q ss_pred -CCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceEEEec-cCCC---C
Q 003106 658 -HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFM-GHSA---S 725 (847)
Q Consensus 658 -~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~-~h~~---~ 725 (847)
.+..|++||+++++...... .|...|.+++|+|||++|++++.|+ .|++||+.++......+. .+.. .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999999887654432 4667899999999999999887775 899999998313332222 2222 2
Q ss_pred eEEEEEec--CCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEE-EEecCC-CEE-EEEcCCC----cEEEEcCC
Q 003106 726 VMSLDFHP--NKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWC-VNAMNR-PCL-WDKLDAG----DIQISDSL 795 (847)
Q Consensus 726 V~sl~fsp--~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~-~~~~~~-~~l-~~~~~~g----~i~i~d~~ 795 (847)
+.+++|+| +|+ ++++++.|+.++||++. ++..+..+..+...+.. +.+..+ ..+ +....++ .|..|+..
T Consensus 312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp CSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred cCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 46789999 887 66788889999999886 66777777776665654 455433 334 4444444 45555543
Q ss_pred cccceeeecccccCCCCccccccccccccCCCcEEEEE-eCC---CeEEEEEccC
Q 003106 796 FINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGD---SSLSSFIAGT 846 (847)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~D---G~V~vW~~gt 846 (847)
......+ . .... ++.+.+.+ ++.+|+.. +.+ +.|++|++.+
T Consensus 391 ~~~~~~l---~--~~~~----~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 391 GGKTKDL---T--PESG----MHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp CCCCEES---C--CSSS----EEEEEECT-TSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCCceec---c--CCCc----eEEEEECC-CCCEEEEEecCCCCCcEEEEEECCC
Confidence 2211111 1 1111 23333334 45555554 433 5699998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=173.14 Aligned_cols=227 Identities=13% Similarity=0.061 Sum_probs=154.3
Q ss_pred cceEEEecCCCeEeecCC--CeEEeCCCC---chhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPS--NQLWDDKDL---ELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~--~~iWD~~~~---~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~ 627 (847)
+..++|+|||+++++... ..+||+.++ .... +... ......+.+++|+ ....++.|.+||+.++.
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~----l~~~--~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~- 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ----LTHG--EGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR- 183 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB----CCCS--SSCEEEEEECTTSSEEEEEETTEEEEEETTTTE-
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE----cccC--CcccccccCCCCCCEEEEEeCCcEEEEecCCCC-
Confidence 467899999998877654 478999887 3322 1111 0111223355555 12234589999998762
Q ss_pred eeEeEEeecCCCC----------------EEEEEEcCCCCEEEEEeCCC-------------------------------
Q 003106 628 FKEANSVRASTSK----------------VICCHFSSDGKLLATGGHDK------------------------------- 660 (847)
Q Consensus 628 ~~~~~~l~~h~~~----------------V~~l~fspdg~~Lasgs~Dg------------------------------- 660 (847)
.......+... +.+++|+|||++|++++.|+
T Consensus 184 --~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 --QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp --EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred --EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222233332 47899999999999998776
Q ss_pred --cEEEEECCC-CceeEEEc--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceEEEeccCCC----Ce
Q 003106 661 --KAVLWHTDT-LKSKTNLE--EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSA----SV 726 (847)
Q Consensus 661 --~V~vwd~~~-~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~~~~~~~~~~~h~~----~V 726 (847)
.|++||+.+ ++...... .|...|.+++| |||++|++++. +..|++||+.+ +.+...+..+.. .+
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcC
Confidence 789999988 87655443 47788999999 99999987654 56799999998 666666655543 45
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECC-CCceEEEEeeCCceEEEE-EecCC-C-EEEEEcCCC--cEEEEcCC
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCV-NAMNR-P-CLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-~~~~~~~~~~~~~~v~~~-~~~~~-~-~l~~~~~~g--~i~i~d~~ 795 (847)
.+++|+|+|+ ++++++.||.++||.+. .+. +..+..+...+..+ .+..+ . .++....++ .+.+|+..
T Consensus 340 ~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 340 NSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp SCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 6899999998 77788889988888776 345 67777666666554 24433 3 445555555 77888743
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=151.68 Aligned_cols=234 Identities=12% Similarity=0.068 Sum_probs=147.1
Q ss_pred CcceEEEecCCCeEeecCC-----C--eEEeCCC--CchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEE
Q 003106 555 SKPLMMFGTDGAGTLTSPS-----N--QLWDDKD--LELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGM 620 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~-----~--~iWD~~~--~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vw 620 (847)
....++|+|||+.+++.+. . .+|++.. +++.. +...... ....+.+.. ++ +...++.+.+|
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~~~~~~---~~~p~~~~~-dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LNTQKTM---GADPCYLTT-NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE-EEEEECS---SSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE-eeEeccC---CCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence 4456899999998877554 2 5688764 33221 1111111 111111111 22 23457899999
Q ss_pred eccCCceeeEeEEeec-----------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-------ee------EE
Q 003106 621 DVSQGFSFKEANSVRA-----------STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLK-------SK------TN 675 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~-----------h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~-------~~------~~ 675 (847)
++.....+..+..... +...+.+++|+|||++|++++ .++.|++|+++... .. ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975433332222111 233468999999999776655 48899999987433 21 11
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEe---ccCCCCeEEEEEecCCCeEEEEEeC-CCcE
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTF---MGHSASVMSLDFHPNKDDLICSCDG-DGEI 748 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V 748 (847)
...+...+.+++|+|++++|++++ .+++|++||+++ +.. +..+ ..+...+.+++|+|+|+++++++.. ++.|
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 223455688999999999887777 699999999986 432 2222 2334567899999999987767766 6899
Q ss_pred EEEECC--CCc--eEEEEeeCCceEEEEEecCCC-EEEEEc-CCCcEEEEcCC
Q 003106 749 RYWSIN--NGS--CTRVFKVESFCCWCVNAMNRP-CLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 749 ~iWD~~--~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~~g~i~i~d~~ 795 (847)
.+|++. +++ .+..+.. ...+.++.+..+. .++... .++.|.+|...
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 999996 454 3444444 4455666665443 466555 67788887543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=147.63 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=153.6
Q ss_pred cceEEEecCCCeEeecC----CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCC------------CCC
Q 003106 556 KPLMMFGTDGAGTLTSP----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDP------------RDA 615 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~------------~d~ 615 (847)
...++|+|||+.+++.. ...+||+.+++....+..-...........+.+++++ .+. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 45689999998765432 2378999888765433211000000001111222222 111 468
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 695 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~L 695 (847)
.|.+||+.++ +.+..+.. ...+.+++|+||+++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|+++.|
T Consensus 116 ~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 188 (337)
T 1pby_B 116 RVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV 188 (337)
T ss_dssp EEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred eEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence 9999999876 33444443 4568889999999988888 68999999999998887765441 1133789999877
Q ss_pred EEEeC-CC-----------------------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 003106 696 ATSSF-DK-----------------------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (847)
Q Consensus 696 asgs~-Dg-----------------------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW 751 (847)
+.++. ++ .|.+||+.+.......+..+...+.+++|+|+++.++ ++ ++.|++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~ 265 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESF 265 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEE
Confidence 55543 22 4689999984333344556777889999999998665 44 6899999
Q ss_pred ECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCc
Q 003106 752 SINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 752 D~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~ 796 (847)
|+++++.+..+..+. .+.++.+.. ...++.+..++.|.+|+...
T Consensus 266 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 266 DLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp ETTTTEEEEEEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred ECCCCcCcceecCCC-ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 999999888776543 345555553 45678888889999999654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=167.01 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=130.1
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEc--
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTS---KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLE-- 677 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~-- 677 (847)
+.|+.|++||+.++ +....+..|.. .|.+++|+|||++|++++.| +.|++||+++++. ..+.
T Consensus 34 ~~dg~i~~~d~~~g---~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~ 109 (723)
T 1xfd_A 34 EQKGTVRLWNVETN---TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP 109 (723)
T ss_dssp CSSSCEEEBCGGGC---CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT
T ss_pred eCCCCEEEEECCCC---cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC
Confidence 46789999999987 33445556654 49999999999999999875 7788999998876 3333
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC------------------eEEEEEecCCCeE
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS------------------VMSLDFHPNKDDL 738 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~------------------V~sl~fsp~g~~l 738 (847)
.|...|.+++|+|||+.|++++. +.|++||+.+ +........+... +.+++|+|||+.|
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ccccccccccEECCCCCEEEEEEC-CeEEEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 44555899999999999999885 7999999997 5555555444333 3789999999976
Q ss_pred EEEEeCC---------------------------------CcEEEEECCCCceEEEEeeC------CceEEEEEecCCCE
Q 003106 739 ICSCDGD---------------------------------GEIRYWSINNGSCTRVFKVE------SFCCWCVNAMNRPC 779 (847)
Q Consensus 739 l~s~s~D---------------------------------g~V~iWD~~~~~~~~~~~~~------~~~v~~~~~~~~~~ 779 (847)
+++...+ ..|++||+.++++...+..+ ...+..+.+..+..
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 6443221 17999999998876666654 45677777776654
Q ss_pred EE-EEc----CCCcEEEEcCCc
Q 003106 780 LW-DKL----DAGDIQISDSLF 796 (847)
Q Consensus 780 l~-~~~----~~g~i~i~d~~~ 796 (847)
++ ... .+..|.+||...
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTT
T ss_pred EEEEEEcCCCCeEEEEEEeCCC
Confidence 43 222 224578888553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=147.84 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=108.8
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCC------CCe
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHS------SLI 683 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~------~~I 683 (847)
..++.|.+||+.++ +.+..+..+. ..+.+++|+||+++++ ++..++.|++||+.+++.+..+..+. ..+
T Consensus 18 ~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~ 94 (349)
T 1jmx_B 18 NYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 94 (349)
T ss_dssp ETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred CCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccc
Confidence 34788999999877 3444454332 2578999999998665 55578999999999998887776432 237
Q ss_pred EEEEEcCCCCEEEEEeCC------------CcEEEEECCCCC--ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 684 TDVRFSPSMPRLATSSFD------------KTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D------------g~V~iWD~~~~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
.+++|+|++++|++++.+ +.|++||+.+.. ..+..+. +...+.+++|+|+++ +++ ++ +.|+
T Consensus 95 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~ 169 (349)
T 1jmx_B 95 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIY 169 (349)
T ss_dssp SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEE
T ss_pred cceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEE
Confidence 899999999999988865 899999998621 1233443 334688999999998 664 43 4599
Q ss_pred EEECCCCceEEEEeeC
Q 003106 750 YWSINNGSCTRVFKVE 765 (847)
Q Consensus 750 iWD~~~~~~~~~~~~~ 765 (847)
+||+++++.+..+..+
T Consensus 170 ~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLR 185 (349)
T ss_dssp EECTTTCCEEEEECST
T ss_pred EEeCCCCceecccccc
Confidence 9999999887776543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=146.51 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=143.1
Q ss_pred CCCcEEEEeccC--CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc--eeEEEccCCCCeEE
Q 003106 613 RDAGGRGMDVSQ--GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK--SKTNLEEHSSLITD 685 (847)
Q Consensus 613 ~d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~--~~~~l~~h~~~I~~ 685 (847)
.++.+.+|++.. + .+..+.. ..+...+.+++|+|||+ |++++. ++.|++||+++++ .+..+..+...+.+
T Consensus 14 ~~~~i~v~~~d~~tg-~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK-TLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTT-EEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCC-eEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 345666666553 4 3333333 34556788899999999 555544 6899999998665 44455567788999
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEecc---------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 686 VRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMG---------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 686 v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~~~---------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
|+|+|++++|++++ .+++|++||+...+.. +..+.. +...+.+++|+|+|+ +++++..++.|++||+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEE
Confidence 99999999998888 6899999999642332 222221 123488999999999 8878878899999999
Q ss_pred C-CCceEE--EEeeC-CceEEEEEecCCC-EEEE-EcCCCcEEEEcCCccccee--eecccccCCC-Ccccccccccccc
Q 003106 754 N-NGSCTR--VFKVE-SFCCWCVNAMNRP-CLWD-KLDAGDIQISDSLFINANI--FCGLGWYGSD-EIPAPSWKVSCRS 824 (847)
Q Consensus 754 ~-~~~~~~--~~~~~-~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~-~~~~~~w~~~~~~ 824 (847)
. +++... .+... ...+..+.+..+. .++. ...++.+.+|+........ .......... ........+.+.+
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 8 554332 22222 2245556665444 3554 5567788898754311111 1111111110 0001122333344
Q ss_pred CCCcEE-EEEeCCCeEEEEEcc
Q 003106 825 CRECCL-YTGCGDSSLSSFIAG 845 (847)
Q Consensus 825 ~~~~~l-~sGs~DG~V~vW~~g 845 (847)
++.+| +++..++.|.+|++.
T Consensus 250 -dG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 250 -DGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp -TSCEEEEEEETTTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCEEEEEEEC
Confidence 55554 667789999999974
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=163.03 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=129.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEc-c-CCC---C
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLE-E-HSS---L 682 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~-~-h~~---~ 682 (847)
.+..|.+||+.++ ....+.....|...|.+++|+|||++|++++.|+ .|++||+.+++....+. . +.. .
T Consensus 233 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 233 HHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 4567899999887 3222222235778899999999999999988776 89999999884433332 2 222 2
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCC
Q 003106 683 ITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-LDFHPNKDDLICSCDGDG----EIRYWSINN 755 (847)
Q Consensus 683 I~~v~fsp--~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~s-l~fsp~g~~ll~s~s~Dg----~V~iWD~~~ 755 (847)
+.+++|+| +|++|++++.|+.++||+++..+..+..+..|...|.+ ++|+|+++.++++++.++ .|..||+.+
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 46889999 99999999999999999987436677888888888877 899999998887777766 677778877
Q ss_pred CceEEEEeeCCceEEEEEecCCC-EEEEE-cCC---CcEEEEcCCc
Q 003106 756 GSCTRVFKVESFCCWCVNAMNRP-CLWDK-LDA---GDIQISDSLF 796 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~~---g~i~i~d~~~ 796 (847)
++ +..+. +...+.++.+..+. .++.. ... +.+.+|+...
T Consensus 392 ~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 392 GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 76 33333 33445666665433 33333 322 4588888543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-12 Score=137.01 Aligned_cols=265 Identities=10% Similarity=0.047 Sum_probs=177.0
Q ss_pred CCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEE
Q 003106 554 TSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~ 633 (847)
.....++++++|+.++++..++.|++.+......+... ......++.|.+||..++.. +..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~d~~~g~~---~~~ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQR----------------GLGPIEEDTILVIDPNNAEI---LQS 84 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCG----------------GGCSCCSCCEEEECTTTCCE---EEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeeccc----------------ccccccCCcEEEEECCCCeE---Eec
Confidence 34678999999998888887777776544332211100 00112467899999987732 233
Q ss_pred ee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEE---------ccCCCCeEEEEEcC-CCCEEEEEe-C
Q 003106 634 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNL---------EEHSSLITDVRFSP-SMPRLATSS-F 700 (847)
Q Consensus 634 l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l---------~~h~~~I~~v~fsp-~~~~Lasgs-~ 700 (847)
+. ++...+.+|+|+++|+++++...++.|++||.+... .+..+ ..+-....+|+|+| ++.++++.+ .
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 32 455689999999999999988889999999986442 55555 24445789999999 777777776 6
Q ss_pred CCcEEEEECCCCCceEEEeccC----------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--CCce
Q 003106 701 DKTVRVWDADNPGYSLRTFMGH----------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--ESFC 768 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h----------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~~~~ 768 (847)
++.|++||.. +..+..+... ...+..|+|+|++..++++...++.|++||..+++.+..+.. ....
T Consensus 165 ~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 165 NSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp CCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred CCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 9999999943 5566666422 234899999999667888888899999999999998888853 3344
Q ss_pred EEEEEecCCCEEEEEc--------CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 769 CWCVNAMNRPCLWDKL--------DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~--------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
+..+.+.. ..++... ....|.+|+.... .+...++. ........+.+...+ ++.++++...++.|+
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~--~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKP--VRKHFDMPHDIVASE-DGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECC--SSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcC--CCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence 55665555 3333322 2336777774422 22222111 011122234455545 568889999999999
Q ss_pred EEEcc
Q 003106 841 SFIAG 845 (847)
Q Consensus 841 vW~~g 845 (847)
+|++.
T Consensus 317 ~~~~~ 321 (329)
T 3fvz_A 317 KFTLT 321 (329)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-14 Score=163.56 Aligned_cols=263 Identities=13% Similarity=-0.018 Sum_probs=163.3
Q ss_pred CcceEEEecCCCeEeecC----CCeEEeCCCCchhhcccc---ccccCCCCCceEEeeecCCCCCCCCcEEEEeccC--C
Q 003106 555 SKPLMMFGTDGAGTLTSP----SNQLWDDKDLELRADMDR---LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQ--G 625 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~----~~~iWD~~~~~~~~~~~~---~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~--~ 625 (847)
.+..++|++||+.++..+ ..+||++++++....... .+....+... .+.+..+. ...+...++|.+.. .
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~-~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDV-SKGAEQHALFKVNTSRP 100 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEEC-STTSCCEEEEEEETTST
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEecc-CCCCcceEEEEEeccCC
Confidence 467899999999987744 348999866554321111 1111112112 22222221 12234456665543 2
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC---
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--- 701 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D--- 701 (847)
.... .+..+ ..+...+|+|||+. +++.+.++.+.|||+++++.......+. .+++|+|||++|++++.|
T Consensus 101 g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 101 GEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred Cccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 1112 22222 23456788888863 3344444556699999887765554333 899999999999988877
Q ss_pred -CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCCceEEEEE-----
Q 003106 702 -KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVESFCCWCVN----- 773 (847)
Q Consensus 702 -g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~~~v~~~~----- 773 (847)
+.|++||+.+ +. +..+..|...+.+++|+|||+.++ +++.++ .|++||+.++++. .+..+...+..+.
T Consensus 174 ~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 174 RVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred CeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence 7899999987 44 346778889999999999998665 777888 8999999999877 6666554433322
Q ss_pred ---ecCC-CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCe---EEEEEc
Q 003106 774 ---AMNR-PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS---LSSFIA 844 (847)
Q Consensus 774 ---~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~---V~vW~~ 844 (847)
+..+ ..++....++.+.+|+. ...... . ...++.+.+. ++.++++++.+.+ |.+|+.
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~~----g~~~~~----~----~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFID----GERVEA----P----QGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEET----TEEECC----C----SSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEEE----CCeecc----C----CCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 3333 56677888899999986 111110 0 1122333333 5677888877754 555543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-13 Score=145.23 Aligned_cols=221 Identities=9% Similarity=0.040 Sum_probs=145.5
Q ss_pred EEecCCCeEeecCC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEe
Q 003106 560 MFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEA 631 (847)
Q Consensus 560 ~~s~dG~~~~~~~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~ 631 (847)
+++++++.+++... ..+||+.+++....+.. +.......+.+++++ +...++.|.+||+.++ +.+
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~ 78 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNT 78 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEE
Confidence 34555555555432 37899988876544321 110011122233333 2345788999999877 334
Q ss_pred EEeecC------CCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCc---eeEEEccCCCCeEEEEEcC
Q 003106 632 NSVRAS------TSKVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLK---SKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 632 ~~l~~h------~~~V~~l~fspdg~~Lasgs~D------------g~V~vwd~~~~~---~~~~l~~h~~~I~~v~fsp 690 (847)
..+..+ ...+.+++|+|||++|++++.+ +.|.+||+.+++ .+..+. +...|.+++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence 444322 2237889999999999999865 899999998744 334443 344689999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------------------------------------------
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----------------------------------------------- 723 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----------------------------------------------- 723 (847)
+++ |++++ +.|++||+.+ +..+..+..+.
T Consensus 158 dg~-l~~~~--~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TSC-EEEES--SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 999 66654 4499999987 55555543221
Q ss_pred ---------------------CCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEE
Q 003106 724 ---------------------ASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCL 780 (847)
Q Consensus 724 ---------------------~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 780 (847)
..+.+++|+| +++.++ ++ ++.|.+||+++++.+..+..... +.++.+.. ...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 309 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQRKLIKAANLDHT-YYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTTTEEEEEEECSSC-CCEEEECSSSSCE
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECccCeEEEEEcCCCC-ccceEECCCCCEE
Confidence 1355677889 888655 44 78999999999998888765433 44555553 3567
Q ss_pred EEEcCCCcEEEEcCCc
Q 003106 781 WDKLDAGDIQISDSLF 796 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~ 796 (847)
+....++.|.+||...
T Consensus 310 ~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEecCCCeEEEEeccc
Confidence 7777789999999653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-12 Score=140.59 Aligned_cols=223 Identities=9% Similarity=0.010 Sum_probs=143.7
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEE------cc------
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNL------EE------ 678 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l------~~------ 678 (847)
.++.+.+|++... ..++.+..+..+...+..+++ |+++|++++ .++.|.+|++.....+..+ .+
T Consensus 73 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 150 (361)
T 3scy_A 73 DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE 150 (361)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence 4578999998763 256667777767778888888 888887776 5789999999754332211 11
Q ss_pred --CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc------e------EEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 679 --HSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY------S------LRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 679 --h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~------~------~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
+...+.+++|+|++++|++++ .++.|++|+++.... . ......+...+.+++|+|+|+.+++++.
T Consensus 151 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 151 RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123468899999999776665 589999999886332 1 1222334566889999999997776766
Q ss_pred CCCcEEEEECCCCceEE--EEee---CCceEEEEEecCCC-EEEEEcC--CCcEEEEcCCcccce--eeecccccCCCCc
Q 003106 744 GDGEIRYWSINNGSCTR--VFKV---ESFCCWCVNAMNRP-CLWDKLD--AGDIQISDSLFINAN--IFCGLGWYGSDEI 813 (847)
Q Consensus 744 ~Dg~V~iWD~~~~~~~~--~~~~---~~~~v~~~~~~~~~-~l~~~~~--~g~i~i~d~~~~~~~--~~~~~~~~~~~~~ 813 (847)
.++.|++||+.+++... .+.. +......+.+..+. .++.... ++.|.+|+....... ....... ....
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~ 308 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHP 308 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCC
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCC
Confidence 78999999999775432 2222 12334566665443 4555544 478999986422111 1111111 1122
Q ss_pred cccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 814 PAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 814 ~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
. .+.+.+ ++.+|++++ .++.|.+|++
T Consensus 309 ~----~~~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 309 R----NFIITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp C----EEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred c----eEEECC-CCCEEEEEECCCCCEEEEEE
Confidence 2 233334 566666666 7899999765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=165.70 Aligned_cols=230 Identities=10% Similarity=-0.002 Sum_probs=144.9
Q ss_pred cceEEEecCCCeEeecC------------CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSP------------SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~------------~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vw 620 (847)
...++|||||+.++... ...+||+.+++.... ..+ . .......+++|+ ....++.|++|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l-~----~~~~~~~~SPDG~~la~~~~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NEL-P----RPIQYLCWSPVGSKLAYVYQNNIYLK 135 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCC-C----SSBCCEEECSSTTCEEEEETTEEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eec-C----cccccceECCCCCEEEEEECCeEEEE
Confidence 56889999999887654 337899998876210 011 0 111223345555 22346799999
Q ss_pred eccCCceeeEeEEeecCCCCE-----------------EEEEEcCCCCEEEEEeCCC-----------------------
Q 003106 621 DVSQGFSFKEANSVRASTSKV-----------------ICCHFSSDGKLLATGGHDK----------------------- 660 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V-----------------~~l~fspdg~~Lasgs~Dg----------------------- 660 (847)
|+.++.. ..+ +..++...| .+++|+|||++|++++.|.
T Consensus 136 ~~~~g~~-~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 136 QRPGDPP-FQI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp SSTTSCC-EEC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred eCCCCCc-EEE-ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9988732 211 112333322 4899999999999988652
Q ss_pred -----------cEEEEECCCCcee--------EEEccCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCC
Q 003106 661 -----------KAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWD----ADNPG 713 (847)
Q Consensus 661 -----------~V~vwd~~~~~~~--------~~l~~h~~~I~~v~fsp~~~~Lasgs~D----g~V~iWD----~~~~~ 713 (847)
.|++||+.+++.+ ..+.+|...|.+++|+||++++++.... ..|++|| +.+ +
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g 292 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-W 292 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-E
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-C
Confidence 7889999987653 1234688889999999998777664432 2488899 765 4
Q ss_pred ceEEEe----ccCCCCeE-----EEEEecCCCeEEE-EEeCCC--cEEEEECCCCceEEEEeeCCceEEEEEecCCCEEE
Q 003106 714 YSLRTF----MGHSASVM-----SLDFHPNKDDLIC-SCDGDG--EIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 714 ~~~~~~----~~h~~~V~-----sl~fsp~g~~ll~-s~s~Dg--~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
.+...+ .+|...|. ++.|+|+|+.+++ ++..+| .|.+||+.+++ ...+..+...+..+.+.+...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~ 371 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLF 371 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEE
Confidence 433333 46777776 8999999987665 344555 57777887776 44454444334433222444444
Q ss_pred EEcC-----CCcEEEEcCC
Q 003106 782 DKLD-----AGDIQISDSL 795 (847)
Q Consensus 782 ~~~~-----~g~i~i~d~~ 795 (847)
.... .+.+.+|...
T Consensus 372 ~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEESCGGGCTTCBEEEEEE
T ss_pred EEEecCCCCCceEEEEEEe
Confidence 4433 3667777643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=141.17 Aligned_cols=241 Identities=11% Similarity=0.043 Sum_probs=147.6
Q ss_pred CcceEEEecCCCeEeecC--CCeEEeCC-CCchhhcccc----ccccCCCCCceE--EeeecC-C----CCC----CCCc
Q 003106 555 SKPLMMFGTDGAGTLTSP--SNQLWDDK-DLELRADMDR----LVEDGSLDDNVE--SFLSHD-D----TDP----RDAG 616 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~--~~~iWD~~-~~~~~~~~~~----~~~~g~~d~~v~--~~~s~d-~----t~~----~d~~ 616 (847)
....++|+|||+++++.+ ...+||+. ++++...... ......++..-. .++..+ + .+. .++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 456789999999876655 34789987 6654321110 001111111111 111111 0 000 5788
Q ss_pred EEEEeccC-CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCcee--EEEc--cCCCCeEEEEE
Q 003106 617 GRGMDVSQ-GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTD-TLKSK--TNLE--EHSSLITDVRF 688 (847)
Q Consensus 617 v~vwd~~~-~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~-~~~~~--~~l~--~h~~~I~~v~f 688 (847)
+++|++.. +.....+..+. .+...+.+++|+|||++|++++. ++.|++||++ +++.. ..+. .|...+..++|
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence 99999974 42222222222 35678999999999999888764 6799999998 67653 2333 24567999999
Q ss_pred cCCCCEEEEEeC-CCcEEEEECCC-CCceE---EEec-------cCCC------CeEEEE-EecCCCeEEEEEeCCC---
Q 003106 689 SPSMPRLATSSF-DKTVRVWDADN-PGYSL---RTFM-------GHSA------SVMSLD-FHPNKDDLICSCDGDG--- 746 (847)
Q Consensus 689 sp~~~~Lasgs~-Dg~V~iWD~~~-~~~~~---~~~~-------~h~~------~V~sl~-fsp~g~~ll~s~s~Dg--- 746 (847)
+|+|++|++++. +++|.+|+++. .+... ..+. +|.. .+..++ |+|+|++++++...++
T Consensus 201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~ 280 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL 280 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence 999999988774 78999998763 13322 1221 2222 588999 9999997765554333
Q ss_pred --cEEEEECC-CCceEEE---EeeCCceEEEEEec----CCCEEEEEcC-CCcEEEEcCC
Q 003106 747 --EIRYWSIN-NGSCTRV---FKVESFCCWCVNAM----NRPCLWDKLD-AGDIQISDSL 795 (847)
Q Consensus 747 --~V~iWD~~-~~~~~~~---~~~~~~~v~~~~~~----~~~~l~~~~~-~g~i~i~d~~ 795 (847)
.|++||+. +++.... +..+...+..+.+. +...++.... ++.|.+|+..
T Consensus 281 ~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 89999996 5665432 22222222223332 3556776665 4889999754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=166.44 Aligned_cols=226 Identities=11% Similarity=0.012 Sum_probs=160.8
Q ss_pred cceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccC--------CCC-CceEEeee-cCC---CCCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDG--------SLD-DNVESFLS-HDD---TDPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g--------~~d-~~v~~~~s-~d~---t~~~d~~v~vw 620 (847)
....+|+|||+.++..... .+||+....+. .+. ... ... ....+.++ +|+ ....++.+.+|
T Consensus 247 ~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~---~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~ 322 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIE---IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQ 322 (1045)
T ss_dssp SCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECC---CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEE
T ss_pred cceeeEcCCCCEEEEEeCCEEEEecCCceEee-eec---cCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEE
Confidence 4567999999988776544 56776333221 111 100 000 11223344 454 11226789999
Q ss_pred eccCCceeeEeEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 621 DVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAV-LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~-~V~~l~fspdg~~Lasgs~Dg~V~-vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
++.++. ...+..|.. .+.+++|+ ||+.|++++.+..|. +||+.+++.. .+..|...+.+++|+|||++|+++
T Consensus 323 ~~~~~~----~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 323 DVSGTY----VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp CTTSSB----EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEE
T ss_pred cCCCCc----eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEE
Confidence 988762 234567777 89999999 999999999988898 9999877654 444788899999999999999999
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC---------CcEEEEECCCCceEEEEeeCCceE
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---------GEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D---------g~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+.|+.|++||+.+ +.....+.+|...|.+++|+|+|+++++++..+ +.|++||+.+++ +..+..+...+
T Consensus 397 ~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 397 NDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp ETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred CCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 9999999999998 666677778999999999999999766444322 489999999887 66666676666
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEc
Q 003106 770 WCVNAMNR-PCLWDKLDAGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~-~~l~~~~~~g~i~i~d 793 (847)
.++.+..+ ..++..+..+...+|+
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCceEcCCCCEEEEEecccCCcCcc
Confidence 66666543 4566666655555554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=167.32 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=129.8
Q ss_pred ceEEEecCCCeEeecC--CCeEEeCCCCchhhccccccccCCCCCceEEeeecCCC----C---------CCCCcEEEEe
Q 003106 557 PLMMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT----D---------PRDAGGRGMD 621 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~--~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t----~---------~~d~~v~vwd 621 (847)
..+.|+|||++++.+. ...+||+.+++....+...... . .......+++|+. + ..++.+++||
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK-S-VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH-T-TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc-c-cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 4678999997665543 3488999988764432211000 0 0012223444441 1 2368999999
Q ss_pred ccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCe-----------------
Q 003106 622 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLI----------------- 683 (847)
Q Consensus 622 ~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I----------------- 683 (847)
+.++.... ...+ ...|.+++|+|||++||++. |+.|++||+.+++..... .++...|
T Consensus 97 ~~~g~~~~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 97 LSNGEFVR-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTTTEECC-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCCCcccc-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 99873210 0112 25688999999999999986 789999999887765432 2333323
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCCceE---E-----Eecc
Q 003106 684 TDVRFSPSMPRLATSSFDK----------------------------------TVRVWDADNPGYSL---R-----TFMG 721 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg----------------------------------~V~iWD~~~~~~~~---~-----~~~~ 721 (847)
.+++|+|||++|++++.|. +|++||+.+ +..+ . .+.+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHT
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCC
Confidence 4899999999999887652 789999987 4332 1 2346
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCC----CcEEEEE----CCCCceEEEE
Q 003106 722 HSASVMSLDFHPNKDDLICSCDGD----GEIRYWS----INNGSCTRVF 762 (847)
Q Consensus 722 h~~~V~sl~fsp~g~~ll~s~s~D----g~V~iWD----~~~~~~~~~~ 762 (847)
|...+.+++|+||+. ++++.... ..|.+|| +.++++...+
T Consensus 251 ~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 251 SDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 888899999999964 66554322 2488999 8888766555
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=159.64 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=125.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
.++.+.+||+.++ ..+.+. .+.. .+++|+|||++|++++.| +.|++||+++++.. .+..|...+.+++|
T Consensus 130 ~~~~~~l~d~~~g-~~~~l~---~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 130 TEDRVALYALDGG-GLRELA---RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI 202 (582)
T ss_dssp CSSCEEEEEEETT-EEEEEE---EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEE
T ss_pred CCCCceEEEccCC-cEEEee---cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceE
Confidence 3445559999887 222222 2222 789999999999988877 78999999988764 67788899999999
Q ss_pred cCCCCEEEEEeCCC--cEEEEECCCCCceEEEeccCCCCeEEEE--------EecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 689 SPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLD--------FHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 689 sp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~V~sl~--------fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
+|||+.|+++..|+ .|++||+.+ +... .+.+|...|..++ |+||| .++++++.|++++||++ +++
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe
Confidence 99999999888888 899999997 5555 7778887777777 99999 68889999999999999 665
Q ss_pred EEEEeeCCceEEEEEecCCCEEEEEcCCC---cEEEEcC
Q 003106 759 TRVFKVESFCCWCVNAMNRPCLWDKLDAG---DIQISDS 794 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~~~~~l~~~~~~g---~i~i~d~ 794 (847)
+. .....+.++.+.+...++....+. .+.+++.
T Consensus 278 ~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 278 VE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 54 233456666655444444444443 3555553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-12 Score=137.85 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=139.2
Q ss_pred cEEEEecc-CCceeeEeEEeecCCCCEEEEEEcCCCCE--EEEEe-------------CCCcEEEEECC-CCceeEEEc-
Q 003106 616 GGRGMDVS-QGFSFKEANSVRASTSKVICCHFSSDGKL--LATGG-------------HDKKAVLWHTD-TLKSKTNLE- 677 (847)
Q Consensus 616 ~v~vwd~~-~~~~~~~~~~l~~h~~~V~~l~fspdg~~--Lasgs-------------~Dg~V~vwd~~-~~~~~~~l~- 677 (847)
.+.+||+. ++ .+..+.....+ +.+.+++|+|||++ |++++ .+++|++|+++ +++....+.
T Consensus 61 ~v~~~~~~~~g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~ 138 (365)
T 1jof_A 61 KWSSFAVKSPT-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN 138 (365)
T ss_dssp EEEEEEEEETT-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE
T ss_pred eEEEEEECCCC-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee
Confidence 79999987 66 33322222222 23667999999994 55553 68999999997 466554443
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCCce--EEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 678 ---EHSSLITDVRFSPSMPRLATSSF-DKTVRVWDAD-NPGYS--LRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 678 ---~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~-~~~~~--~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
.+...+.+++|+|+|++|++++. ++.|++||++ + +.. +..+. .|...+..++|+|+|+++++++..++.|
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC-CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 25567999999999998887764 6899999998 5 433 22333 2456799999999999777666668899
Q ss_pred EEEECC--CCceEE---EEeeC-------Cc------eEEEEE-ecCCC-EEEEEcCC-C-----cEEEEcCCcccceee
Q 003106 749 RYWSIN--NGSCTR---VFKVE-------SF------CCWCVN-AMNRP-CLWDKLDA-G-----DIQISDSLFINANIF 802 (847)
Q Consensus 749 ~iWD~~--~~~~~~---~~~~~-------~~------~v~~~~-~~~~~-~l~~~~~~-g-----~i~i~d~~~~~~~~~ 802 (847)
.+|++. +++... .+... .. .+..+. +..+. .++....+ . .|.+|+... ...+.
T Consensus 218 ~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~ 296 (365)
T 1jof_A 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIE 296 (365)
T ss_dssp EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEE
T ss_pred EEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEE
Confidence 999875 565432 22211 11 466666 65443 55554432 2 799998542 11111
Q ss_pred e--cccccCCCCccccccccccccC--CCcEEEEEeC-CCeEEEEEcc
Q 003106 803 C--GLGWYGSDEIPAPSWKVSCRSC--RECCLYTGCG-DSSLSSFIAG 845 (847)
Q Consensus 803 ~--~~~~~~~~~~~~~~w~~~~~~~--~~~~l~sGs~-DG~V~vW~~g 845 (847)
. ............ +.+.+. ++.+|++++. ++.|+||++.
T Consensus 297 ~~~~~~~~~~~~~~~----~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 297 KQLFLSPTPTSGGHS----NAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEEEECSSCCTTC----CCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EeeeeeecCCCCccc----ceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 1 000001111122 222232 5778888876 4999999874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-12 Score=138.09 Aligned_cols=191 Identities=16% Similarity=0.060 Sum_probs=124.5
Q ss_pred EEEecCCCeEeecCC-C-----eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 559 MMFGTDGAGTLTSPS-N-----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 559 v~~s~dG~~~~~~~~-~-----~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
.+|+|||++++.... + .+||+.+++....... .........+++|+ ....+..+.+||+.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-- 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-- 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 579999998877554 2 4568777765432211 11111112334444 22345689999999872
Q ss_pred eEeEEeecCCCCEEEEE--EcCCCCEEEEE----------------------eCCCcEEEEECCCCceeEEEccCCCCeE
Q 003106 629 KEANSVRASTSKVICCH--FSSDGKLLATG----------------------GHDKKAVLWHTDTLKSKTNLEEHSSLIT 684 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~--fspdg~~Lasg----------------------s~Dg~V~vwd~~~~~~~~~l~~h~~~I~ 684 (847)
....+..+...+.... +++|+++|+.. +.+..|++||+.+++.. .+..+...+.
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~ 191 (388)
T 3pe7_A 114 -ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLG 191 (388)
T ss_dssp -EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEE
T ss_pred -ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCcccc
Confidence 3333445555554444 48999998753 24468999999988654 4446677899
Q ss_pred EEEEcC-CCCEEEEEeCC------CcEEEEECCCCCceEEEeccCC--CCeEEEEEecCCCeEEEEEeCCC----cEEEE
Q 003106 685 DVRFSP-SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDG----EIRYW 751 (847)
Q Consensus 685 ~v~fsp-~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~h~--~~V~sl~fsp~g~~ll~s~s~Dg----~V~iW 751 (847)
.++|+| +++.|+.+..+ ..|.+||+.. + ....+..+. ..+..++|+|+|+.+++.+..++ .|++|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 999999 99988877753 3688888765 3 344454444 35788999999997765554332 39999
Q ss_pred ECCCCceEE
Q 003106 752 SINNGSCTR 760 (847)
Q Consensus 752 D~~~~~~~~ 760 (847)
|+.+++...
T Consensus 270 d~~~g~~~~ 278 (388)
T 3pe7_A 270 DPETLENRQ 278 (388)
T ss_dssp CTTTCCEEE
T ss_pred ecCCCceEE
Confidence 999987543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-10 Score=123.07 Aligned_cols=231 Identities=9% Similarity=0.128 Sum_probs=153.6
Q ss_pred CcceEEEecCCCeEeecC---CCeEEeCCCCchhhccccccc-cCCCCCceEEee-ecCC----CCC-CCCcEEEEeccC
Q 003106 555 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVE-DGSLDDNVESFL-SHDD----TDP-RDAGGRGMDVSQ 624 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~---~~~iWD~~~~~~~~~~~~~~~-~g~~d~~v~~~~-s~d~----t~~-~d~~v~vwd~~~ 624 (847)
....++++++|...+++. ...+||.. +.....+..... .+.+.....+.+ ..++ ++. .++.|.+||. +
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C
Confidence 346778899998766643 23678876 333222211000 011111111122 1222 121 2678999994 3
Q ss_pred CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 625 GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 625 ~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+ +.+..+. .+...+.+|+++++|+++++...++.|++||.+ ++.+..+. .+...+.+|+|+++++.+++...+
T Consensus 109 g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 109 G---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp S---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred C---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4 2333332 345679999999999988888888999999965 56666654 345678999999999877777789
Q ss_pred CcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCCC-cEEEEECCCCceEEEEeeCCc--eEEEEEecC
Q 003106 702 KTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDG-EIRYWSINNGSCTRVFKVESF--CCWCVNAMN 776 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD~~~~~~~~~~~~~~~--~v~~~~~~~ 776 (847)
+.|++||.. +..+..+..+ ...+.+|+++++|. ++++...++ .|++||. +++.+..+..+.. .+..+.+..
T Consensus 185 ~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 999999985 3556666433 36789999999985 666777675 9999995 4667777765433 366777777
Q ss_pred CCEEEEEcCCCcEEEEcCC
Q 003106 777 RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~ 795 (847)
...+|....++.|.+|+..
T Consensus 261 ~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 261 DGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp TTEEEEEETTTEEEEEECS
T ss_pred CCcEEEECCCCeEEEEEcc
Confidence 7778877778889999743
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=122.64 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=145.5
Q ss_pred CCCcEEEEeccCCceeeEeEEe---ecCCCCEEEEEEc-CCCCEEEEEeC-CCcEEEEECCCCceeEEEc-cCCCCeEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSV---RASTSKVICCHFS-SDGKLLATGGH-DKKAVLWHTDTLKSKTNLE-EHSSLITDV 686 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l---~~h~~~V~~l~fs-pdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v 686 (847)
.++.|.+||.... ....+... .+|...+.++++. ++++++++... ++.|++|| .+++.+..+. .+...+.+|
T Consensus 49 ~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 49 NNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGV 126 (286)
T ss_dssp GGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEE
T ss_pred CCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEE
Confidence 4567888987633 22221110 2345678999994 67766666643 88999999 5577776664 344678999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 687 ~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+++++++.+++...++.|++||.. +..+..+. ++...+.+|+|+++|. ++++...++.|++||.. ++.+..+..
T Consensus 127 ~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~ 202 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG 202 (286)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred EEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence 999999877777788999999975 34555553 4556789999999976 67677778999999974 566666654
Q ss_pred CC--ceEEEEEecCCCEEEEEcC-CC-cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEE
Q 003106 765 ES--FCCWCVNAMNRPCLWDKLD-AG-DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLS 840 (847)
Q Consensus 765 ~~--~~v~~~~~~~~~~l~~~~~-~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~ 840 (847)
.. ..+..+.++....+|.... ++ .|.+|+.... .+........ ....+.+...+ ++.++++ +.|+.|+
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~---~~~~~~~~~~---~~~~~~i~~~~-~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ---LISALESKVK---HAQCFDVALMD-DGSVVLA-SKDYRLY 274 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---EEEEEEESSC---CSCEEEEEEET-TTEEEEE-ETTTEEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---EEEEEcccCC---CCcceeEEECC-CCcEEEE-CCCCeEE
Confidence 42 4567777776667776654 43 8999985422 1211111111 11123344444 4566666 6799999
Q ss_pred EEEcc
Q 003106 841 SFIAG 845 (847)
Q Consensus 841 vW~~g 845 (847)
+|+..
T Consensus 275 v~~~~ 279 (286)
T 1q7f_A 275 IYRYV 279 (286)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-11 Score=143.74 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=112.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CceeEEEc-cCCCCeEEEEEcCCCCEEEEEe
Q 003106 637 STSKVICCHFSSDGKLLATGGHD----------KKAVLWHTDT------LKSKTNLE-EHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~D----------g~V~vwd~~~------~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs 699 (847)
|...+.+++|+|||++|++++.| ..|++||+++ ++. ..+. .+...+.+++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence 67789999999999999999877 5899999987 444 4555 6667889999999999998877
Q ss_pred CC--------CcEEEEECCCCC---ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCceEEEEeeCC
Q 003106 700 FD--------KTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 700 ~D--------g~V~iWD~~~~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD~~~~~~~~~~~~~~ 766 (847)
.+ ..|++||+...+ .......+|...+..++|+|||+ ++++++.|+ .|.+||+.+++....+..+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence 55 379999998324 34444455678899999999998 777888888 66666776776554443332
Q ss_pred ce--------EEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 767 FC--------CWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 767 ~~--------v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.. +.++.+. +...++.... +.+.+|.
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred cccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 21 2334443 4456666666 7777774
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=149.72 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=128.4
Q ss_pred cceEEEecCCCeEeec-CCCeEEeCCCCchhhccccccccCCCCCce-EEeeecCCC-------------CCCCCcEEEE
Q 003106 556 KPLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDDT-------------DPRDAGGRGM 620 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~-~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~t-------------~~~d~~v~vw 620 (847)
...+.|++||.+++.+ +...+||+.+++....+...... .+.... ...+++|+. -...+.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTT-TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhh-hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4578999999888765 23388999988754322211000 000000 012344431 1112567799
Q ss_pred eccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCe----------------
Q 003106 621 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLI---------------- 683 (847)
Q Consensus 621 d~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I---------------- 683 (847)
|+.++. ...+..|.+.+..++|||||+.||.+. |+.|++||+.+++.... ..++...|
T Consensus 98 d~~~~~----~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 98 DLNKRQ----LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp ETTTTE----ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred ECCCCc----EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 999872 334667888999999999999999985 68999999988775432 22333323
Q ss_pred -EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---CCc-eEEEec--
Q 003106 684 -TDVRFSPSMPRLATSSFDK------------------------------------TVRVWDADN---PGY-SLRTFM-- 720 (847)
Q Consensus 684 -~~v~fsp~~~~Lasgs~Dg------------------------------------~V~iWD~~~---~~~-~~~~~~-- 720 (847)
..+.|||||++||.++.|. +|+|||+.+ ... ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999998876332 478888876 421 233333
Q ss_pred ----cCCCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCCc
Q 003106 721 ----GHSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGS 757 (847)
Q Consensus 721 ----~h~~~V~sl~fsp~g~~ll~s~s~---Dg~V~iWD~~~~~ 757 (847)
+|...|..++|+|||+.+++.... +..|++||+.+++
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 377889999999998855433332 2479999999987
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-11 Score=141.46 Aligned_cols=161 Identities=9% Similarity=-0.039 Sum_probs=112.9
Q ss_pred CcEEEEeccC------CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECC-CC---ceeEE
Q 003106 615 AGGRGMDVSQ------GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDK--------KAVLWHTD-TL---KSKTN 675 (847)
Q Consensus 615 ~~v~vwd~~~------~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg--------~V~vwd~~-~~---~~~~~ 675 (847)
..|.+||+.+ + . ...+. .+...+.+++|+|||++|+.++.++ .|++||++ ++ +....
T Consensus 161 ~~i~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRS-A---VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEETTSTTTTCGG-G---SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEEECCCCccccCC-c---eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 5788999987 4 2 23444 5667888999999999999887553 79999999 56 44444
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEeccCCCC--------eEEEEEecCCCeEEEEEeCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSAS--------VMSLDFHPNKDDLICSCDGD 745 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~h~~~--------V~sl~fsp~g~~ll~s~s~D 745 (847)
..+|...+.+++|+|||+++++++.|+ .|.+||+.+ +........+... +.+++|++++. ++++++.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~- 313 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK- 313 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-
Confidence 455678899999999999778888888 566666654 4433333333222 56788998876 6668887
Q ss_pred CcEEEE--ECCCCceEEEEeeCCceEEEE-EecCCCEEEEE
Q 003106 746 GEIRYW--SINNGSCTRVFKVESFCCWCV-NAMNRPCLWDK 783 (847)
Q Consensus 746 g~V~iW--D~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~ 783 (847)
+.++|| |+.+++ +..+..+...+..+ ..+....++..
T Consensus 314 ~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~ 353 (662)
T 3azo_A 314 GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVA 353 (662)
T ss_dssp SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEE
T ss_pred CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEE
Confidence 999999 655555 66777666666666 55555444443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-10 Score=123.15 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=146.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-----CCeEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-----SLITDVR 687 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-----~~I~~v~ 687 (847)
.++.|.+||..++ +.+.++. .......++|+++++++++...++.|.+||..+++.+..+.... .....|+
T Consensus 62 ~~~~v~viD~~t~---~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~ 137 (328)
T 3dsm_A 62 NSHVIFAIDINTF---KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV 137 (328)
T ss_dssp GGTEEEEEETTTC---CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE
T ss_pred CCCEEEEEECccc---EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE
Confidence 4678999999977 3444443 34678999999998555554489999999999999887776433 1456777
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC----------CcEEEEECCC
Q 003106 688 FSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD----------GEIRYWSINN 755 (847)
Q Consensus 688 fsp~~~~Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D----------g~V~iWD~~~ 755 (847)
+ ++..|+.++ .+++|.+||+.+ +..+.++.. ......++++++|+ +++++..+ +.|.+||.++
T Consensus 138 ~--~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 138 Q--YGKYVYVNCWSYQNRILKIDTET-DKVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET 212 (328)
T ss_dssp E--ETTEEEEEECTTCCEEEEEETTT-TEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred E--ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC
Confidence 7 455665555 489999999998 666666653 33467899999987 55565544 7899999999
Q ss_pred CceEEEEeeC-CceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE
Q 003106 756 GSCTRVFKVE-SFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 756 ~~~~~~~~~~-~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG 833 (847)
++.+..+... ......++++. ...+|.... .|.++|...... . ........ ....+.+...+.++.++++.
T Consensus 213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~--~-~~~~~~~~--~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV--P-VRPFLEFR--DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC--C-SSCSBCCC--SSCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce--e-eeeeecCC--CCceEEEEEcCCCCeEEEEc
Confidence 9888777653 23566777764 566776654 788888543221 1 11111100 12344555555566777777
Q ss_pred ----eCCCeEEEEEc
Q 003106 834 ----CGDSSLSSFIA 844 (847)
Q Consensus 834 ----s~DG~V~vW~~ 844 (847)
..++.|.+|+.
T Consensus 286 ~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSP 300 (328)
T ss_dssp CTTSSSEEEEEEECT
T ss_pred ccccccCCEEEEECC
Confidence 67899999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-10 Score=137.04 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=119.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCcee--EEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK----------------AVLWHTDTLKSK--TNL 676 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~----------------V~vwd~~~~~~~--~~l 676 (847)
..|++||+.++.... . ++.. ..+.+++|+|||+.|+.++.|+. |++|++.++... ..+
T Consensus 151 ~~i~v~d~~tg~~~~-~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 151 VTIKFMKVDGAKELP-D-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEEETTTTEEEE-E-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEEECCCCCCCc-c-cccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 367888888773222 1 2221 22678999999999999988876 999999887632 223
Q ss_pred c--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------CCceEEEeccCCCCeEEEEEecCCCeEEEEEe
Q 003106 677 E--EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 677 ~--~h~~~I~~v~fsp~~~~Lasgs~-----Dg~V~iWD~~~------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
. .|...+.++.|+|||++|+.++. +..|++||+.+ +...+..+..+...+.. .|+++|+.+++.+.
T Consensus 227 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence 3 35566889999999999887764 56899999975 33245666667666655 48899988776665
Q ss_pred CC---CcEEEEECCCCc--eEEEEeeCCc--eEEEEEec-CCCEEEEEcCCCc--EEEEcC
Q 003106 744 GD---GEIRYWSINNGS--CTRVFKVESF--CCWCVNAM-NRPCLWDKLDAGD--IQISDS 794 (847)
Q Consensus 744 ~D---g~V~iWD~~~~~--~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~~g~--i~i~d~ 794 (847)
.+ +.|.+||+.++. ....+..+.. .+..+.+. +...++....++. |.+|+.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 44 379999998874 2344444433 56666655 5556667777775 444553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=128.78 Aligned_cols=195 Identities=10% Similarity=0.013 Sum_probs=119.2
Q ss_pred ceEEEecCCCeEeecCC----C--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCc
Q 003106 557 PLMMFGTDGAGTLTSPS----N--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~----~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
..++|+|||+.++.... . .+||+.+++...... +........++++|+ ....++.+.+||+.++.
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 44578999998765422 2 456877765432111 000000102223333 12234479999998772
Q ss_pred eeeEeEEeecCCCCEEE-------------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEccCCCC
Q 003106 627 SFKEANSVRASTSKVIC-------------------CHFSSDGKLLATG-----GHDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~-------------------l~fspdg~~Lasg-----s~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
.+. .+..+.....+ ++|+||++.++.+ ..+..|++||+.+++..... .+...
T Consensus 114 -~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~ 189 (396)
T 3c5m_A 114 -EQV--IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW 189 (396)
T ss_dssp -EEE--EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred -cEE--EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence 222 22333333333 4567788776654 35678999999988765544 56778
Q ss_pred eEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCCceEEEeccC--CCCeEEEEEecCCCeEEEEEeCC----CcEE
Q 003106 683 ITDVRFSP-SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGD----GEIR 749 (847)
Q Consensus 683 I~~v~fsp-~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~D----g~V~ 749 (847)
+..+.|+| +++.|+.++.+ ..|.+||+.. +. +..+..+ ...+..++|+|+|+.+++++..+ +.|+
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 99999999 78877766543 4688888875 33 3333333 23578899999998776554332 3499
Q ss_pred EEECCCCceEEEE
Q 003106 750 YWSINNGSCTRVF 762 (847)
Q Consensus 750 iWD~~~~~~~~~~ 762 (847)
+||+.+++.....
T Consensus 268 ~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 268 KANPETLENEEVM 280 (396)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEECCCCCeEEee
Confidence 9999988755443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-10 Score=123.74 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=124.0
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCceeEEEccCCCCeEEEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---K--KAVLWHTDTLKSKTNLEEHSSLITDVRF 688 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g--~V~vwd~~~~~~~~~l~~h~~~I~~v~f 688 (847)
+..+.+||+.++. .+. + ..+.+++|+|||++|+.++.+ + .|.+||+.+++.......+ . |.+++|
T Consensus 42 ~~~l~~~d~~~~~-~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNA-RRF---I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCC-EEE---E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCc-eEE---c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence 4567788888762 222 2 468899999999999988754 3 3888898887765554433 3 999999
Q ss_pred cCCCCEEEEEeCC---------------------------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 689 SPSMPRLATSSFD---------------------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 689 sp~~~~Lasgs~D---------------------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+|+++.|+.++.+ ..|++||+.+ +..+..+.. . .+..++|+|+| ++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-EEVIEEFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT-TEEEEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC-CeEEeeecC-C-CcccccCCCCe--EEEE
Confidence 9999998887632 5699999987 554344444 3 78899999998 5556
Q ss_pred EeCCC-------cEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCC-------CcEEEEcCCcccceeeecccc
Q 003106 742 CDGDG-------EIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDA-------GDIQISDSLFINANIFCGLGW 807 (847)
Q Consensus 742 ~s~Dg-------~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~-------g~i~i~d~~~~~~~~~~~~~~ 807 (847)
+..++ ...||.+.+++... +..+ ..+..+..++...++..... ..|.+|+ . .. ......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~--~~~l~~- 259 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEK-MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-G-KE--VMGILD- 259 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEE-EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-S-SC--EEESST-
T ss_pred EecccccccccccccEEEeCCCceEE-eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC-C-Cc--eEeccc-
Confidence 65442 34555444555433 3333 44444543444444444332 3577776 1 11 111110
Q ss_pred cCCCCccc-cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 808 YGSDEIPA-PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 808 ~~~~~~~~-~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.....+.. ..|+ ++ ++++++.|+.++|| +
T Consensus 260 ~~~~~~~~~~~~s------dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 260 EVDRGVGQAKIKD------GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp TCCSEEEEEEEET------TE-EEEEEEETTEEEEE-E
T ss_pred cCCcccCCccEEc------Cc-EEEEEecCCcEEEE-E
Confidence 01111111 2232 34 88899999999999 6
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=141.28 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCC-----EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSK-----VICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEH 679 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h 679 (847)
|+.|++||+.++. +...+.+|... ..+++|||||++|+.++.+ +.+.|||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGN---SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI 110 (740)
T ss_dssp TTEEEEEETTTCC---EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred CCcEEEEECCCCc---eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence 7899999999883 34446666533 2458899999999999876 55679999988765 46677
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----------------EEEEEecCCCeEEEEE
Q 003106 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSC 742 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----------------~sl~fsp~g~~ll~s~ 742 (847)
...+..++|||||+.||.+. |+.|++||+.+......+..++...+ .++.|+|||+.|++..
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88899999999999998885 78999999987332222233333323 3589999999766443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-10 Score=120.95 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=139.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fs 689 (847)
++.|.+||..++ ...+..+...+.+++|+++|+++++...++.|.+||..+++....+... ...+.+++++
T Consensus 49 ~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 123 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA 123 (296)
T ss_dssp GTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC
T ss_pred CCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC
Confidence 456778887754 2344557788999999999998888777889999999887765443322 2346789999
Q ss_pred CCCCEEEEEeC-----------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 690 PSMPRLATSSF-----------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 690 p~~~~Lasgs~-----------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
++|+++++.+. .+.|..||.. + .+..+..+...+..++|+|+++.+ ++.+.++.|.+||
T Consensus 124 ~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~ 199 (296)
T 3e5z_A 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYC 199 (296)
T ss_dssp TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEE
T ss_pred CCCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEE
Confidence 99998887321 2345555443 2 344555667778999999999876 7888889999999
Q ss_pred CC-CCce---EEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 753 IN-NGSC---TRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 753 ~~-~~~~---~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+. +++. ...+......+..+.++....+|.+. ++.|.+|+... ..+...... .. ... +.+...++.
T Consensus 200 ~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g---~~~~~~~~~-~~-~~~----~~f~~~d~~ 269 (296)
T 3e5z_A 200 LNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG---DELGRVLTP-QT-TSN----LCFGGPEGR 269 (296)
T ss_dssp ECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS---CEEEEEECS-SC-CCE----EEEESTTSC
T ss_pred ECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC---CEEEEEECC-CC-cee----EEEECCCCC
Confidence 97 5554 33443333445567777777899888 78899998642 122221111 11 222 222233567
Q ss_pred EEEEEeCCCeEEE
Q 003106 829 CLYTGCGDSSLSS 841 (847)
Q Consensus 829 ~l~sGs~DG~V~v 841 (847)
.|++++.++.+++
T Consensus 270 ~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 270 TLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEcCCeEEEE
Confidence 7888888764443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=118.18 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=123.5
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEc--cCCCCeEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLE--EHSSLITD 685 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~--~h~~~I~~ 685 (847)
..++.|.+||..++ .+.. .+..+...|.+++|+++|++++++..+ +.|.+||.++++....+. .+...+.+
T Consensus 63 ~~~~~i~~~d~~~~-~~~~--~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 63 VFEGNIFKINPETK-EIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTTCEEEEECTTTC-CEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCCEEEEEeCCCC-cEEE--EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 34678999998876 2222 223466789999999999988887766 689999998777654443 34467999
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-Cce
Q 003106 686 VRFSPSMPRLATSSF------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC 758 (847)
Q Consensus 686 v~fsp~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~ 758 (847)
++|+|+++++++... .+.|.+||..+ +. +..+..+...+..++|+|+++.++++.+.++.|.+||+++ +..
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 999999987776653 24566666554 23 3333333456889999999987777777788999999974 333
Q ss_pred EEEE-----ee--CCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 759 TRVF-----KV--ESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~-----~~--~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
+..+ .. ....+..+.++....+|.+. .++.|.+|+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 218 IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred cccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 3221 11 11356677777777788776 45789999863
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=126.72 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=123.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEccC--
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH-- 679 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h-- 679 (847)
..|+.|.+||..++ +.+..+..+..+ .++|+|||++|++++. |++|.+||+.+++.+.++...
T Consensus 28 ~~d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 28 LTESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GGGCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred cccCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 34778999998877 345566665554 8999999999999863 678999999999998887643
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 680 ----SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 680 ----~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
......++|+|+|++|+++.. +++|.+||+.+ +..+.+ +. +. ....+.+.|++...+++.+.||.+.+|+
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 345678999999999988874 68999999998 666666 43 22 2344678888766777888999999999
Q ss_pred CCC-CceEEEE------eeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 753 INN-GSCTRVF------KVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 753 ~~~-~~~~~~~------~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+.. ++..... ......+..........+|....++.+.+++..
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred ECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEec
Confidence 976 5544222 111111111111122345555667788888854
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-10 Score=122.84 Aligned_cols=201 Identities=8% Similarity=0.078 Sum_probs=123.4
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---------------------------KKAVLWHTD 668 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---------------------------g~V~vwd~~ 668 (847)
.+.+||+.++ ....+ .. +.. |.+++|+|||+.|+.++.+ ..|++||+.
T Consensus 86 ~l~~~~~~~g-~~~~l--~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETL-SSKKI--LE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTT-EEEEE--EE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCC-ceEEE--Ec-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 4677788766 22222 22 223 9999999999999888642 579999999
Q ss_pred CCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEE
Q 003106 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICS 741 (847)
Q Consensus 669 ~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg-------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 741 (847)
+++.+..+.. . .+.+++|+|+| +++++..++ ...||.+++ +.. ..+..+ ..+..+ +|+|+.+++.
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~-~~l~~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-GKE-EKMFEK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-TEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC-Cce-EEeccC-cceeeE--CCCCCEEEEE
Confidence 8877455554 3 78999999999 777776542 445555543 443 344344 455544 9999877655
Q ss_pred EeCC-------CcEEEEECCCCceEEEEeeCCceEEE-EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCc
Q 003106 742 CDGD-------GEIRYWSINNGSCTRVFKVESFCCWC-VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEI 813 (847)
Q Consensus 742 ~s~D-------g~V~iWD~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~ 813 (847)
+..+ ..|.+|| +++....+..+...+.. +.+. +..++.+..++.+.+| .. ......... +...+
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~--~g~~~~~~~--~~~~v 304 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW--DGEIKPIAK--GRHWI 304 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EE--SSSEEEEEC--SSSEE
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-Ec--CCceEEEec--CCCeE
Confidence 5332 4688888 56554444444555654 5555 3377777888888888 54 222211111 11122
Q ss_pred cccccccccccCCCcEEEEEeCCCeE-EEEEc
Q 003106 814 PAPSWKVSCRSCRECCLYTGCGDSSL-SSFIA 844 (847)
Q Consensus 814 ~~~~w~~~~~~~~~~~l~sGs~DG~V-~vW~~ 844 (847)
....|+ + .++++++.++.. .||.+
T Consensus 305 ~~~~~s----~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 305 MGFDVD----E---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEES----S---SEEEEEECSSSCCEEEEE
T ss_pred Eeeeee----C---cEEEEEcCCCChHHheEe
Confidence 222232 3 577777777765 77764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=125.04 Aligned_cols=165 Identities=12% Similarity=-0.032 Sum_probs=115.5
Q ss_pred eEeEEeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 003106 629 KEANSVRASTSKVIC-----CHFSSDGKLLATGGH-DKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~-----l~fspdg~~Lasgs~-Dg~--V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~ 700 (847)
..+..+..|...+.. .+|+|||++|+.++. ++. |.+||+.+++......++...+.+++|+||++.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 455666677766666 899999999999887 664 888899988887776677666667889999999999999
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEE--EecCCCeEEEEE---------------------eCCCcEEEEECCCCc
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLD--FHPNKDDLICSC---------------------DGDGEIRYWSINNGS 757 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~--fsp~g~~ll~s~---------------------s~Dg~V~iWD~~~~~ 757 (847)
++.|++||+.+ +.....+..+...+.... +++++..+++.. ..+..|.+||+.+++
T Consensus 101 ~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 101 GRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 99999999998 565555666666554444 488887554321 234689999999987
Q ss_pred eEEEEeeCCceEEEEEecC-C-CEEEEEcC------CCcEEEEcCC
Q 003106 758 CTRVFKVESFCCWCVNAMN-R-PCLWDKLD------AGDIQISDSL 795 (847)
Q Consensus 758 ~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~------~g~i~i~d~~ 795 (847)
..... .+...+..+.+.. + ..++.... ...|.+++..
T Consensus 180 ~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 180 STVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp EEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred eEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 55444 3444455555554 3 23333332 2256666643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-10 Score=135.78 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=118.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCc----eeE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-------------AVLWHTDTLK----SKT 674 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------------V~vwd~~~~~----~~~ 674 (847)
..+..|++||+.++.... ...+... ...+++|+|||+.|+.++.|.. |++|++.++. ++.
T Consensus 144 ~~~~~i~v~dl~tg~~~~-~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSK-VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp CSCCEEEEEETTTCCBCS-SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CceEEEEEEECCCCCCcC-CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 345677888887773210 1111111 1267899999999999998876 9999999876 232
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe---CCCc
Q 003106 675 NLEEHSSLITDVRFSPSMPRLATSSFDK----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGE 747 (847)
Q Consensus 675 ~l~~h~~~I~~v~fsp~~~~Lasgs~Dg----~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s---~Dg~ 747 (847)
....|...+.++.|+|||++|+.++.++ .|++||..+ + ....+..+...+....| ++|. +++++. .++.
T Consensus 221 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 221 ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQR 296 (695)
T ss_dssp CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCE
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCE
Confidence 3334556899999999999998877665 677776654 3 34555556666777777 6666 665655 2588
Q ss_pred EEEEECCCCce---EEEEeeC-CceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 748 IRYWSINNGSC---TRVFKVE-SFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 748 V~iWD~~~~~~---~~~~~~~-~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
|.+||+.++.. ...+..+ ...+..+.+.+...++....++...+|.
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 99999988753 3344333 4456666666666777888888877765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-09 Score=114.30 Aligned_cols=175 Identities=13% Similarity=-0.012 Sum_probs=131.6
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-CCeEEEEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRF 688 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~f 688 (847)
+..++.|.+||.+++ +.+.++..+. ..+.+++++|+|++|+ +.++.|++||. +++.+..+..+. ..+.++.+
T Consensus 11 ~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 11 GSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp CTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred eCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 456789999999888 5666776665 5789999999999998 45788999999 799999988653 57899999
Q ss_pred cCCCCEEEEEeC-CCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE
Q 003106 689 SPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 689 sp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~ 761 (847)
.++|++|++.+. ++.|..+|.. ++.+..+.. +...+..+++.++|. ++++...++.|.+||.+ |+.+..
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CCEEEE
Confidence 999999999887 7777777763 566665541 222455677889987 55688889999999998 998888
Q ss_pred EeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 762 FKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+.............+...++....++.|..++..
T Consensus 161 ~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 161 VKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EECSSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred EECCCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 8765433333333345556666666778888855
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-09 Score=122.66 Aligned_cols=177 Identities=9% Similarity=0.006 Sum_probs=128.6
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEccCCCCeEEEEEc-
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS- 689 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~I~~v~fs- 689 (847)
.++.|.++|..++ +.+.++.. ...+.+++|+|||++|++++.|+.|.+||+. +++.+.++.... ....++|+
T Consensus 175 ~~~~V~viD~~t~---~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~ 249 (567)
T 1qks_A 175 DAGQIALIDGSTY---EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSK 249 (567)
T ss_dssp TTTEEEEEETTTC---CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECC
T ss_pred CCCeEEEEECCCC---eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcc
Confidence 4668889999877 44445543 3357799999999999999999999999996 888888887543 46799999
Q ss_pred ---CCCCEEEEEe-CCCcEEEEECCCCCceEEEecc----------------------C---------------------
Q 003106 690 ---PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMG----------------------H--------------------- 722 (847)
Q Consensus 690 ---p~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~----------------------h--------------------- 722 (847)
|||+++++++ .+++|.|||..+ .+.+.++.. |
T Consensus 250 ~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 250 MEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred ccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 6999887766 469999999887 444443321 0
Q ss_pred ------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-CCc-----eEEEEEecCCCEEEEEc
Q 003106 723 ------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV-ESF-----CCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 723 ------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~-~~~-----~v~~~~~~~~~~l~~~~ 784 (847)
......+.|+|+++++++++..+++|.+||+++++.+..+.. ... .+. +.......+|...
T Consensus 329 ~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~ 407 (567)
T 1qks_A 329 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATS 407 (567)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEE
T ss_pred CCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeC
Confidence 112335679999998888887889999999999998877765 221 222 2223345677654
Q ss_pred --CCCcEEEEcCCc
Q 003106 785 --DAGDIQISDSLF 796 (847)
Q Consensus 785 --~~g~i~i~d~~~ 796 (847)
.++.|.+++...
T Consensus 408 ~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 408 HMGDDSVALIGTDP 421 (567)
T ss_dssp BSSSSEEEEEECCT
T ss_pred CCCCCeEEEecCCC
Confidence 357899998653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-09 Score=114.38 Aligned_cols=197 Identities=7% Similarity=0.008 Sum_probs=132.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
+...+.+|+++++|+++++.. ++.|.+||.+.... ..+. .....+.+|+++++++.+++...++.|.+||..+ ...
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~ 141 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQ 141 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSC
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-cee
Confidence 335678999999999666665 88999999876543 3332 2336789999999998777777789999998765 322
Q ss_pred EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
..........+.+|+++++|. ++++...++.|.+||................+..+.++....+|... .++.|.+|+.
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 222223334678899999986 66677778899999998776544333333556777777665777665 4678999986
Q ss_pred CcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....... ....+. ...+.+...+ ++.++++...++.|++|+..
T Consensus 221 ~~~~~~~---~~~~~~----~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 221 GSTTSTV---LPFTGL----NTPLAVAVDS-DRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp TCSCCEE---CCCCSC----SCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred CCCccee---eccCCC----CCceeEEECC-CCCEEEEECCCCEEEEEcCC
Confidence 4322111 111111 1223333334 46788889999999999863
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-10 Score=134.63 Aligned_cols=198 Identities=10% Similarity=-0.034 Sum_probs=124.1
Q ss_pred cCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCceeEEEccCCCCe--EEEEEcCCCCEEEEEeCCCc-----
Q 003106 636 ASTSKVICCHFSSDGKLLA-----TGGHDKKAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSFDKT----- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~La-----sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I--~~v~fsp~~~~Lasgs~Dg~----- 703 (847)
+|...+.+++|||||++|| .|+.+.+|+|||+++++.+. ..+...+ .+++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666799999999999998 44455789999999988651 1122222 68999999999999998876
Q ss_pred --------EEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCC-C--cEEEEECCCCceEEEEeeCCceE
Q 003106 704 --------VRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-G--EIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 704 --------V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g--~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
|++|++.++.. .+.....|...+.++.|+|+|++++++...+ + .|++||..+++............
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987432 2333344566889999999999877555433 2 67777766665443333333333
Q ss_pred EEEEecCCCEEEEEc---CCCcEEEEcCCcccc---eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 770 WCVNAMNRPCLWDKL---DAGDIQISDSLFINA---NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~---~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
..+..++. .++... .++.|.+|+...... ..+.. ......+. .+.+. ++.++++...|+..+||.
T Consensus 276 ~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~----~~~~~--~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 276 EVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLL----SVSIV--GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp EEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEE----EEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEE----EEEEE--CCEEEEEEEECCEEEEEE
Confidence 33333333 333333 246788888543221 11111 00011111 12222 567899999999999986
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
+
T Consensus 347 ~ 347 (695)
T 2bkl_A 347 A 347 (695)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=111.51 Aligned_cols=176 Identities=6% Similarity=-0.050 Sum_probs=121.6
Q ss_pred CCcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
++.|.+||..... .. .+. .....+.+++++++|+++++...++.|.+||..+.............+.+|++++++
T Consensus 86 ~~~i~~~d~~~~~-~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 86 NNRVVTLAAGSNN-QT---VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp TTEEEEECTTCSC-CE---ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred CCEEEEEeCCCce-Ee---eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 6788899877642 11 222 233678999999999988887778999999876554433222333467899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
+.+++...++.|.+||... .........+...+.+|+++++| +++++...++.|.+||............+...+.++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp CEEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CEEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 8777766788999999886 33333333344678999999998 577677778899999997655433222233456677
Q ss_pred EecCCCEEE-EEcCCCcEEEEcCC
Q 003106 773 NAMNRPCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 773 ~~~~~~~l~-~~~~~g~i~i~d~~ 795 (847)
.++....+| +...++.|.+++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCC
T ss_pred EECCCCCEEEEECCCCEEEEEcCC
Confidence 766544455 45567788888754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-09 Score=113.16 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=118.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCC
Q 003106 638 TSKVICCHFSSDGKLLATGGHD------------------------KKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSM 692 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~D------------------------g~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~ 692 (847)
-+.|.+|+|+++|+++++...+ ++|++||.++++.+..+. ++-..+.+|+|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999898877664 444678999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEe---------ccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEE
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTF---------MGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~---------~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~ 762 (847)
+++++...++.|++||.......+..+ .++...+..|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987522245555 344557899999994445776776 689999999 567777777
Q ss_pred eeCC----------ceEEEEEecCC-CEEE-EEcCCCcEEEEcCC
Q 003106 763 KVES----------FCCWCVNAMNR-PCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 763 ~~~~----------~~v~~~~~~~~-~~l~-~~~~~g~i~i~d~~ 795 (847)
.... .....++++.. ..+| +...++.|.+|+..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 5332 22566776654 4444 55667789999865
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-09 Score=119.27 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
+.. |+.|+| |+++|+++ .++.|++||+.+......+..|...|.++.+.+. .|++++.||.|.+||+.+ +...
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~-~~~~ 159 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KSTK 159 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC-Cccc
Confidence 556 999999 99999999 8899999999987776777788888999888765 388899999999999997 4433
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce--EEEE------e---eCCceEEEEEecCCCEEE
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------K---VESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~l~ 781 (847)
. +...|+|++|+|+| ++.|..||+|++|+...+.+ .+++ . .+...|.++.+.....++
T Consensus 160 ~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp E----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred c----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 2 44689999999998 35788899999999988886 5566 2 256778888877555433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-09 Score=111.19 Aligned_cols=220 Identities=9% Similarity=0.009 Sum_probs=137.7
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
++.++.|. + +....+..+...+.+++|+++|++++++..++.|.+||.++++....+..+...|.+|+|+++++
T Consensus 26 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 26 ESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp GGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC
T ss_pred cccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc
Confidence 44556662 1 34555667778889999999999888888899999999998877655545677899999999998
Q ss_pred EEEEEeCC----CcEEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCceEEE
Q 003106 694 RLATSSFD----KTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRV 761 (847)
Q Consensus 694 ~Lasgs~D----g~V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~------Dg~V~iWD~~~~~~~~~ 761 (847)
++++...+ +.|.+||.++ +.....+. .+...+.+++|+|+|. ++++... ++.|..||..+++....
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTS-CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCC-CEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 77777666 6899999987 44332332 3456799999999986 5545543 24566667665554433
Q ss_pred EeeCCceEEEEEecCCC-EEEEE-cCCCcEEEEcCCcccc--eeeecccccCCCCccccccccccccCCCcEEEEEeCCC
Q 003106 762 FKVESFCCWCVNAMNRP-CLWDK-LDAGDIQISDSLFINA--NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDS 837 (847)
Q Consensus 762 ~~~~~~~v~~~~~~~~~-~l~~~-~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG 837 (847)
.. ....+..+.+..+. .+|.. ..++.|.+|+...... ..+.......... ......+...+ ++.++++...++
T Consensus 178 ~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~-~G~l~v~~~~~~ 254 (333)
T 2dg1_A 178 IQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDS-DDNLYVAMYGQG 254 (333)
T ss_dssp EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBT-TCCEEEEEETTT
T ss_pred ec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECC-CCCEEEEEcCCC
Confidence 32 22235556655443 45544 4567888888532111 1010000000000 00111122223 466677777788
Q ss_pred eEEEEEc
Q 003106 838 SLSSFIA 844 (847)
Q Consensus 838 ~V~vW~~ 844 (847)
.|.+|+.
T Consensus 255 ~v~~~d~ 261 (333)
T 2dg1_A 255 RVLVFNK 261 (333)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 9999975
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=130.52 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=125.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc-------
Q 003106 636 ASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~------- 703 (847)
+|...+.+++|||||++||.++.++ .|+|||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3545688999999999999876543 89999999998776433222 3678999999999999888766
Q ss_pred ---------EEEEECCCCCce-EEEec--cCCCCeEEEEEecCCCeEEEEEeC----CCcEEEEECCC------Cc-eEE
Q 003106 704 ---------VRVWDADNPGYS-LRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINN------GS-CTR 760 (847)
Q Consensus 704 ---------V~iWD~~~~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~----Dg~V~iWD~~~------~~-~~~ 760 (847)
|++|++.+.... ...+. .|...+.++.|+|+|+++++++.. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999874321 23333 355668899999999987766542 56899999986 53 355
Q ss_pred EEeeCCceEEE-EEecCCCEEEEEcCC---CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCC
Q 003106 761 VFKVESFCCWC-VNAMNRPCLWDKLDA---GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836 (847)
Q Consensus 761 ~~~~~~~~v~~-~~~~~~~~l~~~~~~---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~D 836 (847)
.+..+...+.. +..++...++....+ +.|.+|+........+..... +... ..+..+.+. .++.++++...|
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~--~~~~~~~~~-~~~~lv~~~~~~ 356 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEK--DVLEWVACV-RSNFLVLCYLHD 356 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSS--CEEEEEEEE-TTTEEEEEEEET
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-CCCC--CeEEEEEEE-cCCEEEEEEEEC
Confidence 55554443333 333333333333322 357777754321100000000 1110 011122222 246788888889
Q ss_pred CeEEEEE
Q 003106 837 SSLSSFI 843 (847)
Q Consensus 837 G~V~vW~ 843 (847)
+..+||.
T Consensus 357 g~~~l~~ 363 (710)
T 2xdw_A 357 VKNTLQL 363 (710)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 8655553
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-09 Score=113.75 Aligned_cols=218 Identities=10% Similarity=0.020 Sum_probs=137.9
Q ss_pred CcceEEEecCCC-eEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGA-GTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~-~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
....++|+++|. .++++. .. ..||..++ . ..+. .. ......+.+..++ +...++.|.+||..++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~---~~--~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g- 100 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM---HP--SHHQNGHCLNKQGHLIACSHGLRRLERQREPGG- 100 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE---SS--CSSEEEEEECTTCCEEEEETTTTEEEEECSTTC-
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE---CC--CCCcceeeECCCCcEEEEecCCCeEEEEcCCCC-
Confidence 345789999998 333332 22 56787765 2 2111 11 0111112233333 2234578999998777
Q ss_pred eeeEeEEe-ec-CCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 627 SFKEANSV-RA-STSKVICCHFSSDGKLLATGGH-----------------DKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 627 ~~~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~-----------------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
.+..+... .+ ....+.+++++++|+++++.+. .+.|..||.+ ++ +..+..+...+..++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLA 178 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEE
Confidence 33322211 11 1245778999999999887321 2345555554 44 344556667789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCce---EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|+|+++.|++.+.++.|++||+...+.. ...+..+...+.+|+|+++|. ++++. ++.|.+||.. ++.+..+..
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 9999998877778899999999732443 333434556678899999987 55455 7899999987 778888877
Q ss_pred CCceEEEEEec--CCCEEEEEcCCC
Q 003106 765 ESFCCWCVNAM--NRPCLWDKLDAG 787 (847)
Q Consensus 765 ~~~~v~~~~~~--~~~~l~~~~~~g 787 (847)
+.. +.++.+. +...+|....++
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCe
Confidence 666 6666653 445788877654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.6e-08 Score=101.55 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=146.0
Q ss_pred CcceEEEecCCCeEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|...++.. .. .+||.. +.+... . ..........+.+..++ +...++.+..||.. + .
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~ 88 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-P---LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G-I 88 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-E---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-c---CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C-c
Confidence 456788899998776654 23 557766 433211 1 00001111112222222 22335678888875 3 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
++.+ .+......+.++++.++++++++...++.|.+||. +++.... +..+...+.+++++++++.+++...++.|.+
T Consensus 89 ~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 89 IKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp EEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 2222 22235567999999999998888877889999998 5554332 2334567899999999987777767889999
Q ss_pred EECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEEc
Q 003106 707 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
||. + +..... +..+...+.+|++++++. ++++...++.|.+||. +++.... +......+.++..+....+|.+.
T Consensus 167 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-S-GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-C-CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 999 4 443332 334456789999999977 6656666789999999 6664332 22234567788877666788776
Q ss_pred -CCCcEEEEcC
Q 003106 785 -DAGDIQISDS 794 (847)
Q Consensus 785 -~~g~i~i~d~ 794 (847)
.++.|..|+.
T Consensus 243 ~~~~~i~~~d~ 253 (299)
T 2z2n_A 243 WGANKIGRLTS 253 (299)
T ss_dssp TTTTEEEEEET
T ss_pred cCCceEEEECC
Confidence 5678888886
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=119.07 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=65.3
Q ss_pred EEEcCCCCEEEEEeC-----------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 686 VRFSPSMPRLATSSF-----------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-----------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
++|+|++++++++.. +++|.+||+.+ .+.+.++..+. +.+|+|+|+|++++ +++. ++|.|||++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECC
Confidence 688999888876643 34899999998 77888888776 99999999999665 5554 999999999
Q ss_pred CC--ceEEEEeeCCceEEEEEe
Q 003106 755 NG--SCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 755 ~~--~~~~~~~~~~~~v~~~~~ 774 (847)
++ +.+..+.......+.+.+
T Consensus 334 t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SSSCEEEEEETTSCSSEEEEEE
T ss_pred CCcceeeEEeccCCCCcEEEEe
Confidence 99 888887544444444443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-10 Score=123.02 Aligned_cols=177 Identities=7% Similarity=-0.012 Sum_probs=113.4
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE-------
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------- 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~------- 685 (847)
+..+.+||+.++. ...+..+... +.++.|+|||++|+.++.++.|++||+.+++....+..+.....+
T Consensus 59 ~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~ 134 (396)
T 3c5m_A 59 NRNYYLLNLETQQ----AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANS 134 (396)
T ss_dssp SCEEEEEETTTTE----EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT
T ss_pred CceEEEEECCCCc----EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEec
Confidence 3467888888762 2223333333 334889999999999999999999999988876666555544333
Q ss_pred ------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEec-CCCeEEEEEeCC--
Q 003106 686 ------------VRFSPSMPRLATS-----SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGD-- 745 (847)
Q Consensus 686 ------------v~fsp~~~~Lasg-----s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~D-- 745 (847)
++|+|+++.++.+ ..+..|++||+.+ +...... .+...+..+.|+| ++..++++....
T Consensus 135 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 135 DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp TSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred cCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-CcEEeec-cCCcccccceECCCCCCEEEEEecCCCC
Confidence 4567888876654 4567899999987 4443333 5667899999999 776555444321
Q ss_pred ---CcEEEEECCCCceEEEEeeC-CceEEEEEecCC-C-EEEEEcCC----CcEEEEcCCc
Q 003106 746 ---GEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNR-P-CLWDKLDA----GDIQISDSLF 796 (847)
Q Consensus 746 ---g~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~-~-~l~~~~~~----g~i~i~d~~~ 796 (847)
..|.+||+..++........ ...+..+.+..+ . .++....+ +.|.+|+...
T Consensus 213 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp SCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred CCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 46889998766543333321 234555555533 2 34443322 3388888653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=126.70 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=113.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCce--eEEEc-
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK--------------AVLWHTDTLKS--KTNLE- 677 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~--------------V~vwd~~~~~~--~~~l~- 677 (847)
..|++||+.++..... .+ +...+..++|+|| +.|+.++.|+. |++|++.++.. ...+.
T Consensus 189 ~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~ 263 (741)
T 1yr2_A 189 RTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT 263 (741)
T ss_dssp EEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc
Confidence 3577888887733221 11 1112357899999 99998887654 89999987652 22333
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeC---CCc
Q 003106 678 -EHSSLITDVRFSPSMPRLATSSFDK-----TVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG---DGE 747 (847)
Q Consensus 678 -~h~~~I~~v~fsp~~~~Lasgs~Dg-----~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~---Dg~ 747 (847)
.+...+.++.|+|||++|+..+.++ .|++||+.++. .+...+..+...+.... .++|+.+++.... ++.
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK 342 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE
Confidence 3334689999999999988777543 89999998731 21455555555565554 4888877755543 346
Q ss_pred EEEEECCCC--ceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 748 IRYWSINNG--SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 748 V~iWD~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
|.+||+.++ .....+..+...+..+.+.+...++....++...+|.
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 999999885 3444444444556566666666777777888766664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=107.57 Aligned_cols=218 Identities=9% Similarity=-0.037 Sum_probs=142.2
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEe------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSV------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.+..++.|.+||..++. + ...+ +.......++++. +++++++...++.|.+||..+++.+.++. .....
T Consensus 12 ~g~~~~~l~~~d~~t~~-~--~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p 86 (328)
T 3dsm_A 12 FQYSNATLSYYDPATCE-V--ENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSP 86 (328)
T ss_dssp TTSCCBEEEEEETTTTE-E--ECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSE
T ss_pred CCCCCceEEEEECCCCE-E--hhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCC
Confidence 45568899999999872 2 2221 1223456788884 45566666668999999999999988885 34668
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCC-----CCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCC
Q 003106 684 TDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNG 756 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~-----~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~ 756 (847)
..|+|++++ .|+++. .++.|.+||..+ ......+.... .....|++ ++.+++++.. .++.|.+||++++
T Consensus 87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEETT-EEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred cEEEEeCCC-eEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence 999999888 555555 899999999998 56665554322 14667777 4556776665 4889999999999
Q ss_pred ceEEEEeeCCceEEEEEecCCCEEEEEcCC-----------CcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 757 SCTRVFKVESFCCWCVNAMNRPCLWDKLDA-----------GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 757 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
+.+..+..... ...+.++....+|..... +.|.++|..... +.......... ..+.+...+
T Consensus 163 ~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~----~p~~la~~~- 234 (328)
T 3dsm_A 163 KVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGD----WPSEVQLNG- 234 (328)
T ss_dssp EEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTC----CCEEEEECT-
T ss_pred eEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCC----CceeEEEec-
Confidence 98888765433 344555666677777654 578888865322 11111110011 123333334
Q ss_pred CCcEEEEEeCCCeEEEEEccC
Q 003106 826 RECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~gt 846 (847)
++..|+++.. .|.+||..+
T Consensus 235 d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 235 TRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp TSCEEEEESS--SEEEEETTC
T ss_pred CCCEEEEEcc--EEEEEECCC
Confidence 4566666654 788888754
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-07 Score=98.04 Aligned_cols=225 Identities=11% Similarity=0.015 Sum_probs=141.7
Q ss_pred CcceEEEecCCCeEeecC-CCe--EEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SNQ--LWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~~--iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|...++.. ... .||.. +.. .. +...........+.+..++ +...++.+.+||. ++ .
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~ 130 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-K 130 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC-C
Confidence 456778888888766654 333 45544 222 11 1100001111112222222 2233567888887 44 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.. ..+..+...+.++++.++|+++++...++.|.+||. +++.... +..+...+.+++++++++.+++...++.|.+
T Consensus 131 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 131 IRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 222 122335567999999999988888777889999998 6665433 3334566899999999987666667889999
Q ss_pred EECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceEEEEEecCCCEEEEE
Q 003106 707 WDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 707 WD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~ 783 (847)
||. + +.... .+..+...+.+|+++++|. ++++...++.|.+||. ++. +..+. .+...+.++.. ....+|.+
T Consensus 209 ~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 209 ITT-S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred ECC-C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 999 5 33322 2334557799999999986 6656656789999998 454 33443 33455777777 77788888
Q ss_pred cCCCcEEEEcC
Q 003106 784 LDAGDIQISDS 794 (847)
Q Consensus 784 ~~~g~i~i~d~ 794 (847)
...+.+..++.
T Consensus 283 ~~~~~l~~~~~ 293 (299)
T 2z2n_A 283 MECDKIGKLTL 293 (299)
T ss_dssp ETTTEEEEEEE
T ss_pred ecCCcEEEEEc
Confidence 66666666653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.4e-07 Score=93.48 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=143.2
Q ss_pred CcceEEEecCCCeEeecC-CC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce
Q 003106 555 SKPLMMFGTDGAGTLTSP-SN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~ 627 (847)
....+++.++|+..++.. .. .+||.. +++.. +. ..........+....++ +...++.|.++|.. + .
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g-~ 93 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE---VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G-G 93 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE---CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C-C
Confidence 456788889998766653 23 456665 43321 11 00001111111122222 22335678888877 4 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
+.. ..+......+.++++.++++++++...++.|.+||.+ ++.... +......+.++++.++++.+++...++.|.+
T Consensus 94 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTE-YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEE-ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 221 2223345779999999999988887778899999987 555422 3334567899999999986666666889999
Q ss_pred EECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEEEEc
Q 003106 707 WDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 707 WD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
||. + +.... ....+...+.+|++++++. ++++...++.|.+||. +++.... +......+.++..+....+|.+.
T Consensus 172 ~~~-~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 4 33332 2234456789999999875 6656666778999998 5554332 22334557778777666788776
Q ss_pred C-CCcEEEEcC
Q 003106 785 D-AGDIQISDS 794 (847)
Q Consensus 785 ~-~g~i~i~d~ 794 (847)
. .+.|..++.
T Consensus 248 ~~~~~i~~~~~ 258 (300)
T 2qc5_A 248 WGANQIGRITN 258 (300)
T ss_dssp TTTTEEEEECT
T ss_pred cCCCeEEEECC
Confidence 4 478888886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=122.55 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=120.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc--------
Q 003106 637 STSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-------- 703 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~-------- 703 (847)
|...+.+++|||||++||.++.+ ..|+|||+++++.+... .+...+.+++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999887654 46999999998876532 12222367899999 98988877654
Q ss_pred ------EEEEECCCCCc-eEEEec--cCCCCeEEEEEecCCCeEEEEEeC----CCcEEEEECCCC--ceEEEEeeCCce
Q 003106 704 ------VRVWDADNPGY-SLRTFM--GHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNG--SCTRVFKVESFC 768 (847)
Q Consensus 704 ------V~iWD~~~~~~-~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~----Dg~V~iWD~~~~--~~~~~~~~~~~~ 768 (847)
|++|++.+... ....+. .+...+.++.|+|||+++++++.. +..|++||+.++ ++...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 89999977332 123333 333468899999999977766542 348999999887 424445444332
Q ss_pred -EEEEEecCCCEEEEEcC----CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 769 -CWCVNAMNRPCLWDKLD----AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 769 -v~~~~~~~~~~l~~~~~----~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
...+. .....++..+. .+.|.+|+............. .....+ ..+.+. ++.++++...||..+||.
T Consensus 319 ~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l----~~~~~~--~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 319 QWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNL----ESVGIA--GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp CEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEE----EEEEEE--BTEEEEEEEETTEEEEEE
T ss_pred eEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeE----EEEEEE--CCEEEEEEEECCEEEEEE
Confidence 33333 33344444333 344777775431101111111 111111 111111 467888889999888886
Q ss_pred c
Q 003106 844 A 844 (847)
Q Consensus 844 ~ 844 (847)
+
T Consensus 391 ~ 391 (741)
T 1yr2_A 391 F 391 (741)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-08 Score=102.44 Aligned_cols=218 Identities=9% Similarity=-0.027 Sum_probs=132.3
Q ss_pred CCcEEEEeccCCceeeEeEE--eecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEE-Ecc----CCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANS--VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTN-LEE----HSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~--l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~----h~~~I~~ 685 (847)
++.|.+||..++ .+..+.. ..++...+.+++++++ ++++++. .++.|.+||.+ ++.... ... ....+.+
T Consensus 45 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 121 (314)
T 1pjx_A 45 AGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCND 121 (314)
T ss_dssp CCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCE
T ss_pred CCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcC
Confidence 456777776665 2222111 1124567999999999 6655554 44579999988 665433 221 1245889
Q ss_pred EEEcCCCCEEEEEeCC---------------CcEEEEECCCCCceEEEeccCCCCeEEEEEe----cCCCeEEEEEeCCC
Q 003106 686 VRFSPSMPRLATSSFD---------------KTVRVWDADNPGYSLRTFMGHSASVMSLDFH----PNKDDLICSCDGDG 746 (847)
Q Consensus 686 v~fsp~~~~Lasgs~D---------------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs----p~g~~ll~s~s~Dg 746 (847)
|+++++++++++...+ +.|..||.. +.. ..+..+......++|+ ++++.++++...++
T Consensus 122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~ 198 (314)
T 1pjx_A 122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence 9999999877766554 456666654 333 2333344557889999 99877776777789
Q ss_pred cEEEEECC-CCce-----EEEEeeCC-ceEEEEEecCCCEEEEEc-CCCcEEEEcCCcccceeeecccccCCCCcccccc
Q 003106 747 EIRYWSIN-NGSC-----TRVFKVES-FCCWCVNAMNRPCLWDKL-DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSW 818 (847)
Q Consensus 747 ~V~iWD~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w 818 (847)
.|.+||++ +++. ...+..+. ..+..+.++....+|.+. .++.|.+|+...... ...... .. ....
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~~~-~~----~~~~ 271 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRC-PF----EKPS 271 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEEC-SS----SCEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEEeC-CC----CCce
Confidence 99999987 4542 22222222 456677777777788775 567899998542111 111111 11 1122
Q ss_pred ccccccCCCc-EEEEEeCCCeEEEEEcc
Q 003106 819 KVSCRSCREC-CLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 819 ~~~~~~~~~~-~l~sGs~DG~V~vW~~g 845 (847)
.+.+.+ ++. ++++...++.|.+|++.
T Consensus 272 ~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 272 NLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred eEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 333323 456 55556677889999864
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-08 Score=102.66 Aligned_cols=177 Identities=11% Similarity=0.058 Sum_probs=123.2
Q ss_pred eEEeCCCCchhhccccccccCCCCCceEEeeecCC--CCCCCCcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCC
Q 003106 575 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD--TDPRDAGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGK 651 (847)
Q Consensus 575 ~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~--t~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~ 651 (847)
.+||.++++..-.+..-.. .....++..+++ ....+..|..||. ++ +.+..+..+ ...+.++.+.+||+
T Consensus 18 ~~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G---~~~W~~~~~~~~~~~~~~~~~dG~ 89 (276)
T 3no2_A 18 AIINKDTKEIVWEYPLEKG----WECNSVAATKAGEILFSYSKGAKMITR-DG---RELWNIAAPAGCEMQTARILPDGN 89 (276)
T ss_dssp EEEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEEECBSEEEEECT-TS---CEEEEEECCTTCEEEEEEECTTSC
T ss_pred EEEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEEeCCCCEEEECC-CC---CEEEEEcCCCCccccccEECCCCC
Confidence 5688877776554432100 001111222222 0123567888888 55 355555554 35788999999999
Q ss_pred EEEEEeC-CCcEEEEECCCCceeEEEcc------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC
Q 003106 652 LLATGGH-DKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 724 (847)
Q Consensus 652 ~Lasgs~-Dg~V~vwd~~~~~~~~~l~~------h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~ 724 (847)
+|++.+. ++.|..+|. +++.+..+.. +...+..+++.++|++|++...++.|.+||.. ++.+.++... .
T Consensus 90 ~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~ 165 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLS-G 165 (276)
T ss_dssp EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECS-S
T ss_pred EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECC-C
Confidence 9999887 777888875 6777776642 22245567889999999999999999999986 5667777654 4
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 725 ~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.+.++.+.+++. ++++++.++.|..||..+|+.+..+..
T Consensus 166 ~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 166 TPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 567788888877 555777778999999999999888864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-08 Score=104.49 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=142.8
Q ss_pred cceEEEecCCCeEee-------cC-C--CeEEeCCCCchhhccccccccCCCCCceEEeeecC-C---CCCCCCcEEEEe
Q 003106 556 KPLMMFGTDGAGTLT-------SP-S--NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-D---TDPRDAGGRGMD 621 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~-------~~-~--~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d-~---t~~~d~~v~vwd 621 (847)
...++|+++|...++ +. . ..+||..++++...... ...+.......+.+..+ + .+.....+.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-ccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence 357788999986666 22 2 35677767655321100 00000011112222233 2 111233688888
Q ss_pred ccCCceeeEe-EEee--cCCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEEccCCCCe
Q 003106 622 VSQGFSFKEA-NSVR--ASTSKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 622 ~~~~~~~~~~-~~l~--~h~~~V~~l~fspdg~~Lasgs~D---------------g~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.. + .+..+ .... .....+.+++++++|+++++...+ +.|..||.+ ++... +..+....
T Consensus 99 ~~-g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-G-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFP 174 (314)
T ss_dssp TT-S-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSE
T ss_pred CC-C-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCc
Confidence 87 5 22222 1111 112458899999999988877655 567777765 55433 33344557
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEECCCCCc-----eEEEeccCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 684 TDVRFS----PSMPRLATS-SFDKTVRVWDADNPGY-----SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 684 ~~v~fs----p~~~~Lasg-s~Dg~V~iWD~~~~~~-----~~~~~~~h~-~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
..++|+ ++++.|+.+ ..++.|++||++..+. .+..+.++. ..+..|+++++|. ++++...++.|.+||
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEc
Confidence 899999 999766555 4688999999862132 223333443 6688999999986 665766788999999
Q ss_pred CCCCceEEEEeeCCceEEEEEecCCC-EEEEEc-CCCcEEEEcCC
Q 003106 753 INNGSCTRVFKVESFCCWCVNAMNRP-CLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 753 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~~g~i~i~d~~ 795 (847)
.++++.+..+..+...+.++.+.... .+|.+. .++.|..++..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 99888777777766677777775544 377654 44677777643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.2e-08 Score=113.98 Aligned_cols=189 Identities=12% Similarity=-0.019 Sum_probs=131.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceEEEeccCCCC
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NPGYSLRTFMGHSAS 725 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~--~~~~~~~~~~~h~~~ 725 (847)
+.+.++++...+++|.|||..+++.+.++... ..+.++.|+||+++|++++.|+.|.+||+. + ...+.++.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec-CCC
Confidence 34556777788999999999999999888643 357799999999999999999999999995 5 566666654 334
Q ss_pred eEEEEEe----cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----------ceEEEEEec--CCCEEEEEcCCCc
Q 003106 726 VMSLDFH----PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----------FCCWCVNAM--NRPCLWDKLDAGD 788 (847)
Q Consensus 726 V~sl~fs----p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----------~~v~~~~~~--~~~~l~~~~~~g~ 788 (847)
...++|+ |+|+++++++..++.|.|||..+.+.+..+.... ..+..+... ....++...+.|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 7899999 6999998888888999999999999888776421 123334332 2345566677888
Q ss_pred EEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE-EeCCCeEEEEEccC
Q 003106 789 IQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT-GCGDSSLSSFIAGT 846 (847)
Q Consensus 789 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s-Gs~DG~V~vW~~gt 846 (847)
|.++|............ ..........|+ + ++++|++ ...++.|.++|..+
T Consensus 322 v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~----p-dgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI--SAERFLHDGGLD----G-SHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp EEEEETTCSSEEEEEEE--ECCSSEEEEEEC----T-TSCEEEEEEGGGTEEEEEETTT
T ss_pred EEEEecCCCccceeeee--eccccccCceEC----C-CCCEEEEEeCCCCeEEEEECCC
Confidence 98888653321111111 011111112233 3 4555544 55788999999765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.3e-08 Score=117.14 Aligned_cols=175 Identities=13% Similarity=0.022 Sum_probs=115.7
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCce--eEEE--c
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKK-------------AVLWHTDTLKS--KTNL--E 677 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------------V~vwd~~~~~~--~~~l--~ 677 (847)
..|++||+.++..... .+... ....++|+ |++.|+.++.|.. |++|++.+... +..+ .
T Consensus 155 ~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 155 REIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp EEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred EEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 4677888887732221 22211 13467899 9999999988744 99999987543 2223 3
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC---CcEE
Q 003106 678 E-HSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIR 749 (847)
Q Consensus 678 ~-h~~~I~~v~fsp~~~~Lasgs~----Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D---g~V~ 749 (847)
. |...+.++.|+|||++|+.... +..|++||+.++......+..+...+... |+++++.+++....| +.|.
T Consensus 230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 3 4556889999999998754432 35899999987544566666676666665 677778777776654 6799
Q ss_pred EEECCCCce--EEEEeeCCceEEEEEecCCCEEEEEcCCC--cEEEEcCC
Q 003106 750 YWSINNGSC--TRVFKVESFCCWCVNAMNRPCLWDKLDAG--DIQISDSL 795 (847)
Q Consensus 750 iWD~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~~g--~i~i~d~~ 795 (847)
+||+.++.+ ...+..+...+..+..+....++....++ .|.+|+..
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 999988754 23444443333366666666666666666 46677644
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-07 Score=103.05 Aligned_cols=224 Identities=8% Similarity=-0.041 Sum_probs=139.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEE----ccCCCCeEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNL----EEHSSLITD 685 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l----~~h~~~I~~ 685 (847)
..++.|++||..++ ....+ +.. ..... ++|++++++|+++..++ .|.+||...+.....+ ......+.+
T Consensus 149 ~~~~~I~~id~~~g-~~~~~--~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ 223 (409)
T 3hrp_A 149 RDDPRVRLISVDDN-KVTTV--HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGA 223 (409)
T ss_dssp TTTTEEEEEETTTT-EEEEE--EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCB
T ss_pred cCCCcEEEEECCCC-EEEEe--ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEE
Confidence 35678999999876 22222 222 23333 99999999999998866 7888988765554444 224566889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEE----eccCCCCe-E-EEEEecCCCeEEEEEeCCCcEEEEECCCCceE
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT----FMGHSASV-M-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~----~~~h~~~V-~-sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~ 759 (847)
++|+|++..|+.+..++.|+.||..+ +..... ..++...- . .|+|+|++.+++++...++.|+.||.... +
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~-~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~ 300 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKT-QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--C 300 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTT-CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCC-CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--E
Confidence 99999666676677789999999987 332222 22222222 3 89999976778878778899999998744 3
Q ss_pred EEEeeCC---------------ceEEEEEecCCCEEEEE-c-CCCcEEEEcCCcccceeeecc-cccCCC------Cccc
Q 003106 760 RVFKVES---------------FCCWCVNAMNRPCLWDK-L-DAGDIQISDSLFINANIFCGL-GWYGSD------EIPA 815 (847)
Q Consensus 760 ~~~~~~~---------------~~v~~~~~~~~~~l~~~-~-~~g~i~i~d~~~~~~~~~~~~-~~~~~~------~~~~ 815 (847)
..+.+.. .....++++....+|.. . .++.|+.|+........+... +..+.. ....
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~ 380 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFN 380 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBS
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeC
Confidence 3333322 23566666655545544 4 567788888332221111111 111100 0112
Q ss_pred cccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 816 PSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 816 ~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+.+...+ ++.++++-..++.|+.+.+
T Consensus 381 ~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 381 YPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 344454455 3677888888888888765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-07 Score=101.26 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=113.3
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
.|.++|..++ +.+.++.....+ .++|+|||++|+++. .++.|.+||..+++.+.++...
T Consensus 48 ~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 5778888766 445555544343 999999999999886 3678999999998888776532
Q ss_pred -CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 680 -SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 680 -~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
......++|+|||++|+++.. ++.|.++| .+ ++.+.+ +.. .. ++.+.+++.+.+++.+.||.+.+||. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 123468999999999998874 57899999 87 666666 432 22 25667777777778888999999999 8
Q ss_pred CceEEEEe-----eCCceEE-EEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 756 GSCTRVFK-----VESFCCW-CVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ~~~~~~~~-----~~~~~v~-~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
++.+.... .....+. ... ......+|.....+.+.++|..
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 87664332 1111111 111 1112334444466777777754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=9.6e-08 Score=105.60 Aligned_cols=194 Identities=6% Similarity=-0.051 Sum_probs=129.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 003106 644 CHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWD 708 (847)
Q Consensus 644 l~fspdg~~Lasgs~-----Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD 708 (847)
....||+++|++... ++.|.++|..+++.+.++.....+ . |+++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 344689998888865 679999999999999998765555 4 99999999887775 367899999
Q ss_pred CCCCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 709 ADNPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 709 ~~~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
..+ ...+.++.-. ......+.|+|||++++++... ++.|.|+|+.+++.+.++..... ..+.......+
T Consensus 116 ~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998 6666665321 1246679999999988877653 78999999999999998865432 22333445566
Q ss_pred EEEcCCCcEEEEcCCcccceeeecccccCCCCccccccc-cccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK-VSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+..+.+|.+.+++................ .....++. ..+...++.+++ .+.+|.|++.|+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~--~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFH--PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCS--CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceec--cccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 67888888888775432222111111111 11111111 111123444444 5568899998874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=99.82 Aligned_cols=170 Identities=10% Similarity=0.053 Sum_probs=113.1
Q ss_pred CCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEccCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~D---------g~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
+..|.+||..++ .++.+..... ....+++++++++|+++++...+ ....||.++....+..+..+...
T Consensus 72 ~~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~ 150 (297)
T 3g4e_A 72 GTKFCALNWKEQ-SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDI 150 (297)
T ss_dssp TTEEEEEETTTT-EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESB
T ss_pred CCeEEEEECCCC-cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccc
Confidence 457889998877 4444433321 23458899999999977765322 33456665532222333334455
Q ss_pred eEEEEEcCCCCEEEE-EeCCCcEEEEECC-CCCce-----EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 683 ITDVRFSPSMPRLAT-SSFDKTVRVWDAD-NPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 683 I~~v~fsp~~~~Las-gs~Dg~V~iWD~~-~~~~~-----~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...++|+|+++.|+. .+.++.|.+||++ ..+.. +..+..+...+..++++++|. ++++...++.|.+||..+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC
Confidence 789999999997755 4567899999974 21332 222333446788999999985 666777778899999999
Q ss_pred CceEEEEeeCCceEEEEEec--CCCEEEEEcC
Q 003106 756 GSCTRVFKVESFCCWCVNAM--NRPCLWDKLD 785 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~ 785 (847)
++.+..+..+...+.++++. +...+|..+.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 99999998876677777764 3345554443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-06 Score=92.01 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=138.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~fsp~ 691 (847)
.++.|.+||.. + .+..+ .+..+...+.++++.++++++++...++.|.+||.. ++... .+......+.++++.++
T Consensus 39 ~~~~v~~~~~~-~-~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~ 114 (300)
T 2qc5_A 39 KANKISSLDQS-G-RIKEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN 114 (300)
T ss_dssp TTTEEEEECTT-S-CEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST
T ss_pred CCCeEEEECCC-C-ceEEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC
Confidence 35678888877 4 33322 233445779999999999988887778899999988 55432 22224467899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceE
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v 769 (847)
++++++...++.|..||... ......+......+.++++++++. ++++...++.|.+||. +++... +. .....+
T Consensus 115 g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~ 190 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTADG-TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAP 190 (300)
T ss_dssp TCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCE
T ss_pred CCEEEEccCCCeEEEECCCC-CEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCc
Confidence 98777777788999999872 322223333456789999999987 6656666789999998 555443 32 233456
Q ss_pred EEEEecCCCEEEEEcC-CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKLD-AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..+..+....+|.+.. .+.|.+++... ....+. .. .. ....+.+...+ ++.++++...++.|.+|+.
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~-~~----~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKIGRITTTG-EISEYD-IP-TP----NARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECTTC-CEEEEE-CS-ST----TCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred ceEEECCCCCEEEEccCCCEEEEEcCCC-cEEEEE-CC-CC----CCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 7777776667777664 45688888521 111111 00 01 11223333333 3555555556678888764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=109.66 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=110.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.++.+++++...+|++|+.|+ ++||+++... ....+ .+.. |+.|+| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999984 6669865332 22233 4566 999999 89999998 789999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCc
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGD 788 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~ 788 (847)
+++. ........|...|.++.+.+. . +++++.||.|.+||++++.... ....|.|+++..+. +..+..+|.
T Consensus 113 v~sl-~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~~dg~ 183 (388)
T 1xip_A 113 LEEL-SEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLLKDRS 183 (388)
T ss_dssp SSST-TCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEETTSC
T ss_pred chhh-hccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEEcCCc
Confidence 9983 455566677888988887755 3 5678899999999999887653 23468888888777 677889999
Q ss_pred EEEEcCC
Q 003106 789 IQISDSL 795 (847)
Q Consensus 789 i~i~d~~ 795 (847)
+.+|+..
T Consensus 184 i~~~~~~ 190 (388)
T 1xip_A 184 FQSFAWR 190 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEcCC
Confidence 9999744
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.84 E-value=7.7e-07 Score=94.98 Aligned_cols=175 Identities=11% Similarity=0.034 Sum_probs=116.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc----CCCCeEEEEE
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF 688 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~v~f 688 (847)
..+.|..||..++. .. .+ .....+.+++|+++|+++++ . ++.|.+||.++++....... ....+.++++
T Consensus 33 ~~~~i~~~d~~~~~-~~---~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~ 105 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQ-VQ---RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV 105 (297)
T ss_dssp TTTEEEEEETTTCC-EE---EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE
T ss_pred CCCEEEEEECCCCc-EE---EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE
Confidence 45678889988762 21 22 24567999999999996555 4 56899999988765433322 1235889999
Q ss_pred cCCCCEEEEEeCC---------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCc
Q 003106 689 SPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGS 757 (847)
Q Consensus 689 sp~~~~Lasgs~D---------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~--~~~~ 757 (847)
+++|+++++...+ ....||.+...+.. ..+..+......++|+|+++.++++.+.++.|.+||+ .++.
T Consensus 106 d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 106 DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred CCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence 9999866654322 33456665542333 3333344567899999999988878888899999997 4554
Q ss_pred eE--EEE---eeCCceEEEEEecCCCEEEEEcC-CCcEEEEcCC
Q 003106 758 CT--RVF---KVESFCCWCVNAMNRPCLWDKLD-AGDIQISDSL 795 (847)
Q Consensus 758 ~~--~~~---~~~~~~v~~~~~~~~~~l~~~~~-~g~i~i~d~~ 795 (847)
.. ..+ .........+..+....+|.+.. ++.|..|+..
T Consensus 185 ~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 185 ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 32 222 22234567777777778887764 5668888854
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-06 Score=94.09 Aligned_cols=170 Identities=13% Similarity=0.003 Sum_probs=112.8
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc---C-CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---H-SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h-~~~I~~v~fs 689 (847)
++.|.+||..++ ... .+. ....|.+++|+++|++++++ .+ .|.+||.++++....... . ...+.+++++
T Consensus 70 ~~~i~~~d~~~~-~~~---~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d 142 (326)
T 2ghs_A 70 ERELHELHLASG-RKT---VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMH 142 (326)
T ss_dssp GTEEEEEETTTT-EEE---EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCC-cEE---EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC
Confidence 457888888766 222 222 34679999999999877765 44 499999988776433221 1 2358999999
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CC-ce--
Q 003106 690 PSMPRLATSSF------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NG-SC-- 758 (847)
Q Consensus 690 p~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--~~-~~-- 758 (847)
++|+++++... .+.|..+| + +.. ..+..+......++|+++++.++++.+.++.|.+||+. ++ ..
T Consensus 143 ~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 143 PSGALWIGTMGRKAETGAGSIYHVA--K-GKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEE--T-TEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred CCCCEEEEeCCCcCCCCceEEEEEe--C-CcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 99986665442 24455555 3 433 33333344678999999998777777778899999986 55 32
Q ss_pred ---EEEEeeCCceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 759 ---TRVFKVESFCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 759 ---~~~~~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
+..+.........+..+....+|.+. .++.|.+|+.
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 22222233456677777777888776 3567888875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-06 Score=97.82 Aligned_cols=201 Identities=9% Similarity=-0.004 Sum_probs=127.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~ 716 (847)
.....|+|+++++++++...++.|++||.+++.....+... .... ++|+++++.|++++.++ .|.+||... +...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-Ccee
Confidence 46889999999998888777899999999987776555443 3334 99999999999998766 799999876 3333
Q ss_pred EEe----ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEE----EeeCCceE-E-EEEecC-CCEEE-EEc
Q 003106 717 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKVESFCC-W-CVNAMN-RPCLW-DKL 784 (847)
Q Consensus 717 ~~~----~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~----~~~~~~~v-~-~~~~~~-~~~l~-~~~ 784 (847)
..+ ......+.+++|+|++.++++ +..++.|+.||..++..... ........ . .+.++. ...+| +..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224567889999996566665 67788999999988764332 11111111 2 555554 34444 555
Q ss_pred CCCcEEEEcCCcccceeeecccccCCCC------ccccccccccccCCCcEEEEEe-CCCeEEEEEc
Q 003106 785 DAGDIQISDSLFINANIFCGLGWYGSDE------IPAPSWKVSCRSCRECCLYTGC-GDSSLSSFIA 844 (847)
Q Consensus 785 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~~~~~~~l~sGs-~DG~V~vW~~ 844 (847)
..+.|..|+.......+.......+... .......+.+.+ ++.++++-. .++.|++|+.
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 6677888875432111111110001000 011122333344 466777777 8899999983
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-07 Score=101.17 Aligned_cols=172 Identities=15% Similarity=0.063 Sum_probs=115.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccCC---
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHS--- 680 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~--- 680 (847)
++.|.++|..+. +.+.++..-..+ . ++++|||++|++++ .++.|.+||..+++.+.++....
T Consensus 58 ~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc
Confidence 357888888866 555556544444 4 99999999988775 36789999999999998875321
Q ss_pred ----CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 681 ----SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 681 ----~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.....++|+|||++|+++.. ++.|.|+|+.+ .+.+.++..- + + ..+.|.+.+.+++.+.||++.+.++.
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~vv~tI~v~-g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVP-D-C--YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECC-S-E--EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcEEEEEECC-C-c--ceeecCCCceeEEECCCCCEEEEECC
Confidence 24567999999999988864 68999999998 6777777432 1 1 22335555455577889999999998
Q ss_pred C-CceEEEEee----CCceEE-EEEe-cCCCEEEEEcCCCcEEEEcCC
Q 003106 755 N-GSCTRVFKV----ESFCCW-CVNA-MNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 755 ~-~~~~~~~~~----~~~~v~-~~~~-~~~~~l~~~~~~g~i~i~d~~ 795 (847)
+ ++.+..... ....+. ...+ .....++..+.+|.++++|..
T Consensus 208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 255 (386)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred CCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECC
Confidence 6 554322211 111111 0112 133444446668889998864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-06 Score=94.12 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=107.9
Q ss_pred cEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCCCCeEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~ 687 (847)
.+.+||..++ .++.+..... ....+.+++++++|+++++... .+.|..+| +++.. .+..+......++
T Consensus 110 gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~ 185 (326)
T 2ghs_A 110 GLFLRDTATG-VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC 185 (326)
T ss_dssp EEEEEETTTC-CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred CEEEEECCCC-cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence 4888998777 3333322211 1246899999999997776542 24455555 45443 3333444578999
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECC--CCC-c-----eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 688 FSPSMPRLATS-SFDKTVRVWDAD--NPG-Y-----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 688 fsp~~~~Lasg-s~Dg~V~iWD~~--~~~-~-----~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
|+++++.|+.+ +.++.|.+||++ + + . .+..+......+..++++++|. ++++...++.|.+||. +++.
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCE
T ss_pred EcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCE
Confidence 99999877555 457899999986 4 3 2 2223333445678899999986 5556656788999998 5777
Q ss_pred EEEEeeCCceEEEEEec--CCCEEEEEcCC
Q 003106 759 TRVFKVESFCCWCVNAM--NRPCLWDKLDA 786 (847)
Q Consensus 759 ~~~~~~~~~~v~~~~~~--~~~~l~~~~~~ 786 (847)
+..+..+...+.++.+. +...+|.....
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 77787776677777765 33456655443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-07 Score=103.65 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=118.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC-----
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH----- 679 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h----- 679 (847)
+.|.++|+.+. +.+.++..-..+ .++|+||+++|+++. .++.|.++|..+++.+.++...
T Consensus 99 ~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 78899999876 555666544445 899999999988876 3678999999999998887532
Q ss_pred --CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 680 --SSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 680 --~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
......+.|+|||++|+++.. +++|.+.|+.+ .+.+.++..-. . ....|++...+++.+.||.+.+.|+.+
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 223567899999999998874 57899999998 66677665321 1 344566656666788899999999966
Q ss_pred CceEEE----EeeCCceEE-EEE-ecCCCEEEEEcCCCcEEEEcCC
Q 003106 756 GSCTRV----FKVESFCCW-CVN-AMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 756 ~~~~~~----~~~~~~~v~-~~~-~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
++.... +......+. .+. ......+|.....+.+.+.|..
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 665432 221111111 011 1233556666677788888753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=111.76 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=104.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc-------
Q 003106 636 ASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT------- 703 (847)
Q Consensus 636 ~h~~~V~~l~fspdg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~------- 703 (847)
+|...|..++|||||++||.+. ++.+|+|||+++++.+... .+......++|+ |++.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999988543 3357999999999865431 111113578899 9999988887743
Q ss_pred ------EEEEECCCCCc---eEEEecc-CCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCc-eEEEEeeCCceE
Q 003106 704 ------VRVWDADNPGY---SLRTFMG-HSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGS-CTRVFKVESFCC 769 (847)
Q Consensus 704 ------V~iWD~~~~~~---~~~~~~~-h~~~V~sl~fsp~g~~ll~s~s~D---g~V~iWD~~~~~-~~~~~~~~~~~v 769 (847)
|++|++.+... ++..... |...+.++.|+|||++++++.+.+ ..|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987432 2222333 455688999999999887776533 589999998764 445555444433
Q ss_pred EE-EEecCCCEEEEEcCC---CcEEEEcCC
Q 003106 770 WC-VNAMNRPCLWDKLDA---GDIQISDSL 795 (847)
Q Consensus 770 ~~-~~~~~~~~l~~~~~~---g~i~i~d~~ 795 (847)
.. +...+...++....+ +.|.+++..
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~ 313 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAA 313 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 33 333344344443332 457777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-07 Score=95.45 Aligned_cols=208 Identities=13% Similarity=0.032 Sum_probs=125.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fs 689 (847)
++.+..|+. ++ . ...+..+...+.+++|+++|+++++...++.|.+||.+ ++........ ...+.+++++
T Consensus 66 ~~~i~~~~~-~g-~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d 139 (305)
T 3dr2_A 66 GRRVLGWRE-DG-T---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVA 139 (305)
T ss_dssp TTEEEEEET-TS-C---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEEC
T ss_pred CCEEEEEeC-CC-C---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEEC
Confidence 455677776 33 1 23344566789999999999977766666889999986 5543222111 2346789999
Q ss_pred CCCCEEEE----EeC-------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-----CCc
Q 003106 690 PSMPRLAT----SSF-------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGE 747 (847)
Q Consensus 690 p~~~~Las----gs~-------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-----Dg~ 747 (847)
++|+++++ |.. .+.|..||..+ +...... .......++|+|+++.++++.+. ++.
T Consensus 140 ~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 140 RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence 99987776 332 25677788765 3333222 34567889999999876655443 278
Q ss_pred EEEEECCCCceE--EEEe-eCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 748 IRYWSINNGSCT--RVFK-VESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 748 V~iWD~~~~~~~--~~~~-~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
|.+||+..+... ..+. ........+..+....+|.+..+ .|.+|+.... .+...... .. ..++.+.
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g~---~~~~~~~~--~~----~~~~~f~- 285 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDGQ---LLGHIPTP--GT----ASNCTFD- 285 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTSC---EEEEEECS--SC----CCEEEEC-
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCCC---EEEEEECC--Cc----eeEEEEe-
Confidence 999999865411 1111 11223344566667779988754 4888875322 12111111 11 2223333
Q ss_pred CCCcEEEEEeCCCeEEE
Q 003106 825 CRECCLYTGCGDSSLSS 841 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~v 841 (847)
.++..|++++.++..++
T Consensus 286 ~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWML 302 (305)
T ss_dssp TTSCEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCCeEEEE
Confidence 35667777777765554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.7e-07 Score=97.22 Aligned_cols=224 Identities=8% Similarity=-0.077 Sum_probs=129.5
Q ss_pred CcceEEEecCCCeEeecC-----CCeEEeCCCCchhhcccccc--ccCCCCCceEEeeecCC----CCC-----CCCcEE
Q 003106 555 SKPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLV--EDGSLDDNVESFLSHDD----TDP-----RDAGGR 618 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~~~--~~g~~d~~v~~~~s~d~----t~~-----~d~~v~ 618 (847)
....+++++||+.+++.. ..+||.+.++++. .+.... ..+.+.....+.+..++ .+. .+..|.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 456788999999877742 1378887654432 111100 01111111112222222 111 146788
Q ss_pred EEeccCCceeeEeEEee------cCCCCEEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCceeEEEccCC--------
Q 003106 619 GMDVSQGFSFKEANSVR------ASTSKVICCHFSSDGKLL-ATGG---HDKKAVLWHTDTLKSKTNLEEHS-------- 680 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~------~h~~~V~~l~fspdg~~L-asgs---~Dg~V~vwd~~~~~~~~~l~~h~-------- 680 (847)
+||+.++. .+..+. .+...+.+++|++++..+ ++.. .++.|++||+.+++..+.+.+|.
T Consensus 97 ~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 97 AWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 99998773 222232 233457899999865554 5544 57899999999888776664421
Q ss_pred ---------------------CCeEEEEEcCCCCEEEEEeCCC-cEEEEECCC--CCc-----eE--EEeccCCCCeEEE
Q 003106 681 ---------------------SLITDVRFSPSMPRLATSSFDK-TVRVWDADN--PGY-----SL--RTFMGHSASVMSL 729 (847)
Q Consensus 681 ---------------------~~I~~v~fsp~~~~Lasgs~Dg-~V~iWD~~~--~~~-----~~--~~~~~h~~~V~sl 729 (847)
..+..|+|+|+++.|+.+..++ .|..+|... .+. .. ....++......+
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 2368899999999998887766 444444321 000 00 0112344566779
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCCCEEEEE
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~ 783 (847)
+++++|. ++++...++.|.+||.++++........ ...+.++++.....+|..
T Consensus 254 a~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 254 SIDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence 9999975 7778888899999999667643333322 234555655444444433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-09 Score=116.43 Aligned_cols=183 Identities=12% Similarity=-0.014 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCC-CeE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVM 727 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~-~V~ 727 (847)
++.+|++++.|+.|+.||..+++.+.++.. +.+.+..+..++..+++++.||.|+.||..+ ++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 678999999999999999999999988876 5566666667787888888999999999987 555555433211 010
Q ss_pred -EEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeeccc
Q 003106 728 -SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG 806 (847)
Q Consensus 728 -sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 806 (847)
+..+. .+. ++++++.|+.|+.||.++|+.+..+..+..... .. ....++.+..++.|..||.......-.....
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~--~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSL--SP-STSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCcccc--cc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 223 455777899999999999998877765542111 11 4556777778888888885532211111110
Q ss_pred ccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 807 WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 807 ~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.. ...... ........+++++.||.|++||..+
T Consensus 160 ~~-----~~~~~~--~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 160 DY-----AASLPE--DDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EE-----CCBCCC--CCTTCCCCEEEEETSCEEEEECTTT
T ss_pred cc-----cCcccc--CCccccceEEEECCCCEEEEEECCC
Confidence 00 000000 0000124577889999999998753
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-06 Score=94.40 Aligned_cols=143 Identities=11% Similarity=0.019 Sum_probs=102.7
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003106 646 FSSDGKLLATGGH--DK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDAD 710 (847)
Q Consensus 646 fspdg~~Lasgs~--Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~ 710 (847)
..+++++++++.. +. +|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777777653 22 8899999999998888754444 999999999998886 36789999998
Q ss_pred CCCceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEE-EeeCCceEEEEEecCCCEEE
Q 003106 711 NPGYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRV-FKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 711 ~~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~ 781 (847)
+ ...+.++... ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... + .+.......++
T Consensus 106 t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~-~~~~~~~~~~~ 181 (373)
T 2mad_H 106 T-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-Y-HIHPGAPSTFY 181 (373)
T ss_pred C-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-E-EEEeCCCceEE
Confidence 7 5555554321 1335689999999988866644 58899999 99988877 654322 2 22233444556
Q ss_pred EEcCCCcEEEEcC
Q 003106 782 DKLDAGDIQISDS 794 (847)
Q Consensus 782 ~~~~~g~i~i~d~ 794 (847)
..+.+|.+.+++.
T Consensus 182 ~~~~dg~~~~vd~ 194 (373)
T 2mad_H 182 LLCAQGGLAKTDH 194 (373)
T ss_pred EEcCCCCEEEEEC
Confidence 6777888888876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-07 Score=98.03 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=72.7
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccC------
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEH------ 679 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h------ 679 (847)
.+.++|..++ +.+.++..-..+ .++|+||+++|+++. .+++|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7888998876 566666544555 799999999999886 3689999999999999998643
Q ss_pred -CCCeEEEEEcCCCCEEEEEeC--CCcEEE--EECCC
Q 003106 680 -SSLITDVRFSPSMPRLATSSF--DKTVRV--WDADN 711 (847)
Q Consensus 680 -~~~I~~v~fsp~~~~Lasgs~--Dg~V~i--WD~~~ 711 (847)
......++|+|||++|+++.. +..|.+ +|+.+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 123568999999999998875 467888 99875
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-09 Score=116.84 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=88.4
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCC-eE-EEEEc
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-IT-DVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-I~-~v~fs 689 (847)
+.|+.+..||..++ +.+..+.. +.+.+..+..+++.+++++.|+.|+.||.++++.+..+..+... +. +..+.
T Consensus 16 s~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~ 90 (369)
T 2hz6_A 16 TLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS 90 (369)
T ss_dssp ETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-
T ss_pred cCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe
Confidence 34678999999888 34444444 45556666678888888889999999999998887766543211 11 11111
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
.+..|++++.|+.|+.||.++ ++.+..+..+. .+.++|++. .+++++.|+.|+.||.++|+.+..+.....
T Consensus 91 -~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-- 161 (369)
T 2hz6_A 91 -SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRWNATYFDY-- 161 (369)
T ss_dssp -----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--
T ss_pred -cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEEeEecccc--
Confidence 345778888899999999998 66666665443 234566655 455778899999999999987655543211
Q ss_pred EEEEecC----CCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMN----RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~----~~~l~~~~~~g~i~i~d~~ 795 (847)
....... ...++.+..++.+..||..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred cCccccCCccccceEEEECCCCEEEEEECC
Confidence 1111111 1456666677777777743
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-06 Score=91.67 Aligned_cols=210 Identities=13% Similarity=0.093 Sum_probs=137.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
+..++.+..+|.. +. ....+..+...+.++.+.+++. |+.|+.++.|..||.. ++.+..+......+.++.+.+
T Consensus 113 ~t~~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GT---EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp ECTTSEEEEECTT-SC---EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred EecCCEEEEEcCC-CC---EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC
Confidence 3446778888877 52 2333444555567777777776 5567788999999998 887777766666788888887
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
++..+ .++ +.|..|| .+ +..+..+......+.++.+.++|. ++ .++.++.|..+|. +++.+..+......+.
T Consensus 187 ~g~l~-v~t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 187 DGTIY-FGS--DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTGKRIES 258 (330)
T ss_dssp TCCEE-EES--SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECSSCCCS
T ss_pred CCEEE-EEe--CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCCCCccc
Confidence 77644 444 8899999 55 555666655556788899988865 44 5566788888884 5666666655444344
Q ss_pred EEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 771 CVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 771 ~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
++..+....+|.+..++.+..++.. ......... ....+..... ..+..|+.|+.+|.|++...
T Consensus 259 ~~~~~~~g~l~v~t~~ggl~~~d~~---g~~~~~~~~-~~~~~~~~~~------d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 259 SPVIGNTDTIYFGSYDGHLYAINPD---GTEKWNFET-GSWIIATPVI------DENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp CCEECTTSCEEEECTTCEEEEECTT---SCEEEEEEC-SSCCCSCCEE------CTTCCEEEECTTSCEEEEEC
T ss_pred cceEcCCCeEEEecCCCCEEEECCC---CcEEEEEEc-CCccccceEE------cCCCEEEEEcCCCeEEEEec
Confidence 4445667789999999889888842 111111111 1111111111 13456888999999998764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-05 Score=83.24 Aligned_cols=213 Identities=8% Similarity=-0.049 Sum_probs=126.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe-----EE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI-----TD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I-----~~ 685 (847)
+..++.+..+|..++. .+..+...........+ .+..|+.++.++.|..+|..+++.+..+....... ..
T Consensus 109 ~~~~g~l~a~d~~tG~---~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGT---VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp EETTSEEEEEETTTCC---EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred EcCCCEEEEEECCCCC---EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 3456789999998883 23333322221111222 24578888899999999999999887775432211 12
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCC----------e-EEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS----------V-MSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 686 v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~----------V-~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+. +..++.++.++.|..+|.++ +..+..+...... + ....+. +. .++.++.++.|..+|.+
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLR 257 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCCCEEE--TT-EEEEECTTSCEEEEETT
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECC
Confidence 2222 45788888899999999998 5555544321100 1 111122 23 34467788999999999
Q ss_pred CCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 755 NGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 755 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
+++.+....... ...+.. ....+|.+..++.+..+|....... .... .......... ...+..|++++
T Consensus 258 tG~~~w~~~~~~--~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~~-------~~~~~~l~v~~ 325 (376)
T 3q7m_A 258 SGQIMWKRELGS--VNDFIV-DGNRIYLVDQNDRVMALTIDGGVTL-WTQS-DLLHRLLTSP-------VLYNGNLVVGD 325 (376)
T ss_dssp TCCEEEEECCCC--EEEEEE-ETTEEEEEETTCCEEEEETTTCCEE-EEEC-TTTTSCCCCC-------EEETTEEEEEC
T ss_pred CCcEEeeccCCC--CCCceE-ECCEEEEEcCCCeEEEEECCCCcEE-Eeec-ccCCCcccCC-------EEECCEEEEEe
Confidence 998776655332 233332 3567888888889999886533221 1111 0001111111 11256788999
Q ss_pred CCCeEEEEEccC
Q 003106 835 GDSSLSSFIAGT 846 (847)
Q Consensus 835 ~DG~V~vW~~gt 846 (847)
.+|.|.+|+..+
T Consensus 326 ~~g~l~~~d~~t 337 (376)
T 3q7m_A 326 SEGYLHWINVED 337 (376)
T ss_dssp TTSEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 999999998654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-06 Score=93.81 Aligned_cols=142 Identities=9% Similarity=0.038 Sum_probs=104.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q 003106 648 SDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNP 712 (847)
Q Consensus 648 pdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~~~ 712 (847)
+++++++++... +.|.++|..+++.+.++..-..+ .|+|+||+++|+++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 467766666542 69999999999999999865555 899999999888776 367899999998
Q ss_pred CceEEEeccC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 713 GYSLRTFMGH-------SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 713 ~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
.+.+.++.-. ......+.|+|||++++++... ++.|.++|+.+++.+..+..... ..+.......++..+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC 236 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc
Confidence 6666665321 2345679999999988866643 68999999999999988876442 222233334555666
Q ss_pred CCCcEEEEcC
Q 003106 785 DAGDIQISDS 794 (847)
Q Consensus 785 ~~g~i~i~d~ 794 (847)
.+|.+.+.+.
T Consensus 237 ~dG~~~~V~~ 246 (426)
T 3c75_H 237 RDGSLARVDF 246 (426)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEC
Confidence 7777776665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-05 Score=94.96 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=105.1
Q ss_pred EEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCCC-
Q 003106 643 CCHFSSDGKLLATGGHDKK-------------------AVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSMP- 693 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~-------------------V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~~- 693 (847)
.+++.+++.+|+.+..++. |..||.++++.+..+.. |. ..+....+..+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 6788898899999988764 99999999999988764 21 1222223333554
Q ss_pred --EEEEEeCCCcEEEEECCCCCceEEEeccCC-C--------------------------------------CeEEEEEe
Q 003106 694 --RLATSSFDKTVRVWDADNPGYSLRTFMGHS-A--------------------------------------SVMSLDFH 732 (847)
Q Consensus 694 --~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~--------------------------------------~V~sl~fs 732 (847)
.|+.++.+|.|+++|.++ ++.+....... . .-..++|+
T Consensus 319 ~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 788899999999999998 55553221100 0 01136888
Q ss_pred cCCCeEEEEEe--------------------------------------------CCCcEEEEECCCCceEEEEeeCCce
Q 003106 733 PNKDDLICSCD--------------------------------------------GDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 733 p~g~~ll~s~s--------------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
|+...+++... .+|.|+.||+++++.+-.+..+...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 477 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF 477 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence 88774443211 1378999999999988887765533
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCCcc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
...........++.++.++.++.||....
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCC
Confidence 32233345668888999999999997643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-05 Score=94.94 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=105.0
Q ss_pred EEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCC--
Q 003106 643 CCHFSSDGKLLATGGHDK-------------------KAVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSM-- 692 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg-------------------~V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~-- 692 (847)
.+++++++.+|+.+..++ .|..+|.++++.+..+.. |. .....+.+..+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 578889999999887664 599999999999888753 21 122333444467
Q ss_pred -CEEEEEeCCCcEEEEECCCCCceEEEeccCC-----------CCe------------------------EEEEEecCCC
Q 003106 693 -PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------ASV------------------------MSLDFHPNKD 736 (847)
Q Consensus 693 -~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------~~V------------------------~sl~fsp~g~ 736 (847)
+.|+.++.+|.|+++|.++ ++.+..+.... ..+ ..++|+|++.
T Consensus 327 ~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred eeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 6789999999999999998 66655443111 001 1568899877
Q ss_pred eEEEEEe------------------------------------------CCCcEEEEECCCCceEEEEeeCCceEEEEEe
Q 003106 737 DLICSCD------------------------------------------GDGEIRYWSINNGSCTRVFKVESFCCWCVNA 774 (847)
Q Consensus 737 ~ll~s~s------------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~ 774 (847)
.+++... ..|.|..||+++++.+-.+............
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~ 485 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT 485 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence 5554322 1278999999999988777654322222222
Q ss_pred cCCCEEEEEcCCCcEEEEcCCcc
Q 003106 775 MNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
.....++.+..++.+++||....
T Consensus 486 ~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 486 TAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC
T ss_pred eCCCEEEEECCCCcEEEEECCCC
Confidence 34556777889999999997643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-06 Score=90.38 Aligned_cols=176 Identities=12% Similarity=0.065 Sum_probs=119.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 650 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
+..|+.++.++.|..||.+ ++.+..+..+...+.++.+.+++. |+.++.++.|.+||.. +..+..+......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEecCCCceeee
Confidence 5577888889999999998 777777766666677788887775 6667788999999988 45555555555667778
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccC
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYG 809 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 809 (847)
.+..++. ++ .++ +.|..|| .+++.+..+......+.++..+....+|.+..++.+..++... ..+. .... .
T Consensus 183 ~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g--~~~~-~~~~-~ 253 (330)
T 3hxj_A 183 SIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG--TEKW-RFKT-G 253 (330)
T ss_dssp EECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS--CEEE-EEEC-S
T ss_pred EEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC--CEeE-EeeC-C
Confidence 8877766 44 344 7899999 7787777766655566677777777899999888888886421 1111 1111 1
Q ss_pred CCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 810 SDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 810 ~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
......... ..+..|++|+.+|.|..++.
T Consensus 254 ~~~~~~~~~------~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 254 KRIESSPVI------GNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp SCCCSCCEE------CTTSCEEEECTTCEEEEECT
T ss_pred CCccccceE------cCCCeEEEecCCCCEEEECC
Confidence 111111111 12456888888888887764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-05 Score=88.79 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=124.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecC---------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCe
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRAS---------TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h---------~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.++.+..+|..++. .+..+... ...+.+.- ..++..|++++.|+.|..+|.++++.+..+.......
T Consensus 61 ~~g~v~a~d~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 136 (376)
T 3q7m_A 61 RAGLVKALNADDGK---EIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL 136 (376)
T ss_dssp TTSEEEEEETTTCC---EEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCCeEEEEEccCCc---eeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE
Confidence 35678888887773 22222221 22333222 2245678888899999999999999887776543322
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----EEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
....+. +..++.++.++.|..+|.++ ++.+..+....... ...... +. .++.++.++.|..+|.++|+.
T Consensus 137 ~~p~~~--~~~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 137 SRPVVS--DGLVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQM 210 (376)
T ss_dssp SCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCE
T ss_pred cCCEEE--CCEEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcE
Confidence 222222 45788888999999999998 66555554322111 122222 23 344677789999999999998
Q ss_pred EEEEeeCCce----------EEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCc
Q 003106 759 TRVFKVESFC----------CWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCREC 828 (847)
Q Consensus 759 ~~~~~~~~~~----------v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 828 (847)
+..+...... +..........+|.+..++.+..+|.......-..... .... ....+.
T Consensus 211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----~~~~-------~~~~~~ 278 (376)
T 3q7m_A 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----SVND-------FIVDGN 278 (376)
T ss_dssp EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----CEEE-------EEEETT
T ss_pred EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----CCCC-------ceEECC
Confidence 7766543210 10111123467888888888888886532221111110 0000 111356
Q ss_pred EEEEEeCCCeEEEEEccC
Q 003106 829 CLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 829 ~l~sGs~DG~V~vW~~gt 846 (847)
.|++++.+|.|..++..+
T Consensus 279 ~l~~~~~~g~l~~~d~~t 296 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG 296 (376)
T ss_dssp EEEEEETTCCEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCC
Confidence 688888888888888643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.8e-06 Score=89.60 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=91.4
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEE-------ccCCCCeEEEEEcCCCCEEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNL-------EEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~~l-------~~h~~~I~~v~fsp~~~~Lasg 698 (847)
++.+..+. ..+..|+++++|+++++.. .++.++||.+++++. ..+ ..|-..+.+|+|+++++++++-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34444443 6799999999999998864 234356666554543 222 1345679999999998755544
Q ss_pred eC-----CCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCceEEEEe
Q 003106 699 SF-----DKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 699 s~-----Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s---~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.. ++.|.+||+.+ +..+.++.. +...+..|++++++..++++.. .++.|.+||+.+++..+.+.
T Consensus 85 ~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 33 57899999987 565555542 2245689999987666776766 67899999999888766653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-05 Score=80.79 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=132.9
Q ss_pred eeeEeEEeecCCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCC-CCeEEEEEcCCCCEEEEEe-C
Q 003106 627 SFKEANSVRASTS--KVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSS-F 700 (847)
Q Consensus 627 ~~~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~-~~I~~v~fsp~~~~Lasgs-~ 700 (847)
+.+.+.++. |.. ....++|++|+.++++.+. ++.|+++|+.+++.+.++.-.. .....+++. ++.|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 334555553 443 3679999998755555443 5799999999999998875322 233455555 55666655 5
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--c---eEEEEEec
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--F---CCWCVNAM 775 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~---~v~~~~~~ 775 (847)
++.|.++|..+ .+.+.++......- ..++++|++++++. .++.|.++|.++.+.+..+.... . .++.+.+.
T Consensus 85 ~~~v~viD~~t-~~v~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 85 KNIGFIYDRRT-LSNIKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp CSEEEEEETTT-TEEEEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCC-CcEEEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 88999999998 67777774221222 33556788888665 58899999999999888877542 1 24455555
Q ss_pred CCCEEEEEc-CCCcEEEEcCCcccceeeeccc-cc-----CCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 776 NRPCLWDKL-DAGDIQISDSLFINANIFCGLG-WY-----GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 776 ~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~-~~-----~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+ ..+|... ..+.|.+.|............+ .. ...........+++.+....++++|...+.|.+-++.
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 3 4677665 4677888886543332222221 10 0011111223344455556788889899998887763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=96.29 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=93.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcC---CCCEEEEEe-----CCCcEEEEECCCCceeEEEccCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSS---DGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fsp---dg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
+..|+.+..+|..+|.. +..+.. +......+..+| ++..++.++ .|+.|+.||.++++.+..+....
T Consensus 127 ~~~dg~l~AlDa~TG~~---~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 203 (689)
T 1yiq_A 127 GVLDGRLEAIDAKTGQR---AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVP 203 (689)
T ss_dssp ECTTSEEEEEETTTCCE---EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EccCCEEEEEECCCCCE---eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccC
Confidence 34578999999998843 322222 111111111112 444444332 37899999999999987764210
Q ss_pred -------------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECC
Q 003106 681 -------------------------------SLITDVRFSPSMPRLATSSFDKT-------------------VRVWDAD 710 (847)
Q Consensus 681 -------------------------------~~I~~v~fsp~~~~Lasgs~Dg~-------------------V~iWD~~ 710 (847)
.....++++++...|+.++.++. |..||.+
T Consensus 204 ~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~ 283 (689)
T 1yiq_A 204 GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD 283 (689)
T ss_dssp CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT
T ss_pred CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc
Confidence 01125788998889999987764 9999999
Q ss_pred CCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 711 NPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 711 ~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+ ++.+-.+.. |. ..+.......+|+ .+++.++.+|.|+++|.++|+.+....
T Consensus 284 T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 284 T-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp T-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred C-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 9 666665543 22 1222223333443 367788999999999999999875443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=86.40 Aligned_cols=154 Identities=9% Similarity=-0.002 Sum_probs=100.8
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003106 634 VRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
+..........+|+++++ +++++..++.|..|+.. ++ +..+..+...+.+++|+++|+++++...++.|.+||.+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--
Confidence 334555677899999998 66777778999999984 44 35565677789999999999866665567889999986
Q ss_pred CceEEEeccC-----CCCeEEEEEecCCCeEEEE----EeC-------------CCcEEEEECCCCceEEEEeeCCceEE
Q 003106 713 GYSLRTFMGH-----SASVMSLDFHPNKDDLICS----CDG-------------DGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 713 ~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s----~s~-------------Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
+. +..+..+ ...+..++++++|. ++++ |.. .+.|..||..+++..... ......
T Consensus 116 g~-~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 116 GQ-AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp SC-EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred CC-EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 23 2222111 23467899999987 5545 221 256888888777654443 222334
Q ss_pred EEEecCC-CEEEEEcCC------CcEEEEcCC
Q 003106 771 CVNAMNR-PCLWDKLDA------GDIQISDSL 795 (847)
Q Consensus 771 ~~~~~~~-~~l~~~~~~------g~i~i~d~~ 795 (847)
.+.+..+ ..+|..... +.|.+|+..
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 4555543 345555444 578777743
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0001 Score=76.91 Aligned_cols=177 Identities=8% Similarity=0.042 Sum_probs=115.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|.++++.... . ...+........++++++++..|+.+ ...+.|.+++++.......+.........++++|+
T Consensus 56 ~~~~I~~~~~~g~~-~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~ 132 (267)
T 1npe_A 56 SEPSIGRASLHGGE-P--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132 (267)
T ss_dssp TTTEEEEEESSSCC-C--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred CCCEEEEEecCCCC-c--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeC
Confidence 45678888886542 1 12222233578899999976655554 45678999998754332223222246789999997
Q ss_pred CCEEEEEeC---CCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc
Q 003106 692 MPRLATSSF---DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 692 ~~~Lasgs~---Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+..|+.+.. .+.|.+++++. . ....+ .........|+|++++.+++++....+.|.++|+........+.. ..
T Consensus 133 ~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~ 209 (267)
T 1npe_A 133 RGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQ 209 (267)
T ss_dssp TTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CC
T ss_pred CCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CC
Confidence 777766654 36888888864 2 22322 223356889999999888887888889999999986544433332 22
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....++.+....+|+....+.|.+++..
T Consensus 210 ~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 210 YPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 3345555655556666667888888754
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.5e-06 Score=84.98 Aligned_cols=189 Identities=8% Similarity=-0.035 Sum_probs=126.3
Q ss_pred cceEEEecCCCeEeecC-----CCeEEeCCCCchhhcccc----ccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCc
Q 003106 556 KPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDR----LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~-----~~~iWD~~~~~~~~~~~~----~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~ 626 (847)
..-+.|++||+...+.+ ..+++|+.+++....+.- +.+...+++. .+|. ..-.++.+.++|..+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-~lyv----~t~~~~~v~viD~~t~- 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-KLYQ----VVWLKNIGFIYDRRTL- 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-EEEE----EETTCSEEEEEETTTT-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-EEEE----EEecCCEEEEEECCCC-
Confidence 35688999875444433 337789999987765431 0000001111 2222 2346788999999866
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC-----CCeEEEEEcCCCCEEEEEeCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-----SLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-----~~I~~v~fsp~~~~Lasgs~D 701 (847)
+.+.++..-... ...+++||++|+++..+++|.++|.++.+.+..+.-.. ..++.+.|. ++..++....+
T Consensus 97 --~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 97 --SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp --EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred --cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 455555422111 23455688888887788999999999999888876321 246788888 66444444458
Q ss_pred CcEEEEECCCCCceEEEeccC-------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 702 KTVRVWDADNPGYSLRTFMGH-------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~~h-------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
+.|.+.|..+ ++.+..+.-. ......|+|+|+++++++++...++|.+.|+...
T Consensus 172 ~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8999999998 7777766421 1356899999999999999998899998887654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00015 Score=75.67 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=117.9
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceE
Q 003106 639 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSL 716 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~ 716 (847)
..+.+++|++++..|+.+ ..++.|.++|++.......+...-....+|++++++..|+.+. .++.|.++|++. ....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEE
Confidence 457899999976665555 4578999999986554444433335689999999876666554 577899999875 2222
Q ss_pred EEeccCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCceEEEEe-eCCceEEEEEecC--CCEEEEEcCCCcEEE
Q 003106 717 RTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK-VESFCCWCVNAMN--RPCLWDKLDAGDIQI 791 (847)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~~~~~~~~-~~~~~v~~~~~~~--~~~l~~~~~~g~i~i 791 (847)
............++++|++.+++++... .+.|.++++.... ...+. ........++++. ...+|+....+.|.+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 2222223567899999987777766544 4688888886433 33332 2233455566553 345566667778888
Q ss_pred EcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 792 SDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 792 ~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
++........+.. .... .+.+.. ..+.++++...++.|.+++..
T Consensus 194 ~~~~g~~~~~~~~----~~~~----P~gi~~--d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 194 LNPAQPGRRKVLE----GLQY----PFAVTS--YGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTEEEEEEEEE----CCCS----EEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred EecCCCceEEEec----CCCC----ceEEEE--eCCEEEEEECCCCeEEEEeCC
Confidence 8865322111111 1111 112221 134455555566888888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.1e-05 Score=83.98 Aligned_cols=145 Identities=13% Similarity=0.151 Sum_probs=105.7
Q ss_pred CCCCCcEEEEeccCC-ceeeEeEEee-------cCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEE
Q 003106 611 DPRDAGGRGMDVSQG-FSFKEANSVR-------ASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~-~~~~~~~~l~-------~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~~l 676 (847)
+..+..|.++|+.+. ...+.+++++ .-...-..+++.||| +++++..+ +.|.++|.++++++.++
T Consensus 102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~ 180 (462)
T 2ece_A 102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW 180 (462)
T ss_dssp BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC
T ss_pred cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE
Confidence 556789999998743 2345555552 111245567888999 77777665 78999999999999998
Q ss_pred ccCC---CCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCCceEEEeccC--CCCeEEEEE-
Q 003106 677 EEHS---SLITDVRFSPSMPRLATSS-------------------FDKTVRVWDADNPGYSLRTFMGH--SASVMSLDF- 731 (847)
Q Consensus 677 ~~h~---~~I~~v~fsp~~~~Lasgs-------------------~Dg~V~iWD~~~~~~~~~~~~~h--~~~V~sl~f- 731 (847)
.... ..-..+.|+|+++.+++.. .+.+|.+||+.+ ++.+.++... ......|.|
T Consensus 181 ~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~ 259 (462)
T 2ece_A 181 EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPL 259 (462)
T ss_dssp CSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEEC
T ss_pred ccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCCCccceeEee
Confidence 6322 2245688999999988885 378999999998 6667666532 134556666
Q ss_pred -ecCCCeEEEEEe-----CCCcEEEEECCCCc
Q 003106 732 -HPNKDDLICSCD-----GDGEIRYWSINNGS 757 (847)
Q Consensus 732 -sp~g~~ll~s~s-----~Dg~V~iWD~~~~~ 757 (847)
+|++++.++++. .+++|.+|....++
T Consensus 260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 260 HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp SSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred ECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 999998888888 88899888776553
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-05 Score=83.93 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=104.9
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeec--C-CCCEEEEEEcCCCCEEEEEe-------------------CCCcEEEEEC
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRA--S-TSKVICCHFSSDGKLLATGG-------------------HDKKAVLWHT 667 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~--h-~~~V~~l~fspdg~~Lasgs-------------------~Dg~V~vwd~ 667 (847)
.+...+.+.++|..+. +.+.++.. . ...-.++-|+|+++.+++.. .+.+|.+||+
T Consensus 159 ~g~~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 159 EGEGPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp TSCSCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CCCCCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4455678889998866 45555542 2 22345688999999999885 3689999999
Q ss_pred CCCceeEEEccC-C-CCeEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCCce--EEE--ecc------------
Q 003106 668 DTLKSKTNLEEH-S-SLITDVRF--SPSMPRLATSS------FDKTVRVWDADNPGYS--LRT--FMG------------ 721 (847)
Q Consensus 668 ~~~~~~~~l~~h-~-~~I~~v~f--sp~~~~Lasgs------~Dg~V~iWD~~~~~~~--~~~--~~~------------ 721 (847)
.+++.+.++... . .....|+| +|+++++++++ .+++|.+|..+. +.. ... +..
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCcccccccccccc
Confidence 998888887643 1 33456666 99999887666 567888776654 221 111 100
Q ss_pred ----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---CceEEEEee
Q 003106 722 ----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKV 764 (847)
Q Consensus 722 ----h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~---~~~~~~~~~ 764 (847)
-...+..|.+++||++|++++-..+.|.+||+.. .+.+..+..
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 0245788999999999998988899999999863 344545544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.5e-05 Score=89.70 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=102.7
Q ss_pred EEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEcc--CC-------CCeEEEEEcCCCC-
Q 003106 643 CCHFSSDGKLLATGGHDKK-------------------AVLWHTDTLKSKTNLEE--HS-------SLITDVRFSPSMP- 693 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~-------------------V~vwd~~~~~~~~~l~~--h~-------~~I~~v~fsp~~~- 693 (847)
.+++.++..+|+.++.++. |..+|.++++.+..+.. |. ..+....+..+++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 4788888889988887763 99999999999888764 22 2233333334565
Q ss_pred --EEEEEeCCCcEEEEECCCCCceEEEeccCC-----------C-C------------------------eEEEEEecCC
Q 003106 694 --RLATSSFDKTVRVWDADNPGYSLRTFMGHS-----------A-S------------------------VMSLDFHPNK 735 (847)
Q Consensus 694 --~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----------~-~------------------------V~sl~fsp~g 735 (847)
.|+.++.+|.|+++|.++ ++.+..+.... . . -..++|+|+.
T Consensus 314 ~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEECCCCEEEEEECCC-CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688899999999999998 56553322111 0 0 0126778876
Q ss_pred CeEEEEE-----------------------------------eCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 736 DDLICSC-----------------------------------DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 736 ~~ll~s~-----------------------------------s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
..+++.. ..+|.|..||+++++.+-.+.................+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV 472 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEE
Confidence 6544321 12488999999999988777654432222222355677
Q ss_pred EEEcCCCcEEEEcCCcc
Q 003106 781 WDKLDAGDIQISDSLFI 797 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~ 797 (847)
+.+..++.++.||....
T Consensus 473 f~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKG 489 (668)
T ss_dssp EEECTTSEEEEEETTTC
T ss_pred EEECCcccchhhhhhcC
Confidence 88899999999997643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.8e-05 Score=79.64 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=106.7
Q ss_pred eEeEEeecCCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCc
Q 003106 629 KEANSVRASTSK--VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKT 703 (847)
Q Consensus 629 ~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~ 703 (847)
+.+.++ .|... ...|.|+ ++.++++++.+| .|+++|+++++.+..+.... .+....+.++++.|+... .++.
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 444555 45443 4688998 777777777776 89999999999998886433 333322333466776665 4889
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--Cce---EEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SFC---CWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~~---v~~~~~~~~~ 778 (847)
+.+||..+ ...+.++.... .-+.++ ++++.++++. .++.|.++|..+.+.+..+... ... +..+.+.+ .
T Consensus 109 v~v~D~~t-~~~~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~-G 182 (262)
T 3nol_A 109 GFVWNIRN-LRQVRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD-G 182 (262)
T ss_dssp EEEEETTT-CCEEEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET-T
T ss_pred EEEEECcc-CcEEEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC-C
Confidence 99999998 77777776422 223344 5677777554 4788999999999988887753 222 23344443 4
Q ss_pred EEEEEc-CCCcEEEEcCCcc
Q 003106 779 CLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 779 ~l~~~~-~~g~i~i~d~~~~ 797 (847)
.+|... ....|.+.|....
T Consensus 183 ~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp EEEEEETTSSEEEEECTTTC
T ss_pred EEEEEEccCCeEEEEECCCC
Confidence 677665 4667888886543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=93.95 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=97.3
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecC-C----CCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAS-T----SKVICCHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h-~----~~V~~l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
..++.+..+|..++. .+..+..+ . ..+.+.-.- .+..|++++. ++.|+.||.++++.+..+....
T Consensus 135 ~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 210 (677)
T 1kb0_A 135 AWDGRLIALDAATGK---EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP 210 (677)
T ss_dssp CTTSEEEEEETTTCC---EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred cCCCEEEEEECCCCC---EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCC
Confidence 457889999999883 33444333 1 112211111 2345555543 7999999999999988775422
Q ss_pred CC--------------------------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEEC
Q 003106 681 SL--------------------------------ITDVRFSPSMPRLATSSFDK-------------------TVRVWDA 709 (847)
Q Consensus 681 ~~--------------------------------I~~v~fsp~~~~Lasgs~Dg-------------------~V~iWD~ 709 (847)
.. ...++|++++..|+.+..++ +|..+|.
T Consensus 211 ~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~ 290 (677)
T 1kb0_A 211 GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP 290 (677)
T ss_dssp CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence 11 13578899999998887664 5999999
Q ss_pred CCCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 710 DNPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 710 ~~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
++ ++.+-.+.. |. .....+....+|+ .+++.++.+|.|+++|.++|+.+..+..
T Consensus 291 ~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 291 DT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp TT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 98 666655532 21 1233334444663 5677899999999999999998877653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00018 Score=77.26 Aligned_cols=197 Identities=7% Similarity=-0.083 Sum_probs=111.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSP-SMPRLATSSF------------ 700 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~I~~v~fsp-~~~~Lasgs~------------ 700 (847)
..+.+|++.++...|+.+...+.|.++|.++++. ..+.. .......|++.+ +|+..++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578999997333455555555688888775543 22211 123478999999 8876665432
Q ss_pred -----CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc--eEEEEeeCCceEEEEE
Q 003106 701 -----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKVESFCCWCVN 773 (847)
Q Consensus 701 -----Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~--~~~~~~~~~~~v~~~~ 773 (847)
++.|..||..+ +.. ..+.........|+|+++++.++++-..++.|.+||+.... ....+..... ...+.
T Consensus 159 ~~~~~~g~v~~~d~~~-~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPST-KET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTT-TEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred cccCCCceEEEEeCCC-CEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 36788899875 332 22222223456799999998777676777899999987531 1222222222 55666
Q ss_pred ecCCCEEEEEcCC-----------CcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 774 AMNRPCLWDKLDA-----------GDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 774 ~~~~~~l~~~~~~-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
.+....+|..... +.|..++... .++..+........ .....+. ..++.++++...++.|.++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~~g~~~-~~~~~~~--~~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---NILEVIPLPPPFAG-EHFEQIQ--EHDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---CEEEEEECCTTTTT-SCCCEEE--EETTEEEEECSSCSEEEEE
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCC---CEEEEEECCCCCcc-ccceEEE--EeCCEEEEeecCCCceEEE
Confidence 6766678876643 4566776432 11211111110000 0011111 1135555565677888888
Q ss_pred Ecc
Q 003106 843 IAG 845 (847)
Q Consensus 843 ~~g 845 (847)
++.
T Consensus 310 ~~~ 312 (322)
T 2fp8_A 310 VYD 312 (322)
T ss_dssp EC-
T ss_pred ecc
Confidence 763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00033 Score=85.28 Aligned_cols=174 Identities=9% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc----cCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR------ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHS 680 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~------~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~----~h~ 680 (847)
+..++.+.+||..++ .++....-. -....|.+++..+++++|..|+.++-|.+||..+++...... ...
T Consensus 373 Gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQ-RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EESSSCEEEECTTTC-CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EECCCCeEEEcCCCC-cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 444567888887765 333222110 124679999998888867778887889999988776543321 234
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
..|.++...+++... .|+. +.|.+||..+ +. ...+.. ....|.++...++|. +.+. +. +-|.+||.
T Consensus 452 ~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig-t~-~Gl~~~~~ 524 (795)
T 4a2l_A 452 ENVYAILPDGEGNLW-LGTL-SALVRFNPEQ-RS-FTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIG-GE-EGLSVFKQ 524 (795)
T ss_dssp SCEEEEEECSSSCEE-EEES-SCEEEEETTT-TE-EEECCBCTTCCBCCCCCEEEEEECTTCC-EEEE-ES-SCEEEEEE
T ss_pred CeeEEEEECCCCCEE-EEec-CceeEEeCCC-Ce-EEEccccccccccCCceEEEEEECCCCC-EEEE-eC-CceEEEeC
Confidence 679999999888644 4444 4588999876 33 333321 235789999998877 4433 33 45888998
Q ss_pred CCCceEEEEe-------eCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 754 NNGSCTRVFK-------VESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 754 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.+++. .+. .....|.++..+....+|.++.. .+..|+..
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 87765 332 12346788888888899998887 56677643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.4e-05 Score=78.59 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=114.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCC-CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEE
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~-~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~ 718 (847)
...|.|+ ++.++++.+.+|.|+++|+++++.+..+ -... .-..+++. ++.|+... .++.+.+||..+ .+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T-l~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP-PQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT-TEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCc-CcEEEE
Confidence 4688887 4667778888899999999999998887 3222 22345554 45555444 588999999998 777777
Q ss_pred eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--c---eEEEEEecCCCEEEEEc-CCCcEEEE
Q 003106 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--F---CCWCVNAMNRPCLWDKL-DAGDIQIS 792 (847)
Q Consensus 719 ~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~---~v~~~~~~~~~~l~~~~-~~g~i~i~ 792 (847)
+..- ..-+.|+ +++++++++- .++.|.++|..+.+.+..+.... . .+..+.+.+. .+|... ....|.+.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~vI 206 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVLEI 206 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEEEE
Confidence 7642 2234455 4567777554 58899999999999888877532 2 2334444443 677665 46678888
Q ss_pred cCCcccceeeeccc-cc---C--CCCccccccccccccCCCcEEEEEe
Q 003106 793 DSLFINANIFCGLG-WY---G--SDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 793 d~~~~~~~~~~~~~-~~---~--~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
|...........+. .. . ..........+++.+....+++||-
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 86543322222221 10 0 1111122233444555567788773
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00019 Score=73.81 Aligned_cols=159 Identities=14% Similarity=0.003 Sum_probs=104.8
Q ss_pred eEeEEeecCCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccCCCC-eEEEEEcCCCCEEEEEe-CCC
Q 003106 629 KEANSVRASTS--KVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSS-FDK 702 (847)
Q Consensus 629 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~~~-I~~v~fsp~~~~Lasgs-~Dg 702 (847)
+.+.++ .|.. -.-.+.|+. +.++.+.+.+| .|+++|+++++.+..+...... -..+++. ++.|+... .++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 444444 4543 355889985 56666666654 8999999999999887643322 2334443 56665554 588
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----ceEEEEEecCC
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----FCCWCVNAMNR 777 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----~~v~~~~~~~~ 777 (847)
.+.+||..+ ...+.++.... .-+.|+ +++..+++|- .++.|.++|..+.+.+..+.... ..+..+.+.+
T Consensus 86 ~v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~- 159 (243)
T 3mbr_X 86 EGFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN- 159 (243)
T ss_dssp EEEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-
T ss_pred EEEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC-
Confidence 999999998 77777776432 234455 5667777665 58899999999999888877532 2233444443
Q ss_pred CEEEEEc-CCCcEEEEcCCcc
Q 003106 778 PCLWDKL-DAGDIQISDSLFI 797 (847)
Q Consensus 778 ~~l~~~~-~~g~i~i~d~~~~ 797 (847)
..+|... ....|.+.|....
T Consensus 160 G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTC
T ss_pred CEEEEEECCCCeEEEEECCCC
Confidence 3566554 5667888886543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00057 Score=83.16 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc--------
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR----ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------- 678 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------- 678 (847)
+..++.+.+|+..+. .++...... -....|.+++...+|. |..|+.++-|.+||..++........
T Consensus 326 gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRN-RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp EESSSCEEEECGGGG-SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CC
T ss_pred EECCCCeEEeCCCcc-cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 334566777776554 232222111 1245699999988876 45577777899999887655433211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~-----~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
....|.++...++++.|..|+.++.|.+||..+ +. +..+. .....|.++...++|. +++ |+. +-|.+||.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~ 478 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNP 478 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEET
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeC
Confidence 235799999988887677888888899999987 43 33332 1345799999988876 443 333 45889999
Q ss_pred CCCceEEEEee------CCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 754 NNGSCTRVFKV------ESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 754 ~~~~~~~~~~~------~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
++++....... ....|.++..+....+|.+.. +.+..++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQ 524 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEE
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeC
Confidence 88765433221 235678888888889999988 55666664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0012 Score=70.78 Aligned_cols=217 Identities=10% Similarity=-0.028 Sum_probs=125.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..|+.+.. ... +-.....+..++|++++..|+.+ ..++.|..++++. ......+...-.....|+++
T Consensus 10 ~~I~~i~~~~~~-~~~---~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 10 HEVRKMTLDRSE-YTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp SSEEEEETTSCC-CEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CeEEEEECCCcc-eEe---hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence 457778877652 211 22234568899999866555544 4568999999875 22222333233456889998
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEE-eeCC
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVF-KVES 766 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~-~~~~ 766 (847)
+.+..|+.+ ..++.|.++|.+. ......+.........|+++|.+.+++++.... +.|..+++... ....+ ...-
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~ 163 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 163 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred ecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCC
Confidence 766666544 5678999999875 333333333445788999999878777665544 78888888643 33333 2233
Q ss_pred ceEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 767 FCCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 767 ~~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
.....++++ ....+|+-...+.|..++........+..... .....+.+... .+.++++-...+.|..++.
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~-----~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-----RLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT-----TTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCC-----ccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 345556555 45566777777888888865333222222100 00011122221 3556666666777777664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00065 Score=75.30 Aligned_cols=215 Identities=10% Similarity=0.042 Sum_probs=129.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+.+++... ... .+......+..++|.+.+..|+ +-...+.|..|+++.......+.........|++++.+.
T Consensus 96 ~~I~~i~~~~~-~~~---~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRS-EYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSC-CCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred ccceeeccCCC-cEE---EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence 45677777654 222 2222345688999998655555 445678899999986655444443334567889998666
Q ss_pred EEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCceEEE
Q 003106 694 RLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 694 ~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+ ...+.|.+.+++. ......+.........|+++|.+..++++-..+ +.|..+++........+...-.....
T Consensus 172 ~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 250 (386)
T ss_dssp EEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred eEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeee
Confidence 66544 4577888888875 333333333446689999999888777666555 78999998755433333333334555
Q ss_pred EEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 772 VNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 772 ~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
++++ ....+|+-...+.|..++........+..... .....++. ..+.++++-...+.|..++
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-------~~P~giav--~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL-------PHPFAITV--FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC-------SSEEEEEE--ETTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC-------CCceEEEE--ECCEEEEeeCCCCeEEEEE
Confidence 5554 55567777777888888854322222222111 01111222 2355666666777777665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00087 Score=81.36 Aligned_cols=176 Identities=10% Similarity=0.018 Sum_probs=113.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---ccCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSV-------RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EEHSS 681 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l---~~h~~ 681 (847)
..++.+..++..+. .++..... .-....|.+++...+|++ ..|+.++-|.+||..++...... .....
T Consensus 330 t~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 330 TWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp EBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred ecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 34566777777654 33322111 112456999999887764 45666667999998754332211 12346
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~ 758 (847)
.|.++...+++. |..|+.++.|.+||..+ +. +..+. .....|.++...+++. ++ .|+. +-|.+||..+++.
T Consensus 408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTTSC-EEEEETTEEEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSC
T ss_pred ceEEEEECCCCC-EEEEeccCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeE
Confidence 799999888775 55577777899999876 33 33332 1346799999888765 44 3444 5688999988765
Q ss_pred EEEEeeC-----CceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 759 TRVFKVE-----SFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 759 ~~~~~~~-----~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....... ...+.++..+....+|.++.++-+..++..
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD 523 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence 5443322 356888888888999999986567777754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0012 Score=73.26 Aligned_cols=177 Identities=8% Similarity=-0.031 Sum_probs=115.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+. .+ ..+.........|++.+.+..| ++-...+.|.+++++.......+...-.....|+++|.
T Consensus 136 ~~~~I~r~~~~g~~-~~--~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 136 TLDRILRANLNGSN-VE--EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp TTTEEEEEETTSCC-EE--EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT
T ss_pred CCCcEEEEecCCCC-cE--EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC
Confidence 45677778876552 11 1222223345678888755544 55555678999888754443334444456799999998
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+.. + +.|..++++. ..........-.....|+|++++.+|+++-...+.|..+|+........+.......
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P 291 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 291 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE
T ss_pred CCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc
Confidence 777766654 3 6788888874 222222233344578999999888888777778899999987554444444333445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
..++.+....+|+....+.|..++
T Consensus 292 ~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 292 FAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCEEEEeeCCCCeEEEEE
Confidence 566666777888888888888887
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0021 Score=71.52 Aligned_cols=217 Identities=11% Similarity=-0.008 Sum_probs=128.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..++... ... .+......+..|+|++.+..|+.+ ...+.|+.++++.. .....+.........|++.
T Consensus 92 ~~I~~i~l~~~-~~~---~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD 167 (400)
T 3p5b_L 92 HEVRKMTLDRS-EYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167 (400)
T ss_dssp TEEEEECTTSC-SCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred ceeEEEccCCc-cee---EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence 45677777654 222 223345678999999866655555 45688999998752 2333343344567899999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+ ...+.|.+.|++. ......+.........|+++|.+.+++++-.. .+.|...++........+...-.
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~ 246 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 246 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS
T ss_pred ecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC
Confidence 865555554 4678899999875 33333333344568999999987777766533 37899999875544444343334
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
....++++ ....+|+-.....|..++........+..... .......++. ..+.++++-...+.|..++
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-----~l~~P~gl~v--~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK-----RLAHPFSLAV--FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS-----TTSSEEEEEE--ETTEEEEEESSSCSEEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC-----CCCCCEEEEE--eCCEEEEecCCCCeEEEEE
Confidence 55556655 45566777777888888754333322222100 0001111111 2345666666667776665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0022 Score=69.92 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=114.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+. .+. .+.........+++.+.+.. +++-...+.|.+++++.......+...-.....|+++|.
T Consensus 93 ~~~~I~r~~~~g~~-~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~ 169 (349)
T 3v64_C 93 TLDRILRANLNGSN-VEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 169 (349)
T ss_dssp TTTEEEEEETTSCS-CEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT
T ss_pred cCCceEEEecCCCC-ceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC
Confidence 45677777776552 111 12222345678899875554 455556788999998854443334344456789999997
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+..|+.+.. + +.|..++++. .....+ ...-.....|+|++++.+++++-...+.|..+|+........+......
T Consensus 170 ~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 247 (349)
T 3v64_C 170 EGTIYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 247 (349)
T ss_dssp TTEEEEEECSSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS
T ss_pred cCeEEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC
Confidence 776665554 4 7788888874 223333 2233457899999988888877777789999998754433344333344
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
...++...+..+|+....+.|..++
T Consensus 248 P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 248 PFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCEEEEecCCCCeEEEEE
Confidence 5556666677778887888888776
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0012 Score=71.91 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=111.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 694 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~ 694 (847)
.|+..++... ... .+......+..++|++.+..|+.+ ...+.|..++++.......+.........|++.+.+..
T Consensus 54 ~I~~i~~~g~-~~~---~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 54 DIRQVLPHRS-EYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp CEEEECTTSC-CEE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred ceEEEeCCCC-eeE---EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence 4666666544 221 222233458899999865555544 46788999999866554444433345678999986666
Q ss_pred EEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 695 LATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 695 Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
|+.+ ...+.|.+.+++. ......+.........|+++|.+..++++-..+ +.|..+++........+...-.....+
T Consensus 130 ly~~d~~~~~I~~~~~dG-~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl 208 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL 208 (349)
T ss_dssp EEEEETTTTEEEEEETTS-CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred EEEEcCCCCeEEEEcCCC-CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence 6544 4578899999875 333333333445688999999877777676666 789999887543332223233345556
Q ss_pred Eec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 773 NAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 773 ~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
+++ ....+|+-...+.|..++...
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 654 455666777777888887543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0061 Score=65.33 Aligned_cols=180 Identities=8% Similarity=0.017 Sum_probs=112.6
Q ss_pred CCCcEEEEeccCCceeeEeE-EeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSFKEAN-SVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~-~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
..+.|..+++.......... .+.........+++.+.+..| ++-..++.|.++|++.......+...-.....|+++|
T Consensus 50 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 50 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEET
T ss_pred CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCC
Confidence 45677777776510001111 122233456789998755544 5556678999999885444333333445678999999
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--C
Q 003106 691 SMPRLATSSFD--KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--E 765 (847)
Q Consensus 691 ~~~~Lasgs~D--g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~ 765 (847)
.+..|+.+... +.|..++++. .....+ ...-.....|+|++++.+++++-...+.|.++|+........+.. .
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG--~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~ 207 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCC--CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCc
Confidence 77777666543 6788888864 333333 223456889999998888887777778999999985433222222 1
Q ss_pred CceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 766 SFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 766 ~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
......++.+....+|+....+.|..++.
T Consensus 208 ~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 208 LAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 23345566666777788878888888874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0023 Score=77.69 Aligned_cols=174 Identities=11% Similarity=0.033 Sum_probs=110.6
Q ss_pred CCcEEEEeccCCceeeEeEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--cCCCCeEEEEEcC
Q 003106 614 DAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSP 690 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~I~~v~fsp 690 (847)
++.+.+||..++ .+..... .......|.++...+++.+.+ |+.++-|.+||..+++...... .....|.++...+
T Consensus 382 ~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 382 GGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp SSCEEEEETTEE-EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred CCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 455777776543 2221110 022346799999887776554 6776779999987765433221 2346799999888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee-
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV- 764 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~- 764 (847)
++. |..|+. +.|.+||..+ +......... ...|.+|...++|. +. .|+.++-|..||.++++... +..
T Consensus 460 ~g~-lwigt~-~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~-~~~~ 533 (781)
T 3v9f_A 460 NKK-IWIGTH-AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLVRK-FNQY 533 (781)
T ss_dssp TSE-EEEEET-TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEEEE-ECTT
T ss_pred CCC-EEEEEC-CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeEEE-ccCC
Confidence 775 555565 5689999886 3322222111 35799999998877 44 34443447789988765433 321
Q ss_pred ---CCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 765 ---ESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 765 ---~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
....|.++..+....+|.++..|.+..++..
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLATGEGLVCFPSAR 567 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEETTEEEEESCTT
T ss_pred CCCCCCeeEEEEECCCCCEEEEECCCceEEECCC
Confidence 2346788888888899999886654777754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=88.66 Aligned_cols=114 Identities=9% Similarity=0.073 Sum_probs=78.5
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-ceeE-EEccCCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 003106 640 KVICCHFS-SDGKLLATGGH-DK----KAVLWHTDTL-KSKT-NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRV 706 (847)
Q Consensus 640 ~V~~l~fs-pdg~~Lasgs~-Dg----~V~vwd~~~~-~~~~-~l~~h~~~I~~v~fsp~~~~Lasgs~D-----g~V~i 706 (847)
.+...+|| |||++||.+.. +| +|+++|++++ +.+. .+. ....+++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 68899999 99998886543 22 5999999988 6321 121 113578899999988776655 25888
Q ss_pred EECCCCCc-eEEEec-cCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCC
Q 003106 707 WDADNPGY-SLRTFM-GHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG 756 (847)
Q Consensus 707 WD~~~~~~-~~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iWD~~~~ 756 (847)
|++.+... ....+. .......++.|+|||++|+++... ...|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 88876321 123332 233456789999999988776643 346888899875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0016 Score=78.86 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=103.2
Q ss_pred CcceEEEe-cCCCeEeec----CC----CeEEeCCCC-chhhc-cccccccCC--CCCceEEeeecCCCCCCCCcEEEEe
Q 003106 555 SKPLMMFG-TDGAGTLTS----PS----NQLWDDKDL-ELRAD-MDRLVEDGS--LDDNVESFLSHDDTDPRDAGGRGMD 621 (847)
Q Consensus 555 ~~~~v~~s-~dG~~~~~~----~~----~~iWD~~~~-~~~~~-~~~~~~~g~--~d~~v~~~~s~d~t~~~d~~v~vwd 621 (847)
......|| |||+.++.. +. ..++|+.++ +...+ +........ -|+....+...+ .......|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d-~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKD-ETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEEC-TTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEEC-CCCCCCEEEEEE
Confidence 45667999 999987643 22 367898887 53221 111111111 122222222211 122224577777
Q ss_pred ccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEE-ccCCCCeEEEEEcCCCC
Q 003106 622 VSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLK-SK--TNL-EEHSSLITDVRFSPSMP 693 (847)
Q Consensus 622 ~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~---Dg~V~vwd~~~~~-~~--~~l-~~h~~~I~~v~fsp~~~ 693 (847)
+.++.. .....+. ........+.|+|||++|+..+. ...|+++|++++. .. ..+ ......+.++.|+..+.
T Consensus 254 lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred CCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 766522 1112222 23345678999999998887653 3468889988652 22 333 33445567777654443
Q ss_pred EEEEEeCC----CcEEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcE--EEEEC
Q 003106 694 RLATSSFD----KTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI--RYWSI 753 (847)
Q Consensus 694 ~Lasgs~D----g~V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V--~iWD~ 753 (847)
+++....+ ..|.++|+.++ ..... +..+...+.--.|...++.++++...|+.. .++|+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 44444443 25677777642 22222 223433333233444566788888888864 45565
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=82.18 Aligned_cols=179 Identities=7% Similarity=-0.040 Sum_probs=122.5
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeec-CCCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRA-STSKVICCHF-S-SDGKLLATGG------------------HDKKAVLWHTDT 669 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~l~f-s-pdg~~Lasgs------------------~Dg~V~vwd~~~ 669 (847)
+..+..|.+.|+.+. ++...+.- ....+..+++ + |++++|++++ .++.|.++|.++
T Consensus 108 d~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t 184 (595)
T 1fwx_A 108 DKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 184 (595)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred cCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence 344667889999876 44443322 2345889998 5 8999999885 245799999999
Q ss_pred CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cEEEEECCC
Q 003106 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--------------------------------------TVRVWDADN 711 (847)
Q Consensus 670 ~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--------------------------------------~V~iWD~~~ 711 (847)
.+.+..+.--. .-..++++|+|+++++++.+. .|.|.|.++
T Consensus 185 ~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 185 WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 99988876433 346788999999998888553 477777775
Q ss_pred --CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------------eEEEEeeCCceEEEEEecCC
Q 003106 712 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------CTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 712 --~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------------~~~~~~~~~~~v~~~~~~~~ 777 (847)
....+..+.. .....++.|+|||+++++++..+.+|.++|+.+.+ .+..+..... .+-+.|+.+
T Consensus 264 ~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~d 341 (595)
T 1fwx_A 264 EASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGR 341 (595)
T ss_dssp GGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTT
T ss_pred cCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCC
Confidence 2221333322 23467799999999999888889999999999653 2333333333 444555544
Q ss_pred CEEE-EEcCCCcEEEEcCC
Q 003106 778 PCLW-DKLDAGDIQISDSL 795 (847)
Q Consensus 778 ~~l~-~~~~~g~i~i~d~~ 795 (847)
..+| +..-++.|.+|+..
T Consensus 342 G~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp SEEEEEETTTTEEEEEEHH
T ss_pred CeEEEEEecCCcEEEEEhh
Confidence 4555 45567778889843
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00094 Score=79.63 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=93.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecC----CCCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAS----TSKVIC-CHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~-l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
..++.+..+|..++. .+..+... ...+.+ ..+ .++ .|++++. +|.|+.||.++++.+..+....
T Consensus 124 ~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 124 TLDGRLIALDAKTGK---AIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp CTTSEEEEEETTTCC---EEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred cCCCEEEEEECCCCC---EeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 457889999999884 33332221 011111 011 144 4555432 5899999999999988775210
Q ss_pred -------------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECC
Q 003106 681 -------------------------------SLITDVRFSPSMPRLATSSFDKT-------------------VRVWDAD 710 (847)
Q Consensus 681 -------------------------------~~I~~v~fsp~~~~Lasgs~Dg~-------------------V~iWD~~ 710 (847)
.....++++++...++.++.++. |..+|.+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~ 278 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD 278 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC
Confidence 01124788888888988887763 9999999
Q ss_pred CCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 711 NPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 711 ~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+ ++.+-.+.. |. ..+....+..+|+ .+++.++.+|.|+++|.++|+.+..+.
T Consensus 279 t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 279 T-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp T-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred C-CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 8 666655543 22 2233333334554 357788999999999999999885544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0014 Score=76.61 Aligned_cols=151 Identities=12% Similarity=0.059 Sum_probs=97.4
Q ss_pred EEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEccC--C--------CCeEEEEEcCCCC---E
Q 003106 644 CHFSSDGKLLATGGHD----------------KKAVLWHTDTLKSKTNLEEH--S--------SLITDVRFSPSMP---R 694 (847)
Q Consensus 644 l~fspdg~~Lasgs~D----------------g~V~vwd~~~~~~~~~l~~h--~--------~~I~~v~fsp~~~---~ 694 (847)
+++.++...|+.+..+ +.|..+|.++++.+..+... . .++ -+....+|+ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence 5666766677766532 35999999999998877532 1 222 123334674 5
Q ss_pred EEEEeCCCcEEEEECCCCCceEEEeccCC-------------CCe--------------------------EEEEEecCC
Q 003106 695 LATSSFDKTVRVWDADNPGYSLRTFMGHS-------------ASV--------------------------MSLDFHPNK 735 (847)
Q Consensus 695 Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-------------~~V--------------------------~sl~fsp~g 735 (847)
|+.++.+|.|+++|.++ ++.+..+.-.. ..| ..++|+|+.
T Consensus 319 v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67888999999999998 56555443111 011 235788887
Q ss_pred CeEEEEEe------------------------------------CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCE
Q 003106 736 DDLICSCD------------------------------------GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPC 779 (847)
Q Consensus 736 ~~ll~s~s------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~ 779 (847)
..+++.+. .+|.|..||+++++.+-.+.................
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL 477 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence 75554431 357899999999998877765432211111233567
Q ss_pred EEEEcCCCcEEEEcCCc
Q 003106 780 LWDKLDAGDIQISDSLF 796 (847)
Q Consensus 780 l~~~~~~g~i~i~d~~~ 796 (847)
++.+..++.++.+|...
T Consensus 478 v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKD 494 (571)
T ss_dssp EEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCC
Confidence 77788999999999654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0039 Score=75.38 Aligned_cols=177 Identities=10% Similarity=-0.012 Sum_probs=111.7
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fs 689 (847)
..|+..++... . ...+......+..|+|.+.+..| ++-...+.|+.++++.. .....+.........|++.
T Consensus 404 ~~Ir~i~l~~~-~---~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRS-E---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSC-C---CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCC-c---ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 34566666544 1 22233345678899999855555 45455678999998752 2333343344567889999
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+. ..+.|.+.+++. ......+.........|+++|.+.+|+++-..+ +.|.+.++........+...-.
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~ 558 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 558 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred ecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence 8876665554 578899999985 333333333445689999999877777665443 7899999875554444443434
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
....++++ ....+|+-.....|..++...
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 55566655 555677777777788887543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0023 Score=71.92 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=86.1
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCcee--EEEccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-K----KAVLWHTDTLKSK--TNLEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g----~V~vwd~~~~~~~--~~l~~h~~~I~~v~ 687 (847)
+.|+++|+..+ . +..+.........|+|++++++|+.+... + .|.+++.+ +... ..+.. .....+++
T Consensus 159 ~~I~~id~~~~-~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~gia 232 (430)
T 3tc9_A 159 HPTRLIDFEKE-Y---VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAE 232 (430)
T ss_dssp EEEEEEETTTT-E---EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEE
T ss_pred CcEEEEECCCC-E---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEE
Confidence 67778888765 2 22333355678899999999966666542 2 23444433 2222 23322 23457889
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 688 FSP-SMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 688 fsp-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
++| ++.++++-..++.|+.||... +.....+ .+.......|+|+|++++++++-...+.|.++|...
T Consensus 233 vdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 233 THPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 999 565555555788999999986 3321222 122245788999999987777777788999988753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0012 Score=76.25 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=119.6
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceeEEEccC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 003106 649 DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH-SSLITDVRF-S-PSMPRLATSS------------------FDKTVRV 706 (847)
Q Consensus 649 dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~f-s-p~~~~Lasgs------------------~Dg~V~i 706 (847)
||++|+.+.. +..|.+.|+++.++...+.-- ...+..++| + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887766 456999999999988855432 345889998 5 9999998884 3568999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-------------------------------------CcEE
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------------------------------GEIR 749 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-------------------------------------g~V~ 749 (847)
+|..+ .+.+..+.--. ....++++|+|+++++++..+ +.|.
T Consensus 180 ID~~t-~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADK-WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTT-TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCC-CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99998 56565554222 456688999999888776443 1366
Q ss_pred EEECCC--Cce-EEEEeeCCceE-EEEEecCCCEEEEEcCCCcEEEEcCCcccc----eeeecccccCCCCccccccccc
Q 003106 750 YWSINN--GSC-TRVFKVESFCC-WCVNAMNRPCLWDKLDAGDIQISDSLFINA----NIFCGLGWYGSDEIPAPSWKVS 821 (847)
Q Consensus 750 iWD~~~--~~~-~~~~~~~~~~v-~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~w~~~ 821 (847)
|.|.++ ++. +..+....... ..++.++...+.+......+.++|...... .+.........-.+-...|.+.
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 666665 433 34444332221 122223333444555667788888553210 0000000111112233456666
Q ss_pred cccCCCcEEEEEeCCCeEEEEEcc
Q 003106 822 CRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+.+ ++..+++.--|+.|.+|++.
T Consensus 338 F~~-dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 338 FDG-RGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp ECT-TSEEEEEETTTTEEEEEEHH
T ss_pred ECC-CCeEEEEEecCCcEEEEEhh
Confidence 666 45667778899999999974
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00054 Score=71.02 Aligned_cols=141 Identities=11% Similarity=0.156 Sum_probs=96.9
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+++|+.++.... .+.-. ..+....+..+++.|+... .++.+.+||.++++.+.++...... ..+ +++++
T Consensus 65 S~v~~vD~~Tgkv~~---~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~ 137 (262)
T 3nol_A 65 SSIRKVDIESGKTLQ---QIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL--THNDQ 137 (262)
T ss_dssp EEEEEECTTTCCEEE---EEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE--EECSS
T ss_pred ceEEEEECCCCcEEE---EEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE--ecCCC
Confidence 478999999884333 33222 2333333333455666555 4889999999999999998743321 233 35677
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEeccC--C---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMGH--S---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h--~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
.|+.+..+++|.++|..+ ...+.++... . ..++.+.|. +| .+++..-.++.|.+.|.++++++..+...
T Consensus 138 ~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 138 YLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp CEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred EEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 787777788899999998 5666655431 1 345568887 55 57767767889999999999999988753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=5.3e-05 Score=83.44 Aligned_cols=92 Identities=10% Similarity=-0.108 Sum_probs=74.3
Q ss_pred cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceEEEeccC-------C
Q 003106 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH-------S 723 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs----------~Dg~V~iWD~~~~~~~~~~~~~h-------~ 723 (847)
+|.|+|.++++.+.++.....+ .+.|+||+++|+++. .+++|.+||+.+ .+.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccC
Confidence 8889999999999999765555 799999999998886 378899999999 6777777533 1
Q ss_pred CCeEEEEEecCCCeEEEEEeC-CCcEEE--EECCC
Q 003106 724 ASVMSLDFHPNKDDLICSCDG-DGEIRY--WSINN 755 (847)
Q Consensus 724 ~~V~sl~fsp~g~~ll~s~s~-Dg~V~i--WD~~~ 755 (847)
.....+.|+|||++++++... +..|.+ +|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 345679999999988866644 467888 99977
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.81 E-value=0.004 Score=66.93 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=116.5
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++..+.... ..+...-.....+++.+.+ +++++-...+.|.+++++.......+...-.....|+++|.
T Consensus 55 ~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 55 SEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp TTTEEEEEETTSSSCCC--EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred CCCcEEEEEccCCCceE--EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 34667777776542111 1122223456688998744 45555556789999998754433333344456789999998
Q ss_pred CCEEEEEeC--CCcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSF--DKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+..|+.+.. .+.|...+++. .....+ ...-.....|+|++++.+++++-+..+.|..+|+........+......
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 210 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH 210 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC
T ss_pred CCEEEEEecCCCCEEEEEEcCC--CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC
Confidence 777766663 57788888764 222332 2233457899999988888877777889999999754433333333344
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
...++.+.+..+|+....+.|..++..
T Consensus 211 P~glav~~~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 211 PFALTLFEDILYWTDWSTHSILACNKY 237 (318)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ceEEEEeCCEEEEEecCCCeEEEEECC
Confidence 566666777888998888888888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0005 Score=71.30 Aligned_cols=144 Identities=7% Similarity=-0.051 Sum_probs=98.7
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.++.|+++|+.++.....+ +... ..-..+++.. +++.+..-.++.|.+||.++++.+.++..... -+.++ ++
T Consensus 72 G~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~D 144 (268)
T 3nok_A 72 GHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YW 144 (268)
T ss_dssp TTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EE
T ss_pred CCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cC
Confidence 34455899999988554444 3321 1122355432 24444445688999999999999999874322 23444 46
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEecc--CC---CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMG--HS---ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~--h~---~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
++.|+.+..+++|.++|..+ .+.+.++.- +. ..++.+.|. +| .+++..-.++.|.+.|.++++++..+...
T Consensus 145 g~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 145 NGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp TTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred CCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 78888888899999999998 566665542 11 245778887 55 57767667889999999999999888743
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0019 Score=69.22 Aligned_cols=173 Identities=8% Similarity=0.004 Sum_probs=103.3
Q ss_pred cEEEEeccCCceeeEeEEee-c-CCCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCceeEE
Q 003106 616 GGRGMDVSQGFSFKEANSVR-A-STSKVICCHFSS-DGKLLATGGH-----------------DKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~fsp-dg~~Lasgs~-----------------Dg~V~vwd~~~~~~~~~ 675 (847)
.+.++|..++ ..+.+.... + ......++++.+ +|++.++-.. ++.|..||.++++....
T Consensus 102 ~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 102 HLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 3667776544 222222111 1 123578999999 9987776533 36788899877665333
Q ss_pred EccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC-ceEEEeccCCCCeEEEEEecCCCeEEEEEeC---------
Q 003106 676 LEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--------- 744 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasg-s~Dg~V~iWD~~~~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~--------- 744 (847)
.. .-.....|+|+++++.|+.+ ..++.|.+||+.... .....+....+ ...|+++++|. ++++...
T Consensus 181 ~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 181 LK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGR 257 (322)
T ss_dssp EE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSC
T ss_pred cc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCC
Confidence 22 22345689999999977666 456899999987521 11222221223 78899999987 5545443
Q ss_pred -CCcEEEEECCCCceEEEEeeCC----ceEEEEEecCCCEEEEEc-CCCcEEEEcC
Q 003106 745 -DGEIRYWSINNGSCTRVFKVES----FCCWCVNAMNRPCLWDKL-DAGDIQISDS 794 (847)
Q Consensus 745 -Dg~V~iWD~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~-~~g~i~i~d~ 794 (847)
.+.|.++|.. ++.+..+.... ..+.++... ...+|.+. ..+.|.+++.
T Consensus 258 ~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 258 VDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC
T ss_pred CccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEec
Confidence 4668888874 77777776442 234444433 34565554 4455666653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0057 Score=68.02 Aligned_cols=181 Identities=8% Similarity=0.003 Sum_probs=116.4
Q ss_pred CCCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
..+.|..+++...... .....+.........|++... ++++++-...+.|.+.+++.......+...-.....|+++|
T Consensus 132 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 132 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 3456777776542111 112223334456789999984 44555555678899999886554444444445688999999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--C
Q 003106 691 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--S 766 (847)
Q Consensus 691 ~~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~ 766 (847)
.+.+|+.... .+.|...+++. ..........-.....|+|++++.+|+++-...+.|..+|+........+... -
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred ccCeEEEEeCCCCCEEEEEeCCC-CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 8777766653 36788888874 22223333334568899999988888777667789999999765443333321 2
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 767 FCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 767 ~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
.....++.+.+..+|+....+.|..++.
T Consensus 291 ~~P~gl~v~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 291 AHPFSLAVFEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp SSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred CCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence 3345666677778888888888888873
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0073 Score=67.89 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=82.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCce-eEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KK-AVLWHTDTLKS-KTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~-V~vwd~~~~~~-~~~l~~h~~~I~~v~fs 689 (847)
+.|+.+|..++ .+..+........+|+|+++|+++++.... .. +..++...+.. ...+. .-.....++++
T Consensus 162 ~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd 236 (433)
T 4hw6_A 162 DAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVH 236 (433)
T ss_dssp SCEEEEETTTT----EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEEC
T ss_pred CCEEEEECCCC----EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEe
Confidence 77888888766 223333355678999999999944444321 12 33333322211 11222 23445678999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCCceEEEe-c-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 690 P-SMPRLATSSFDKTVRVWDADNPGYSLRTF-M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 690 p-~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+ ++.++++-..++.|+.+|..+ +.....+ . +.......|+|+|++++++++-...+.|+.+|+.
T Consensus 237 ~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 237 PQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9 565555555678899999986 4432222 2 2223345799999998777777778899998875
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0019 Score=69.68 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC----CC---EEEEEe-C--CCcEEEEECCCCCceEEE
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS----MP---RLATSS-F--DKTVRVWDADNPGYSLRT 718 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~----~~---~Lasgs-~--Dg~V~iWD~~~~~~~~~~ 718 (847)
...+++....++-|.|||+ .++.+..+.. +.++.|++.|+ ++ ++++.. . +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456676677889999999 7888888854 56777777763 22 233333 3 578999988522233555
Q ss_pred ecc------CC-CCeEEEEE--ecC-CCeEEEEEeCCCcEEEEECC-------CCceEEEEeeCCceEEEEEecCCCEEE
Q 003106 719 FMG------HS-ASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN-------NGSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 719 ~~~------h~-~~V~sl~f--sp~-g~~ll~s~s~Dg~V~iWD~~-------~~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
+.. .. ..++.+|+ ++. +..+++....+|.+..|++. +.+.++.|......-.|+.-.....||
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 522 12 56777888 664 44456677788999999983 346778888777666777766778899
Q ss_pred EEcCCCcEEEEcCC
Q 003106 782 DKLDAGDIQISDSL 795 (847)
Q Consensus 782 ~~~~~g~i~i~d~~ 795 (847)
.+.++..|..++..
T Consensus 196 v~eEd~GIw~~da~ 209 (355)
T 3amr_A 196 IAEEDEAIWKFSAE 209 (355)
T ss_dssp EEETTTEEEEEECS
T ss_pred EecccceEEEEeCC
Confidence 98888767666633
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0097 Score=69.67 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEccCC----------CCeEEEEEc-CCC---
Q 003106 643 CCHFSSDGKLLATGGHD----------------KKAVLWHTDTLKSKTNLEEHS----------SLITDVRFS-PSM--- 692 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~D----------------g~V~vwd~~~~~~~~~l~~h~----------~~I~~v~fs-p~~--- 692 (847)
.+++.++..+|+.+..+ +.|..+|.++++.+..+.... ..|. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35666777788877665 379999999999988776422 1122 2332 467
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCC-------------CCe--------------------------EEEEEec
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-------------ASV--------------------------MSLDFHP 733 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-------------~~V--------------------------~sl~fsp 733 (847)
+.|+.++.+|.|+++|.++ ++.+....... ..| ..++|+|
T Consensus 324 ~~v~~~~~~G~l~~lD~~t-G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTD-GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEECCCcEEEEEECCC-CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 4677788999999999998 66554443110 001 2356677
Q ss_pred CCCeEEEEE--------------------------------e------CCCcEEEEECCCCceEEEEeeCCceEEEEEec
Q 003106 734 NKDDLICSC--------------------------------D------GDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775 (847)
Q Consensus 734 ~g~~ll~s~--------------------------------s------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~ 775 (847)
+...+++.. + .+|.|..||+++++.+-.+.............
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t 482 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT 482 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence 655433211 1 34789999999999877665432211111123
Q ss_pred CCCEEEEEcCCCcEEEEcCCcc
Q 003106 776 NRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
....++.++.++.++.+|....
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTC
T ss_pred cCCEEEEECCCCeEEEEECCCC
Confidence 4566777889999999997643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0028 Score=65.05 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=95.5
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
...|+++|+.++.. +..+.-.. .+....+..+++.|+.. -.++.+.+||.++++.+.++...... ..|+ +++
T Consensus 42 ~S~v~~vD~~tgkv---~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg 114 (243)
T 3mbr_X 42 RSSVRKVDLETGRI---LQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDD 114 (243)
T ss_dssp SCEEEEEETTTCCE---EEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECS
T ss_pred CceEEEEECCCCCE---EEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCC
Confidence 45789999998833 33332222 22222222334455444 46889999999999999998743322 3444 567
Q ss_pred CEEEEEeCCCcEEEEECCCCCceEEEeccCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 693 ~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-----~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
..|+.+..+++|.++|..+ ...+.++.-.. ..++.+.|. +| .+++..-.+..|.+.|.++++++..+..
T Consensus 115 ~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 115 SHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp SCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred CEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 7787777789999999998 56666654321 346677776 44 4776665678999999999999998874
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0059 Score=65.64 Aligned_cols=217 Identities=10% Similarity=0.005 Sum_probs=123.8
Q ss_pred CcEEEEeccCCc-eeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcee-EEEccCCCCeEEEEEcCC
Q 003106 615 AGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 615 ~~v~vwd~~~~~-~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~-~~l~~h~~~I~~v~fsp~ 691 (847)
..|+.+|+.... ....+ + .....+.+++|.+.+..| ++-...+.|..++++..... ..+...-.....|++.+.
T Consensus 13 ~~I~~i~l~~~~~~~~~~--~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENATIV--V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCCEEE--E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEEEEE--e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 456677776542 11111 1 112346789999855444 55456788999998865322 223233345678999976
Q ss_pred CCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+ ...+.|.+++++. ......+.........|+++|.+..++++-. ..+.|..+++........+...-...
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 6555544 4678899999875 3322233344566889999998776765553 35788888887443333333333344
Q ss_pred EEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..++++ ....+|+-...+.|..++........+..... .....++. ..+.++++-...+.|..++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~-------~~P~glav--~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-------PHPFALTL--FEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCC-------SCEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCC-------CCceEEEE--eCCEEEEEecCCCeEEEEEC
Confidence 555555 45566777777888888754333222221110 01111111 13456666666677766664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.024 Score=60.94 Aligned_cols=206 Identities=14% Similarity=0.062 Sum_probs=109.4
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
+.+++.+.....+.+.+.+|.+.++++.++++ .++.|.. ..+.++....+ ..+...+.+++|.+++.+++++...+.
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 55666654433344568888888777666655 4665432 22334333322 345567899999999887766654444
Q ss_pred EEEEECCCCCceEEE-eccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----CceEEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----SFCCWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----~~~v~~~~~~~~~ 778 (847)
++-+|-. +..... -......+..+.+.+++. ++ .++.+|.|++++...++.-..+... ...+.++.+....
T Consensus 186 ~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 186 YSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp EEEECTT--CSSCEEEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred EEEeCCC--CCceeECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence 4444431 111111 234456788999999876 44 4455788877753323322222211 2246666666666
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
.+|....++.+......-. ........ .......+.+.+. +...+++++.+|.|..++
T Consensus 262 ~~~~~g~~g~i~~S~DgG~---tW~~~~~~--~~~~~~~~~v~~~--~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 262 EVWLAGGAGALLCSQDGGQ---TWQQDVDV--KKVPSNFYKILFF--SPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEEEEESTTCEEEESSTTS---SCEECGGG--TTSSSCCCEEEEE--ETTEEEEECSTTEEEEEC
T ss_pred EEEEEeCCCeEEEeCCCCc---ccEEcCcc--CCCCCCeEEEEEE--CCCceEEEcCCceEEEEc
Confidence 7777777776644321111 11111100 0001112222222 244577778899887765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.011 Score=71.44 Aligned_cols=180 Identities=8% Similarity=-0.003 Sum_probs=115.0
Q ss_pred CCcEEEEeccCCcee-eEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSF-KEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
.+.|+.+++...... .....+.........|++...++.|+ +-...+.|.+.+++.......+...-.....|+++|.
T Consensus 445 ~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 445 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 524 (791)
T ss_dssp TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecC
Confidence 456777776542110 11222333445677899988775555 4456789999999855443334344456899999998
Q ss_pred CCEEEEEeC-C-CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC--Cc
Q 003106 692 MPRLATSSF-D-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE--SF 767 (847)
Q Consensus 692 ~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~--~~ 767 (847)
+.+|+.+.. + +.|.+.+++. ......+...-.....|++++.+.+|+++-...+.|.++|+........+... -.
T Consensus 525 ~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~ 603 (791)
T 3m0c_C 525 HGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 603 (791)
T ss_dssp TTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred CCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccC
Confidence 777776654 2 6788888874 33333333334578999999888878767666788999999765544444432 22
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
....++......+|+-...+.|...+.
T Consensus 604 ~P~glav~~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 604 HPFSLAVFEDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence 345666667777888888888887764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.012 Score=62.35 Aligned_cols=162 Identities=9% Similarity=-0.027 Sum_probs=94.7
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~i 706 (847)
+.+..+... ....+++|+++++++++-..++.|..||.+. +....+. ....+.+|+|.++++++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 444455432 5678999999999777776889999999875 3333332 335689999999998665554332 4666
Q ss_pred EECCCCCceEEEec-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-EEEEee---------CCceEEEEEec
Q 003106 707 WDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKV---------ESFCCWCVNAM 775 (847)
Q Consensus 707 WD~~~~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-~~~~~~---------~~~~v~~~~~~ 775 (847)
+|..+ +....... ........+++.++ ..++++...++.|.++|..+++. +..... .-.....+..+
T Consensus 100 ~d~~~-g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~d 177 (306)
T 2p4o_A 100 LVKSD-GTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 177 (306)
T ss_dssp EECTT-SCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EcCCC-CeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcC
Confidence 77665 43322221 12233455555544 44565555688999999876532 211110 11123334333
Q ss_pred CCCEEEEEcCCCcEEEEcCC
Q 003106 776 NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~ 795 (847)
....+++....+.|..++..
T Consensus 178 g~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEEeCCCCEEEEEEeC
Confidence 43344455566678777743
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00072 Score=80.46 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=81.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceeEEEccC-----CCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HD-----KKAVLWHTDTLKSKTNLEEH-----SSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D-----g~V~vwd~~~~~~~~~l~~h-----~~~ 682 (847)
+..+.+||..+. .+..+..+...... .++++.+++++++.|+ .+ ..+.+||..+.+-.. +... ...
T Consensus 264 ~~~v~~yd~~t~-~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~ 340 (656)
T 1k3i_A 264 AKKTSLYDSSSD-SWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTA 340 (656)
T ss_dssp TTCEEEEEGGGT-EEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCC
T ss_pred CCceEEecCcCC-ceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccc
Confidence 347999999887 66666544332222 3455667999999998 44 579999998765432 2100 000
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceEEEeccCC---------CCeEEEEEecCCCeEEEEEeC
Q 003106 683 ITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHS---------ASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~D---------g~V~iWD~~~~~~~~~~~~~h~---------~~V~sl~fsp~g~~ll~s~s~ 744 (847)
-....+..++..++.|+.| ..|.+||..+.. .......+. ..-.++.|...+..+++.|+.
T Consensus 341 ~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 0001122344444555444 457889988733 222221111 123456665545567778775
Q ss_pred CC-----------cEEEEECCCCceEEE
Q 003106 745 DG-----------EIRYWSINNGSCTRV 761 (847)
Q Consensus 745 Dg-----------~V~iWD~~~~~~~~~ 761 (847)
++ .|.+||..+......
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 42 688889887765544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0072 Score=70.49 Aligned_cols=149 Identities=17% Similarity=0.084 Sum_probs=90.0
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC--CCEEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEccCCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST--SKVIC-CHFSSDGKLLATGGH------DKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~--~~V~~-l~fspdg~~Lasgs~------Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..++.+..+|..++...-.. .+..+. ..+.+ ..+. ++ .|++++. ++.|+.+|.++++.+.++......
T Consensus 122 ~~dg~l~alD~~tG~~~W~~-~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 198 (571)
T 2ad6_A 122 QANGHLLALDAKTGKINWEV-EVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD 198 (571)
T ss_dssp CTTSEEEEEETTTCCEEEEE-ECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred eCCCEEEEEECCCCCEEEEe-cCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence 34788999999888322211 111110 01211 1111 44 5555554 799999999999998876532110
Q ss_pred -------------------------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEE
Q 003106 683 -------------------------------------I-TDVRFSPSMPRLATSSFD----------------KTVRVWD 708 (847)
Q Consensus 683 -------------------------------------I-~~v~fsp~~~~Lasgs~D----------------g~V~iWD 708 (847)
+ ..+++.++...|+.+..+ +.|..+|
T Consensus 199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald 278 (571)
T 2ad6_A 199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD 278 (571)
T ss_dssp HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE
T ss_pred cccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe
Confidence 0 235677776777766532 3599999
Q ss_pred CCCCCceEEEecc--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 709 ADNPGYSLRTFMG--HS-------ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 709 ~~~~~~~~~~~~~--h~-------~~V~sl~fsp~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
.++ ++.+-.+.. |. ....-+....+|+ .+++.++.+|.|.++|.++|+.+..+..
T Consensus 279 ~~t-G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 279 LDT-GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cCC-CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 998 666655532 21 1111123334664 4666888899999999999998877654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.06 Score=55.66 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=84.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003106 633 SVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~ 710 (847)
.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -......|++.+++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445556799999999776555 46778899999988 888887742 23567899999888766666678899999987
Q ss_pred CCCc--eEEEec------cCCCCeEEEEEecCCCeEEEEEeCCC-cEEEEE
Q 003106 711 NPGY--SLRTFM------GHSASVMSLDFHPNKDDLICSCDGDG-EIRYWS 752 (847)
Q Consensus 711 ~~~~--~~~~~~------~h~~~V~sl~fsp~g~~ll~s~s~Dg-~V~iWD 752 (847)
..+. .+.... ........|+|+|.+.++++++..+. .|..|+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 6443 222221 12345689999999988887766554 455555
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.023 Score=66.30 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=97.2
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeEEEcc--CC--------CCeEEEEE
Q 003106 643 CCHFSSDGKLLATGGH--------------------D----KKAVLWHTDTLKSKTNLEE--HS--------SLITDVRF 688 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~--------------------D----g~V~vwd~~~~~~~~~l~~--h~--------~~I~~v~f 688 (847)
.+++.++..+|+.+.. | +.|..+|+++++.+..+.. |. .+|. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 3566777777777663 2 5899999999999988753 32 1221 222
Q ss_pred c-CCCC---EEEEEeCCCcEEEEECCCCCceEEEeccCC------------CC---------------------------
Q 003106 689 S-PSMP---RLATSSFDKTVRVWDADNPGYSLRTFMGHS------------AS--------------------------- 725 (847)
Q Consensus 689 s-p~~~---~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~------------~~--------------------------- 725 (847)
. .+|+ .|+.++.+|.|+++|.++ ++.+..+.... ..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCC-CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 2 4664 678899999999999998 66554443221 00
Q ss_pred ------eEEEEEecCCCeEEEEEe--------------------------------CCCcEEEEECCCCceEEEEeeCCc
Q 003106 726 ------VMSLDFHPNKDDLICSCD--------------------------------GDGEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 726 ------V~sl~fsp~g~~ll~s~s--------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~ 767 (847)
-..++|+|+...+++... .+|.|..||+++++.+-.+.....
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~ 487 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP 487 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence 013456666554443221 368899999999998776664432
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEcCCcc
Q 003106 768 CCWCVNAMNRPCLWDKLDAGDIQISDSLFI 797 (847)
Q Consensus 768 ~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~ 797 (847)
............++.++.++.++.+|....
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 211111224567778899999999997643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00069 Score=81.16 Aligned_cols=218 Identities=10% Similarity=-0.019 Sum_probs=118.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC----CceeEEEccCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~----~~~~~~l~~h~~~I~~v~fs 689 (847)
..|++.++.+... . .+......+..|+|.+++..|+.+. ..+.|+++++.. ......+...-.....|++.
T Consensus 386 ~~I~~id~~~~~~---~-~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 386 HEVRKMTLDRSEY---T-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TC-CEECTTSCCE---E-CCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred cceEEEeCCCCcc---e-eeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 4667777765421 1 1112234567899998776666654 467899999875 22222222222335678888
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCceEEEEeeCCc
Q 003106 690 PSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFKVESF 767 (847)
Q Consensus 690 p~~~~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~~~~~~~~~~~~~~~ 767 (847)
+.+..|+.+ ...+.|.++|+.. ......+.........|+++|.+.+|+++-... +.|.++++........+...-.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred eeCCcEEEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 655555444 4578899999875 333333332334567899999877666554333 6888888764332222222222
Q ss_pred eEEEEEec--CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 768 CCWCVNAM--NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 768 ~v~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
....++++ ....+|+-...+.|.+++........+...... ... ...+.. ..+.++++....+.|..++.
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-~~~----P~glav--d~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-LAH----PFSLAV--FEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS-CSS----CCCCEE--ETTEEEEECSTTTCEEEEET
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc-CCC----ceEeEE--ECCEEEEEeCCCCeEEEEEc
Confidence 33344444 456777777778888888653332222221100 000 011111 12456666667777877764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0082 Score=70.30 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=90.6
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCC--CCEEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEccCCCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRAST--SKVIC-CHFSSDGKLLATGG------HDKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~--~~V~~-l~fspdg~~Lasgs------~Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
..++.+..+|..+|...-... +..+. ..+.+ ..+. ++ .|++++ .++.|+.+|.++++.+..+......
T Consensus 128 t~dg~l~AlDa~TG~~~W~~~-~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~ 204 (599)
T 1w6s_A 128 QLDGNVAALNAETGETVWKVE-NSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD 204 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEE-CCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred cCCCEEEEEECCCCCEEEeec-CCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCc
Confidence 357788889998883322111 11110 11211 1111 44 455554 3899999999999998776532211
Q ss_pred -------------------------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEE
Q 003106 683 -------------------------------------I-TDVRFSPSMPRLATSSFD----------------KTVRVWD 708 (847)
Q Consensus 683 -------------------------------------I-~~v~fsp~~~~Lasgs~D----------------g~V~iWD 708 (847)
+ ..+++.++...|+.+..+ +.|..+|
T Consensus 205 ~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald 284 (599)
T 1w6s_A 205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD 284 (599)
T ss_dssp HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE
T ss_pred cccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe
Confidence 0 135666777788877765 3799999
Q ss_pred CCCCCceEEEecc--CCC-------CeEEEEEe-cCCC--eEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 709 ADNPGYSLRTFMG--HSA-------SVMSLDFH-PNKD--DLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 709 ~~~~~~~~~~~~~--h~~-------~V~sl~fs-p~g~--~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.++ ++.+-.+.. |.. ...-+... .+|+ .+++.++.+|.|.++|.++|+.+..+.
T Consensus 285 ~~T-G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 285 ADT-GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC-CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 998 666655543 211 11112322 4563 467788899999999999999887665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0011 Score=79.48 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=108.0
Q ss_pred CCCCcEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 612 PRDAGGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
...+.|..+++..... ......+.........|++.+. ++++++-...+.|.+++++.......+.........|+++
T Consensus 425 ~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavD 504 (699)
T 1n7d_A 425 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504 (699)
T ss_dssp TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECC
T ss_pred cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEc
Confidence 3456777887764100 0111111111223456788754 4455554567889999988554433333333456789999
Q ss_pred CCCCEEEEEeC-C-CcEEEEECCCCCceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-
Q 003106 690 PSMPRLATSSF-D-KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE- 765 (847)
Q Consensus 690 p~~~~Lasgs~-D-g~V~iWD~~~~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~- 765 (847)
|.+.+|+.+.. . +.|.++++.. .....+ ...-.....|+|++++.+|+++-...+.|.++|+........+...
T Consensus 505 p~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 582 (699)
T 1n7d_A 505 PVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 582 (699)
T ss_dssp SSSSCCEECCCSSSCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS
T ss_pred cCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC
Confidence 97666665543 2 6788887764 222222 2223456789999988888877777889999999754333333211
Q ss_pred -CceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 766 -SFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 766 -~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
......++++....+|+....+.|..++..
T Consensus 583 ~~~~P~glavd~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 583 RLAHPFSLAVFEDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred cCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence 122334445566778888788888888743
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.056 Score=63.65 Aligned_cols=177 Identities=8% Similarity=-0.027 Sum_probs=115.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|..+++... ..+. .+.........|++...+..| ++-...+.|.+.+++.......+...-....+|+++|.
T Consensus 57 ~~~~I~r~~~~g~-~~~~--v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~ 133 (628)
T 4a0p_A 57 SLKTISRAFMNGS-ALEH--VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA 133 (628)
T ss_dssp TTTEEEEEETTSC-SCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT
T ss_pred CCCeEEEEECCCC-CcEE--EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC
Confidence 4567777777654 1121 122223456788998765555 44455678999998754433333334456789999997
Q ss_pred CCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
...|+.+.. .+.|...+++. ..+..+...-.....|++++++.+|+++-...+.|..+|+..... ..+.......
T Consensus 134 ~G~lY~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P 210 (628)
T 4a0p_A 134 EGFMYWTEWGGKPKIDRAAMDG--SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHP 210 (628)
T ss_dssp TTEEEEEECSSSCEEEEEETTS--CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCE
T ss_pred CCeEEEeCCCCCCEEEEEeCCC--CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCc
Confidence 667766653 46777777764 223333334567889999998888887777788999999976544 3444444445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+.+..+|+-...+.|...+..
T Consensus 211 ~glav~~~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 211 FGLTQYQDYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCEEEEecCCCCEEEEEECC
Confidence 56666677777888778888887743
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.031 Score=57.84 Aligned_cols=154 Identities=7% Similarity=0.042 Sum_probs=101.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEc------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---KTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~~~l~------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~ 709 (847)
...-.|++.+++.++++.-.++.|.++++..... +..+. ........|+|+|.++.|+++.......||.+
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 4577888888888777766778999998875432 22221 12345689999999988877776555555554
Q ss_pred CC--CCceEEEec-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCc---------eEEE
Q 003106 710 DN--PGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESF---------CCWC 771 (847)
Q Consensus 710 ~~--~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~---------~v~~ 771 (847)
+. ....+..+. .+...+.+|+|+|...++++.....+.|.++|.. |+.+..+.-... ..-.
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 31 111222221 1334578999999988888888888999999977 556666554321 3355
Q ss_pred EEecCCCEEEEEcCCCcEEEEc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d 793 (847)
++++....+|..++...+++|.
T Consensus 229 ia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 229 VAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEECTTCCEEEEETTTEEEEEE
T ss_pred eEECCCCCEEEEcCCceEEEEE
Confidence 6666666677777776666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0034 Score=74.55 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=64.1
Q ss_pred cEEEEeccCCceeeEeEEeec-CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCC-CeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRA-STSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~-~I~~v~fsp~~ 692 (847)
.+.+||..++ .++.+..+.. +.....++++..+++++++|+. +..|.+||..+.+-...-..+.. .-.++++.+++
T Consensus 220 ~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg 298 (656)
T 1k3i_A 220 LTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG 298 (656)
T ss_dssp EEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred EEEEEeCCCC-cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC
Confidence 5778998887 5666555533 3334446788889999999984 56899999886644322111111 12345566789
Q ss_pred CEEEEEe-CC-----CcEEEEECCC
Q 003106 693 PRLATSS-FD-----KTVRVWDADN 711 (847)
Q Consensus 693 ~~Lasgs-~D-----g~V~iWD~~~ 711 (847)
+.++.|+ .+ ..+.+||..+
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTT
T ss_pred eEEEEeCcccCCcccccceEeCCCC
Confidence 9888888 44 5699999987
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.067 Score=62.88 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=107.1
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-eEEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~-~~~l~~h~~~I~~v~fsp~ 691 (847)
...|++.|+.... .....+......+..|+|++.+..|+.+. ..+.|..++++.... ...+...-.....|++++.
T Consensus 17 ~~~I~~i~~~~~~--~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 17 RRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp SSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred cccEEEEeCCCCc--ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 3456777766431 11222223345678999999776666555 467899999875432 2333333356889999997
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+..|+.+. .++.|.+.|++. ......+...-.....|+++|.+..++++--. .+.|...++............-...
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred CCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence 66665554 578999999985 33222333444567889999987767755422 4577777776443333333333445
Q ss_pred EEEEec--CCCEEEEEcCCCcEEEEcCC
Q 003106 770 WCVNAM--NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 770 ~~~~~~--~~~~l~~~~~~g~i~i~d~~ 795 (847)
..++.+ ....+|+-...+.|..++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 556555 45667777777888888754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.011 Score=69.11 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=91.7
Q ss_pred CcEEEEeccCCceeeEeEEee--cCC--------CCEEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCceeEEEccCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR--AST--------SKVICCHFS-SDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHS 680 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~--~h~--------~~V~~l~fs-pdg~---~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~ 680 (847)
+.+..+|..++. .+..+. .|. ..|. +... .+|+ .|+.++.+|.|+++|.++++.+..+....
T Consensus 291 ~~v~AlD~~TG~---~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 291 SGQVGVDPSSGE---VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp SEEEEECTTTCC---EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred ceEEEEeCCCCC---EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 578888888873 333332 232 2222 2222 4674 78889999999999999999887665331
Q ss_pred C--Ce-------------------------------------------EEEEEcCCCCEEEEEe----------------
Q 003106 681 S--LI-------------------------------------------TDVRFSPSMPRLATSS---------------- 699 (847)
Q Consensus 681 ~--~I-------------------------------------------~~v~fsp~~~~Lasgs---------------- 699 (847)
. .. ..++|+|+..+|++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 0 00 1345666655555432
Q ss_pred -----------------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE
Q 003106 700 -----------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (847)
Q Consensus 700 -----------------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~ 762 (847)
.+|.|..||+.+ ++.+-.+.... .+..-.....+. +++.++.||.|+.||.++|+.+-.+
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCceeccceeecCCCCCCcceEEEEECCC-CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEe
Confidence 268899999998 56554443222 222111122344 4557889999999999999999888
Q ss_pred eeCCc
Q 003106 763 KVESF 767 (847)
Q Consensus 763 ~~~~~ 767 (847)
+....
T Consensus 524 ~~~~g 528 (582)
T 1flg_A 524 QTGSG 528 (582)
T ss_dssp ECSSC
T ss_pred cCCCC
Confidence 86543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.054 Score=60.73 Aligned_cols=152 Identities=10% Similarity=0.035 Sum_probs=90.7
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC----c-EEEEECCC
Q 003106 639 SKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK----T-VRVWDADN 711 (847)
Q Consensus 639 ~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg----~-V~iWD~~~ 711 (847)
....+|+|+++ +..|+.+...+.|+.+|..+++....+ .......+|+|+++++ |+.+...+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34668999984 455666554489999999877665443 4445689999999999 55554322 2 33333332
Q ss_pred CCce-EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE-eeC-CceEEEEEecCCC-EEE-EEcCC
Q 003106 712 PGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVE-SFCCWCVNAMNRP-CLW-DKLDA 786 (847)
Q Consensus 712 ~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~l~-~~~~~ 786 (847)
... ...+. .......++++++..+++++-..++.|+.+|..++.....+ ... ......++++... .+| +....
T Consensus 217 -~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 -GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp -TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred -Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 221 11221 23446678999954556656666789999999888763333 222 1222345555433 244 44556
Q ss_pred CcEEEEcC
Q 003106 787 GDIQISDS 794 (847)
Q Consensus 787 g~i~i~d~ 794 (847)
+.|..++.
T Consensus 295 ~~I~~~~~ 302 (433)
T 4hw6_A 295 HCIYRVDY 302 (433)
T ss_dssp TEEEEEEB
T ss_pred CEEEEEeC
Confidence 67877663
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.094 Score=59.48 Aligned_cols=137 Identities=10% Similarity=0.073 Sum_probs=84.2
Q ss_pred CcEEEEeccCCceeeEeEEe-ecCCCCEEEEEE-------cCCCCEEEEEeCCC-------cEEEEECCC-Ccee-----
Q 003106 615 AGGRGMDVSQGFSFKEANSV-RASTSKVICCHF-------SSDGKLLATGGHDK-------KAVLWHTDT-LKSK----- 673 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~l~f-------spdg~~Lasgs~Dg-------~V~vwd~~~-~~~~----- 673 (847)
+.|++.|+..+ .+..+... .........|+| ++++++|+++...+ .|.+++... +...
T Consensus 162 ~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~ 240 (496)
T 3kya_A 162 KAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI 240 (496)
T ss_dssp EEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE
T ss_pred CeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc
Confidence 45777887776 33322221 112346899999 99999777766554 266666443 2221
Q ss_pred EEEccCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC-------CCCce-----------EEE-e-ccCCCCeEEEEEe
Q 003106 674 TNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDAD-------NPGYS-----------LRT-F-MGHSASVMSLDFH 732 (847)
Q Consensus 674 ~~l~~h~~~I~~v~fsp~~~~La-sgs~Dg~V~iWD~~-------~~~~~-----------~~~-~-~~h~~~V~sl~fs 732 (847)
..+... .....++++|++..|+ +-..++.|..+|+. + +.. +.. + .+.....+.|+|+
T Consensus 241 ~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~ 318 (496)
T 3kya_A 241 QLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH 318 (496)
T ss_dssp EEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC
T ss_pred eeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-ceeecccccccccccceeEecCCCCCceEEEEc
Confidence 222221 2346788999655554 55568889999987 4 222 112 2 1233456899999
Q ss_pred cCCCeEEEEEeCCCcEEEEECC
Q 003106 733 PNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 733 p~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
|+|..++++-...+.|+.+|..
T Consensus 319 p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 319 PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecC
Confidence 9998766666677889996653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.14 Score=60.22 Aligned_cols=179 Identities=12% Similarity=0.002 Sum_probs=112.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
...|+..|+.+.. ......+ ..-..+..|+|++++..|+.+ ..++.|+.++++.......+.........|++.+.+
T Consensus 14 ~~~I~~i~l~~~~-~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 14 RADIRRISLETNN-NNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp TTEEEEEESSCTT-CEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred CCcEEEEECCCCC-cceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 3467777776542 1211112 223468899999966665544 567899999988654444444333457789998876
Q ss_pred CEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 693 PRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 693 ~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
..|+.+. ..+.|.+.+++. ......+...-.....|+++|....++++- +..+.|...++........+. .-....
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~ 169 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRAN 169 (628)
T ss_dssp TEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEE
T ss_pred CEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcc
Confidence 6665554 577899999875 332222324445688999999767676554 225678888887554333332 334455
Q ss_pred EEEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 771 CVNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 771 ~~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
.++++ ....+|+-...+.|..++...
T Consensus 170 GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 170 GLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 55554 456677777788888887543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.16 Score=59.71 Aligned_cols=180 Identities=6% Similarity=-0.060 Sum_probs=108.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
..|+..++...........+ ..-..+.+|+|.+.+..|+.+ ...+.|+.++++.......+...-.....|++...+.
T Consensus 326 ~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 326 TDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred cceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 35666666554211111111 123457899999855555544 4578899999885444444443345678899987666
Q ss_pred EEEEE-eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 694 RLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 694 ~Lasg-s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.|+.+ +..+.|.+.+++. ......+...-.....|+++|....++++-.. ...|...++............-.....
T Consensus 405 ~lY~tD~~~~~I~v~~~~G-~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNG-TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNG 483 (619)
T ss_dssp EEEEEETTTTEEEEEETTS-CSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred cEEEEeCCCCcEEEEeCCC-CeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCee
Confidence 56555 4578899999875 33222223344678999999986666655432 367777777644333333333344555
Q ss_pred EEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 772 VNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 772 ~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
++.+ ....+|+-...+.|..++...
T Consensus 484 lalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 484 LALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred eEEcccCCEEEEEECCCCEEEEEecCC
Confidence 5554 456677777778888887543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.045 Score=57.93 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=88.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce
Q 003106 639 SKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~ 715 (847)
..+.+++|.++|+++++..... .|..+|..+++....... .......+++.+++..+++-..++.|.++|.......
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4588999999999766654432 477778777765433321 2233455666555544444446889999998652111
Q ss_pred EEEec---------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-Cce--EEEEeeCCceEEEEEecCCCEEEEE
Q 003106 716 LRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC--TRVFKVESFCCWCVNAMNRPCLWDK 783 (847)
Q Consensus 716 ~~~~~---------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~-~~~--~~~~~~~~~~v~~~~~~~~~~l~~~ 783 (847)
+.... +.-.....| ++++++++++-...+.|.+||+.. ++. ...+... .....++.+....+|..
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEE
Confidence 21111 111235556 788888887888889999999875 321 1222111 12223444444456655
Q ss_pred c-CCCcEEEEcCC
Q 003106 784 L-DAGDIQISDSL 795 (847)
Q Consensus 784 ~-~~g~i~i~d~~ 795 (847)
. ..+.|.+++..
T Consensus 229 ~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 229 THIYNSVVRIAPD 241 (306)
T ss_dssp CBTTCCEEEECTT
T ss_pred eCCCCeEEEECCC
Confidence 4 35678877743
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.018 Score=64.57 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=94.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCC
Q 003106 640 KVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK----TVRVWDADNPG 713 (847)
Q Consensus 640 ~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-Dg----~V~iWD~~~~~ 713 (847)
....|+|+| ++..|+.+...+.|+++|++.+...... ........|+|++++++|+.+.. ++ .|.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 4566666665588999999876654433 34556889999999997766654 22 34444433211
Q ss_pred ceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC-CceEEEEEecCCC--EEEEEcCCCcEE
Q 003106 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE-SFCCWCVNAMNRP--CLWDKLDAGDIQ 790 (847)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~-~~~v~~~~~~~~~--~l~~~~~~g~i~ 790 (847)
.....+. .......++++|++.+++++-..++.|..||...+.....+... ......++++... .+++....+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 12346778999955557767667889999999877653333322 2334556655433 344555666777
Q ss_pred EEcC
Q 003106 791 ISDS 794 (847)
Q Consensus 791 i~d~ 794 (847)
.++.
T Consensus 296 ~~~~ 299 (430)
T 3tc9_A 296 RSDY 299 (430)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7663
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.054 Score=57.92 Aligned_cols=139 Identities=9% Similarity=0.092 Sum_probs=93.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeec----CCC--CEEEEEE---cCCCCEEEEEe-------------CCCcEEEEECC--
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRA----STS--KVICCHF---SSDGKLLATGG-------------HDKKAVLWHTD-- 668 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~----h~~--~V~~l~f---spdg~~Lasgs-------------~Dg~V~vwd~~-- 668 (847)
..++|..||...+ ...++ .+.+ ... .+..|.| .++++++++.. .+..|..||+.
T Consensus 33 ~~g~V~~~~~~~~-~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~ 110 (334)
T 2p9w_A 33 YKGRIEVYNPKTQ-SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLS 110 (334)
T ss_dssp TTTEEEEECTTTC-CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCC
T ss_pred cCCEEEEEcCCCC-eEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcC
Confidence 4567777777654 22233 3322 111 3579999 68877777543 26779999999
Q ss_pred -CCceeEEEc--cC-----------CCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCceEEEec------cCCCCeE
Q 003106 669 -TLKSKTNLE--EH-----------SSLITDVRFSPSMPRLATSSFD-KTVRVWDADNPGYSLRTFM------GHSASVM 727 (847)
Q Consensus 669 -~~~~~~~l~--~h-----------~~~I~~v~fsp~~~~Lasgs~D-g~V~iWD~~~~~~~~~~~~------~h~~~V~ 727 (847)
+++.+.... .. ...+.+|+..++|+..++++.. +.|..+|.+. ..+..+. ......+
T Consensus 111 ~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG--~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 111 ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG--KTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS--CCEEEEEECCCCSSSCCSCS
T ss_pred CCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC--CEEeeeeecCCCcccccCcc
Confidence 777765543 11 1247899999999998988887 8777777664 3333321 1122367
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 728 SLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 728 sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.|+++|+|..|++.-+ +|.|..+|+++.
T Consensus 189 GIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp EEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred eEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 9999999987775555 999999999853
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.35 Score=53.30 Aligned_cols=211 Identities=11% Similarity=0.168 Sum_probs=132.9
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEEe--eecCC-CCCCCCcEEEEeccCCceeeEeEEeecC----CCCEEEE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESF--LSHDD-TDPRDAGGRGMDVSQGFSFKEANSVRAS----TSKVICC 644 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~--~s~d~-t~~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~l 644 (847)
....|+|+++-.....+. +...|..| .+... .-..+..|.-|+++.. ..+++.+..| ...|..-
T Consensus 86 ~~lQiFnle~K~klks~~-------~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHT-------MTDDVTFWKWISLNTVALVTDNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp TEEEEEETTTTEEEEEEE-------CSSCCCEEEEEETTEEEEECSSEEEEEESSSS--CCCEEEEECCGGGTTCEEEEE
T ss_pred CeEEEEchHHhhhhccee-------cCCCceEEEecCCCeEEEEcCCeeEEecccCC--CCchhheecchhcccceEEEE
Confidence 344888887765443211 22334444 33332 3345678899999753 2344444444 3568888
Q ss_pred EEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC---CEEEEEeC---CCcEEEEECCC
Q 003106 645 HFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSF---DKTVRVWDADN 711 (847)
Q Consensus 645 ~fspdg~~Lasgs~-------Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~---~~Lasgs~---Dg~V~iWD~~~ 711 (847)
..++|.++++..|- .|.+-+|.++. +.-..+++|......+.+.-+. ..|+.+.. .++++|-++..
T Consensus 157 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred EECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 88999998875542 46788999884 4446788887766655554322 23444544 27899999965
Q ss_pred C--C------ceEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEe-cCCCE
Q 003106 712 P--G------YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNA-MNRPC 779 (847)
Q Consensus 712 ~--~------~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 779 (847)
. + +.+..+. .-.+-..++..++.-. +++..+.-|.|++||++++.|+..-+.....+...+. ....-
T Consensus 236 ~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G 314 (494)
T 1bpo_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (494)
T ss_dssp CCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred CccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCc
Confidence 3 1 1111111 1244566778887766 5557778899999999999999988877776665544 34456
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
+......|.|....
T Consensus 315 i~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 315 IIGVNRKGQVLSVC 328 (494)
T ss_dssp EEEEETTCEEEEEE
T ss_pred EEEEccCceEEEEE
Confidence 67777777766554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.075 Score=60.32 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=93.9
Q ss_pred CEEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCceeEEEccC---CCCeEEEEE-------cCCCCEEEEEeCCC-----
Q 003106 640 KVICCHFSS-DGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH---SSLITDVRF-------SPSMPRLATSSFDK----- 702 (847)
Q Consensus 640 ~V~~l~fsp-dg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h---~~~I~~v~f-------sp~~~~Lasgs~Dg----- 702 (847)
....|+|+| +...|+.+.. .+.|++.|++++.+...+... ......|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 4555555544 467899998877766554332 234899999 99999777776554
Q ss_pred --cEEEEECCCCCceE-----EEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-------CCce----------
Q 003106 703 --TVRVWDADNPGYSL-----RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-------NGSC---------- 758 (847)
Q Consensus 703 --~V~iWD~~~~~~~~-----~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~-------~~~~---------- 758 (847)
.|.+++....+... ..+.. ......++++|++.+|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26667644311111 22221 12345688999777788788788999999997 5543
Q ss_pred -EEE-EeeC-CceEEEEEecCCCE--EEEEcCCCcEEEEc
Q 003106 759 -TRV-FKVE-SFCCWCVNAMNRPC--LWDKLDAGDIQISD 793 (847)
Q Consensus 759 -~~~-~~~~-~~~v~~~~~~~~~~--l~~~~~~g~i~i~d 793 (847)
... +... ......++++.... +++-.....|+.++
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 112 2222 23345566554432 34445666777755
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.049 Score=58.75 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCcEEEEecc--CCceeeEeEEe----ecCCCCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEE
Q 003106 614 DAGGRGMDVS--QGFSFKEANSV----RASTSKVICCHF--SSD-GK-LLATGGHDKKAVLWHTD-------TLKSKTNL 676 (847)
Q Consensus 614 d~~v~vwd~~--~~~~~~~~~~l----~~h~~~V~~l~f--spd-g~-~Lasgs~Dg~V~vwd~~-------~~~~~~~l 676 (847)
+..+++|++. ++ .++.+..+ ..-...+..+|+ ++. ++ ++++...+|.+..|++. +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5779999764 33 34433221 111155666777 664 44 68888889999999883 34567777
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceEEEec-cC-CCCeEEEEE--ecCCC-eEEEEEeCCCc
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFM-GH-SASVMSLDF--HPNKD-DLICSCDGDGE 747 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~----~~~~~~~~-~h-~~~V~sl~f--sp~g~-~ll~s~s~Dg~ 747 (847)
... +.+..|.+.+...+|+.+-.|..|..+|.+-. ...+..+. ++ ...+..|++ .++++ ++|+++-.+++
T Consensus 177 ~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 643 56888899998889999999877777775521 23444432 22 246888887 45555 67777767889
Q ss_pred EEEEECC-CCceEEEEeeC
Q 003106 748 IRYWSIN-NGSCTRVFKVE 765 (847)
Q Consensus 748 V~iWD~~-~~~~~~~~~~~ 765 (847)
+.|||.+ +.+.+..|...
T Consensus 256 ~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 256 YAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEEEESSTTCCEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEec
Confidence 9999997 67778888643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.058 Score=56.83 Aligned_cols=137 Identities=8% Similarity=0.034 Sum_probs=73.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
...+.+||..+. .+..+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.
T Consensus 23 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 99 (306)
T 3ii7_A 23 PQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA 99 (306)
T ss_dssp TTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE
T ss_pred CceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE
Confidence 456777888776 56655444332222233332 67778888765 5788999887654322 211111222233
Q ss_pred EcCCCCEEEEEeCC------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeC---------CCcEEE
Q 003106 688 FSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG---------DGEIRY 750 (847)
Q Consensus 688 fsp~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~---------Dg~V~i 750 (847)
+ +++.++.|+.+ ..+.+||..+. . ...+.. ....-.+++.. + ..+++.|+. -..+.+
T Consensus 100 ~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~ 173 (306)
T 3ii7_A 100 A--EGKIYTSGGSEVGNSALYLFECYDTRTE-S-WHTKPSMLTQRCSHGMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEV 173 (306)
T ss_dssp E--TTEEEEECCBBTTBSCCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCEESCTTTCEECCCEEE
T ss_pred E--CCEEEEECCCCCCCcEeeeEEEEeCCCC-c-eEeCCCCcCCcceeEEEEE-C-CEEEEECCCCCCCCcccccceEEE
Confidence 3 56666777655 45899999873 2 222211 11111122222 3 346666653 345889
Q ss_pred EECCCCceE
Q 003106 751 WSINNGSCT 759 (847)
Q Consensus 751 WD~~~~~~~ 759 (847)
||+.+.+-.
T Consensus 174 yd~~~~~W~ 182 (306)
T 3ii7_A 174 YDPATETWT 182 (306)
T ss_dssp EETTTTEEE
T ss_pred eCCCCCeEE
Confidence 999887543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.1 Score=55.96 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=96.6
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE-EEEC--CCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAV-LWHT--DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~-vwd~--~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D 701 (847)
+.+++.+. ..+...+.++++.+++.+++++. +|.|. -+|- .+.+.+. ......+..+.+.+++..+ .++.+
T Consensus 151 G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 151 GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp TSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCC
Confidence 44565554 24566899999999988887765 45444 4443 2233321 2345678999999988654 55568
Q ss_pred CcEEEEECCCCCceEEEec-c---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC---CceEEEEEe
Q 003106 702 KTVRVWDADNPGYSLRTFM-G---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE---SFCCWCVNA 774 (847)
Q Consensus 702 g~V~iWD~~~~~~~~~~~~-~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~---~~~v~~~~~ 774 (847)
|.|++++.+. +.....+. . +...+.+|.|.+++. +++++ .+|.| ++....|+.-..+... ...+.++.+
T Consensus 225 G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp TEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred ceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence 8888875332 22222221 1 223588999998755 55444 47777 5555556544444321 234555655
Q ss_pred cCCCEEEEEcCCCcEEEEcC
Q 003106 775 MNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 775 ~~~~~l~~~~~~g~i~i~d~ 794 (847)
.+...+|.+..+|.|..++.
T Consensus 301 ~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EETTEEEEECSTTEEEEECC
T ss_pred ECCCceEEEcCCceEEEEcC
Confidence 55667888888888776653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.076 Score=55.74 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=71.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc---eeEE--EccCCCCeE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLK---SKTN--LEEHSSLIT 684 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~---~~~~--l~~h~~~I~ 684 (847)
..+.++|+.+. .+..+..+........++. -++++++.|+.+ ..|.+||..+.+ -... +........
T Consensus 31 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 34667777666 5555443332222222222 267788888765 468999988765 2221 211112222
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceE-EEeccCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEEC
Q 003106 685 DVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSI 753 (847)
Q Consensus 685 ~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~ 753 (847)
++.+ +++.++.|+.+ ..+.+||+.+..... ..+...... .+++.. + ..+++.|+.+ ..|.+||+
T Consensus 108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-S-GVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-T-TEEEEECCBCSSCBCCCEEEEET
T ss_pred EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-C-CEEEEECCCCCCcccceEEEEeC
Confidence 3333 46666666643 358899988732211 111111111 122222 3 3466677654 46899999
Q ss_pred CCCceEE
Q 003106 754 NNGSCTR 760 (847)
Q Consensus 754 ~~~~~~~ 760 (847)
.+.+-..
T Consensus 183 ~~~~W~~ 189 (301)
T 2vpj_A 183 HTGHWTN 189 (301)
T ss_dssp TTTEEEE
T ss_pred CCCcEEe
Confidence 8876443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.097 Score=54.97 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=69.9
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~f 688 (847)
.+.++|+.+. .+..+..+......-.++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.+
T Consensus 31 ~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 31 SVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred cEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 4667777766 55555433322222222222 67778887755 3588999886553322 1111112222333
Q ss_pred cCCCCEEEEEeCCC-----cEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-------CcEEEEECC
Q 003106 689 SPSMPRLATSSFDK-----TVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-------GEIRYWSIN 754 (847)
Q Consensus 689 sp~~~~Lasgs~Dg-----~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-------g~V~iWD~~ 754 (847)
+++.++.|+.++ .+.+||+.+. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~ 181 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSN-E-WFHVAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNAT 181 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETT
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCC-e-EeecCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCC
Confidence 466667776553 5788898863 2 222211 11111122222 3 3466666542 358899998
Q ss_pred CCceEE
Q 003106 755 NGSCTR 760 (847)
Q Consensus 755 ~~~~~~ 760 (847)
+.+...
T Consensus 182 ~~~W~~ 187 (302)
T 2xn4_A 182 TNEWTY 187 (302)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 876443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.23 Score=53.03 Aligned_cols=158 Identities=8% Similarity=-0.009 Sum_probs=96.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEccC-----C--CCeEEEEE---cCCCCEEEEEe----
Q 003106 635 RASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-----S--SLITDVRF---SPSMPRLATSS---- 699 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-----~--~~I~~v~f---sp~~~~Lasgs---- 699 (847)
......-.|++|++....|..++ ..++|..||...+......... . ..+..|.| .++++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444455899988666666666 7899999999865443332221 1 13689999 68876666543
Q ss_pred ---------CCCcEEEEECC---CCCceEEEe--cc-----------CCCCeEEEEEecCCCeEEEEEeCC-CcEEEEEC
Q 003106 700 ---------FDKTVRVWDAD---NPGYSLRTF--MG-----------HSASVMSLDFHPNKDDLICSCDGD-GEIRYWSI 753 (847)
Q Consensus 700 ---------~Dg~V~iWD~~---~~~~~~~~~--~~-----------h~~~V~sl~fsp~g~~ll~s~s~D-g~V~iWD~ 753 (847)
.+..|..||+. + ++.+... .. -...+..|+..++|.-+ ++++.. +.|..+|.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY-Vt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY-VAFALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE-EEEEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCCEE-EeCCCCCCeEEEEeC
Confidence 26779999998 5 3333222 11 11247889999998855 477777 77777766
Q ss_pred CCCceEEEEeeCC------ceEEEEEec-CCCEEEEEcCCCcEEEEcCC
Q 003106 754 NNGSCTRVFKVES------FCCWCVNAM-NRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 754 ~~~~~~~~~~~~~------~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~ 795 (847)
... .+..+.... .....+.+. +...++.....+.+..+|..
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 543 333332111 112234444 34455555558889888865
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.11 Score=57.34 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=75.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------eeEEEcc------CCCCeEEEEEcCC---CCEEEEE
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK------------SKTNLEE------HSSLITDVRFSPS---MPRLATS 698 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~------------~~~~l~~------h~~~I~~v~fsp~---~~~Lasg 698 (847)
.|..+..+|+|++||..+ +..|.|..+..+. ..+.+.- ....|..+.|||- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999999986 5688888876221 1123321 2467999999995 4589999
Q ss_pred eCCCcEEEEECCCCC-ceEEEec---------cCCCCeEEEEEecCCCeEEE-EEeCCCcEEEE
Q 003106 699 SFDKTVRVWDADNPG-YSLRTFM---------GHSASVMSLDFHPNKDDLIC-SCDGDGEIRYW 751 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~-~~~~~~~---------~h~~~V~sl~fsp~g~~ll~-s~s~Dg~V~iW 751 (847)
..|++||+||+.... .+. .+. .....|.+++|..++-.|.+ +.+.+|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999998522 222 332 12356889999987655443 23466777644
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=1.8 Score=47.71 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=131.5
Q ss_pred CCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 598 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 598 d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
|+.||+-.. .+....|-+.|+..+... ..+.+. --+.-.+|..+.||.=. ..++.|||+++...+..+.
T Consensus 35 DkyicVrE~----~~~~~~vvIiDl~~~~~~-~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~ 103 (494)
T 1bpo_A 35 DKFICIREK----VGEQAQVVIIDMNDPSNP-IRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 103 (494)
T ss_dssp TTEEEEEEC----CTTCCEEEEEETTSTTSC-EEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEec----CCCCCeEEEEECCCCCcc-eecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee
Confidence 445555433 223347888998876322 111111 11344567777776655 6789999999988888776
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEe------CCCc
Q 003106 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCD------GDGE 747 (847)
Q Consensus 678 ~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s------~Dg~ 747 (847)
-.+ .|.--+|-.+ +.|+-.+ +..|+-|++.....+++.|..|. ..|..-..+++.++++++|- -.|.
T Consensus 104 ~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 104 MTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred cCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 544 4555566543 3555554 67899999986567788887663 46777788899998887664 2467
Q ss_pred EEEEECCCCceEEEEeeCCceEEEEEecCC---CEEEEEc----CCCcEEEEcCCcc--cceee------ecccccCCCC
Q 003106 748 IRYWSINNGSCTRVFKVESFCCWCVNAMNR---PCLWDKL----DAGDIQISDSLFI--NANIF------CGLGWYGSDE 812 (847)
Q Consensus 748 V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~----~~g~i~i~d~~~~--~~~~~------~~~~~~~~~~ 812 (847)
+.+|.++.+. -..+.+|...-..+...+. ..+++.. .++.+.+.+.... ....+ ..+......+
T Consensus 181 mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D 259 (494)
T 1bpo_A 181 MQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 259 (494)
T ss_dssp EEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred EEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence 8889887553 3445555444333332221 1122211 2366777764321 00011 0011001111
Q ss_pred ccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 813 IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 813 ~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+.. +. .....++++.-..-|.|.+||+.|
T Consensus 260 FPva---mq-vs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 260 FPVA---MQ-ISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp CEEE---EE-EETTTTEEEEEETTSEEEEEETTT
T ss_pred ceeE---EE-ecccCCEEEEEecCceEEEEeccc
Confidence 1110 01 122456788888899999999876
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.68 Score=55.51 Aligned_cols=168 Identities=12% Similarity=0.121 Sum_probs=100.5
Q ss_pred cEEEEeccCCceeeEeEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-cc----CCCCeEEEEE
Q 003106 616 GGRGMDVSQGFSFKEANSV--RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EE----HSSLITDVRF 688 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~----h~~~I~~v~f 688 (847)
.+.++|..++ .+...... ......|.++....+|.+.+ |+.+ -|..||..+++..... .. ....|.+|..
T Consensus 122 Gl~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 198 (758)
T 3ott_A 122 GLYTYQLQSR-KLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLE 198 (758)
T ss_dssp EEEEEETTTC-CEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEE
T ss_pred cceeEeCCCC-eEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEE
Confidence 5667776654 23222110 11235688998887877665 4444 4778887765543211 11 1234889988
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-----
Q 003106 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 763 (847)
Q Consensus 689 sp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~----- 763 (847)
..++..|..|+. +-|..+|..+ +............|.+|....+|. +. .|+. +-|.++|..++.......
T Consensus 199 d~~~~~lWigt~-~Gl~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~ 273 (758)
T 3ott_A 199 DTTRQCVWIGTE-GYLFQYFPST-GQIKQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNI 273 (758)
T ss_dssp ETTTTEEEEEEE-EEEEEEETTT-TEEEEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCT
T ss_pred ECCCCEEEEEEC-CCCeEEcCCC-CeEEeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCc
Confidence 887776666663 5688899876 332211111234588888888876 44 3343 458888887765433221
Q ss_pred --eCCceEEEEEecCCCEEEEEcCCCcEEEE
Q 003106 764 --VESFCCWCVNAMNRPCLWDKLDAGDIQIS 792 (847)
Q Consensus 764 --~~~~~v~~~~~~~~~~l~~~~~~g~i~i~ 792 (847)
.....|.++..+....+|.++..| +.++
T Consensus 274 ~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 274 QSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp TSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred CcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 123458888888888999999877 4433
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.73 Score=49.89 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=89.8
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeC---C------------CcEEEEECCCCceeEE
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRAS-TSKVICCHFSSDGKLLATGGH---D------------KKAVLWHTDTLKSKTN 675 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~---D------------g~V~vwd~~~~~~~~~ 675 (847)
.+..|.+|++..+ .....+.++.+. -...+++++.++|++.++... | ..-+||.++.++. ..
T Consensus 137 ~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~ 215 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RV 215 (355)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EE
T ss_pred CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EE
Confidence 3567888887653 244555556543 346889999999998887641 1 2233444433333 23
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCce--EEEeccCCCCeEEEEEec-CCCeEEEEEeCC-CcEEE
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHP-NKDDLICSCDGD-GEIRY 750 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~--~~~~~~h~~~V~sl~fsp-~g~~ll~s~s~D-g~V~i 750 (847)
+...-..-+.|+|+||++.|+.+. ..+.|+.||+...+.. .+.+ ...+..-.+++++ +|. +++++..+ +.|..
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~ 293 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFF 293 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHS
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEE
Confidence 333334578999999999887665 5788999999753332 2233 2345677899998 576 55555534 35555
Q ss_pred EECCC--CceEEEEe
Q 003106 751 WSINN--GSCTRVFK 763 (847)
Q Consensus 751 WD~~~--~~~~~~~~ 763 (847)
||... +..+..+.
T Consensus 294 ~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 294 YDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCTTSCCCEEEEEEE
T ss_pred ECCCCCCCCEEEEEE
Confidence 55542 34444443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.28 Score=54.08 Aligned_cols=144 Identities=17% Similarity=0.060 Sum_probs=92.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEccC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------
Q 003106 647 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------- 713 (847)
Q Consensus 647 spdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h----~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~--------- 713 (847)
+.+|..|+.+- ++.||.-++.....-+.++.. -..|..+..+|+|++||..+ +.+|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34666676664 578888887744333344322 22588899999999998886 6689998887321
Q ss_pred --ceEEEecc------CCCCeEEEEEecCCCe--EEEEEeCCCcEEEEECCCC--ceEEEEeeC---------CceEEEE
Q 003106 714 --YSLRTFMG------HSASVMSLDFHPNKDD--LICSCDGDGEIRYWSINNG--SCTRVFKVE---------SFCCWCV 772 (847)
Q Consensus 714 --~~~~~~~~------h~~~V~sl~fsp~g~~--ll~s~s~Dg~V~iWD~~~~--~~~~~~~~~---------~~~v~~~ 772 (847)
...+.+.- ....|..+.|||-+.. -|++-..|+.||+||+... ++. .++.. ...+.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 11223322 2567999999997543 4447777999999999862 222 33211 1334455
Q ss_pred Eec-CCCEEEEEc--CCCcEEEEc
Q 003106 773 NAM-NRPCLWDKL--DAGDIQISD 793 (847)
Q Consensus 773 ~~~-~~~~l~~~~--~~g~i~i~d 793 (847)
+|. +...+|... ++|.|+...
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEES
T ss_pred EEcCCCcEEEEEecCCCCCEEEEC
Confidence 443 556788855 888887654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.24 Score=53.73 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=97.7
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeec-----CCCCEEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCC-c---eeEEE
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRA-----STSKVICCHFSS--DGK-LLATGGH---DKKAVLWHTDTL-K---SKTNL 676 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~-----h~~~V~~l~fsp--dg~-~Lasgs~---Dg~V~vwd~~~~-~---~~~~l 676 (847)
.+|.|.++|..+. ...+.+. +.+ ..-....|.+.+ +++ +|+.+.. +.+|.||+++.. . .+.++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 4567777887632 1222222 222 234566777755 454 4555533 467888877643 2 23334
Q ss_pred ccC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeE
Q 003106 677 EEH-SSLITDVRFSPSMPRLATSSF-----------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 677 ~~h-~~~I~~v~fsp~~~~Lasgs~-----------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
.+. -...+++++.++|.+.++... .|.|..||.. . +..+...-...+.|+|+||++.+
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEE
Confidence 332 235789999999987666541 2345555542 2 22332333567899999999988
Q ss_pred EEEEeCCCcEEEEECCC-Cce--EEEEeeCCceEEEEEecC-CCEEEEEc
Q 003106 739 ICSCDGDGEIRYWSINN-GSC--TRVFKVESFCCWCVNAMN-RPCLWDKL 784 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~l~~~~ 784 (847)
+++-+..+.|..||+.. ++. .+.+. .......+..+. ...+|.+.
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 88887889999999964 332 23442 234556666676 47788744
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.09 E-value=1.7 Score=52.00 Aligned_cols=167 Identities=9% Similarity=0.020 Sum_probs=100.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----cCCCCeEEEEEc
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-----EHSSLITDVRFS 689 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-----~h~~~I~~v~fs 689 (847)
..+.++|..+. .+... .......|.++.. .++ .|..|+.+ -|..||..+++.. .+. .....|.++...
T Consensus 82 ~Gl~~yd~~~~-~f~~~--~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d 154 (758)
T 3ott_A 82 NGILVYNYRAD-RYEQP--ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRT 154 (758)
T ss_dssp TEEEEEETTTT-EECCC--SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEEC
T ss_pred CCeEEEeCCCC-EEECc--ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEc
Confidence 34677887765 33321 1112345777765 355 56666665 5888998765543 331 123568898888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 690 p~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.++...+ |+.+ -|..||..+ +. ...+.. ....|.+|....++..+.+ |+. +-|..+|..+++......
T Consensus 155 ~~g~lWi-gt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 155 KDNQIYV-GTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp TTCCEEE-EETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EEE-EEEEEEETTTTEEEEEEE
T ss_pred CCCCEEE-EeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCEEEE-EEC-CCCeEEcCCCCeEEeccC
Confidence 7776444 5544 578888876 32 222211 1234888888877665443 332 458889988776433222
Q ss_pred eCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 764 VESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 764 ~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
.....|.++..+....+|.++.+ -+.+++..
T Consensus 229 l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 229 FHNNSIKSLALDGNGDLLAGTDN-GLYVYHND 259 (758)
T ss_dssp EEEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred CCCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence 23445788888888999999865 46667643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.15 Score=53.91 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=71.0
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----C-------CcEEEEECCCCceeEE--EccCCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----D-------KKAVLWHTDTLKSKTN--LEEHSS 681 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----D-------g~V~vwd~~~~~~~~~--l~~h~~ 681 (847)
..+.+||..+. .+.. ..+..........+...++++++.|+. + ..|.+||..+.+-... +.....
T Consensus 13 ~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 45778888877 5554 333333334444444558888888884 1 1277888876543221 111111
Q ss_pred CeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeC-C-----
Q 003106 682 LITDVRFSPSMPRLATSSFD--------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG-D----- 745 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~D--------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~-D----- 745 (847)
....+.+ +++.++.|+.+ ..|.+||..+. . ...+.. ....-.+++.. + ..+++.|+. +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF-K-WGESDPLPYVVYGHTVLSH-M-DLVYVIGGKGSDRKCL 164 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE-T-TEEEEECCBCTTSCBC
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC-c-EeECCCCCCcccceeEEEE-C-CEEEEEeCCCCCCccc
Confidence 1122222 45556666632 45899999873 2 222211 11111122222 3 347767765 2
Q ss_pred CcEEEEECCCCce
Q 003106 746 GEIRYWSINNGSC 758 (847)
Q Consensus 746 g~V~iWD~~~~~~ 758 (847)
..|.+||+.+.+-
T Consensus 165 ~~~~~yd~~~~~W 177 (315)
T 4asc_A 165 NKMCVYDPKKFEW 177 (315)
T ss_dssp CCEEEEETTTTEE
T ss_pred ceEEEEeCCCCeE
Confidence 4689999988753
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.2 Score=52.73 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=69.5
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----C-----CcEEEEECCCCceeEE--EccCCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----D-----KKAVLWHTDTLKSKTN--LEEHSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----D-----g~V~vwd~~~~~~~~~--l~~h~~~I 683 (847)
..+.++|..+. .+..+..+.........+.+ ++++++.|+. + ..|.+||..+.+-... +.......
T Consensus 39 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 115 (308)
T 1zgk_A 39 SYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 115 (308)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc
Confidence 34677777766 55555433222222222222 6777777775 2 4688899886543221 11111122
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEec---cCCCCeEEEEEecCCCeEEEEEeCC-----CcEEE
Q 003106 684 TDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 750 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~i 750 (847)
.++.+ +++.++.|+.+ ..|.+||+.+. . ...+. ........+.+ + ..+++.|+.+ ..|.+
T Consensus 116 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 116 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD-E-WHLVAPMLTRRIGVGVAVL--N-RLLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEE
T ss_pred EEEEE--CCEEEEEcCCCCCcccccEEEECCCCC-e-EeECCCCCccccceEEEEE--C-CEEEEEeCCCCCCcCceEEE
Confidence 23333 45566666543 45889998863 2 22221 11111122222 3 4577677654 46899
Q ss_pred EECCCCceE
Q 003106 751 WSINNGSCT 759 (847)
Q Consensus 751 WD~~~~~~~ 759 (847)
||+.+.+-.
T Consensus 189 yd~~~~~W~ 197 (308)
T 1zgk_A 189 YYPERNEWR 197 (308)
T ss_dssp EETTTTEEE
T ss_pred EeCCCCeEe
Confidence 999877543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.15 Score=55.18 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=61.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEc---cCCCCeEEEEEcCC---CCEEEEEeC-C-----Cc
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE---EHSSLITDVRFSPS---MPRLATSSF-D-----KT 703 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~---~h~~~I~~v~fsp~---~~~Lasgs~-D-----g~ 703 (847)
-....+|+|.|||+++++ ..+|.|++++ +++. +..+. ........|+|+|+ +..|+.+.. + +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345779999999985555 5679999998 3332 22221 12356899999998 556655443 2 67
Q ss_pred EEEEECCCCC-----ceEEEec---cCCCCeEEEEEecCCCeEEEEE
Q 003106 704 VRVWDADNPG-----YSLRTFM---GHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 704 V~iWD~~~~~-----~~~~~~~---~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
|..|+..... ..+..+. +.......|+|.|+|. |+++.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 8888876411 1122232 1112346799999985 55454
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.6 Score=49.25 Aligned_cols=135 Identities=8% Similarity=0.032 Sum_probs=68.5
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC----CC-------cEEEEECCCCceeEE--EccCCCCe
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----DK-------KAVLWHTDTLKSKTN--LEEHSSLI 683 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg-------~V~vwd~~~~~~~~~--l~~h~~~I 683 (847)
+.+||..+. .+.. ..+..........+...++++++.|+. ++ .+.+||..+.+-... +.......
T Consensus 26 ~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 26 AVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred eEEECCCCC-ceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 678888877 5554 233322233333444557888888883 12 177888876543221 11111112
Q ss_pred EEEEEcCCCCEEEEEeCC-------CcEEEEECCCCCceEEEeccCCCC--eEEEEEecCCCeEEEEEeC------CCcE
Q 003106 684 TDVRFSPSMPRLATSSFD-------KTVRVWDADNPGYSLRTFMGHSAS--VMSLDFHPNKDDLICSCDG------DGEI 748 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~D-------g~V~iWD~~~~~~~~~~~~~h~~~--V~sl~fsp~g~~ll~s~s~------Dg~V 748 (847)
..+.+ +++.++.|+.+ ..|.+||+.+.. ...+..-... -.+++. -+ ..+++.|+. -..|
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ET-TEEEEECCEESSSCBCCCE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-EC-CEEEEEcCCCCCCCccceE
Confidence 22223 45666777654 248888988632 2222111110 111222 23 346666653 2458
Q ss_pred EEEECCCCceE
Q 003106 749 RYWSINNGSCT 759 (847)
Q Consensus 749 ~iWD~~~~~~~ 759 (847)
.+||+.+.+-.
T Consensus 178 ~~yd~~~~~W~ 188 (318)
T 2woz_A 178 FIYNPKKGDWK 188 (318)
T ss_dssp EEEETTTTEEE
T ss_pred EEEcCCCCEEE
Confidence 99999887643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.51 E-value=1 Score=48.54 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=21.2
Q ss_pred CcceEEEecCCCeEeecCCCeEEeCCCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSNQLWDDKDLE 583 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~~iWD~~~~~ 583 (847)
.-..++|.|||+.++++...+|+-+++++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~~g~ 60 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFREGR 60 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEECCC
Confidence 34688999999988887767776655443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=2 Score=46.29 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=55.0
Q ss_pred CCEEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC--c-----ee-EEEcc-CCCCeEEEEEcCCCCEEEEE
Q 003106 639 SKVICCHFSSD---GKLLATGGH----D----KKAVLWHTDTL--K-----SK-TNLEE-HSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 639 ~~V~~l~fspd---g~~Lasgs~----D----g~V~vwd~~~~--~-----~~-~~l~~-h~~~I~~v~fsp~~~~Lasg 698 (847)
.....|+|+|+ +..|+++.. + ..|..|+.+.. . .+ ..+.. .......|+|.|||.++++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 45788999997 455544432 3 56777776543 1 11 11221 11134679999999866654
Q ss_pred eC-------------CCcEEEEECCCC--------CceEEEeccCCCCeEEEEEecCCCeEEEEE
Q 003106 699 SF-------------DKTVRVWDADNP--------GYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 699 s~-------------Dg~V~iWD~~~~--------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
+. .|.|..+|.+.. ...+. ..+|. ....|+|+|+...++++-
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEe
Confidence 32 245555555421 01121 23443 356899999434465443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.76 Score=51.61 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=62.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEcc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEE------HSSLITDVRFSPS---MPRLATSSF------ 700 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~------h~~~I~~v~fsp~---~~~Lasgs~------ 700 (847)
-...++|+|.|||+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346779999999997777544457888886555432 22221 2356789999996 555554432
Q ss_pred -------CCcEEEEECCCCC------ceE-EEec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 701 -------DKTVRVWDADNPG------YSL-RTFM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 701 -------Dg~V~iWD~~~~~------~~~-~~~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
...|.-|++.... +.+ ..+. ........|+|.|+|..++ +.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv-~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY-TIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE-EEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE-EEC
Confidence 2346666654311 111 1122 1123478899999997444 443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.29 E-value=1.4 Score=55.36 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=95.8
Q ss_pred CcEEEEeccCCceeeEeEEee-cCCCCEEEEEE---cCC-CCEEEEEe----------CCCcEEEEECCCCceeEEEc-c
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHF---SSD-GKLLATGG----------HDKKAVLWHTDTLKSKTNLE-E 678 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~f---spd-g~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~-~ 678 (847)
+.++++|..+. +.+..+. .....+.|++. ..+ ..+|+.|. ..|.|+||++..++.....+ .
T Consensus 807 s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 807 HNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 45677776644 3333332 22344555553 322 46888886 24789999987544332221 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--C
Q 003106 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--N 755 (847)
Q Consensus 679 h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~--~ 755 (847)
..+.|++|+-- +| +|++|- ..+|+|||+.. ...++ ....+ ..|..+.....+. +++.|+.-..|.++..+ .
T Consensus 884 v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~-~~~L~~~~~~~-~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTT-EKELRTECNHY-NNIMALYLKTKGD-FILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp ESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECT-TSCEEEEEEEC-CCSCEEEEEEETT-EEEEEESSBCEEEEEEETTT
T ss_pred cCCcCEEEeee-CC-EEEEEc-CCEEEEEECCC-CceEEEEeecc-ccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCC
Confidence 46788888744 24 555544 58899999986 33333 22112 1233223222344 45577766667665443 3
Q ss_pred CceEEEEe--eCCceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 756 GSCTRVFK--VESFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 756 ~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
++ +..+. ....++.++.+.....+..+...|.+.++.
T Consensus 958 ~~-L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 958 GN-FEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp TE-EEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred Ce-EEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEe
Confidence 33 33332 345667777776666777788888888775
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.66 Score=48.35 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v 686 (847)
...+.++|+.+. .++.+..+........++.+ ++++++.|+.+ ..|.+||+.+.+-... +........++
T Consensus 127 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 203 (301)
T 2vpj_A 127 HTSMERYDPNID-QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA 203 (301)
T ss_dssp CCEEEEEETTTT-EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cceEEEEcCCCC-eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE
Confidence 456788998877 67766655433222233333 67788888765 4688999887644322 11111122233
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECC
Q 003106 687 RFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSIN 754 (847)
Q Consensus 687 ~fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~ 754 (847)
.+ +++.++.|+.+ ..|.+||+++. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||++
T Consensus 204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPRCYVGATVL-R-GRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBEEEEEEEETT
T ss_pred EE--CCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCcccceeEEEE-C-CEEEEEcCcCCCcccccEEEEcCC
Confidence 33 45566677654 46899999873 2 222211 11111122222 3 3466677655 357788887
Q ss_pred CCce
Q 003106 755 NGSC 758 (847)
Q Consensus 755 ~~~~ 758 (847)
+.+.
T Consensus 278 ~~~W 281 (301)
T 2vpj_A 278 IDSW 281 (301)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.33 Score=52.59 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=61.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEc---cCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE---EHSSLITDVRFSPS---MPRLATSSF----D----K 702 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~---~h~~~I~~v~fsp~---~~~Lasgs~----D----g 702 (847)
-....+|+|.|||++++ +..+|.|+++|. +++ .+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997555 466799999974 444 222221 12356899999998 556655443 3 5
Q ss_pred cEEEEECCCCC------ce-EEEec-cCCCCeEEEEEecCCCeEEEEE
Q 003106 703 TVRVWDADNPG------YS-LRTFM-GHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 703 ~V~iWD~~~~~------~~-~~~~~-~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
.|..|+..... +. +..+. +.......|+|.|+|. |+++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE
Confidence 67778776421 11 11122 1112346799999986 55454
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.35 Score=52.34 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=81.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEE----ccCCCCeEEEEEcCC---CCEEEEEe-C-------
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNL----EEHSSLITDVRFSPS---MPRLATSS-F------- 700 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~---~~l----~~h~~~I~~v~fsp~---~~~Lasgs-~------- 700 (847)
.....|+|.|||++|+++..+|.|++++.+ +... ..+ .........|+|+|+ +..|+.+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 357899999999934455678999999854 3221 111 112345789999996 55555443 2
Q ss_pred CCcEEEEECCCCCc---eEEE-ecc------CCCCeEEEEEecCCCeEEEEEeC-------------CCcEEEEECCCC-
Q 003106 701 DKTVRVWDADNPGY---SLRT-FMG------HSASVMSLDFHPNKDDLICSCDG-------------DGEIRYWSINNG- 756 (847)
Q Consensus 701 Dg~V~iWD~~~~~~---~~~~-~~~------h~~~V~sl~fsp~g~~ll~s~s~-------------Dg~V~iWD~~~~- 756 (847)
...|..|++..... ...+ +.. .......|.|.|+|. |+++.+. .|.|.-+|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566666653211 1111 111 111235799999985 5555433 245666666532
Q ss_pred -----------ceEEEEeeCCceEEEEEecC-CCEEEEEcCC
Q 003106 757 -----------SCTRVFKVESFCCWCVNAMN-RPCLWDKLDA 786 (847)
Q Consensus 757 -----------~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~ 786 (847)
.....+.........++++. ...+|.....
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence 02223333334456666666 6677776544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.26 Score=49.47 Aligned_cols=142 Identities=12% Similarity=-0.006 Sum_probs=80.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~ 711 (847)
.+.+++|+|+|.+.++ .+|.+.-.+..+... -..+- +-.. ..++.|.++|.+.++ .||.|+-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999987666 677777666544211 11111 1111 478999999987666 469988887643
Q ss_pred CCce------EEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc------eEEEEe-eCCceEEEEEecCCC
Q 003106 712 PGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRVFK-VESFCCWCVNAMNRP 778 (847)
Q Consensus 712 ~~~~------~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------~~~~~~-~~~~~v~~~~~~~~~ 778 (847)
.+.. ...-.+--..+..|.|.|+|. |. +.. |+.+.-+...++. ....+. ........+.+....
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Ly-av~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LY-AVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EE-EEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCce-EE-EEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 2211 111111224679999999986 44 444 7776444333221 111222 222233334466777
Q ss_pred EEEEEcCCCcEE
Q 003106 779 CLWDKLDAGDIQ 790 (847)
Q Consensus 779 ~l~~~~~~g~i~ 790 (847)
.||.+. ++.+.
T Consensus 194 ~l~~v~-~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ-GGKFY 204 (236)
T ss_dssp CEEEEE-TTEEE
T ss_pred cEEEEe-CCeEE
Confidence 777777 55543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.05 E-value=4.6 Score=50.76 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred CcEEEEeccCCceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ccCCCCeEEEEEcCC-
Q 003106 615 AGGRGMDVSQGFSFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS- 691 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~I~~v~fsp~- 691 (847)
..|++.+.... ..+..++.. ...|.+++.+ +..++.++ ++.|.++.++.+...... ..-...|.|+++.+.
T Consensus 492 ~~Irli~~~~~---~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~ 565 (1158)
T 3ei3_A 492 ASVRLVSQEPK---ALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLG 565 (1158)
T ss_dssp SCEEEEESSSC---CEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred CEEEEEECCCC---eEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence 34566665432 233344432 3356666655 34666665 678888887765432211 123567999999864
Q ss_pred -----CCEEEEEeC-CCcEEEEECCCCCceEEEec-cCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEEC--CCCc
Q 003106 692 -----MPRLATSSF-DKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSI--NNGS 757 (847)
Q Consensus 692 -----~~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~-~h~~~V~sl~fsp~-g~~ll~s~s~Dg~V~iWD~--~~~~ 757 (847)
+++++.|.+ |++|+|+++.+ ...+.... +......+|.+..- +..+|..|-.||.+..+.+ .+|.
T Consensus 566 ~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~ 640 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL 640 (1158)
T ss_dssp SSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCC
T ss_pred CCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCc
Confidence 368999997 99999999986 44443322 22234555555432 3345667888998866554 4454
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.9 Score=48.99 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=67.3
Q ss_pred eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEE----ccCCCCeEEEEEcCC---CCEEEEE-e-
Q 003106 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL----EEHSSLITDVRFSPS---MPRLATS-S- 699 (847)
Q Consensus 631 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l----~~h~~~I~~v~fsp~---~~~Lasg-s- 699 (847)
+..+...-...+.|+|.|||++|++--..|.|++++.++++.. ..+ .........|+|+|+ +.+|+.+ +
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3334444567889999999998777655899999987655432 222 123456899999996 3455443 2
Q ss_pred -CCCcEEEEECCCC---------Cce-EEEec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 700 -FDKTVRVWDADNP---------GYS-LRTFM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 700 -~Dg~V~iWD~~~~---------~~~-~~~~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
.++.|.-|.+... .+. +..+. +.......|.|.|+|. |+++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 3555666665431 111 22222 1112345699999986 554543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.02 E-value=1.1 Score=47.21 Aligned_cols=138 Identities=8% Similarity=0.021 Sum_probs=78.3
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe--CCC--cE
Q 003106 643 CCHFSSDGKLLATGGHD--------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--FDK--TV 704 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~D--------------g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs--~Dg--~V 704 (847)
+--|+++|++|+-+... ..|+..+++..+... +... . +..|++++++|+-.. .++ .|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34557788888877543 367777877654332 3221 1 236777888888766 334 45
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc
Q 003106 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL 784 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 784 (847)
+.-+++ +.....+..+.. +.|+++++.|+.+......|.+-++..+.....+.+. .. ..+.......+|+..
T Consensus 132 y~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 132 YRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-CY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEEETT--SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-EE-EEEEEETTEEEEEEG
T ss_pred EEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-cc-ceeeecCCEEEEEEc
Confidence 555555 333445544433 4567788887766555678888888876655444322 11 122234555556554
Q ss_pred CC-CcEEEEc
Q 003106 785 DA-GDIQISD 793 (847)
Q Consensus 785 ~~-g~i~i~d 793 (847)
.+ ..|...+
T Consensus 204 ~~~~~I~~~~ 213 (302)
T 3s25_A 204 NRDNAIVHVN 213 (302)
T ss_dssp GGTTEEEEEC
T ss_pred CCCcEEEEEE
Confidence 33 2344444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.57 Score=48.91 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
..+.+||..+. .+..+..+........++.+ ++++++.|+.++ .|.+||+.+.+-... +........++.
T Consensus 77 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 153 (302)
T 2xn4_A 77 RTVDSYDPVKD-QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV 153 (302)
T ss_dssp CCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cceEEECCCCC-ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE
Confidence 46788898877 66666554433333333333 677888887654 577888876543322 111111122222
Q ss_pred EcCCCCEEEEEeCC-------CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEEC
Q 003106 688 FSPSMPRLATSSFD-------KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSI 753 (847)
Q Consensus 688 fsp~~~~Lasgs~D-------g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~ 753 (847)
+ +++.++.|+.+ ..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+
T Consensus 154 ~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 154 V--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL-N-NLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp E--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-T-TEEEEECCBSSSSBCCCEEEEET
T ss_pred E--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE-C-CEEEEECCCCCCcccceEEEEeC
Confidence 2 45556666542 358899998732 222211 11111122222 3 4577777654 46899999
Q ss_pred CCCceE
Q 003106 754 NNGSCT 759 (847)
Q Consensus 754 ~~~~~~ 759 (847)
++.+..
T Consensus 228 ~~~~W~ 233 (302)
T 2xn4_A 228 TTNAWR 233 (302)
T ss_dssp TTTEEE
T ss_pred CCCCEe
Confidence 887644
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.61 E-value=5.9 Score=42.53 Aligned_cols=26 Identities=12% Similarity=-0.151 Sum_probs=20.2
Q ss_pred CcceEEEecCCCeEeecC-CCeEEeCC
Q 003106 555 SKPLMMFGTDGAGTLTSP-SNQLWDDK 580 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~-~~~iWD~~ 580 (847)
.-..++|.|||+.+++.. ..+||-+.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~ 59 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVD 59 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEEC
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEE
Confidence 457899999999888877 66776554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.60 E-value=2.3 Score=44.88 Aligned_cols=134 Identities=4% Similarity=-0.021 Sum_probs=76.6
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEec
Q 003106 644 CHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFM 720 (847)
Q Consensus 644 l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~ 720 (847)
.+|+++++.|+-.+. ...|.+.+++.+.....+.+ ... +.++|++.+|+-...++ .|..-+++. .....+.
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt 223 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLT 223 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEe
Confidence 456778888886665 57888888876655444332 222 34669999888776543 455555554 3344443
Q ss_pred cCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEE
Q 003106 721 GHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 721 ~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~ 790 (847)
. ..+ ..|+|++.+++.+.. ..+.|..-++........... . +..+....+...|+....+.|.
T Consensus 224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~~~~i~ 287 (302)
T 3s25_A 224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFVSNKEY 287 (302)
T ss_dssp C--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETTTCCEE
T ss_pred C--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECCCCeEE
Confidence 2 233 347788887765433 245666667764433333322 1 3355555666666665555544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.12 Score=55.68 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccC-CCCeEEEEEc--CCCCEEEEE--eCCCcEEEEECCCCCceEEEecc----
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFS--PSMPRLATS--SFDKTVRVWDADNPGYSLRTFMG---- 721 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~I~~v~fs--p~~~~Lasg--s~Dg~V~iWD~~~~~~~~~~~~~---- 721 (847)
.+++.++.||.|.-+|.++|+.+.+++.. ..++..+.-. +.+..++.+ +.||.|..+|..+ +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 47889999999999999999999988754 1222221100 112234443 5899999999887 433222211
Q ss_pred CCCCeEE---EEE-ec---CCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 722 HSASVMS---LDF-HP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 722 h~~~V~s---l~f-sp---~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
..+++.. ... .+ .....+++++.+|.+...|+++|+.+..+...
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222211 000 00 01235668999999999999999999888754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.62 Score=48.74 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--EccCCCCeEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD------KKAVLWHTDTLKSKTN--LEEHSSLITD 685 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~vwd~~~~~~~~~--l~~h~~~I~~ 685 (847)
...+.++|+.+. .+..+..+........++.+ ++++++.|+.+ ..+.+||..+.+-... +........+
T Consensus 69 ~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 145 (306)
T 3ii7_A 69 IKRMDCYNVVKD-SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGM 145 (306)
T ss_dssp CCEEEEEETTTT-EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cceEEEEeCCCC-eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE
Confidence 456778888887 66666554433333333333 67788888765 4688999887653322 1111111222
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEE
Q 003106 686 VRFSPSMPRLATSSF---------DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIR 749 (847)
Q Consensus 686 v~fsp~~~~Lasgs~---------Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~ 749 (847)
+.+ +++.++.|+. -..|.+||+.+. ....+.. ....-.++... + ..+++.|+.+ ..|.
T Consensus 146 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 146 VEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV-K-DKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp EEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE-T-TEEEEECCEETTEEBCCEE
T ss_pred EEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE-C-CEEEEEeCCCCCCCCceEE
Confidence 222 4555566653 345889999873 2222221 11111222222 3 4466676643 4688
Q ss_pred EEECCCCce
Q 003106 750 YWSINNGSC 758 (847)
Q Consensus 750 iWD~~~~~~ 758 (847)
+||+.+.+-
T Consensus 220 ~yd~~~~~W 228 (306)
T 3ii7_A 220 YYDIKLNEW 228 (306)
T ss_dssp EEETTTTEE
T ss_pred EeeCCCCcE
Confidence 999988753
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.67 Score=48.77 Aligned_cols=136 Identities=10% Similarity=0.047 Sum_probs=70.0
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeE--EEccCCCCeEE
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD--------KKAVLWHTDTLKSKT--NLEEHSSLITD 685 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--------g~V~vwd~~~~~~~~--~l~~h~~~I~~ 685 (847)
.+.+||..+. .++.+..+........++.+ ++++++.|+.+ ..|.+||..+.+-.. .+........+
T Consensus 68 ~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 144 (315)
T 4asc_A 68 YFLQFDHLDS-EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTV 144 (315)
T ss_dssp EEEEEETTTT-EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ceEEecCCCC-eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeE
Confidence 3677888876 56555443322222222222 66777777742 458899988754322 11111111222
Q ss_pred EEEcCCCCEEEEEeC-C-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEE
Q 003106 686 VRFSPSMPRLATSSF-D-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDG-----EIRYWS 752 (847)
Q Consensus 686 v~fsp~~~~Lasgs~-D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~Dg-----~V~iWD 752 (847)
+. -+++.++.|+. + ..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.++ .|.+||
T Consensus 145 ~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 145 LS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATVH-D-GRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp EE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-T-TEEEEEEEECSSSEEEEEEEEE
T ss_pred EE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEEE-C-CEEEEEeccCCCCccceEEEEE
Confidence 22 24556666665 2 468999998732 222211 11111122222 3 35777777554 588999
Q ss_pred CCCCceEE
Q 003106 753 INNGSCTR 760 (847)
Q Consensus 753 ~~~~~~~~ 760 (847)
+.+.+-..
T Consensus 219 ~~~~~W~~ 226 (315)
T 4asc_A 219 ITDNKWAP 226 (315)
T ss_dssp TTTTEEEE
T ss_pred CCCCeEEE
Confidence 98875443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.63 Score=48.86 Aligned_cols=136 Identities=9% Similarity=0.111 Sum_probs=73.2
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
..+.++|+.+. .++.+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +........++.
T Consensus 90 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTN-QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCC-eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 45778888776 66665544333223333333 67777777644 3688899886543221 111111222333
Q ss_pred EcCCCCEEEEEeCC-----CcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCC
Q 003106 688 FSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINN 755 (847)
Q Consensus 688 fsp~~~~Lasgs~D-----g~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~~ 755 (847)
+ +++.++.|+.+ ..|.+||+.+. . ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||+.+
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERN-E-WRMITAMNTIRSGAGVCVL-H-NCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCC-e-EeeCCCCCCccccceEEEE-C-CEEEEEeCCCCCCccceEEEEeCCC
Confidence 3 45666666654 45889998863 2 222211 11111122222 3 4577777654 5689999988
Q ss_pred CceE
Q 003106 756 GSCT 759 (847)
Q Consensus 756 ~~~~ 759 (847)
.+..
T Consensus 241 ~~W~ 244 (308)
T 1zgk_A 241 ETWT 244 (308)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.8 Score=57.66 Aligned_cols=211 Identities=10% Similarity=0.133 Sum_probs=123.7
Q ss_pred CCCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecC----CCCEEEE
Q 003106 572 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRAS----TSKVICC 644 (847)
Q Consensus 572 ~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~l 644 (847)
....|+|+++-..... ..+...|..|..-+. .-..+..|..|++... ..++..+..| ...|..-
T Consensus 86 ~~lQiFnl~~k~klks-------~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKA-------HTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred CeEEEeehHHhhhhcc-------cccCCCceEEEecCCCeeEEEcCCeEEEeccCCC--CccHHHHhcchhcccCeeEEe
Confidence 3457888866543332 123344555533333 3445778899999652 2344444444 4567788
Q ss_pred EEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC--C-CEEEEEeC---CCcEEEEECCC
Q 003106 645 HFSSDGKLLATGG-------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--M-PRLATSSF---DKTVRVWDADN 711 (847)
Q Consensus 645 ~fspdg~~Lasgs-------~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~--~-~~Lasgs~---Dg~V~iWD~~~ 711 (847)
+.+++.++++..| -.|.+-+|.++.+ .-..+.||......+.+..+ . ..|+.+.. .+.++|-++..
T Consensus 157 ~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred eeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 8888999877554 3478889988743 33567778766555554321 2 23333322 37899999865
Q ss_pred C--Cc------eEEEecc---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCE
Q 003106 712 P--GY------SLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPC 779 (847)
Q Consensus 712 ~--~~------~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 779 (847)
. +. .+..+.. -.+-..++..++.-+ +++..+.-|.|.+||+.++.++..-+.....|...+.. ....
T Consensus 236 ~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g 314 (1630)
T 1xi4_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (1630)
T ss_pred CccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCc
Confidence 3 11 1111111 123344566666655 45566778999999999999987777666666555433 3345
Q ss_pred EEEEcCCCcEEEEc
Q 003106 780 LWDKLDAGDIQISD 793 (847)
Q Consensus 780 l~~~~~~g~i~i~d 793 (847)
+......|.|....
T Consensus 315 ~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 315 IIGVNRKGQVLSVC 328 (1630)
T ss_pred eEEEcCCceEEEEE
Confidence 55666666655443
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.12 Score=57.98 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHH-hhccchhhhHHhHHH
Q 003106 53 FEWWSVFWDIFIA-RTNEKHSEVAASYIE 80 (847)
Q Consensus 53 ~eWw~~fWdif~a-~~~~~~s~~~~sy~~ 80 (847)
.++|.++.+.+.. ...+...+.+...+.
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~eeal~~~~ 365 (449)
T 3iot_A 337 SAFWYAVRTAVINAASGRQTVDAALAAAQ 365 (449)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455555555432 223334444444333
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=1.8 Score=51.46 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=74.2
Q ss_pred cEEEEeccCCceeeEeE-E-----eecCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeE--EEccCCC
Q 003106 616 GGRGMDVSQGFSFKEAN-S-----VRASTSKVICCHFSSDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSS 681 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~-~-----l~~h~~~V~~l~fspdg~~Lasgs~Dg------~V~vwd~~~~~~~~--~l~~h~~ 681 (847)
.+.+||..+. .|..+. . +......-.++.+..++++++.||.++ .|.+||..+.+-.. .+.....
T Consensus 413 ~v~~yd~~~~-~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 413 EILQLSIHYD-KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CEEEEEECSS-CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred cEEEEECCCC-eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 3556676665 455544 2 111111222333322777888887543 57889988743322 1211111
Q ss_pred CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceEEEecc------CCCCeEEEEEecCCCeEEEEEeC--C-----C
Q 003106 682 LITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSCDG--D-----G 746 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg--~V~iWD~~~~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s~s~--D-----g 746 (847)
. .+++...+++.++.|+.++ .|.+||+.+.. ...+.. ......++.+..+...+++.|+. + +
T Consensus 492 ~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~ 568 (695)
T 2zwa_A 492 R-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568 (695)
T ss_dssp S-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred c-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence 1 2233323677778887654 79999998732 222211 12222335556553557777765 2 4
Q ss_pred cEEEEECCCCc
Q 003106 747 EIRYWSINNGS 757 (847)
Q Consensus 747 ~V~iWD~~~~~ 757 (847)
.|.+||+.+..
T Consensus 569 ~v~~yd~~~~~ 579 (695)
T 2zwa_A 569 KAIIFKYDAEN 579 (695)
T ss_dssp EEEEEEECTTC
T ss_pred cEEEEEccCCc
Confidence 58899998876
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.67 Score=49.81 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=44.2
Q ss_pred CEEEEE-eCCCcEEEEECCCCceeEEEcc----CCCCeEE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCCceEE
Q 003106 651 KLLATG-GHDKKAVLWHTDTLKSKTNLEE----HSSLITD---VRF-S----PSMPRLATSSFDKTVRVWDADNPGYSLR 717 (847)
Q Consensus 651 ~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~---v~f-s----p~~~~Lasgs~Dg~V~iWD~~~~~~~~~ 717 (847)
..++.. +.||.|..+|..+|.....+.. ...++.. ..+ . ..+..+++|+.+|++...|+++ +..+.
T Consensus 57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-G~~~W 135 (339)
T 2be1_A 57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-GEIIS 135 (339)
T ss_dssp EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTT-CCEEE
T ss_pred cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC-CcEEE
Confidence 334343 5899999999988755544431 1222221 000 0 1355889999999999999999 77777
Q ss_pred Eec
Q 003106 718 TFM 720 (847)
Q Consensus 718 ~~~ 720 (847)
.+.
T Consensus 136 ~~~ 138 (339)
T 2be1_A 136 AFG 138 (339)
T ss_dssp EES
T ss_pred EEe
Confidence 775
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.55 Score=47.09 Aligned_cols=134 Identities=13% Similarity=-0.028 Sum_probs=79.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc------eeEEEccC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----e
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLK------SKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-----S 715 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~------~~~~l~~h--~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~-----~ 715 (847)
.+.+|++...| +|++=.+.... ...++ ++ =..+++++|+|++.+.++ .+|.++-.+..+... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 66665554433 12222 22 246889999998875555 677766666543111 0
Q ss_pred EEEe-c-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCce-------EEEEeeCCceEEEEEecCCCEEEEEcCC
Q 003106 716 LRTF-M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-------TRVFKVESFCCWCVNAMNRPCLWDKLDA 786 (847)
Q Consensus 716 ~~~~-~-~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~-------~~~~~~~~~~v~~~~~~~~~~l~~~~~~ 786 (847)
-..+ . +-. ...++.|+++|. |.++ .||.|.-|+-.+... ..+-...-..+.++.+.....||++. +
T Consensus 79 ~t~IG~~Gw~-~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d 153 (236)
T 1tl2_A 79 AKKIGNGGWN-QFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G 153 (236)
T ss_dssp CEEEECSCGG-GCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T
T ss_pred ccEecccccc-cceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C
Confidence 1111 0 111 147899999987 4434 479998887644221 12222233456888899999999999 7
Q ss_pred CcEEE
Q 003106 787 GDIQI 791 (847)
Q Consensus 787 g~i~i 791 (847)
+.++-
T Consensus 154 g~lyr 158 (236)
T 1tl2_A 154 QQFYK 158 (236)
T ss_dssp TEEEE
T ss_pred CcEEe
Confidence 77644
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.55 E-value=13 Score=39.79 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=18.1
Q ss_pred cceEEEecCCC-eEeecCCCeEEeC
Q 003106 556 KPLMMFGTDGA-GTLTSPSNQLWDD 579 (847)
Q Consensus 556 ~~~v~~s~dG~-~~~~~~~~~iWD~ 579 (847)
-..++|.|||+ .++++...+||-+
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~ 44 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHW 44 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEE
Confidence 46789999999 7777766666544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.10 E-value=1.9 Score=46.08 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=39.3
Q ss_pred EEEEeccC-CceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeC-C---------CcEEEEECCCCceeEE--Ec-cCCC
Q 003106 617 GRGMDVSQ-GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGH-D---------KKAVLWHTDTLKSKTN--LE-EHSS 681 (847)
Q Consensus 617 v~vwd~~~-~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~-D---------g~V~vwd~~~~~~~~~--l~-~h~~ 681 (847)
+.++|+.+ ...++.+..+. .......++.+ ++++++.|+. + ..|.+||+.+.+-... +. ....
T Consensus 33 ~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~ 110 (357)
T 2uvk_A 33 WYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA 110 (357)
T ss_dssp EEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS
T ss_pred EEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc
Confidence 44566553 22455544433 11222222222 6777777776 2 4688999886543221 11 1111
Q ss_pred CeEEEEEcCCCCEEEEEeCC
Q 003106 682 LITDVRFSPSMPRLATSSFD 701 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~D 701 (847)
...++. .+++.++.|+.+
T Consensus 111 ~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 111 GHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp SEEEEE--ETTEEEEEECCC
T ss_pred cceEEE--ECCEEEEEeCcC
Confidence 222233 356677777754
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.01 E-value=1.2 Score=46.79 Aligned_cols=134 Identities=7% Similarity=0.076 Sum_probs=68.9
Q ss_pred EEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEE--EccCCCCeEEEE
Q 003106 617 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-------KKAVLWHTDTLKSKTN--LEEHSSLITDVR 687 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-------g~V~vwd~~~~~~~~~--l~~h~~~I~~v~ 687 (847)
+.++|..+. .+..+..+........++.+ ++++++.|+.+ ..|.+||..+.+-... +......-.++.
T Consensus 80 ~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSS-EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTT-EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred EEEEeCCCC-cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 677888776 66665444332222223333 67788888764 2478888876543322 111101111222
Q ss_pred EcCCCCEEEEEeC------CCcEEEEECCCCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECC
Q 003106 688 FSPSMPRLATSSF------DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSIN 754 (847)
Q Consensus 688 fsp~~~~Lasgs~------Dg~V~iWD~~~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~ 754 (847)
.+++.++.|+. -..|.+||+.+.. ...+.. ....-.+++.. + ..+++.|+.+ ..|.+||++
T Consensus 157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIH-K-GKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp --ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-T-TEEEEEEEEETTEEEEEEEEEETT
T ss_pred --ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEE-C-CEEEEEcCcCCCCccceEEEEECC
Confidence 24556666653 2358999998732 222211 11111122222 3 3566677643 357789998
Q ss_pred CCceE
Q 003106 755 NGSCT 759 (847)
Q Consensus 755 ~~~~~ 759 (847)
+.+..
T Consensus 231 ~~~W~ 235 (318)
T 2woz_A 231 TNKWE 235 (318)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 77543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.61 E-value=1.6 Score=46.65 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=25.8
Q ss_pred CcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCC
Q 003106 615 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHD 659 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~D 659 (847)
..+.+||+.+. .++.+..+. .......++. .++++++.|+.+
T Consensus 86 ~~v~~yd~~~~-~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 86 NDVHKYNPKTN-SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp CCEEEEETTTT-EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred ccEEEEeCCCC-cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 56788998887 666665544 2222222333 477888888865
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.07 E-value=4.4 Score=51.22 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=85.8
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~ 693 (847)
...|.|.|+..+... ..+.+ .--+.-.+|..+.||.=. ..++.|||+++...+..+.-.. .|.--+|-.+.
T Consensus 47 ~~~vvIidl~~~~~~-~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP-IRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCc-ccccc-----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-
Confidence 337888888875221 11111 112334567667666654 6789999999887777665433 46566676443
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEeccC----CCCeEEEEEecCCCeEEEEEe------CCCcEEEEECCCC
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMGH----SASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNG 756 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h----~~~V~sl~fsp~g~~ll~s~s------~Dg~V~iWD~~~~ 756 (847)
.|+..+ +..|..|++.....+++.|..| ...|..-..+++.++++++|- -.|.+.+|.++.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 444444 5789999997545566666655 456777788899998887764 2477888887754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.00 E-value=5.7 Score=44.36 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCEEEEEEcCC---CCEEEEEeC-------------CCcEEEEECCCC--c-----eeE-EEcc-CCCCeEEEEEcCCC
Q 003106 638 TSKVICCHFSSD---GKLLATGGH-------------DKKAVLWHTDTL--K-----SKT-NLEE-HSSLITDVRFSPSM 692 (847)
Q Consensus 638 ~~~V~~l~fspd---g~~Lasgs~-------------Dg~V~vwd~~~~--~-----~~~-~l~~-h~~~I~~v~fsp~~ 692 (847)
...+..|+|+|| +.+|+.+.. ...|.-|+.+.. . .+. .+.. .......|+|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 466889999995 555544432 134555554321 1 111 1221 12347899999999
Q ss_pred CEEEEEeCC--------------------------------CcEEEEECCCCCc-----------eEEEe-ccCCCCeEE
Q 003106 693 PRLATSSFD--------------------------------KTVRVWDADNPGY-----------SLRTF-MGHSASVMS 728 (847)
Q Consensus 693 ~~Lasgs~D--------------------------------g~V~iWD~~~~~~-----------~~~~~-~~h~~~V~s 728 (847)
.++++.+.. |.|.-+|.+ +. ....+ .+| ..+..
T Consensus 156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d--G~ip~~Npf~~~~~~ei~a~G~-RNp~g 232 (454)
T 1cru_A 156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD--GSIPKDNPSFNGVVSHIYTLGH-RNPQG 232 (454)
T ss_dssp CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT--SCCCTTCCEETTEECSEEEBCC-SEEEE
T ss_pred eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC--CCCCCCCCCCCCCcceEEEECC-CCcce
Confidence 876665532 233333333 22 11222 345 35788
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 729 LDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 729 l~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
|+|+++|..+++-.+.++.-.|.-++.|
T Consensus 233 la~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 233 LAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp EEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred EEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 9999987644444455555556555543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.76 E-value=20 Score=38.54 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=71.6
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCC----cEEEEECCCCceeEEEcc--------------CCCCeEEEEEcCC--CCEEE
Q 003106 638 TSKVICCHFSS-DGKLLATGGHDK----KAVLWHTDTLKSKTNLEE--------------HSSLITDVRFSPS--MPRLA 696 (847)
Q Consensus 638 ~~~V~~l~fsp-dg~~Lasgs~Dg----~V~vwd~~~~~~~~~l~~--------------h~~~I~~v~fsp~--~~~La 696 (847)
...|.+|++.| +...|..++..| .|...+ +.++....+.. ....|.+|++.|. ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 334444444444 343332 33333222211 1125888999873 45666
Q ss_pred EEeCCCcEEEEECCCCCceEEEecc-------------------CCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMG-------------------HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~-------------------h~~~V~sl~fsp~g-~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
++..++.|... ...+.....+.. ....|.+|.++|.. ..+++... ++.|...+ ..+
T Consensus 133 ~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DAG 208 (394)
T ss_dssp EEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-STT
T ss_pred EEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCC
Confidence 66656655544 322333333321 12357899999843 34554433 34343332 122
Q ss_pred ceEEEEeeC-------------CceEEEEEecCC--CEEEEEcCCC
Q 003106 757 SCTRVFKVE-------------SFCCWCVNAMNR--PCLWDKLDAG 787 (847)
Q Consensus 757 ~~~~~~~~~-------------~~~v~~~~~~~~--~~l~~~~~~g 787 (847)
+.-..+... ...+.++..+.. ..+|.+...+
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222222110 123666665543 6788876655
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.57 E-value=25 Score=37.79 Aligned_cols=141 Identities=10% Similarity=0.012 Sum_probs=70.2
Q ss_pred CCEEEEEEcC-C-CCEEEEEeCCCcEEEEECCCCceeEEEcc-------------------CCCCeEEEEEcCC-CCEEE
Q 003106 639 SKVICCHFSS-D-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-------------------HSSLITDVRFSPS-MPRLA 696 (847)
Q Consensus 639 ~~V~~l~fsp-d-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------------------h~~~I~~v~fsp~-~~~La 696 (847)
..|.+|++.| + ...|+.++.++.|...+ +.++....+.. ....|.+|.++|. ...|+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3588899987 3 45566666666555543 22333222211 1235889999984 44565
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccC-------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGH-------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h-------------~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.+..++.|... ...+.....+... ...|.+|.+++.....|+.+...+ |...+-. ++.-..+.
T Consensus 194 vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~ 269 (394)
T 3b7f_A 194 IGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIG 269 (394)
T ss_dssp EEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGG
T ss_pred EEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECC
Confidence 55545544433 2223333332210 124889999987433444555443 4444322 33222222
Q ss_pred e--CC---ceEEEEEec--CCCEEEEEc
Q 003106 764 V--ES---FCCWCVNAM--NRPCLWDKL 784 (847)
Q Consensus 764 ~--~~---~~v~~~~~~--~~~~l~~~~ 784 (847)
. .. ..+.++..+ +...+|.+.
T Consensus 270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 270 DAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp GGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 1 11 234455544 455677664
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=88.61 E-value=26 Score=36.74 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=102.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcee-------E--EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---C---
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSK-------T--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P--- 712 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~-------~--~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~---~--- 712 (847)
++..++++.+.+|.|+-..+...+.. . .++ ..+.+..+........++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46778999999999998876543221 1 122 234455655555666788888899877766532 1
Q ss_pred --Cce---EEEeccCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 --GYS---LRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 --~~~---~~~~~~h~~~V~sl~fsp---~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+.. ...+. -...|.++...+ +..+ |+..+.+|.++...+.. |.....+......+........
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~-ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAY-LLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCE-EEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCE-EEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 110 01122 223455554332 2343 44778899999988743 2222233333344444444556
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCCc-cccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..++..+..|.+..+........-....+....... ...+-.+.... .+..|++.+..|.++...+.-|
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHh
Confidence 678888888888777644321111111111110000 00011111111 3456778888998888877543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=5.6 Score=47.08 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEE-----ccCCCCeEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNL-----EEHSSLITDV 686 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l-----~~h~~~I~~v 686 (847)
-..+.+||..+. .|+.+..+......-.++.+ .++++++.||.++ .|.+||..+.+-...- ........++
T Consensus 467 ~~dv~~yd~~t~-~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 467 LSDNWIFDMKTR-EWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp CCCCEEEETTTT-EEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred cccEEEEeCCCC-cEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence 345788998887 67766554332222223332 3788888888655 7999998875432211 1112222335
Q ss_pred EEcCC-CCEEEEEeC--C-----CcEEEEECCCCCc----eEEEecc---CCCCeEEEEEecCCCeEEEEEeCC------
Q 003106 687 RFSPS-MPRLATSSF--D-----KTVRVWDADNPGY----SLRTFMG---HSASVMSLDFHPNKDDLICSCDGD------ 745 (847)
Q Consensus 687 ~fsp~-~~~Lasgs~--D-----g~V~iWD~~~~~~----~~~~~~~---h~~~V~sl~fsp~g~~ll~s~s~D------ 745 (847)
.+..+ ++.++.|+. + ..|.+||+.+... ....+.. ....-.+++...++ .+++.|+.+
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCC
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCC
Confidence 55555 556666665 2 3588999987431 0111111 11111223333323 466677642
Q ss_pred --CcEEEEECCCCceE
Q 003106 746 --GEIRYWSINNGSCT 759 (847)
Q Consensus 746 --g~V~iWD~~~~~~~ 759 (847)
..|.+||+.+.+..
T Consensus 624 ~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 624 RTNSIISLDPLSETLT 639 (695)
T ss_dssp TTTSEEEEETTTTEEE
T ss_pred CCCeEEEEECCCCeEE
Confidence 45888888877543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=87.74 E-value=4.6 Score=45.89 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-----------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 003106 682 LITDVRFSPSMPRLATSS-FDKTVRVWDADNP-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~-----------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~ 749 (847)
....|.++|||+++++++ .+.+|.|+|++.. ..++..-..-.-.....+|.++| +.+.|...|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 345788999999987766 5899999999841 11122111234457889999998 5666777899999
Q ss_pred EEECCC
Q 003106 750 YWSINN 755 (847)
Q Consensus 750 iWD~~~ 755 (847)
.|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999964
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.02 E-value=49 Score=39.01 Aligned_cols=194 Identities=8% Similarity=0.014 Sum_probs=96.5
Q ss_pred eEEEecCCCeEee----cCCC----eEEeCCCCchhhccccccccC-C---CCCceEEeeecCC-------------CCC
Q 003106 558 LMMFGTDGAGTLT----SPSN----QLWDDKDLELRADMDRLVEDG-S---LDDNVESFLSHDD-------------TDP 612 (847)
Q Consensus 558 ~v~~s~dG~~~~~----~~~~----~iWD~~~~~~~~~~~~~~~~g-~---~d~~v~~~~s~d~-------------t~~ 612 (847)
..+++|||++++. ++++ +++|+.++++.++.-.-...+ . ....+..|...++ ..+
T Consensus 134 ~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 134 VSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp EEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred eeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 4458889887655 3444 789999998775321100000 0 0001212221111 222
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCC-EEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEEccCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSK-VICCHFSSDGK-----LLATGGHD---KKAVLWHTDT--LKSKTNLEEHSS 681 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~l~fspdg~-----~Lasgs~D---g~V~vwd~~~--~~~~~~l~~h~~ 681 (847)
....|+.|.+-+... .-...+.+.... -..+..+.|++ .+++.+.| ..+.+.|++. ++. ..+.....
T Consensus 214 ~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 291 (711)
T 4hvt_A 214 YPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD 291 (711)
T ss_dssp SBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT
T ss_pred CCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc
Confidence 345677887766521 222233333333 33455666776 24544423 3456666653 332 23322222
Q ss_pred CeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC------CceEEE-ec-cCCCCeEEEEEecCCCeEEEEEe
Q 003106 682 LITDVRFSPSMPRLATS----------SFDKTVRVWDADNP------GYSLRT-FM-GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasg----------s~Dg~V~iWD~~~~------~~~~~~-~~-~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
. .+..+.++.+++.. ...+.|.+.|+.+. ...... +. .....+..+.|..+ .++++..
T Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~ 367 (711)
T 4hvt_A 292 A--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATY 367 (711)
T ss_dssp C--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEE
T ss_pred c--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEE
Confidence 1 12233345444422 24677999998762 122333 32 22345677888765 4776777
Q ss_pred CCCc--EEEEECCCCc
Q 003106 744 GDGE--IRYWSINNGS 757 (847)
Q Consensus 744 ~Dg~--V~iWD~~~~~ 757 (847)
.++. |.++|+.++.
T Consensus 368 ~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ETTEEEEEEECEETTE
T ss_pred ECCEEEEEEEECCCCc
Confidence 7764 6677776664
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=84.95 E-value=6.8 Score=44.56 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=82.0
Q ss_pred cEEEEeccCCce-eeEeEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC------ce-------eEEEccCC
Q 003106 616 GGRGMDVSQGFS-FKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTL------KS-------KTNLEEHS 680 (847)
Q Consensus 616 ~v~vwd~~~~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~------~~-------~~~l~~h~ 680 (847)
.+.+.|...... ...+..+-.-......|.++|||++++.++. +.+|.|+|+++. +. +...+ -.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 477888765100 0112112122334557899999999888765 789999998742 11 12222 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------CceEEEeccCCCCeEEEEE------ecCCCeEEEEE--e
Q 003106 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNP---------GYSLRTFMGHSASVMSLDF------HPNKDDLICSC--D 743 (847)
Q Consensus 681 ~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~---------~~~~~~~~~h~~~V~sl~f------sp~g~~ll~s~--s 743 (847)
......+|.++|....|.-.|..|..|++... ...+..+.-|-.. -.+.- .++|++|++-+ +
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~s 456 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFS 456 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCC
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccc
Confidence 45678999999944444557999999999752 2345555544332 22222 46777665332 3
Q ss_pred CCCcE----------EEEECCCCc
Q 003106 744 GDGEI----------RYWSINNGS 757 (847)
Q Consensus 744 ~Dg~V----------~iWD~~~~~ 757 (847)
.|+.+ .++|+...+
T Consensus 457 kdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 457 KDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp TTSSCCCSSSCCEEEEEEECSSSS
T ss_pred cccCcCCCCCCCCcceeEecCCCc
Confidence 34433 677776543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.42 E-value=46 Score=35.11 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=85.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-------eeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CC-------
Q 003106 649 DGKLLATGGHDKKAVLWHTDTLK-------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD--NP------- 712 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~~~~~-------~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~--~~------- 712 (847)
+..++++++.+|.|+...+.... ....++. .+.+..+........|+..+.+|.+..+.+. .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 57899999999999998865422 2223433 3556666555566788888889998888776 21
Q ss_pred -CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-------ceEEEEe--e-CCceEEEEEecCCCEEE
Q 003106 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRVFK--V-ESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-------~~~~~~~--~-~~~~v~~~~~~~~~~l~ 781 (847)
+.....+. ....|.++...+.+..+ +.++..|.++.-.+... +-+..++ . ....+.+........++
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~l-l~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYL-LVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEE-EEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEE-EEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 11111122 24557666665554544 47788999998876421 2222222 2 22334444344555666
Q ss_pred EEcCCCcEEEEcC
Q 003106 782 DKLDAGDIQISDS 794 (847)
Q Consensus 782 ~~~~~g~i~i~d~ 794 (847)
..+..|.+..+..
T Consensus 265 l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 265 AVTSGGGVIRTAA 277 (327)
T ss_dssp EEEGGGCEEEEEG
T ss_pred EEcCCCeEEEEeh
Confidence 7777777666653
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.32 E-value=47 Score=34.67 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=99.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeE---------EEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---CCC---
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKT---------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP--- 712 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~---------~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~---~~~--- 712 (847)
|+..++++.+.+|.|+--.+...+..+ .++. .+.+..+........|+..+..|.++-+.+ ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 356678899999999887765433211 1222 344555555555667777778888665544 321
Q ss_pred --CceEE---EeccCCCCeEEEEEe---cCCCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 --GYSLR---TFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 --~~~~~---~~~~h~~~V~sl~fs---p~g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+..+. .+. ....|.++..- .++. .++..+.+|.++...+.. |.....+..+...+........
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 11111 122 23456555432 2334 345788899999997742 2222223334444444444556
Q ss_pred CEEEEEcCCCcEEEEcCCcccceeeecccccCCCC-ccccccccccccCCCcEEEEEeCCCeEEEEEccCC
Q 003106 778 PCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE-IPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gty 847 (847)
..+...+..|.+..+........-....+...... ....+..+.... ++..|++.+..|.++-..+.-|
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~ 227 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEY 227 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGS
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHh
Confidence 67888888888777764332211111111111000 000111111111 2346888888888887776433
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=83.30 E-value=42 Score=36.18 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=85.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC---------CceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCCC--
Q 003106 647 SSDGKLLATGGHDKKAVLWHTDT---------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD---ADNP-- 712 (847)
Q Consensus 647 spdg~~Lasgs~Dg~V~vwd~~~---------~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD---~~~~-- 712 (847)
-++..++++.+.+|.|+--.+.. +.....++ ..+.+..+........|+..+..|.++-+. +...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46788999999999999865432 12222333 355677776666677788788888766554 3321
Q ss_pred ---CceEE---EeccCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCC-------CceEEEEeeCCceEEEEEecCC
Q 003106 713 ---GYSLR---TFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINN-------GSCTRVFKVESFCCWCVNAMNR 777 (847)
Q Consensus 713 ---~~~~~---~~~~h~~~V~sl~fsp~--g~~ll~s~s~Dg~V~iWD~~~-------~~~~~~~~~~~~~v~~~~~~~~ 777 (847)
+..+. .+. ....|.++....+ ....|+.++..|.++...+.. |.....++.....+........
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 11111 122 2345655544321 223455888899999988643 2222233333444544444555
Q ss_pred CEEEEEcCCCcEEEEcC
Q 003106 778 PCLWDKLDAGDIQISDS 794 (847)
Q Consensus 778 ~~l~~~~~~g~i~i~d~ 794 (847)
..++..+..|.+..+..
T Consensus 162 ~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGE 178 (370)
T ss_dssp CEEEEEETTSEEEEEEG
T ss_pred ceEEEEeCCCeEEEEEc
Confidence 67777888888777763
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=83.17 E-value=16 Score=37.80 Aligned_cols=143 Identities=17% Similarity=0.073 Sum_probs=71.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|..|+...+ ..++. . ||.|+.|-......+..-..-...|..|+...+ +.+.-. ||.|+.|-....+..- ..
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VP 136 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CC
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CC
Confidence 4555555433 23333 4 888888876532111111111245777766533 444445 9999999876533321 11
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
......|..|+.-.. +.+ .-. ||.|..|-......+..-......+..++.-....+ .. ++|.++.|-..
T Consensus 137 ~~~~~~i~~i~~G~~--~~~-~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al-~~G~v~~wG~n 206 (282)
T 3qhy_B 137 AEAQSGVTALDGGVY--TAL-AVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL-KDGKVIAWGDN 206 (282)
T ss_dssp GGGGSSEEEEEECSS--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred ccCCCCeEEEEcccC--EEE-EEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence 112345766665433 223 234 789999976542111100001123444443333333 33 58888888643
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=81.53 E-value=39 Score=35.63 Aligned_cols=196 Identities=6% Similarity=-0.075 Sum_probs=100.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC----ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC---CCC-----Cce
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP-----GYS 715 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~---~~~-----~~~ 715 (847)
++..++++.+.+|.|+--.+... .....++. .+.+..+........|+..+..|.++-+.+ ... +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56778899999999987765421 11112333 345555555556667888888888665544 221 111
Q ss_pred EE---EeccCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCC--------CceEEEEeeCCceEEEEEecCCCEEE
Q 003106 716 LR---TFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINN--------GSCTRVFKVESFCCWCVNAMNRPCLW 781 (847)
Q Consensus 716 ~~---~~~~h~~~V~sl~fsp~---g~~ll~s~s~Dg~V~iWD~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~ 781 (847)
+. .+. -...|.++....+ +. .++.++.+|.++...+.. |.....++.....+..........++
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 11 121 2334555433332 33 455788999999998742 22222333333444444445566788
Q ss_pred EEcCCCcEEEEcCCcccceeeecccccCCCCc-cccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 782 DKLDAGDIQISDSLFINANIFCGLGWYGSDEI-PAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 782 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
..+..|.+..+........-....+....... ...+..+.....+...|++.+..|..+...+.-
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 88888888777644322111111111111100 001111111121222677778888877766543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.88 E-value=17 Score=40.56 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---ceeEEEc---c------CCCCeEEEEEcCC---CCEEEEE-eC-
Q 003106 639 SKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---KSKTNLE---E------HSSLITDVRFSPS---MPRLATS-SF- 700 (847)
Q Consensus 639 ~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~---~~~~~l~---~------h~~~I~~v~fsp~---~~~Lasg-s~- 700 (847)
..-+.|+|.|||. +|+++...|.|++++.+.. ..+..+. . .......|+|+|+ ..+|+.. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 5556678899999975422 1222222 1 1356889999997 2344332 21
Q ss_pred -C----------CcEEEEECCCC---------CceEEEec--cCCCCeEEEEEecCCCeEEEEEe
Q 003106 701 -D----------KTVRVWDADNP---------GYSLRTFM--GHSASVMSLDFHPNKDDLICSCD 743 (847)
Q Consensus 701 -D----------g~V~iWD~~~~---------~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s 743 (847)
+ ..|.-|.+... .+.+..+. ........|.|.|||. |+++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence 2 13444655421 12222222 1123467899999996 444544
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.11 E-value=9 Score=47.10 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 003106 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE 677 (847)
Q Consensus 639 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~ 677 (847)
..|.+++..++..+|+|-+.|+++|||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888899999999999999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 847 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-15 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 7e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 9e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 8e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1fxza1 | 239 | b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe | 8e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| g1pnb.1 | 106 | a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) | 0.001 | |
| d2crua1 | 105 | a.5.6.1 (A:8-112) Programmed cell death protein 5 | 0.002 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d1g9la_ | 144 | a.144.1.1 (A:) poly(A) binding protein {Human (Hom | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.3 bits (230), Expect = 3e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 589 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 647
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 1e-17
Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 687 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 726
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772
+ FH I SC D +R W N C + +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 3e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 687 RFSPSMPRLATSSFDKTVRVWD 708
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.5 bits (171), Expect = 1e-13
Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 44/218 (20%)
Query: 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV-- 686
E ++ S V F ++ + D +W +T + L+ H+ + D+
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 687 ----------------------------------------RFSPSMPRLATSSFDKTVRV 706
P+ + ++S DKT+++
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
W+ Y ++TF GH V + + + LI SC D +R W + C +
Sbjct: 128 WEVQTG-YCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 767 FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCG 804
C++ +A + S + G
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (157), Expect = 8e-12
Identities = 26/149 (17%), Positives = 41/149 (27%), Gaps = 20/149 (13%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
+G + + DK +W T H + VR + +A+ S D+
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK-------------------DDLICSCD 743
TVRVW H V + + P + S
Sbjct: 166 TVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224
Query: 744 GDGEIRYWSINNGSCTRVFKVESFCCWCV 772
D I+ W ++ G C V
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.1 bits (131), Expect = 1e-08
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764
+ W P GH + V + FHP ++ S D I+ W G R K
Sbjct: 1 KEWIPRPP--EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKG 57
Query: 765 ESFCCWCVNAMNRPCLW 781
+ ++ + L
Sbjct: 58 HTDSVQDISFDHSGKLL 74
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.5 bits (215), Expect = 4e-19
Identities = 27/128 (21%), Positives = 38/128 (29%), Gaps = 4/128 (3%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL--WHTDTLKSKTNLEEHSSLIT 684
+ S + F +G ATG D L D + + IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 685 DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
V FS S L D VWDA GH V L + + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 745 DGEIRYWS 752
D ++ W+
Sbjct: 333 DSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.2 bits (191), Expect = 5e-16
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 2/133 (1%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
V+ + D +L +G D A LW + H S I + F P+ AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 701 DKTVRV-WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
D T R+ + + + S+ F + L+ + D W
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305
Query: 760 RVFKVESFCCWCV 772
V C+
Sbjct: 306 GVLAGHDNRVSCL 318
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 9/206 (4%)
Query: 583 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 642
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 703 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 760 RVFKVESFCCWCVNAMNRPCLWDKLD 785
+ R + D
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACD 205
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 4e-07
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWC 771
TF GH + + ++ F PN + + D R + + + ++ C
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.2 bits (113), Expect = 2e-06
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 1/113 (0%)
Query: 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN 776
RT GH A + ++ + + L+ S DG++ W + + S
Sbjct: 49 RTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 777 RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECC 829
+I +L + +
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.8 bits (200), Expect = 4e-17
Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 3/144 (2%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 698
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 759 TRVFKVESFCCWC-VNAMNRPCLW 781
V K V +++
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNS 153
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.0 bits (151), Expect = 5e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 757
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 8/229 (3%)
Query: 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 681
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 682 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 739
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 740 CSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINA 799
+ D + R +S W +++ + N
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPA---PTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213
Query: 800 NIFCGLGWYGSDEIPAPSWKVSCRSCRECCL-YTGCGDSSLSSFIAGTY 847
+ + + + K++ + L + SS +A +
Sbjct: 214 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 701
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 702 KTVRVWDADNPGYSLRTF 719
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (194), Expect = 2e-16
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 678
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 679 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 734
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 735 --KDDLICSCDGDGEIRYWSI 753
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 2e-14
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 19/156 (12%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 695
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 696 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 744
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 745 DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780
D + +W +G+ + + V N L
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 8e-08
Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 34/202 (16%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
TS V C FS+DG+ LATG +K ++ L + S+ D +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS----- 115
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+ + S+ F P+ L + + N
Sbjct: 116 --------------------SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155
Query: 758 CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPS 817
+ E + L ++I D + I
Sbjct: 156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD--------LRTGQCSLTLSIEDGV 207
Query: 818 WKVSCRSCRECCLYTGCGDSSL 839
V+ + G D ++
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAV 229
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 9/149 (6%)
Query: 689 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 746 GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGL 805
+ + +++GS + N + D+ I F F
Sbjct: 85 --TQVYRVSDGSLVARLSDD----SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138
Query: 806 GWYGSDEIPAPSWKVSCRSCRECCLYTGC 834
G +
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIY 167
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
S +S + FS DGK LATG D+ +W + K L+ H I + + PS
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
+L + S D+TVR+WD + V ++ P I + D +R W
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 753 INNGSCTRVFKVESFCC 769
G E+
Sbjct: 234 SETGFLVERLDSENESG 250
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.3 bits (183), Expect = 5e-15
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 2/163 (1%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 733
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISD 793
N D I GEI + + + D I
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 794 SLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGD 836
N + K+ L G +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDT---------------LKSKTNLEEHSSLITD 685
+ + A D + + D + + +
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
+ FSP L T+ D + W+ ++ F + + + D+++C D
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDS-VVKIACS-DNILCLATSD 313
Query: 746 GEIRYWSI 753
+ +
Sbjct: 314 DTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 17/188 (9%), Positives = 44/188 (23%), Gaps = 3/188 (1%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 697
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 758 CTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPS 817
+ + + +++S + G+ E
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 818 WKVSCRSC 825
+++ +
Sbjct: 194 YQIRDVAL 201
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 8/124 (6%), Positives = 24/124 (19%), Gaps = 8/124 (6%)
Query: 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-------FCCWCVN 773
+ + P+ L+ DG + + + + C + N
Sbjct: 9 APKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 774 AMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833
+ + + G I + + +
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 834 CGDS 837
+
Sbjct: 128 DPRN 131
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 9e-15
Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 2/202 (0%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 753 INNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDE 812
+ S E + + + G + ++ + NI + +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 813 IPAPSWKVSCRSCRECCLYTGC 834
+ +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYS 206
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 742
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 743 DGDGEIRYWSIN 754
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLAT 697
+ + + G + + +++ + K N+ + + I V F +A
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAA 340
Query: 698 SSFDKTVRVWDAD 710
D + D
Sbjct: 341 VEKDGQSFLEILD 353
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
F+ GK + G D W T S + SS + S + T S DK
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328
Query: 703 TVRVWD 708
V++
Sbjct: 329 KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 698
S++ + G+ LA G + H + H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283
Query: 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 10/190 (5%)
Query: 645 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 704 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
V+VWD +PG S + + S P+ LI G + + T
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV---GGEASTLSIWDLAAPT 130
Query: 760 RVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK 819
K E K+ + + + + + A
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 820 VSCRSCRECC 829
+S +
Sbjct: 191 ISNDGTKLWT 200
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 6/149 (4%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 692
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
L T+ +WD P ++ + SA + SC DG I W
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 753 INNGSCTRVFKVESFCCWCVNAMNRPCLW 781
++N + R F+ + C++ N
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKL 198
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.002
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLW 665
+S V+ C S D K + TG DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 29/213 (13%), Positives = 57/213 (26%), Gaps = 18/213 (8%)
Query: 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 686
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 747 EIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLG 806
+R W I G C V CV R + D +++ D
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-FMVKVWDPET---------- 166
Query: 807 WYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839
+ + +V + +G D+S+
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI 199
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 5e-12
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
DG + +G D +W +T L H SL + + ++ L + + D
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADS 237
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
TV++WD L+T G + ++ + + + DG ++ W + G R
Sbjct: 238 TVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296
Query: 763 KV 764
Sbjct: 297 VT 298
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 2e-08
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 698
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 699 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 750
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 751 WSIN 754
+
Sbjct: 336 LDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 6e-07
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 3/125 (2%)
Query: 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
W S + GH V++ + I S D ++ WS G C R +
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 767 FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826
W + + D + + G VS
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 827 ECCLY 831
++
Sbjct: 118 TLRVW 122
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 63.9 bits (153), Expect = 1e-11
Identities = 18/160 (11%), Positives = 42/160 (26%), Gaps = 4/160 (2%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 734
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 735 KDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794
D + + D ++ V + + D A +
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834
+ + S + + ++ ++
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.9 bits (148), Expect = 6e-11
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 2/198 (1%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 696
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 757 SCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAP 816
+ + S + ++S + S
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 817 SWKVSCRSCRECCLYTGC 834
+ +
Sbjct: 191 GAFLVATDQSRKVIPYSV 208
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 2/120 (1%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KVESFCCWCVNA 774
+ GH+ ++ +L + + S D +G I W I+ G RVF V + +
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 775 MNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834
++ L+ +++ + + + S + + C
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 690 PSMPRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748
P RLAT S D +V VW+ + P + + H+ S ++ N + I S D I
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNI 292
Query: 749 RYWSI 753
++W++
Sbjct: 293 KFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 2e-05
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 700
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 701 DKTVRVWD 708
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 2e-11
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
+L+ +G D LW + LE H L+ R+ + ++D
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDG 238
Query: 703 TVRVWDADNPGYS--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751
++VWD LRT + HS V L F I S D I W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 55/247 (22%)
Query: 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 693 PRLATSSFD--------------------------------------KTVRVWDADN--P 712
+S +++ VWD +
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772
R +GH A+V +DF I S GD I+ W+ + R C+
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184
Query: 773 NAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832
+R + D I++ D + A + G V C + +
Sbjct: 185 QYRDRLVVSGSSD-NTIRLWD-IECGACLRVLEGHE---------ELVRCIRFDNKRIVS 233
Query: 833 GCGDSSL 839
G D +
Sbjct: 234 GAYDGKI 240
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 7e-07
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 6/121 (4%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
D K + + D+ +W+T T + L H I +++ + + + S D
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDN 198
Query: 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762
T+R+WD + + + I S DG+I+ W + R
Sbjct: 199 TIRLWDIECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 763 K 763
Sbjct: 255 A 255
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 692
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 693 PRLATSSFDKTVRVWD 708
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM 775
+ S V L + I S D I+ W N C R+ + C+
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 776 NRPCL 780
R +
Sbjct: 65 ERVII 69
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 2/143 (1%)
Query: 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 699
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 700 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 759 TRVFKVESFCCWCVNAMNRPCLW 781
+ +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPF 160
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 1e-09
Identities = 14/151 (9%), Positives = 32/151 (21%), Gaps = 3/151 (1%)
Query: 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 743
+ +P+ ++ + +V + + HS P+ S D
Sbjct: 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPS-GYYCASGD 77
Query: 744 GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFC 803
G +R W + + F + G+ + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 804 GLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834
G S +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 701
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 702 KTVRVWDAD 710
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEI 748
P ++A++S DKT+++W+ +T + L + S +G I
Sbjct: 248 PDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFI 305
Query: 749 RYW 751
+
Sbjct: 306 NFV 308
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.7 bits (150), Expect = 4e-11
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 688 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 748 IRYWSI 753
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 7e-10
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 11/157 (7%)
Query: 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 736 DDLIC-SCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794
+ D GS +V + V + L + GDI S
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 795 LFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY 831
L + Y + + + + +
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 155
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 4e-08
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSPSMPRLATSSFD 701
+ L+ATG D ++ L H + ++ + L +S D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278
Query: 702 KTVRVWD 708
++ W+
Sbjct: 279 ACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 3e-05
Identities = 13/123 (10%), Positives = 30/123 (24%), Gaps = 14/123 (11%)
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--------- 766
L+T GH+ + +L +P + S DG I WS ++ + S
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 60
Query: 767 FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826
+ + + +++ + +
Sbjct: 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 120
Query: 827 ECC 829
Sbjct: 121 SPG 123
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 18/144 (12%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
+ + L +G +D + + W + ++ ++HS+LI + S +
Sbjct: 13 NKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA------ 57
Query: 698 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757
+ + D + T + + + + + D D I +
Sbjct: 58 ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 758 CTRVFKVESFCCWCVNAMNRPCLW 781
+ L
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLE 138
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 9e-11
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 718
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766
+ H + +++ + L+ + G++ ++ I T+ E
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 1e-09
Identities = 22/195 (11%), Positives = 53/195 (27%), Gaps = 31/195 (15%)
Query: 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------HSSLIT 684
AN+ +A + + + D +W L ++ ++ H S +
Sbjct: 7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 685 DVRFSPSMPR-------LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 734
V ++ R +AT+SF + + + + ++ D +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 735 -----------KDDLICSCDGDGEIRYWSIN-NGSCTRVFKVESFCCWCVNAMNRPCLWD 782
+ + D G W + + + + +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183
Query: 783 KLDAGDIQISDSLFI 797
A + IS+ I
Sbjct: 184 SQFATSVDISERGLI 198
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 16/195 (8%)
Query: 589 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648
L+ G + V+ + S + SV+ S +
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 649 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702
++ + T + ++ HSS + + F+ S L ++ +D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 703 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
+R WD + T H + L + G ++++ S
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLKKGWRSG 368
Query: 759 TRVFKVESFCCWCVN 773
ES CC C++
Sbjct: 369 MGADLNESLCCVCLD 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 23/156 (14%)
Query: 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH------TDTLKSKTNLEEHSSL 682
S + S G L+ATG ++ + +S+ ++ +S+
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 683 ITDVRFSPSMPRLATSSFDKTVRVW---------------DADNPGYSLRTFMGHSASVM 727
I V+FSP LA + + + + HS+ VM
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763
SL F+ + + L + DG++R+W +
Sbjct: 294 SLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLN 328
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 607 HDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666
+ G S + + A +S V+ F+ G+ L + G D K W
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 667 TDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 722
T + T L H + LA V+D R+ MG
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA 371
Query: 723 SASVMSLDFHPNKDDLICSCDGDGEIRYW 751
+ ++ +C D IR++
Sbjct: 372 -----------DLNESLCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 59.5 bits (142), Expect = 6e-10
Identities = 16/170 (9%), Positives = 38/170 (22%), Gaps = 17/170 (10%)
Query: 604 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 662
+LS+ DP D + + G +D
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 663 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715
+ + + LE + + + + +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765
R ++ L + + DG+I + + R + +
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 20/195 (10%), Positives = 40/195 (20%), Gaps = 5/195 (2%)
Query: 646 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 765 E-SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCR 823
E + ++ +R + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 824 SCRECCLYTGCGDSS 838
LY S
Sbjct: 187 DADSKNLYYLSYRSL 201
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 11/156 (7%), Positives = 31/156 (19%), Gaps = 6/156 (3%)
Query: 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 746 GE-IRYWSINNGSCTRVFKVES--FCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIF 802
G+ + + G + + F + + ++
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 803 CGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSS 838
I S ++ + G +
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 2e-09
Identities = 21/210 (10%), Positives = 44/210 (20%), Gaps = 14/210 (6%)
Query: 639 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 693
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 694 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 744
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 745 DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCG 804
D + S ++G+ S + + D +
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 805 LGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834
+ + S S
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 751
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 752 SI 753
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (114), Expect = 2e-06
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSS 699
D + AT G D +W T K + + + R+ + S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 700 FDKTVRVWD 708
D T+ ++
Sbjct: 316 LDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 7e-06
Identities = 26/214 (12%), Positives = 58/214 (27%), Gaps = 13/214 (6%)
Query: 638 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 687
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 688 FSPSMPRLA--TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745
+ RL D D+ GHS + + ++ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSL-GEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 746 GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGL 805
G + ++ + + V + + + L
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 806 GWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSL 839
+ D+ P + T D+++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 275
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 1e-08
Identities = 16/108 (14%), Positives = 43/108 (39%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
I +T++ +E ++ Q + + Q++ +Q Q+ Q+ +Q ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ LL+ + Q+ +Q ++ Q + + + Q Q +
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 1e-08
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
++ + E ++ R + + Q + + Q++++Q +Q+++ Q+ Q+ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ--MMEQKERSYQEHLKQLTE 250
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q ++ ++ + Q+Q+Q ++ Q++ + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 2e-08
Identities = 12/88 (13%), Positives = 39/88 (44%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ + + Q + + Q++ + ++ Q+ +Q +M+ +Q +Q++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q+Q+Q ++ Q+ + + Q +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 7e-08
Identities = 13/118 (11%), Positives = 46/118 (38%)
Query: 56 WSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ 115
+ + T+ + + I+ + + Q + + Q+ + +Q+
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ Q+ + +++ R ++Q + + Q+Q+Q + Q++ + + +D
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 5e-07
Identities = 14/102 (13%), Positives = 45/102 (44%)
Query: 54 EWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ 113
+ + I K AS ++ + +Q +Q+++ Q+ +Q +++ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q ++Q++ L ++ ++ ++ Q + + + + Q Q
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 3e-08
Identities = 9/143 (6%), Positives = 31/143 (21%), Gaps = 7/143 (4%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 703
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 704 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 759 TRVFKVESFCCWCVNAMNRPCLW 781
VF
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQ 146
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.8 bits (112), Expect = 3e-06
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 697
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 698 SSFDKTVRVWDAD 710
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 4e-06
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 5/125 (4%)
Query: 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 699
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 700 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
+ + +D ++ + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 760 RVFKV 764
+ K+
Sbjct: 327 KNIKL 331
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.6 bits (127), Expect = 5e-08
Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)
Query: 529 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 588
P GT + + +
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 589 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 645
+ + + P + + G+ V +
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 703
+ V+ T + E I + S L A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734
+ + DA++ G LR+ +
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 15/139 (10%), Positives = 28/139 (20%), Gaps = 21/139 (15%)
Query: 646 FSSDGKLLATGGHDKKAVLWH--TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
+S L + K + K +E + + P +
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261
Query: 704 V------------------RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 744
V D + S++ + K L G
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 745 DGEIRYWSINNGSCTRVFK 763
D + +G R
Sbjct: 322 DKTLYIHDAESGEELRSVN 340
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.002
Identities = 10/157 (6%), Positives = 35/157 (22%), Gaps = 24/157 (15%)
Query: 646 FSSDGKLL-----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700
+ D + + A + + + + ++ + + + +A +S
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHAST 66
Query: 701 ----------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN------KDDLICSCDG 744
V V+D A + +P +
Sbjct: 67 VFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 125
Query: 745 DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLW 781
++ ++ C+ + +
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 50.2 bits (119), Expect = 7e-07
Identities = 16/124 (12%), Positives = 29/124 (23%), Gaps = 7/124 (5%)
Query: 646 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 704 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 760 RVFK 763
++
Sbjct: 145 KIQS 148
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (89), Expect = 0.003
Identities = 18/193 (9%), Positives = 46/193 (23%), Gaps = 20/193 (10%)
Query: 641 VICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-----------VRF 688
+ K A + V+ +TL+ K + +
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170
Query: 689 SPSMPRLATSSFD-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747
S P + + + + D + T + + + I + + +
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230
Query: 748 IRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGW 807
+ G + N + G + + + + L
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGAN----FVHPTFGPVWATSHM---GDDSVALIG 283
Query: 808 YGSDEIPAPSWKV 820
+ P +WK+
Sbjct: 284 TDPEGHPDNAWKI 296
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 49.8 bits (117), Expect = 8e-07
Identities = 16/144 (11%), Positives = 37/144 (25%), Gaps = 6/144 (4%)
Query: 697 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 756 GSCTRVFKVESF-----CCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGS 810
F ES + + +AG++ ++ +
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128
Query: 811 DEIPAPSWKVSCRSCRECCLYTGC 834
A +
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRI 152
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 16/154 (10%), Positives = 33/154 (21%), Gaps = 19/154 (12%)
Query: 646 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 704 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC- 758
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 759 -----------TRVFKVESFCCWCVNAMNRPCLW 781
T+ + E + + P
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 6/143 (4%)
Query: 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSMPRLATSSF 700
S+ G+ L G D + + + E S+ + ++
Sbjct: 69 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 128
Query: 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCT 759
+ +V + +HP + I + E G
Sbjct: 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188
Query: 760 RVFKVESFCCWCVNAMNRPCLWD 782
V + + P L D
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLAD 211
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 47.6 bits (113), Expect = 2e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-----------------QQQQLQMQQ 129
E ++ QQQ ++ + QQ Q HQ+ + + + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 130 ILLQRHAQQQQQ-----------HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+L + Q +H + QQQQQ ++Q Q QQQ +G +L
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVL 199
Query: 179 NG 180
+G
Sbjct: 200 SG 201
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 62 IFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
I + T+ ++++ + L + + + QQQQQQ+ +Q HQQQ+++
Sbjct: 138 ISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 11/100 (11%), Positives = 21/100 (21%), Gaps = 2/100 (2%)
Query: 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689
E V + + G + + S + V S
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVS 288
Query: 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729
+ + +DA+ + MSL
Sbjct: 289 TDGSTVWLGGALGDLAAYDAET-LEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 8/119 (6%), Positives = 23/119 (19%), Gaps = 3/119 (2%)
Query: 695 LATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752
+ + + V D + + + M P + + +
Sbjct: 4 ILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 753 INNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD 811
+ G + + + D + L + D
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), proglycinin [TaxId: 3847]
Score = 39.5 bits (92), Expect = 8e-04
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQ-------------------QQQQQLQMQQILLQ 133
++ QQ QQ+ QS +P + Q+ + + I+
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT 140
Query: 134 RHAQQQQQHQQQ--------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
+ Q + Q+ + QQ+ Q+ QQ++ +G +L+G
Sbjct: 141 NSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG 195
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.001
Identities = 11/214 (5%), Positives = 44/214 (20%), Gaps = 20/214 (9%)
Query: 534 PSTHTPGDVISMPALPHSGTTSKP-LMMFGTDGAG---TLTSPSNQLWDDKDLELRADMD 589
+ + + H + + + L + A
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212
Query: 590 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFS 647
+ + + D G + E + ++
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272
Query: 648 SDGKLLATGGHDKKAV---------LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--A 696
+ + + ++ + + + + A
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA 331
Query: 697 TSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSL 729
S+ + + ++DA + + + +S+
Sbjct: 332 NSAGTEVLDIYDAAS-DQDQSSVELDKGPESLSV 364
|
| >d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: Double-stranded DNA-binding domain family: Double-stranded DNA-binding domain domain: Programmed cell death protein 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 0.002
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R Q+ + Q + Q Q+ + ++ + + + Q+L Q
Sbjct: 2 RRQRLAELQAKHGDPGDAAQ------QEAKHREAEMRNSILAQVLDQ 42
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (88), Expect = 0.002
Identities = 12/87 (13%), Positives = 32/87 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
IK+ E Q + + + Q ++ + Q+Q+Q + + +R +
Sbjct: 23 HEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKI 82
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ + + Q + + + +QQ
Sbjct: 83 IELLNVTELTQNALINDELVEWKRRQQ 109
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (88), Expect = 0.002
Identities = 10/84 (11%), Positives = 32/84 (38%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ + Q + + + Q + + + Q+Q+Q L+ ++L ++ +
Sbjct: 26 KSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIEL 85
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q + + +++QQ
Sbjct: 86 LNVTELTQNALINDELVEWKRRQQ 109
|
| >d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 144 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: PABP domain-like superfamily: PABC (PABP) domain family: PABC (PABP) domain domain: poly(A) binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (83), Expect = 0.004
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
P ++ + QQ +AQ Q QQ Q Q+
Sbjct: 7 AAATPAVRTVPQYKYAAGVRNPQQH---------LNAQPQVTMQQPAVHVQGQEPLTASM 57
Query: 160 PQQQQPQQQQQ 170
PQ+Q+Q
Sbjct: 58 LASAPPQEQKQ 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 847 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.89 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.89 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.89 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.88 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.8 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.68 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.68 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.67 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.63 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.6 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.53 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.51 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.3 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.24 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.22 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.13 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.83 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.79 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.64 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.56 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.46 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.41 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.4 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.19 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.15 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.08 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.91 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.87 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.81 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.63 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.61 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.51 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.5 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.49 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.37 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.53 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.51 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.41 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.22 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.17 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.82 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.66 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.27 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.14 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.0 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.7 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.73 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.69 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.48 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.46 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.7 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.3 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.75 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.4 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 88.32 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.75 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 84.22 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 82.31 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 82.12 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.4e-28 Score=262.24 Aligned_cols=281 Identities=13% Similarity=0.155 Sum_probs=221.7
Q ss_pred CCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEecc
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~~ 623 (847)
.|...+.+++|++||+++++++.. +|||+.+......+.... ...++..|. +.+++++ +++.|+.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~-~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD-CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEE-CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEee-ecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 345678899999999999987644 899998765544333222 223344443 3455565 67889999999988
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. ..+....+..|...|.+++|++++.+|++++.|+.|++||+.+++....+..|...|++++|++++..+++++.|+.
T Consensus 128 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 128 AP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 65 45667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEE
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWD 782 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 782 (847)
|++||+++ +..+..+ .|...|++++|+|++. +|++++.|+.|++||+++++.. ....|...|.++.+.. ...+++
T Consensus 207 v~i~d~~~-~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s 282 (337)
T d1gxra_ 207 VRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEETTT-TEEEEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred cccccccc-ceeeccc-ccccceEEEEEccccc-ccceeccccccccccccccccc-cccccccccceEEECCCCCEEEE
Confidence 99999998 6666665 4888999999999987 5568999999999999988765 4556777888888764 457888
Q ss_pred EcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 783 KLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 783 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
++.++.|++|+....... .... +...+.. +.+.+ ++.+|++|+.||+|+||++-|
T Consensus 283 ~s~Dg~i~iwd~~~~~~~--~~~~--~~~~v~~----~~~s~-d~~~l~t~s~D~~I~vWdl~~ 337 (337)
T d1gxra_ 283 TGKDNLLNAWRTPYGASI--FQSK--ESSSVLS----CDISV-DDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EETTSEEEEEETTTCCEE--EEEE--CSSCEEE----EEECT-TSCEEEEEETTSCEEEEEEEC
T ss_pred EeCCCeEEEEECCCCCEE--EEcc--CCCCEEE----EEEeC-CCCEEEEEeCCCeEEEEEEEC
Confidence 999999999996643322 1211 2223333 33334 678999999999999999865
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.6e-28 Score=264.51 Aligned_cols=283 Identities=17% Similarity=0.151 Sum_probs=216.9
Q ss_pred cccCCCCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEE
Q 003106 546 PALPHSGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGR 618 (847)
Q Consensus 546 ~~~~~~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~ 618 (847)
+.+|.........++++|+|..++..... .+||+.++.....+ .+ +...|.+. +++++ +++.|++|+
T Consensus 10 ~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~-----~~-H~~~v~~~~~sp~g~~latg~~dg~i~ 83 (311)
T d1nr0a1 10 PSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIY-----TE-HSHQTTVAKTSPSGYYCASGDVHGNVR 83 (311)
T ss_dssp CCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEE-----CC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEE-----cC-CCCCEEEEEEeCCCCeEeccccCceEe
Confidence 34444444445577899999988775543 78999887655432 11 33344443 56666 788999999
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE-E
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-L 695 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~-L 695 (847)
+||+.++ .......+..|...|.+++|++++++|++++. ++.++||++++++.+.++.+|...|++|+|+|++++ |
T Consensus 84 iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l 162 (311)
T d1nr0a1 84 IWDTTQT-THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 162 (311)
T ss_dssp EEESSST-TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred eeeeecc-ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence 9999987 33344568899999999999999999999986 456999999999999999999999999999999885 7
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe-------eCCce
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------VESFC 768 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-------~~~~~ 768 (847)
++|+.|++|++||+++ ...+..+.+|...|+++.|+|++. +|++++.|+.|++||++++..+..+. +|...
T Consensus 163 ~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~ 240 (311)
T d1nr0a1 163 ISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240 (311)
T ss_dssp EEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred cccccccccccccccc-cccccccccccccccccccCcccc-cccccccccccccccccccccccccccccccccccccc
Confidence 8899999999999998 788888999999999999999987 56699999999999999998888775 35667
Q ss_pred EEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 769 CWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 769 v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
|.++.+. +...+++++.++.|++||..... ........ ......... +.. .+..|++++.||.|++|+.
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~--~~~~l~~~--~~~~~~~~~--~~~-~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNVATLK--VEKTIPVG--TRIEDQQLG--IIW-TKQALVSISANGFINFVNP 310 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECC--SSGGGCEEE--EEE-CSSCEEEEETTCCEEEEET
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCc--EEEEEECC--CCccceEEE--EEe-cCCEEEEEECCCEEEEEeC
Confidence 8888876 45678889999999999965332 22221111 111111111 111 3557999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=7.9e-27 Score=256.83 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=187.3
Q ss_pred CcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEe-eecCC----CCCCCCcEEEEeccCCc
Q 003106 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~d~----t~~~d~~v~vwd~~~~~ 626 (847)
++.+++|+|||+.+++++.+ +|||..+++.... ..+ ..+.+.|... +++++ +++.|+.|++||+.++
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~-~~l---~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~- 83 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV-HEL---KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR- 83 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE-EEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE-EEe---cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-
Confidence 47899999999999876554 7999977653221 111 1234445443 45555 6788999999999887
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
.++....+.+|...|++++|+|++++|++|+.|++|++|+++.... ......|...|++++|+|++++|++|+.|+
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~ 163 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence 6667777889999999999999999999999999999999876543 233457899999999999999999999999
Q ss_pred cEEEEECCCC-----------------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 703 TVRVWDADNP-----------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 703 ~V~iWD~~~~-----------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
+|++||+... +..+....+|...|++++|+|++. +|++++.|+.|++||++++.++..+..+
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 242 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASE 242 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeecc
Confidence 9999998642 234566778999999999999987 5669999999999999999999999999
Q ss_pred CceEEEEEecCCCEEEEEcCCCcEEEEc
Q 003106 766 SFCCWCVNAMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 766 ~~~v~~~~~~~~~~l~~~~~~g~i~i~d 793 (847)
...|.++.+..+..+++...++.+.+|.
T Consensus 243 ~~~v~s~~fs~d~~~la~g~d~~~~~~~ 270 (371)
T d1k8kc_ 243 TLPLLAVTFITESSLVAAGHDCFPVLFT 270 (371)
T ss_dssp SCCEEEEEEEETTEEEEEETTSSCEEEE
T ss_pred cccceeeeecCCCCEEEEEcCCceEEEE
Confidence 9999999887777777666677655544
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=8.4e-27 Score=250.94 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=184.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEccCCCCeEEEEEcCC
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~h~~~I~~v~fsp~ 691 (847)
++.+.+||+.+. .....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+.+.+ ..+..|...|.+|+|+|+
T Consensus 37 ~~~v~i~~~~~~---~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d 113 (311)
T d1nr0a1 37 GTSVYTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113 (311)
T ss_dssp TTEEEEEETTCS---SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CCEEEEEECCCC---ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccc
Confidence 456899999865 455667899999999999999999999999999999999876543 567889999999999999
Q ss_pred CCEEEEEeC--CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceE
Q 003106 692 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 692 ~~~Lasgs~--Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v 769 (847)
+++|++++. +..++|||+++ +..+.++.+|...|++|+|+|+++.+|++|+.|+.|++||+++++++..+..|...|
T Consensus 114 ~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i 192 (311)
T d1nr0a1 114 SKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192 (311)
T ss_dssp SCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccceeeecccccccccccccccccccccccccccccc
Confidence 999999885 46699999998 677888899999999999999999888899999999999999999999999999999
Q ss_pred EEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 770 WCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 770 ~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.++.+.+ ...++++..++.+.+|+.......................++.+.+.+ ++.+|++|+.||+|+||++.+
T Consensus 193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred cccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCC
Confidence 9998874 456778889999999996643322211111111111112233344334 678999999999999999865
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4.8e-26 Score=239.17 Aligned_cols=274 Identities=15% Similarity=0.213 Sum_probs=220.0
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC----CCCCCCcEEEEecc
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD----TDPRDAGGRGMDVS 623 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~----t~~~d~~v~vwd~~ 623 (847)
|...+..++|+|+|.++++++.+ +|||+.+++....+.. +...|.. .+.+++ .+..++.+.+|+..
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~------h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG------HTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC------CSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC------CCCcEEEEeeeccccccccccccccccccccc
Confidence 55678999999999999887654 8999998877654421 2222332 233333 45566777888887
Q ss_pred CCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 624 ~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
.. +....+.+|...+.++.|+++++.|++++.|+.+++||+++++.+..+.+|...+.+++|++++++|++++.|+.
T Consensus 90 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 166 (317)
T d1vyhc1 90 GF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166 (317)
T ss_dssp SS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cc---ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence 55 556667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCC-------------------eEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------------------DLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~-------------------~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
|++||+++ ...+..+.+|...|.++.|++++. .++++++.|+.|++||+++++++..+.+
T Consensus 167 v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 245 (317)
T d1vyhc1 167 VRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245 (317)
T ss_dssp EEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence 99999998 778889999999999999987643 3577999999999999999999999999
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
|...+.++.+.. ...++++..+|.|++||...... +..+. .+...++...|+ + ++.+|++|+.||+|+|||
T Consensus 246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~h~~~V~~~~~s----~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLN-AHEHFVTSLDFH----K-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC--CEEEE-CCSSCEEEEEEC----S-SSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEc----C-CCCEEEEEeCCCeEEEeC
Confidence 999999888764 45678899999999999654322 11111 122333433343 3 577899999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-25 Score=246.49 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=207.7
Q ss_pred CCCCCcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccc------------cccCCCCCceEE-eeecCC----CC
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRL------------VEDGSLDDNVES-FLSHDD----TD 611 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~------------~~~g~~d~~v~~-~~s~d~----t~ 611 (847)
.|...+.+++|++||++++++++. +|||+.+++....+... ......+..|.. .+++++ ++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 466788999999999998886533 89999988765443211 111122333432 344554 68
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
+.|+.|++||...+ +.+..+.+|...|.+++|++++..+++|+.|+.|++||+.+.........+...+..+.+.++
T Consensus 140 ~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
T d1erja_ 140 AEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216 (388)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred cccccccccccccc---ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence 89999999999876 667778899999999999999999999999999999999998888777666555544444557
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-------
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------- 757 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~------- 757 (847)
+++|++|+.|+.|++||+++ +..+..+ .+|...|++|+|+|++. +|++++.||.|++||++++.
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp CCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC-----------
T ss_pred CCeEEEEcCCCeEEEeeccc-CccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCcccccccc
Confidence 88999999999999999998 4444443 46889999999999987 55699999999999998653
Q ss_pred -----eEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccc--cccccCCCcE
Q 003106 758 -----CTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWK--VSCRSCRECC 829 (847)
Q Consensus 758 -----~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~ 829 (847)
+...+..|...+.++.+.. ...+++++.+|.|++||...... ...+.. +...+....|. ..+. +++.+
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~l~~-H~~~V~~~~~~~~~~~s-pd~~~ 370 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQG-HRNSVISVAVANGSSLG-PEYNV 370 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--EEEEEC-CSSCEEEEEECSSCTTC-TTCEE
T ss_pred ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEeC-CCCCEEEEEEecCcccC-CCCCE
Confidence 3344556677788887764 45788999999999999764322 211111 22223222221 1122 36789
Q ss_pred EEEEeCCCeEEEEEcc
Q 003106 830 LYTGCGDSSLSSFIAG 845 (847)
Q Consensus 830 l~sGs~DG~V~vW~~g 845 (847)
|+||+.||+|+||++.
T Consensus 371 l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 371 FATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeee
Confidence 9999999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.4e-25 Score=238.38 Aligned_cols=280 Identities=11% Similarity=0.083 Sum_probs=200.9
Q ss_pred cceEEEecCCCeEeecCCC----eEEeCCCCchhhccccccccCCCCCceEEe-eec--CC----CCCCCCcEEEEeccC
Q 003106 556 KPLMMFGTDGAGTLTSPSN----QLWDDKDLELRADMDRLVEDGSLDDNVESF-LSH--DD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~----~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~-~s~--d~----t~~~d~~v~vwd~~~ 624 (847)
...+.|+++|..++.+... +.||......... .. ..+.....+.+. +++ ++ +++.|++|++||+..
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~-~~--~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV-VQ--FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE-EE--ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccce-EE--EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3567899999988775544 3344433322111 11 112222233332 332 32 678899999999876
Q ss_pred Ccee-----eEeEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCE-EE
Q 003106 625 GFSF-----KEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LA 696 (847)
Q Consensus 625 ~~~~-----~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~-La 696 (847)
+... .....+..|.+.|.+++|++++++|++++. |+.+++|+.++++.+..+.+|...|++++|+|++.+ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence 5322 223346789999999999999999988765 678999999999999999999999999999999875 67
Q ss_pred EEeCCCcEEEEECCCCCceEEEe---ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce----E
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC----C 769 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~----v 769 (847)
+++.|+.|++||++. ......+ .+|...|++++|+|++..+|++++.|+.|++||+++++++..+..|... +
T Consensus 177 ~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 177 TVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred Eeecccccccccccc-cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence 899999999999987 4444443 4577889999999987778889999999999999999999999877654 4
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
+++.+.+...+++++.++.|++||...... ...... +........ +.+......+|++|+.||+|+|||+
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~--~~~~~~-~~~~~~~~~--~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKC--VQKWTL-DKQQLGNQQ--VGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEE--EEEEEC-CTTCGGGCE--EEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCE--EEEEEe-cCCcccCeE--EEEEECCCCEEEEEECCCEEEEEEC
Confidence 555556677889999999999999764322 221111 111111111 1222224568999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=2.8e-25 Score=235.00 Aligned_cols=280 Identities=13% Similarity=0.071 Sum_probs=203.0
Q ss_pred CCCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC---CCCCCCcEEEEec
Q 003106 550 HSGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD---TDPRDAGGRGMDV 622 (847)
Q Consensus 550 ~~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~---t~~~d~~v~vwd~ 622 (847)
..|...+.+++|+|||+++++++.+ ++||+.+++....+. ..+...|. +.+.+++ +++.|+.+++|++
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~ 83 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-----DVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 83 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-----CSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----CCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence 4466788999999999999887654 899999876554321 11233333 3344554 5677999999998
Q ss_pred cCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (847)
Q Consensus 623 ~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg 702 (847)
..............|...+.+++|+++++++++++ ++.|++|+.. +..... ....+.+++|+|++++|++|+.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCccccccccccccccccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccccccc
Confidence 76533333344556888999999999999887765 5689999954 233333 344688999999999999999999
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEE---EEeeCCceEEEEEec-CCC
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKVESFCCWCVNAM-NRP 778 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~---~~~~~~~~v~~~~~~-~~~ 778 (847)
.|++||+++..........|...|++++|+|++. +|++++.|+.|++||+.++..+. .+..|...|.++.+. ...
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999873222334557899999999999987 55689999999999998876543 455678889998876 445
Q ss_pred EEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 779 CLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+++++.++.|++|+...................+....|. ++.+|++|+.||+|++|++-|
T Consensus 238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL------NETTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE------ETTEEEEEETTSCEEEEECCC
T ss_pred ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC------CCCEEEEEeCCCEEEEEeccC
Confidence 78889999999999966443322222222222233333332 467899999999999999854
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-23 Score=227.48 Aligned_cols=230 Identities=14% Similarity=0.191 Sum_probs=183.2
Q ss_pred eeecCC----CCCCCCcEEEEeccCCceeeEe--EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEE
Q 003106 604 FLSHDD----TDPRDAGGRGMDVSQGFSFKEA--NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTN 675 (847)
Q Consensus 604 ~~s~d~----t~~~d~~v~vwd~~~~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--~~~~~~ 675 (847)
-+++++ ++ .|+.|++||+.++.....+ ....+|.+.|++|+|+||+++|++|+.||+|+|||+.. .+....
T Consensus 58 ~fs~~g~~latg-~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 136 (337)
T d1gxra_ 58 TISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp EECSSSSEEEEE-CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred EECCCCCEEEEE-ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccc
Confidence 345555 44 3889999999876433333 33458999999999999999999999999999999874 456677
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
+..|...|.+++|+|++.+|++++.|+.|++||+++ +.+.....+|...|++++|++++. ++++++.|+.|++||+++
T Consensus 137 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~ 214 (337)
T d1gxra_ 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-cccccccccccccccccc
Confidence 889999999999999999999999999999999998 778888889999999999999987 455889999999999999
Q ss_pred CceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEe
Q 003106 756 GSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 756 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
++.+..+. +...+.++.+. ....+.++..++.+.+|+...... .... .+...+....| .+ ++.+|++|+
T Consensus 215 ~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~--~~~~~i~~v~~----s~-~g~~l~s~s 284 (337)
T d1gxra_ 215 GRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLH--LHESCVLSLKF----AY-CGKWFVSTG 284 (337)
T ss_dssp TEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEEC--CCSSCEEEEEE----CT-TSSEEEEEE
T ss_pred ceeecccc-cccceEEEEEcccccccceecccccccccccccccc--cccc--ccccccceEEE----CC-CCCEEEEEe
Confidence 99888775 45567777765 455778889999999999764332 2111 12223333333 34 578999999
Q ss_pred CCCeEEEEEccC
Q 003106 835 GDSSLSSFIAGT 846 (847)
Q Consensus 835 ~DG~V~vW~~gt 846 (847)
.||+|++|++.+
T Consensus 285 ~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 285 KDNLLNAWRTPY 296 (337)
T ss_dssp TTSEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 999999999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=3.9e-23 Score=220.30 Aligned_cols=235 Identities=17% Similarity=0.188 Sum_probs=184.9
Q ss_pred CCCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceE-EeeecCC----CCCCCCcEEEEec
Q 003106 551 SGTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDD----TDPRDAGGRGMDV 622 (847)
Q Consensus 551 ~~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~-~~~s~d~----t~~~d~~v~vwd~ 622 (847)
.|...+..++|+|||.++++++.+ +|||+.+++....+.. +...|. +.+.+++ +++.|+.+++|+.
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL------RSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC------SCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec------ccccEEeeEeeccceeeeeecccceeecccc
Confidence 456678999999999999887665 8999998876544321 111122 2223333 3455666666664
Q ss_pred cCCc------------------------------------------eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 003106 623 SQGF------------------------------------------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDK 660 (847)
Q Consensus 623 ~~~~------------------------------------------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 660 (847)
.... ..........+...|.++.+.+++.++++|+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 206 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence 4321 0112223344667788889999999999999999
Q ss_pred cEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe--ccCCCCeEEEEEecCCCeE
Q 003106 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 661 ~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~--~~h~~~V~sl~fsp~g~~l 738 (847)
.|++||+++++.+.++.+|...|++|+|+|++++|++|+.||+|++||++. ...+..+ ..+...|.+++|+|++. +
T Consensus 207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~ 284 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNIICGITSVSFSKSGR-L 284 (340)
T ss_dssp EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECSSSC-E
T ss_pred eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc-cccccccccccccCceEEEEECCCCC-E
Confidence 999999999999999999999999999999999999999999999999997 5555554 45667899999999987 5
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEc
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISD 793 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d 793 (847)
|++|+.||.|+|||+.+++++..+.+|...|.++.+.. ...+++++.||.|++||
T Consensus 285 l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 66999999999999999999999999999999998875 45788899999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=6.9e-23 Score=218.35 Aligned_cols=213 Identities=18% Similarity=0.275 Sum_probs=169.5
Q ss_pred eeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 627 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
.++..+++++|.+.|+||+|+|++++||||+.||+|+|||+.+++.+..+..|...|++|+|+|++++|++|+.|+.|++
T Consensus 44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCc---eEEEe-----------------------------------------ccCCCCeEEEEEecCCCeEEEEE
Q 003106 707 WDADNPGY---SLRTF-----------------------------------------MGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 707 WD~~~~~~---~~~~~-----------------------------------------~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
|+...... ....+ ..+...+..+.+.+.+. +++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-eeEEe
Confidence 99765211 11111 12344566777777765 66799
Q ss_pred eCCCcEEEEECCCCceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccc
Q 003106 743 DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVS 821 (847)
Q Consensus 743 s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 821 (847)
+.|+.|++||+++++++..+..|...|.++.+.. ...+++++.++.|++|+........... .......+....|
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--- 278 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSF--- 278 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEE---
T ss_pred ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc-cccccCceEEEEE---
Confidence 9999999999999999999999999999998764 4578889999999999976433222211 1112222333333
Q ss_pred cccCCCcEEEEEeCCCeEEEEEccC
Q 003106 822 CRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 822 ~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+ ++.+|++|+.||.|+||++.+
T Consensus 279 -s~-~~~~l~~g~~dg~i~iwd~~~ 301 (340)
T d1tbga_ 279 -SK-SGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp -CS-SSCEEEEEETTSCEEEEETTT
T ss_pred -CC-CCCEEEEEECCCEEEEEECCC
Confidence 33 678999999999999999854
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=4.7e-23 Score=226.31 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=172.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEccCCCCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~h~~~I~~v~ 687 (847)
+++.++.|++||+.++ .+..+..+++|.+.|++|+|+|++++|++|+.|++|+|||++++... ..+.+|...|++++
T Consensus 24 ~~~~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~ 102 (371)
T d1k8kc_ 24 ICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102 (371)
T ss_dssp EECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred EEeCCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccc
Confidence 5677899999999887 67788889999999999999999999999999999999999876543 44568889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCc---eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--------
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------- 756 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-------- 756 (847)
|+|+++.|++|+.|++|++|+++.... .......|...|++++|+|++. +|++|+.|++|++||+...
T Consensus 103 ~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~ 181 (371)
T d1k8kc_ 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAP 181 (371)
T ss_dssp ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred cccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCcEEEEEeeccCcccccccc
Confidence 999999999999999999999876332 2334567899999999999987 5679999999999998643
Q ss_pred ----------ceEEEEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 757 ----------SCTRVFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 757 ----------~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
..+.....+...+.++.+.. ...++.++.++.|.+||...... ..... .+...+....|. +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~v~s~~fs----~- 253 (371)
T d1k8kc_ 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA--VATLA-SETLPLLAVTFI----T- 253 (371)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE--EEEEE-CSSCCEEEEEEE----E-
T ss_pred ccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc--eeeee-cccccceeeeec----C-
Confidence 34556667778888888764 46788889999999999653322 11111 122233333343 3
Q ss_pred CCcEEEEEeCCCeEEEEEc
Q 003106 826 RECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~ 844 (847)
++.+|++ +.|+.+++|..
T Consensus 254 d~~~la~-g~d~~~~~~~~ 271 (371)
T d1k8kc_ 254 ESSLVAA-GHDCFPVLFTY 271 (371)
T ss_dssp TTEEEEE-ETTSSCEEEEE
T ss_pred CCCEEEE-EcCCceEEEEe
Confidence 4555555 55777777654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.1e-23 Score=233.38 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=128.9
Q ss_pred CCCCCcEEEEeccCCc------------ee---eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 003106 611 DPRDAGGRGMDVSQGF------------SF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~------------~~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 675 (847)
++.|+.+++|++.... .. ........+...++|++|+||+ +||+|+.||+|+|||+.+++.+..
T Consensus 142 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~ 220 (393)
T d1sq9a_ 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 220 (393)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred EcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc
Confidence 3457889999875321 11 1122234566779999999997 899999999999999999887765
Q ss_pred E------ccCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCCCceEEEe-------------ccCCCCeEEEEEec
Q 003106 676 L------EEHSSLITDVRFSPSMPRLATSSFDKT---VRVWDADNPGYSLRTF-------------MGHSASVMSLDFHP 733 (847)
Q Consensus 676 l------~~h~~~I~~v~fsp~~~~Lasgs~Dg~---V~iWD~~~~~~~~~~~-------------~~h~~~V~sl~fsp 733 (847)
+ .+|...|++|+|+|++++|++|+.|++ |+|||+++ +..+.++ .+|...|++|+|+|
T Consensus 221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp 299 (393)
T d1sq9a_ 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299 (393)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred cccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCC
Confidence 4 468999999999999999999999875 99999998 6666555 37999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE
Q 003106 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW 770 (847)
Q Consensus 734 ~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~ 770 (847)
+++ +|+||+.|++|+|||+++++++.++++|...|.
T Consensus 300 d~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 300 SGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp SSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred CCC-eeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 987 667999999999999999999999999987764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1e-22 Score=213.47 Aligned_cols=232 Identities=22% Similarity=0.375 Sum_probs=192.6
Q ss_pred CCCCcceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccC
Q 003106 552 GTTSKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 624 (847)
Q Consensus 552 ~~~~~~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~ 624 (847)
+...+..++|++++..++..... .+|+.........+.. .........+..++ ++..|+.+++||+.+
T Consensus 58 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 132 (317)
T d1vyhc1 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-----HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132 (317)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-----CSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCcEEEEeeeccccccccccccccccccccccccccccccc-----ccccceeeeccCCCceEEeeccCcceeEeeccc
Confidence 34567889999999988776544 6777766554332211 11111222333333 567899999999997
Q ss_pred CceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC-------------
Q 003106 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------------- 691 (847)
Q Consensus 625 ~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~------------- 691 (847)
+ +.+..+.+|...+.+++|++++++|++|+.|+.|++|++.+++.+..+.+|...|.++.|+++
T Consensus 133 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 209 (317)
T d1vyhc1 133 G---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209 (317)
T ss_dssp C---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred c---eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence 7 567778899999999999999999999999999999999999999999999999999999874
Q ss_pred -------CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee
Q 003106 692 -------MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 692 -------~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~ 764 (847)
+..+++++.|+.|++||+++ +.++.++.+|...|.+++|+|++. +|++|+.||.|+|||+++++++.++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 210 TKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp -------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred eeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcC
Confidence 34689999999999999998 788999999999999999999987 556999999999999999999999999
Q ss_pred CCceEEEEEecC-CCEEEEEcCCCcEEEEc
Q 003106 765 ESFCCWCVNAMN-RPCLWDKLDAGDIQISD 793 (847)
Q Consensus 765 ~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d 793 (847)
|...|.++.+.. ...+++++.||.|++||
T Consensus 288 h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999998764 45788999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.1e-22 Score=222.39 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=172.6
Q ss_pred CCCcEEEEeccCCceee-EeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc--------------
Q 003106 613 RDAGGRGMDVSQGFSFK-EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------------- 677 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-------------- 677 (847)
.++...+|+......+. .+....+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T d1erja_ 36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114 (388)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccc
Confidence 34556677765442222 2333447999999999999999999987 8999999999988877664
Q ss_pred ----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 678 ----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 678 ----~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
.|...|++|+|+|++++|++|+.||+|++||... +..+..+.+|...|.+++|++++.. +++++.++.|++||+
T Consensus 115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDL 192 (388)
T ss_dssp ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET
T ss_pred ccccCCCCCEEEEEECCCCCcceecccccccccccccc-ccccccccccccccccccccccccc-ccccccceeeeeeec
Confidence 3566799999999999999999999999999998 7888889999999999999999774 558899999999999
Q ss_pred CCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEE
Q 003106 754 NNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYT 832 (847)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~s 832 (847)
++..++.....+...+.+.... +...++++..++.|.+|+.......................++.+.+.+ ++.+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s 271 (388)
T d1erja_ 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 271 (388)
T ss_dssp TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEE
T ss_pred cccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEE
Confidence 9998888887777666555444 4567888999999999996543322211111111111122233344444 6789999
Q ss_pred EeCCCeEEEEEcc
Q 003106 833 GCGDSSLSSFIAG 845 (847)
Q Consensus 833 Gs~DG~V~vW~~g 845 (847)
|+.||.|++|++.
T Consensus 272 ~~~d~~i~iwd~~ 284 (388)
T d1erja_ 272 GSLDRSVKLWNLQ 284 (388)
T ss_dssp EETTSEEEEEEC-
T ss_pred EECCCcEEEEecc
Confidence 9999999999975
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=5.8e-23 Score=221.58 Aligned_cols=237 Identities=16% Similarity=0.230 Sum_probs=181.0
Q ss_pred CCCcceEEEec--CCCeEeecCCC---eEEeCCCCchhhccccccc--cCCCCCceE-EeeecCC------CCCCCCcEE
Q 003106 553 TTSKPLMMFGT--DGAGTLTSPSN---QLWDDKDLELRADMDRLVE--DGSLDDNVE-SFLSHDD------TDPRDAGGR 618 (847)
Q Consensus 553 ~~~~~~v~~s~--dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~--~g~~d~~v~-~~~s~d~------t~~~d~~v~ 618 (847)
...+..++|+| +|.++++++.+ +|||+........+..... ...+...|. +.+..++ ..+.+..++
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence 45678999997 56777776544 8999987665544332111 011222232 2234443 445678899
Q ss_pred EEeccCCceeeEeEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEc---cCCCCeEEEEEcCC-CC
Q 003106 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPS-MP 693 (847)
Q Consensus 619 vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~fsp~-~~ 693 (847)
+|+..++ +.+..+.+|...|++++|++++.+ +++++.|+.|++||+.+.+....+. .|...|++|+|+|+ ++
T Consensus 143 ~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~ 219 (325)
T d1pgua1 143 FISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 219 (325)
T ss_dssp EEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred EEeeccc---ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccce
Confidence 9999876 577788899999999999998764 7889999999999999877766654 56788999999997 67
Q ss_pred EEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEe---cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce--
Q 003106 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC-- 768 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs---p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~-- 768 (847)
+|++++.|+.|++||+++ +..+.++.+|...|.++.|+ +++. +|++++.|++|+|||+++++++..+..+...
T Consensus 220 ~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 220 FVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred eccccccccceeeeeecc-ccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence 899999999999999998 78889999888777666655 5666 5669999999999999999999988866543
Q ss_pred --EEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 769 --CWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 769 --v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
..++.+.....+++++.+|.|++||.
T Consensus 298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 23444556668889999999999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.8e-22 Score=211.47 Aligned_cols=266 Identities=18% Similarity=0.210 Sum_probs=177.1
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEE-eeecCC---CCCCCCcEEEEeccCCceeeEeE
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDD---TDPRDAGGRGMDVSQGFSFKEAN 632 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~-~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~ 632 (847)
++++||+++++++.+ +|||+.+++....+.. +...|.. .++++. +++.|+.+++|++.... .....
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~------H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~-~~~~~ 90 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG------HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-CTHVF 90 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC------CSSCEEEEEEETTTEEEEEETTCCEEEEETTTTE-EEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEEC------CCCCEEEEEEcCCCEEEEEecccccccccccccc-ccccc
Confidence 567789999887665 8999998876554321 2333433 344444 67889999999998762 22222
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC---------------------------------------------
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT--------------------------------------------- 667 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~--------------------------------------------- 667 (847)
....+...+..+.+.+++++|++++.|+.|++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (355)
T d1nexb2 91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170 (355)
T ss_dssp CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence 22223333444455555556666666666555554
Q ss_pred ------------------CCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEE
Q 003106 668 ------------------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (847)
Q Consensus 668 ------------------~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl 729 (847)
.+++.+..+.++...+.++.|++++.++++++.|++|++||+++ +..+..+.+|...|.++
T Consensus 171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLL 249 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEE
T ss_pred cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc-ccccccccccccccccc
Confidence 44444445556777889999999999999999999999999998 78899999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE-EecCCCEEEEEcCCCcEEEEcCCcccceeeeccccc
Q 003106 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV-NAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWY 808 (847)
Q Consensus 730 ~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 808 (847)
+|+++ +|++++.||.|++||++++.....+.. ..+.++ .+.....++++..++.|++||...... +......
T Consensus 250 ~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~--~~~~~~~ 322 (355)
T d1nexb2 250 RLSDK---FLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL--VHANILK 322 (355)
T ss_dssp EECSS---EEEEECTTSEEEEEETTTCCEEEEEEC--TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCB--CCSCTTT
T ss_pred ccccc---eeeeeecccccccccccccceeccccc--CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCE--EEEEecC
Confidence 99854 677999999999999998876544433 222222 222233344555688999999653221 1111111
Q ss_pred CCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 809 GSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 809 ~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+. ..++++.+.+ ..++++++.||.++||.+.|
T Consensus 323 ~~----~~V~~v~~~~--~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 323 DA----DQIWSVNFKG--KTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp TC----SEEEEEEEET--TEEEEEEESSSCEEEEEEEC
T ss_pred CC----CCEEEEEEcC--CeEEEEEECCCcEEEEEEeC
Confidence 12 2344554443 46788899999988887653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-21 Score=203.38 Aligned_cols=214 Identities=21% Similarity=0.344 Sum_probs=164.8
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--------------
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------------- 675 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-------------- 675 (847)
+++.|++|++||+.++ +.+.++++|.+.|++|+| ++++|++|+.|+.|++|++..+.....
T Consensus 30 sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (293)
T d1p22a2 30 SGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 104 (293)
T ss_dssp EEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred EEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccccccc
Confidence 6788999999999876 678889999999999987 678999999999999999876543222
Q ss_pred -----------------------------EccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe
Q 003106 676 -----------------------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 726 (847)
Q Consensus 676 -----------------------------l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V 726 (847)
+..|...|.++.+. ...+++++.|+.|++||+++ ...+..+.++...|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~v 181 (293)
T d1p22a2 105 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGI 181 (293)
T ss_dssp TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCE
T ss_pred ccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCC-CcEEEEEccccccc
Confidence 22355566666665 45788999999999999998 77888899999999
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccc-------
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINA------- 799 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~------- 799 (847)
..+.+++. .+++++.||+|++||+++...+..+..+...+.++.. +...++++..+|.|++|+......
T Consensus 182 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 257 (293)
T d1p22a2 182 ACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257 (293)
T ss_dssp EEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred ccccCCCC---eEEEecCCCEEEEEecccceeeeeecccceeeeeccc-cceEEEEEcCCCEEEEEECCCCccccccCCc
Confidence 99888754 5679999999999999999999999988888877654 456788999999999998322111
Q ss_pred eeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEE
Q 003106 800 NIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~ 843 (847)
...... ..+...+....| ++.+|++|+.||+|+|||
T Consensus 258 ~~~~~~-~~H~~~V~~v~~-------d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 258 LCLRTL-VEHSGRVFRLQF-------DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TEEEEE-CCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC
T ss_pred eeeEEe-cCCCCCEEEEEE-------cCCEEEEEecCCEEEEeC
Confidence 011111 112222333222 356799999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4e-21 Score=203.72 Aligned_cols=268 Identities=16% Similarity=0.294 Sum_probs=185.0
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCcee-----
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSF----- 628 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~----- 628 (847)
++++||+++++++.+ +|||+.++++...+.. +...|......+. +++.|+.+++|+.......
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~------h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC------CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC------CCCCEEEEEeCCCccccceecccccccccccccceecccc
Confidence 577889999887655 8999999876554321 1122222111111 3344555555554432100
Q ss_pred --------------------------------eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 003106 629 --------------------------------KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 629 --------------------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l 676 (847)
+....+..+.... ..+......+++++.|+.|++||....+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 173 (342)
T d2ovrb2 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173 (342)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred cceeEeeeecccccccccccceeEEEeecccccceeeeecccccc--eeeccccceeeeecCCCeEEEeecccceeeEEE
Confidence 1122222222222 223345668889999999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.+|...+.++.+ ++.+|++++.||+|++||++. ...+..+.+|...|.+++|+++ +|++++.|+.|++||+...
T Consensus 174 ~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~iwd~~~~ 247 (342)
T d2ovrb2 174 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTG 247 (342)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTC
T ss_pred cCcccccccccC--CCCEEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCCC---EEEEEcCCCEEEEEecccc
Confidence 999887777665 578999999999999999998 7888999999999999998864 6779999999999999999
Q ss_pred ceEEEEeeC---CceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE
Q 003106 757 SCTRVFKVE---SFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG 833 (847)
Q Consensus 757 ~~~~~~~~~---~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG 833 (847)
+....+..+ ...+.++.+. ...+++++.+|.|++||...... +..+...........+|.+.+.+ ++.+|++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~s~Dg~i~iwd~~tg~~--i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g 323 (342)
T d2ovrb2 248 QCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASN-TKLVCAVG 323 (342)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECS-SEEEEEEE
T ss_pred cccccccccceeeeceeecccC-CCeeEEEcCCCEEEEEECCCCCE--EEEEecccCCCCCCCEEEEEECC-CCCEEEEE
Confidence 888887753 4566677654 45778899999999999754322 21111111112233456666655 57899999
Q ss_pred eCCCe----EEEEEcc
Q 003106 834 CGDSS----LSSFIAG 845 (847)
Q Consensus 834 s~DG~----V~vW~~g 845 (847)
+.||+ |++||..
T Consensus 324 ~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 324 SRNGTEETKLLVLDFD 339 (342)
T ss_dssp CSSSSSCCEEEEEECC
T ss_pred eCCCCCeeEEEEEeCC
Confidence 99996 9999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2.5e-21 Score=206.42 Aligned_cols=221 Identities=17% Similarity=0.207 Sum_probs=166.6
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC--CCeEEEE
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVR 687 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~--~~I~~v~ 687 (847)
+++.|++|++||+.++ +.+.++++|.+.|++|+|+++ .+|++|+.|++|++|++...+.......+. ..+..+.
T Consensus 28 tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 103 (355)
T d1nexb2 28 TGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 103 (355)
T ss_dssp EEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred EEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788999999999877 678889999999999999985 589999999999999999887766654333 3345556
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC-------------------------------------------------------
Q 003106 688 FSPSMPRLATSSFDKTVRVWDADNP------------------------------------------------------- 712 (847)
Q Consensus 688 fsp~~~~Lasgs~Dg~V~iWD~~~~------------------------------------------------------- 712 (847)
+++++.++++++.|++|++||+++.
T Consensus 104 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i 183 (355)
T d1nexb2 104 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183 (355)
T ss_dssp EETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred cccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee
Confidence 6777777788888888888876541
Q ss_pred -------CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcC
Q 003106 713 -------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLD 785 (847)
Q Consensus 713 -------~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 785 (847)
+..+..+.++...+.++.|++++. ++++++.|+.|++||++++.++..+.+|...|.++.+.+ ..++++..
T Consensus 184 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~ 261 (355)
T d1nexb2 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAA 261 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECT
T ss_pred eeeecccccceeeeeccccccccccccccce-eeecccccceEEeeecccccccccccccccccccccccc-ceeeeeec
Confidence 122334455677888999999987 455889999999999999999999999999999998764 67889999
Q ss_pred CCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 786 AGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 786 ~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+|.|++||........... ...+.. +.+.+.++.+|++| .||.|+||++.+
T Consensus 262 dg~i~iwd~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 262 DGSIRGWDANDYSRKFSYH-----HTNLSA----ITTFYVSDNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp TSEEEEEETTTCCEEEEEE-----CTTCCC----CCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred ccccccccccccceecccc-----cCCceE----EEEEcCCCCEEEEE-eCCEEEEEECCC
Confidence 9999999976433222211 111111 22223355666655 599999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.89 E-value=1.3e-21 Score=206.49 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=157.5
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+....+.||.+.|+||+|+||+++|+||+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|++|++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence 4567789999999999999999999999999999999999999888874 6899999999999986 5667779999999
Q ss_pred ECCCCCc-------------e-------------------EEEe-------ccCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 003106 708 DADNPGY-------------S-------------------LRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (847)
Q Consensus 708 D~~~~~~-------------~-------------------~~~~-------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V 748 (847)
++..... . +..+ ......+.+++|+|++. +|++++.||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i 160 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKV 160 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEE
T ss_pred ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 9754210 0 0000 01234578889999876 56699999999
Q ss_pred EEEECCCCceEE-EEeeCCceEEEEEecC-CCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCC
Q 003106 749 RYWSINNGSCTR-VFKVESFCCWCVNAMN-RPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCR 826 (847)
Q Consensus 749 ~iWD~~~~~~~~-~~~~~~~~v~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 826 (847)
++||+++++... ....|...|.++.+.. ...++++..++.|.+|+...............+...+....|+ + +
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----~-~ 235 (299)
T d1nr0a2 161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS----P-D 235 (299)
T ss_dssp EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC----T-T
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----c-c
Confidence 999999887654 3446777888888764 4577889999999999865322211111111122333333333 3 6
Q ss_pred CcEEEEEeCCCeEEEEEccC
Q 003106 827 ECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 827 ~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+|++|+.||.|++|++.+
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp SSEEEEEETTSCEEEEETTC
T ss_pred ccceEEEcCCCEEEEEECCC
Confidence 78999999999999999754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.2e-21 Score=201.75 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=166.0
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEE----
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD---- 685 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~---- 685 (847)
+++.|++|++||+.++ +.+.++.+|.+.|.+++|+++ +|++|+.|+++++|+............+...+..
T Consensus 32 sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d2ovrb2 32 SGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106 (342)
T ss_dssp EEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred EEeCCCeEEEEECCCC---CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecc
Confidence 6788999999999877 577889999999999999864 9999999999999998765544433322222211
Q ss_pred ----------------------------------EEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEE
Q 003106 686 ----------------------------------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (847)
Q Consensus 686 ----------------------------------v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~f 731 (847)
..+......+++++.|+.|++||++. ...+..+.+|...+..+.+
T Consensus 107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~ 185 (342)
T d2ovrb2 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF 185 (342)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEE
T ss_pred cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc-ceeeEEEcCcccccccccC
Confidence 12223455678889999999999987 7778888889887776666
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCC
Q 003106 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSD 811 (847)
Q Consensus 732 sp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 811 (847)
. +. +|++++.||.|++||++.++++..+..+...+.++.+.+ ..+++++.++.|++|+...............+..
T Consensus 186 ~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 261 (342)
T d2ovrb2 186 D--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261 (342)
T ss_dssp C--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred C--CC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEecccccccccccccceeee
Confidence 4 44 567999999999999999999999999999999988765 4788999999999999664333222211111111
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
.+ .+...++.++++|+.||+|+||++.+
T Consensus 262 ~~-------~~~~~~~~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 262 AV-------TCLQFNKNFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp CE-------EEEEECSSEEEEEETTSEEEEEETTT
T ss_pred ce-------eecccCCCeeEEEcCCCEEEEEECCC
Confidence 11 11223567999999999999999864
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.2e-20 Score=193.36 Aligned_cols=200 Identities=21% Similarity=0.343 Sum_probs=155.6
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
+..+....+|...|+|++| |+++||||+.||+|+|||+++++++.++++|.+.|++|+| ++++|++|+.|++|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 4556667788999999765 7999999999999999999999999999999999999987 57799999999999999
Q ss_pred ECCCCCc------------------------------------------eEEEeccCCCCeEEEEEecCCCeEEEEEeCC
Q 003106 708 DADNPGY------------------------------------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (847)
Q Consensus 708 D~~~~~~------------------------------------------~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D 745 (847)
++..... ....+..|...|..+.+.+. .+++++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d 157 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGD 157 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETT
T ss_pred ccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCC
Confidence 9976311 12223456667777777654 55688899
Q ss_pred CcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccC
Q 003106 746 GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSC 825 (847)
Q Consensus 746 g~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 825 (847)
+.|++||+++++++..+.++...+..+.+.+ ..++++..++.|++|+........... +. ... +.+...
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~--~~~-------v~~~~~ 226 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLE-GH--EEL-------VRCIRF 226 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEEC-CC--SSC-------EEEEEC
T ss_pred CceeeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeec-cc--cee-------eeeccc
Confidence 9999999999999999999988888877654 578899999999999966433221111 11 111 112234
Q ss_pred CCcEEEEEeCCCeEEEEEcc
Q 003106 826 RECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 826 ~~~~l~sGs~DG~V~vW~~g 845 (847)
+..+|++|+.||.|++|++.
T Consensus 227 ~~~~l~sg~~dg~i~iwd~~ 246 (293)
T d1p22a2 227 DNKRIVSGAYDGKIKVWDLV 246 (293)
T ss_dssp CSSEEEEEETTSCEEEEEHH
T ss_pred cceEEEEEcCCCEEEEEECC
Confidence 57889999999999999863
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.5e-19 Score=190.66 Aligned_cols=256 Identities=11% Similarity=0.029 Sum_probs=168.1
Q ss_pred CCCCCCCcceEEEecCCCeEeecCCCeEEeCCCCchhhccccccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCcee
Q 003106 549 PHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 549 ~~~~~~~~~~v~~s~dG~~~~~~~~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~ 628 (847)
...|...++.++|+|||+++++++ .|++|++||+.++...
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s----------------------------------------~Dg~v~iwd~~~~~~~ 46 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITS----------------------------------------WDGSLTVYKFDIQAKN 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEE----------------------------------------TTSEEEEEEEETTTTE
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEE----------------------------------------CCCeEEEEEccCCCcc
Confidence 345566788999999988665432 3566777777665333
Q ss_pred eEeEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEccCCCC-eEEEEEcCCCCEEEEEeCCCcEEE
Q 003106 629 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDKTVRV 706 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-I~~v~fsp~~~~Lasgs~Dg~V~i 706 (847)
..+....+|.+.|+||+|+++ +.+|++|+.||+|++|++........+..+... +....+.++...+++++.|+++++
T Consensus 47 ~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (342)
T d1yfqa_ 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126 (342)
T ss_dssp EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccce
Confidence 444445579999999999986 558999999999999999987777666555443 455566777889999999999999
Q ss_pred EECCCCCce---EEEeccC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe---eCCceEEEEE--ecC
Q 003106 707 WDADNPGYS---LRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---VESFCCWCVN--AMN 776 (847)
Q Consensus 707 WD~~~~~~~---~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~---~~~~~v~~~~--~~~ 776 (847)
||++..... ......+ ......+.+.+.+. .+++++.|+.|++||++.......+. .....+.+.. ...
T Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred eeccccccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence 999753222 2222222 22344566677766 55689999999999998775433222 2223333333 334
Q ss_pred CCEEEEEcCCCcEEEEcCCccccee--------eecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 777 RPCLWDKLDAGDIQISDSLFINANI--------FCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~~~~~~~--------~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
...+..+..+|.+.+|+........ .+.............+..+.+.+ ++.+|+||+.||+|+|||+.+
T Consensus 206 ~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTT
T ss_pred CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCC
Confidence 5678888899999998743221111 11111111111122223344445 578899999999999999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.2e-19 Score=190.00 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=137.3
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEc-cCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLE-EHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp 690 (847)
.+..+.+|+..++. .+..+.. ...+ .++++++..+++++.|+ .|++|++...+....+. .|...|++|+|+|
T Consensus 99 ~~~~~~~~~~~~~~---~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 172 (287)
T d1pgua2 99 NDDDLLILQSFTGD---IIKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172 (287)
T ss_dssp TTSEEEEEETTTCC---EEEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred ecccceeeecccee---eeeeccc-ccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc
Confidence 34455666666552 2333332 2333 45667788888888765 79999998766655554 4778899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCC---------CeEEEEEeCCCcEEEEECCC-CceEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK---------DDLICSCDGDGEIRYWSINN-GSCTR 760 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g---------~~ll~s~s~Dg~V~iWD~~~-~~~~~ 760 (847)
++.+|++|+.||.|++||+.+.......+.+|...|.+++|+|.+ ..+|++|+.|++|+|||+++ ++.+.
T Consensus 173 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~ 252 (287)
T d1pgua2 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252 (287)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE
Confidence 999999999999999999998333344567899999999999864 34788999999999999977 56777
Q ss_pred EEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcC
Q 003106 761 VFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDS 794 (847)
Q Consensus 761 ~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~ 794 (847)
.+.+|...|.++.+.+...++++..|+.|++|+.
T Consensus 253 ~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred EeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 7888999999998877778999999999999983
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=3.1e-18 Score=183.82 Aligned_cols=186 Identities=13% Similarity=0.017 Sum_probs=145.7
Q ss_pred cceEEEec-CCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCce-EEeeecCC----C-CCCC-CcEEEEeccCC
Q 003106 556 KPLMMFGT-DGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNV-ESFLSHDD----T-DPRD-AGGRGMDVSQG 625 (847)
Q Consensus 556 ~~~v~~s~-dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v-~~~~s~d~----t-~~~d-~~v~vwd~~~~ 625 (847)
+..-.||| ||+.+++.+.. .+||+.++..... + +...+ .+.+++|+ . +..+ ..+++||+.++
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-------~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~ 76 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-------P-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG 76 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC-------S-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC
T ss_pred hhcccccCCCCCEEEEEECCeEEEEECCCCcEEEc-------c-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 34567999 99998876555 6899987765431 1 12223 33456666 2 2223 47899999887
Q ss_pred ceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe------
Q 003106 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------ 699 (847)
Q Consensus 626 ~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs------ 699 (847)
....+..|...|.+++|+|||++|++++.|+.+++|++.+++....+..|...+.+++|+|+|++|+.++
T Consensus 77 ----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~ 152 (360)
T d1k32a3 77 ----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 152 (360)
T ss_dssp ----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred ----cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccc
Confidence 3446778999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ----CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 003106 700 ----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (847)
Q Consensus 700 ----~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~ 756 (847)
.++.+++||+.+ +. ...+..|...+.+++|+|+|+.+ ++++.|+.+++||....
T Consensus 153 ~~~~~~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg~~l-~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 153 TDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp TCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECSSSS
T ss_pred eeeccccceeeecccc-Cc-eeeecccccccccccccCCCCEE-EEEeCCCceEccccccc
Confidence 345699999987 43 44555677889999999999855 58888999999997654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=4.4e-19 Score=187.13 Aligned_cols=210 Identities=9% Similarity=-0.045 Sum_probs=143.2
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE---EEccCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT---NLEEHSSLITDVRFSPSM-PRLATSSFDKTV 704 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~---~l~~h~~~I~~v~fsp~~-~~Lasgs~Dg~V 704 (847)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+++..... ...+|...|++|+|++++ .+|++|+.||+|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 4556678999999999999999999999999999999997654332 333799999999999875 578999999999
Q ss_pred EEEECCCCCceEEEeccCCCC-eEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe----eCC----ceEEEEEec
Q 003106 705 RVWDADNPGYSLRTFMGHSAS-VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----VES----FCCWCVNAM 775 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~~h~~~-V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~----~~~----~~v~~~~~~ 775 (847)
++|++.. .........+... .....+.++.. ++++++.|+++++||++.+.....+. .+. ....++ ..
T Consensus 82 ~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (342)
T d1yfqa_ 82 LKVDLIG-SPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM-DT 158 (342)
T ss_dssp EEECSSS-SSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE-EE
T ss_pred eeeeccc-ccccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceeeeeee-ec
Confidence 9999998 4444544444444 34444555544 66799999999999997654332222 111 112222 23
Q ss_pred CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 776 NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 776 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
....++.+..++.|++|+................... .......+.++..+++++.||.|.+|...
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~~v~~~~ 224 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ----IRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSC----EEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred cCCceeeecCCCcEEEEecccCcccceeeeecccccc----eeeeEeecCCCCEEEeecCCCeEEEEEec
Confidence 5567778889999999996543322111111111111 11122233456789999999999999864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2e-18 Score=180.59 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=142.4
Q ss_pred CcceEEEecCCCeEeecCCC--eEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCcee
Q 003106 555 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~~~~--~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~~ 628 (847)
....+.+.+++..++..... .+|+..+++....+.. ...+.++...+. .+..++.+++|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--- 151 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-------NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--- 151 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSCEEEEEECSSEEEEEETTTSCEEEEETTEE---
T ss_pred ceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-------cceeeeeeccCcceeeeccccceeeeeecccc---
Confidence 34566778888877766655 5688877765544321 111222222211 2333467999998643
Q ss_pred eEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEccCCCCeEEEEEcCC----------CCEEE
Q 003106 629 KEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPS----------MPRLA 696 (847)
Q Consensus 629 ~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~-~l~~h~~~I~~v~fsp~----------~~~La 696 (847)
.....+ ..|...|++|+|+|++++|++|+.||.|++||+.+++.+. .+.+|...|++++|+|. +.+|+
T Consensus 152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~ 231 (287)
T d1pgua2 152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231 (287)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred ceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeE
Confidence 333333 4578899999999999999999999999999999887654 46789999999999874 46899
Q ss_pred EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 697 sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+|+.|++|+|||++++...+..+.+|...|++|+|++++ . |++++.|++|++||+
T Consensus 232 sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRWNV 286 (287)
T ss_dssp EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEEEE
T ss_pred eecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-E-EEEEECCCeEEEEEE
Confidence 999999999999988777888889999999999999985 3 569999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=3.4e-18 Score=188.52 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=109.0
Q ss_pred CCCCCCcEEEEeccCCcee---eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEECCCCceeEEEc------
Q 003106 610 TDPRDAGGRGMDVSQGFSF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKK---AVLWHTDTLKSKTNLE------ 677 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~---V~vwd~~~~~~~~~l~------ 677 (847)
+++.|++|++||+.++... +....+.+|...|++|+|+|||++|++|+.|++ |+|||+++++.+.++.
T Consensus 200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~ 279 (393)
T d1sq9a_ 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279 (393)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc
Confidence 6788999999999987432 233456789999999999999999999999975 8999999998888764
Q ss_pred -------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeE----EEEEecCCCe
Q 003106 678 -------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM----SLDFHPNKDD 737 (847)
Q Consensus 678 -------~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~----sl~fsp~g~~ 737 (847)
+|...|++|+|+|++++|+||+.|++|+|||+++ +.++.++.+|.+.|. .++|++++..
T Consensus 280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC-CCEEEEECCcCCcccCCccEEEECCCCCE
Confidence 7999999999999999999999999999999998 889999999987765 4778888764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=3.6e-16 Score=167.42 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=135.4
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEccCCCCeEEEEEcC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp 690 (847)
.++.|.+||+..+. . ..+ +|...|.+++|+|||++|++++.|. .|++||+++++.. .+..|...|.+++|+|
T Consensus 22 ~~g~v~v~d~~~~~---~-~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~sp 95 (360)
T d1k32a3 22 SRGQAFIQDVSGTY---V-LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR 95 (360)
T ss_dssp ETTEEEEECTTSSB---E-EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT
T ss_pred ECCeEEEEECCCCc---E-EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecc
Confidence 35689999998772 2 223 6999999999999999998877553 7999999977664 6678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEE---------eCCCcEEEEECCCCceEEE
Q 003106 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRV 761 (847)
Q Consensus 691 ~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~---------s~Dg~V~iWD~~~~~~~~~ 761 (847)
++++|++++.++.+++|++.+ +.....+..|...+.+++|+|+|+.++++. ..++.+++||+.+++....
T Consensus 96 dg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 96 NGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174 (360)
T ss_dssp TSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred cccccceeccccccccccccc-cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee
Confidence 999999999999999999998 777888888999999999999999766443 2345699999998876655
Q ss_pred EeeCCceEEEEEec-CCCEEEEEcCCCcEEEEc
Q 003106 762 FKVESFCCWCVNAM-NRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 762 ~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d 793 (847)
.... ..+.++.+. +...++.+..++.+.+|+
T Consensus 175 ~~~~-~~~~~~~~spdg~~l~~~s~~~~~~~~d 206 (360)
T d1k32a3 175 TTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPD 206 (360)
T ss_dssp SCSS-SBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cccc-cccccccccCCCCEEEEEeCCCceEccc
Confidence 4433 334444333 445566667777777666
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.68 E-value=6.5e-16 Score=172.21 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=148.4
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--E---ccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--L---EEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l---~~h~~~I~~ 685 (847)
...|+.|++||+.++ +.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.... + .+|...+.+
T Consensus 38 ~~~dg~v~vwD~~t~---~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 38 LRDAGQIALVDGDSK---KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp ETTTTEEEEEETTTC---SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred EcCCCEEEEEECCCC---cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence 446899999999977 6677777764 599999999999999999999999999998875433 2 256677788
Q ss_pred EEEcCCCCEEEE-EeCCCcEEEEECCCCCceEEEe---------------------------------------------
Q 003106 686 VRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTF--------------------------------------------- 719 (847)
Q Consensus 686 v~fsp~~~~Las-gs~Dg~V~iWD~~~~~~~~~~~--------------------------------------------- 719 (847)
++|+|||++|++ +..+++|++||..+. .++..+
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 889999998755 457999999998862 222111
Q ss_pred ----------ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce----EEEEEecCCCEEE--EE
Q 003106 720 ----------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC----CWCVNAMNRPCLW--DK 783 (847)
Q Consensus 720 ----------~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~----v~~~~~~~~~~l~--~~ 783 (847)
..+...+..+.|+|++++++++...+..+.+||..+++.+..+...... ...+.......++ ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 1234445678888888877777777778888888888877766543211 1111222222232 23
Q ss_pred cCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEE-------EEeCCCeEEEEEccC
Q 003106 784 LDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLY-------TGCGDSSLSSFIAGT 846 (847)
Q Consensus 784 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~-------sGs~DG~V~vW~~gt 846 (847)
..++.+.+|+........................+.+.+.+ ++.+|+ +|+.|++|+||++.+
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCC
Confidence 34556666653322111000000000000112234455555 677777 466789999999865
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.67 E-value=4.8e-14 Score=146.70 Aligned_cols=251 Identities=13% Similarity=0.040 Sum_probs=174.7
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
..+||++++++...+.. + .....+.+++|+ ++..++.|++||+.++ +.+.++..|. .+..++|++
T Consensus 14 v~v~D~~t~~~~~~i~~----g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPV----G--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEEEETTTTEEEEEEEC----S--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECT
T ss_pred EEEEECCCCeEEEEEEC----C--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-ccccccccc
Confidence 48899999987665431 1 111223455554 3456789999999977 5566666665 578999999
Q ss_pred CCCEEEE-EeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceEEEeccCCCCe
Q 003106 649 DGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASV 726 (847)
Q Consensus 649 dg~~Las-gs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V 726 (847)
+++.+++ +..++.+++||..+++.+..+..+ ..+.+++|+|++..++ ++..++.+++|+..+ ...+..+.. ...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSV-GRSP 160 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-CSSE
T ss_pred ccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccc-cceeeeccc-CCCc
Confidence 9986654 556788999999999988888654 5678999999999875 455688999999998 666666654 4568
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEc---CCCcEEEEcCCcccceeee
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKL---DAGDIQISDSLFINANIFC 803 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~~g~i~i~d~~~~~~~~~~ 803 (847)
..+.|++++..+++++..++.+.+|+....+....+..+..............++... ..+.|.+||...... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~ 238 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TA 238 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EE
T ss_pred eEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE--EE
Confidence 8999999999888777777889999999888877777665544433334444444332 345699998653322 21
Q ss_pred cccccCCCCccccccccccccCCCcE-EEEEeCCCeEEEEEccC
Q 003106 804 GLGWYGSDEIPAPSWKVSCRSCRECC-LYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 804 ~~~~~~~~~~~~~~w~~~~~~~~~~~-l~sGs~DG~V~vW~~gt 846 (847)
.... .. ..+.+.+.+ ++.+ +++++.|++|+|||+.+
T Consensus 239 ~~~~--~~----~~~~va~sp-dg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 239 RIPV--GP----DPAGIAVTP-DGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp EEEC--CS----SEEEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred EEcC--CC----CEEEEEEeC-CCCEEEEEECCCCeEEEEECCC
Confidence 1111 11 123444445 4554 57888999999999865
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=7.1e-15 Score=164.41 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=136.2
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEE---ccCCCCeEE
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITD 685 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l---~~h~~~I~~ 685 (847)
...+++|.+||..++ +.+..+..| ..+..++|+|||++|++++.|++|++||+.+++.. ..+ .+|.+.+.+
T Consensus 38 ~~d~g~v~v~D~~t~---~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 38 LRDAGQIALIDGSTY---EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp ETTTTEEEEEETTTC---CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 346789999999977 667777766 46999999999999999999999999999877643 333 356667778
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEECCCCCceEEEecc-----------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 003106 686 VRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (847)
Q Consensus 686 v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~~~~~~~~-----------h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~ 753 (847)
+.|+|||++| ++++.+++|+|||..+ +.++..+.. +...+..|.+++++..++++...++.|.+||.
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCcc-ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 8889999986 6788899999999998 677766654 34557789999999988889999999999999
Q ss_pred CCCceEEEEee-CCceEEEEEecCCC-EEEE-EcCCCcEEEEcCC
Q 003106 754 NNGSCTRVFKV-ESFCCWCVNAMNRP-CLWD-KLDAGDIQISDSL 795 (847)
Q Consensus 754 ~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~-~~~~g~i~i~d~~ 795 (847)
.+++....... ....+.++.+..+. .++. ...+..+.+++..
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 98876655443 33445666665443 3333 3444556666643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.63 E-value=8.5e-14 Score=144.76 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=136.3
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEc
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 689 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fs 689 (847)
...+++|.+||+.++ +.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+.++..+. .+..++|+
T Consensus 8 ~~~~~~v~v~D~~t~---~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 8 NSESDNISVIDVTSN---KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred ECCCCEEEEEECCCC---eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence 346788999999987 45555543 35688999999999875 66678999999999999999998775 46899999
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 690 PSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 690 p~~~~La-sgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
+++..++ ++..++.+++||..+ +..+..+.. ...+.+++|+|++..+++++..++.+.+||..++..+..+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred cccccccccccccceeeeccccc-ceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc
Confidence 9998665 455688999999998 666666654 4568899999999998888888999999999999998888776553
Q ss_pred EEEEEecCCCEEEEEcCC-CcEEEEcCC
Q 003106 769 CWCVNAMNRPCLWDKLDA-GDIQISDSL 795 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~-g~i~i~d~~ 795 (847)
.......+...++....+ +.+.+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eEEEeeccccceeeeccccccccccccc
Confidence 332233344455555444 555566544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=1.5e-14 Score=152.68 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=114.1
Q ss_pred CCCCCcEEEEeccCCceeeEeEEeec--CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEccCC-----CC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHS-----SL 682 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~-----~~ 682 (847)
++.|+.|++||+.++ +.+.++.. +...+.+++|+|||++| ++++.|+.|++||+.+++.+..+..+. ..
T Consensus 7 ~~~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 7 PARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EcCCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 456899999999987 45555543 45668899999999987 466789999999999999998887654 33
Q ss_pred eEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 003106 683 ITDVRFSPSMPRLATSS------------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs------------~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~i 750 (847)
+..++|+|+++++++++ .+..+.+||..+ +..+..+. +...+.+++|+++|++++ +++ +.+.+
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~ 158 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHV 158 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEE
T ss_pred eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-CeEEEecc-ccCCceEEEEcCCCCEEE-EEc--CCcce
Confidence 56899999999998776 467899999998 66677765 445688999999999766 554 45888
Q ss_pred EECCCCceEEEEe
Q 003106 751 WSINNGSCTRVFK 763 (847)
Q Consensus 751 WD~~~~~~~~~~~ 763 (847)
||+.+++.+..+.
T Consensus 159 ~d~~~~~~~~~~~ 171 (337)
T d1pbyb_ 159 MDPEAGTLVEDKP 171 (337)
T ss_dssp EETTTTEEEEEEC
T ss_pred eeeecCcEEEEee
Confidence 9998887666553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=3.4e-14 Score=158.81 Aligned_cols=265 Identities=11% Similarity=0.012 Sum_probs=175.1
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----CCCCCCcEEEEeccCCce--eeEeEEeecCCCCEEEEEEc
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS--FKEANSVRASTSKVICCHFS 647 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----t~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~l~fs 647 (847)
..|||.+++++...+.. +. ....+.+++|+ ++++|+++++||+.++.. ..++....+|.+.+.+.+|+
T Consensus 44 v~v~D~~t~~v~~~~~~----g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 44 IALIDGSTYEIKTVLDT----GY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp EEEEETTTCCEEEEEEC----SS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred EEEEECCCCcEEEEEeC----CC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 47899999988776432 21 22344577777 567899999999988632 22334445677778888899
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCceeEEEccC-----------CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCc
Q 003106 648 SDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEH-----------SSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGY 714 (847)
Q Consensus 648 pdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h-----------~~~I~~v~fsp~~~~L-asgs~Dg~V~iWD~~~~~~ 714 (847)
|||++| ++++.+++|+|||..+++++..+..| ...+..|.+++++..+ ++...++.|.+||..+ ..
T Consensus 118 pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~-~~ 196 (432)
T d1qksa2 118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-LN 196 (432)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC-SS
T ss_pred CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC-CC
Confidence 999986 67888999999999999998887643 3456788999999876 5566789999999987 34
Q ss_pred eEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC-----ceEEEEEecCCCEEEEEcC--C
Q 003106 715 SLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES-----FCCWCVNAMNRPCLWDKLD--A 786 (847)
Q Consensus 715 ~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~~~~~--~ 786 (847)
..... ..+...+..++|+|+|+++++++..++.|.+||.++++.+..+.... .............++.... +
T Consensus 197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~ 276 (432)
T d1qksa2 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 276 (432)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCC
Confidence 33322 24566789999999999888888888899999999998887775432 2222223333333343333 5
Q ss_pred CcEEEEcCCccc---------ceeeeccc---ccCCCCccccccccccc-----------cCCCcEEEEEeCCCeEEEEE
Q 003106 787 GDIQISDSLFIN---------ANIFCGLG---WYGSDEIPAPSWKVSCR-----------SCRECCLYTGCGDSSLSSFI 843 (847)
Q Consensus 787 g~i~i~d~~~~~---------~~~~~~~~---~~~~~~~~~~~w~~~~~-----------~~~~~~l~sGs~DG~V~vW~ 843 (847)
+.+.+|...... ..++...+ ..........+|..... ..++..+++++.|+++++|+
T Consensus 277 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~ 356 (432)
T d1qksa2 277 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 356 (432)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEEC
T ss_pred ceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecc
Confidence 567777532211 01111111 00111222334432211 12566788999999999998
Q ss_pred cc
Q 003106 844 AG 845 (847)
Q Consensus 844 ~g 845 (847)
++
T Consensus 357 ~~ 358 (432)
T d1qksa2 357 IA 358 (432)
T ss_dssp HH
T ss_pred cc
Confidence 75
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.53 E-value=1.3e-13 Score=153.25 Aligned_cols=187 Identities=9% Similarity=-0.044 Sum_probs=126.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE--E---eccCCCCe
Q 003106 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR--T---FMGHSASV 726 (847)
Q Consensus 652 ~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~--~---~~~h~~~V 726 (847)
++++++.||+|+|||+.+++++.++..|. .+..|+|+|||++|++++.|++|++||+.+ +.... . ..+|...+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t-~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTS-SSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccC-CceeEEEEEeCCCCCcceE
Confidence 56778899999999999999999998774 589999999999999999999999999998 43222 2 23566777
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEE-----------EEE--ecCCCEEEEEcCCCcEEEEc
Q 003106 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCW-----------CVN--AMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 727 ~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~-----------~~~--~~~~~~l~~~~~~g~i~i~d 793 (847)
.+++|+|||+++++++..++.|++||..++.++..+..+...+. .+. .+....++.....+.+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 88889999998888888999999999999998888775533221 111 11222333444444554444
Q ss_pred CCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 794 SLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
............. .....+.+...+....++++...+..+.+|+..+
T Consensus 192 ~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 238 (426)
T d1hzua2 192 YKDIDNLTVTSIG------AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238 (426)
T ss_dssp CSSSSSCEEEEEE------CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred eccccceeeEEec------cCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence 3322111111111 1122344445554444555556777788887653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=3e-13 Score=142.60 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=136.2
Q ss_pred CcceEEEecCCCeEeec-CC---CeEEeCCCCchhhccccccccCCCCCceEEeeecCC----------------CCCCC
Q 003106 555 SKPLMMFGTDGAGTLTS-PS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD----------------TDPRD 614 (847)
Q Consensus 555 ~~~~v~~s~dG~~~~~~-~~---~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~----------------t~~~d 614 (847)
....++|+|||+++++. .. ..+||+.+++....+..............+.+++++ ....+
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence 34678999999987543 22 378999998876544321110000000011111221 22346
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE------------------
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------------ 676 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l------------------ 676 (847)
..+.+||..++ +....+. +...+.+++|++||+++++++.| +.+||..+++.+.++
T Consensus 115 ~~~~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (337)
T d1pbyb_ 115 TRVALYDAETL---SRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp CEEEEEETTTT---EEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred cceeeccccCC---eEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCccee
Confidence 78889999877 3444444 44568899999999999998644 677887655443332
Q ss_pred ------------------------------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 677 ------------------------------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 677 ------------------------------------------------~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
..+...+.++.+++++.+++++ ++.|++||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d 266 (337)
T d1pbyb_ 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEE
Confidence 1233455667778888877665 58999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE 765 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~ 765 (847)
+.+ +..+..+. +...+.+|+|+|+|++++ +++.|++|+|||+++++.+..++..
T Consensus 267 ~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~-v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 267 LEK-NASIKRVP-LPHSYYSVNVSTDGSTVW-LGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTT-TEEEEEEE-CSSCCCEEEECTTSCEEE-EESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCC-CcEEEEEc-CCCCEEEEEECCCCCEEE-EEeCCCcEEEEECCCCcEEEEEECC
Confidence 998 66676664 567789999999998655 7888999999999999999888754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.51 E-value=3.1e-12 Score=137.85 Aligned_cols=140 Identities=11% Similarity=0.001 Sum_probs=105.6
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccCCCCe
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI 683 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~~~I 683 (847)
.+.+.+||..++ +.+.++..+... .++|+|||++|++++ .++.|.|||+.+++.+..+..+....
T Consensus 46 ~~~v~v~D~~tg---~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 120 (373)
T d2madh_ 46 IIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred CceEEEEECCCC---CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence 345677887766 455556555443 799999999999875 45789999999999998887665543
Q ss_pred -------EEEEEcCCCCEEEEEe--CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 684 -------TDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 684 -------~~v~fsp~~~~Lasgs--~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
..+.|+++++.++... .++.+.+|+... ...+. +...+.++.|+++++.++++.+.|+.+.+||..
T Consensus 121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~ 195 (373)
T d2madh_ 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA 195 (373)
T ss_pred eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-CeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence 4578888888765554 466789999876 33332 334567899999999898899999999999999
Q ss_pred CCceEEEEe
Q 003106 755 NGSCTRVFK 763 (847)
Q Consensus 755 ~~~~~~~~~ 763 (847)
.++......
T Consensus 196 ~~~~~~~~~ 204 (373)
T d2madh_ 196 GGAAGAGLV 204 (373)
T ss_pred CceeeEEEe
Confidence 887666554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.49 E-value=2.2e-13 Score=144.26 Aligned_cols=266 Identities=10% Similarity=-0.021 Sum_probs=164.9
Q ss_pred EEecCCCeEeecCCC---eEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEe
Q 003106 560 MFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEA 631 (847)
Q Consensus 560 ~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~ 631 (847)
+|+++|+++++.+.+ .+||++++++...+.. ..+ .....+.+++|+ ++..++.|++||+.++. .+
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~--~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~---~~ 75 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NT 75 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCC--CCcceEEECCCCCEEEEEECCCCcEEEEeCccCe---ee
Confidence 578999999886654 7999999987654321 111 112234455665 45678999999999873 33
Q ss_pred EEeecCC------CCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceeEEEccC--CCCeEEEEEcCC
Q 003106 632 NSVRAST------SKVICCHFSSDGKLLATGG------------HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPS 691 (847)
Q Consensus 632 ~~l~~h~------~~V~~l~fspdg~~Lasgs------------~Dg~V~vwd~~~~~~~~~l~~h--~~~I~~v~fsp~ 691 (847)
..+.... ..+..++|+|||++|++++ .++.+.+||..+++....+..+ ...+..+.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T d1jmxb_ 76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155 (346)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence 3333221 2356899999999998775 4778999998877665444322 345677778888
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEE-------------------------EEEeCCC
Q 003106 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI-------------------------CSCDGDG 746 (847)
Q Consensus 692 ~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll-------------------------~s~s~Dg 746 (847)
+..+++ ++.+.+||+.+ +..+..+..+. .+..+.|+|++..++ +++..++
T Consensus 156 ~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 156 GSLYVA---GPDIYKMDVKT-GKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp SCEEEE---SSSEEEECTTT-CCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CEEEEe---CCcceEEEccC-CCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 766554 35689999987 66666665432 233444455443322 2333455
Q ss_pred cEEEEECCCCceEEE-EeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCcccccccccccc
Q 003106 747 EIRYWSINNGSCTRV-FKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRS 824 (847)
Q Consensus 747 ~V~iWD~~~~~~~~~-~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 824 (847)
.|.+||+.++..... +..+...+.++... ....++. ...+.+.+||...... ...... + . ..+.+.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~d~~~~~~--~~~~~~-~-~----~~~~va~s~ 301 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRKL--IKAANL-D-H----TYYCVAFDK 301 (346)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EEESEEEEEETTTTEE--EEEEEC-S-S----CCCEEEECS
T ss_pred eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEE-ecCCeEEEEECCCCcE--EEEEcC-C-C----CEEEEEEcC
Confidence 678888888765543 44555555555443 3333333 3345789998653322 211111 1 1 233444444
Q ss_pred CCCcEEEEEeCCCeEEEEEccCC
Q 003106 825 CRECCLYTGCGDSSLSSFIAGTY 847 (847)
Q Consensus 825 ~~~~~l~sGs~DG~V~vW~~gty 847 (847)
++.+|++|+.||.|+|||+.+.
T Consensus 302 -DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 302 -KGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp -SSSCEEEESBSSEEEEEETTTT
T ss_pred -CCCEEEEEeCCCcEEEEECccC
Confidence 7888999999999999999763
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.9e-12 Score=136.63 Aligned_cols=233 Identities=10% Similarity=0.018 Sum_probs=145.9
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEc---cCCCCeEEEE
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE---EHSSLITDVR 687 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~---~h~~~I~~v~ 687 (847)
..++.|++|++.....++.+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|+++......++. .+...+.+|+
T Consensus 11 ~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~ 89 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 89 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence 56789999999865445554444 4778999999999999986655 58999999998654433332 3445678899
Q ss_pred EcCCCCEEEEEeC-CCcEEEEECCCCCc-eEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--
Q 003106 688 FSPSMPRLATSSF-DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-- 763 (847)
Q Consensus 688 fsp~~~~Lasgs~-Dg~V~iWD~~~~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~-- 763 (847)
|+|||++|++++. +++|++|+...... .......+...+.++.|+|++..++++...+..|.+|++..........
T Consensus 90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred EcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence 9999999988875 77899999876321 2233345677889999999999877666677889999988754332221
Q ss_pred ----eCCceEEEEEecCC--CEEEEEcCCCcEEEEcCCcccceeee--ccccc-CCCCccccccccccccCCCcEEEEEe
Q 003106 764 ----VESFCCWCVNAMNR--PCLWDKLDAGDIQISDSLFINANIFC--GLGWY-GSDEIPAPSWKVSCRSCRECCLYTGC 834 (847)
Q Consensus 764 ----~~~~~v~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~--~~~~~-~~~~~~~~~w~~~~~~~~~~~l~sGs 834 (847)
........+.+... ..++.....+...+++.......... ..... ...........+...+....+++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence 12233445555433 23344455566666653322211111 11000 00011111112222332334666778
Q ss_pred CCCeEEEEEcc
Q 003106 835 GDSSLSSFIAG 845 (847)
Q Consensus 835 ~DG~V~vW~~g 845 (847)
.++.+.+|++.
T Consensus 250 ~~~~~~~~~~~ 260 (333)
T d1ri6a_ 250 TASLITVFSVS 260 (333)
T ss_dssp TTTEEEEEEEC
T ss_pred cCCeEEEEEEc
Confidence 88899999764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.8e-11 Score=126.31 Aligned_cols=263 Identities=9% Similarity=0.044 Sum_probs=157.3
Q ss_pred CeEEeCCCCchhhccccccccCCCCCceEEeeecCC-----CCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC
Q 003106 574 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (847)
Q Consensus 574 ~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~-----t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp 648 (847)
+++||+........+..+ ..+ .....+.+++|+ ++..++.|++|++..............+...+.+++|+|
T Consensus 16 I~v~~~~~~~~l~~~~~~-~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp 92 (333)
T d1ri6a_ 16 IHVWNLNHEGALTLTQVV-DVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH 92 (333)
T ss_dssp EEEEEECTTSCEEEEEEE-ECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT
T ss_pred EEEEEEcCCCCeEEEEEE-cCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC
Confidence 488998754322222211 111 111233456666 345688999999987533323333334556678899999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceeEE--EccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEEE-----e
Q 003106 649 DGKLLATGGH-DKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRT-----F 719 (847)
Q Consensus 649 dg~~Lasgs~-Dg~V~vwd~~~~~~~~~--l~~h~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~~-----~ 719 (847)
||++|++++. ++.|++|+......... ...+...+.++.|+|+++++++++. +..|.+|+.......... .
T Consensus 93 Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (333)
T d1ri6a_ 93 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 172 (333)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence 9999999885 67899999876554433 3456777899999999998887774 567999998874433221 1
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc----eEEEEee------CCceEEEEE--ecCCCEEEEEcCCC
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFKV------ESFCCWCVN--AMNRPCLWDKLDAG 787 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~----~~~~~~~------~~~~v~~~~--~~~~~~l~~~~~~g 787 (847)
.........++|++++..++++....+.+.+|++.... ....+.. .......+. .+....+......+
T Consensus 173 ~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~ 252 (333)
T d1ri6a_ 173 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 252 (333)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC
Confidence 23456678999999999887777778889999876532 1112211 111222222 23333444555667
Q ss_pred cEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEE-eCCCeEEEEEc
Q 003106 788 DIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTG-CGDSSLSSFIA 844 (847)
Q Consensus 788 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sG-s~DG~V~vW~~ 844 (847)
.+.+|+................... .+++.+.+ ++++|+++ ..++.|+||++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~a~sp-DGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 253 LITVFSVSEDGSVLSKEGFQPTETQ----PRGFNVDH-SGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEEEEECTTSCCEEEEEEEECSSS----CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCCC----eeEEEEeC-CCCEEEEEECCCCeEEEEEE
Confidence 7888764432221111111111111 23344444 56665555 56789999965
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=1.8e-11 Score=130.43 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEccCC----------CCeEEEEEcCCCCEEEEEeCC-------
Q 003106 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHS----------SLITDVRFSPSMPRLATSSFD------- 701 (847)
Q Consensus 641 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~~h~----------~~I~~v~fsp~~~~Lasgs~D------- 701 (847)
+.++.+.+++..++.++.++.|++|++..++.. .....+. .....+++++++..++....+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred eeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence 444567777778888899999999999876542 1222221 223458899999988766543
Q ss_pred ---CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEE
Q 003106 702 ---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 702 ---g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~-ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~ 772 (847)
..|++||..+ ++.+..+.. ...+.+++|+|||+. ++++++.|+.|+|||+++++.++++........++
T Consensus 277 ~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i 349 (355)
T d2bbkh_ 277 TASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349 (355)
T ss_dssp SCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred CCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEE
Confidence 3699999998 666666653 355889999999985 56677889999999999999999987654433333
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.24 E-value=2.1e-10 Score=120.61 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=153.2
Q ss_pred CCcceEEEecCCCeEeecCC----CeEEeCCCCchhhccccccccCCC-CCceEEeeecCC----------------CCC
Q 003106 554 TSKPLMMFGTDGAGTLTSPS----NQLWDDKDLELRADMDRLVEDGSL-DDNVESFLSHDD----------------TDP 612 (847)
Q Consensus 554 ~~~~~v~~s~dG~~~~~~~~----~~iWD~~~~~~~~~~~~~~~~g~~-d~~v~~~~s~d~----------------t~~ 612 (847)
.....++|+|||+++++.+. ..+||+.+++....+......... .....+.+++|+ ...
T Consensus 40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 34568999999998765432 378999998766543321111100 001111222222 233
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.+..+.+||..++.....+.... ....+..+.+++++++++++ ..+.+||+.+++.+..+..+.. +..+.|+|++
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDV 194 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBC
T ss_pred CcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC-ccceEEeccc
Confidence 56778899988774444433322 34456677788888766653 5699999999998888764432 3334444443
Q ss_pred CE--------------------------EEEEeCCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCC
Q 003106 693 PR--------------------------LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746 (847)
Q Consensus 693 ~~--------------------------Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg 746 (847)
.. ++++..++.|.+||+.+.......+..|...+.++.+++++..++ .+. ++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 272 (346)
T d1jmxb_ 195 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LN 272 (346)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ES
T ss_pred cEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-Eec-CC
Confidence 32 333445667888999885555566677888999999999988665 444 46
Q ss_pred cEEEEECCCCceEEEEeeCCceEEEEEec-CCCEEEEEcCCCcEEEEcCCc
Q 003106 747 EIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 747 ~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~~g~i~i~d~~~ 796 (847)
.|++||+.+++.+..+.... .+.++.+. +...++.+..++.|.+||...
T Consensus 273 ~v~v~d~~~~~~~~~~~~~~-~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 273 RLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eEEEEECCCCcEEEEEcCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 89999999999988887543 45566655 456788888999999999764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.22 E-value=5.5e-10 Score=119.78 Aligned_cols=203 Identities=9% Similarity=-0.046 Sum_probs=134.1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe----------
Q 003106 635 RASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---------- 699 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs---------- 699 (847)
..+..++.+++++|||+.++... .++.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 35788899999999999987652 3467999999999999998766543 799999999998875
Q ss_pred CCCcEEEEECCCCCceEEEeccCCCCe-------EEEEEecCCCeEEEEE-eCCCcEEEEECCCCceEEEEeeCCceEEE
Q 003106 700 FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKVESFCCWC 771 (847)
Q Consensus 700 ~Dg~V~iWD~~~~~~~~~~~~~h~~~V-------~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~ 771 (847)
.++.|+|||+.+ +..+..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+......... ...
T Consensus 95 ~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 171 (373)
T d2madh_ 95 RTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPT--CYH 171 (373)
T ss_pred cceEEEEEECCC-CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccce--eEE
Confidence 357899999998 67777666554433 4578889988765443 446789999998877655554322 122
Q ss_pred EEecCCCEEEEEcCCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 772 VNAMNRPCLWDKLDAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 772 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+..+....++....++.+.+|+.................. ...+...........++..+.|+.+++|+..
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA---QNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC---ccceeeeEEECCCceEEEecCCceEEEEEcC
Confidence 3334455667788889999998553322222111111000 0011111112234556667788888888764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=1.5e-09 Score=115.14 Aligned_cols=192 Identities=8% Similarity=-0.019 Sum_probs=122.9
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEE
Q 003106 644 CHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS----------SFDKTVRVWD 708 (847)
Q Consensus 644 l~fspdg~~Lasgs-----~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasg----------s~Dg~V~iWD 708 (847)
.+.+||++++++.. .+..|.|||.++++.+.++..+.. ..++|+|||++|++. +.|+.|++||
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 45689999988764 356799999999999998876544 479999999988764 3478999999
Q ss_pred CCCCCceEEEeccCC-------CCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 709 ADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~-------~~V~sl~fsp~g~~ll~s~-s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
+.+ +..+..+..+. .....++|+++++++++.. +.+..+.+||..+++.+..+......... .......
T Consensus 85 ~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 161 (355)
T d2bbkh_ 85 PVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--PTAPDTF 161 (355)
T ss_dssp TTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE--EEETTEE
T ss_pred CCC-CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe--ecCCcce
Confidence 998 66666654332 2345689999999776543 45678999999999988888765543221 1223333
Q ss_pred EEEcCCCcEEEEcCCcccc-eeeecccc--cCCCCccccccccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 781 WDKLDAGDIQISDSLFINA-NIFCGLGW--YGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~~~-~~~~~~~~--~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
+....++...++....... ........ ..........+ ......++.++.+|.+++|++.
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~ 224 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY-----SQKAGRLVWPTYTGKIHQIDLS 224 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE-----ETTTTEEEEEBTTSEEEEEECT
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc-----cCCCCeEEEecCCCeEEEEecC
Confidence 3344454444433221111 11111110 01111111111 1245678888999999999875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=6.8e-09 Score=111.64 Aligned_cols=131 Identities=8% Similarity=-0.068 Sum_probs=91.7
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEEccCCC---
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS--- 681 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~~--- 681 (847)
..+.+||..++ +.+.++..+... .++|+|||++|++.+ .|++|++||..+++.+..+..+..
T Consensus 46 ~~~~~~d~~~~---~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~ 120 (368)
T d1mdah_ 46 TENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred ceEEEEeCCCC---cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee
Confidence 34556677766 566666666655 589999999998865 367899999999999888765432
Q ss_pred ----CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 682 ----LITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 682 ----~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
....++|+|||++|+++. .++.|.+||+.+ .+.+..+..+.... +.+.+...++..+.||.+.+|++..
T Consensus 121 ~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~ 194 (368)
T d1mdah_ 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCS
T ss_pred cccCCccceEECCCCCEEEEEeCCCCeEEEEECCC-CcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecC
Confidence 234689999999998776 579999999998 67677665544322 1223333445556666666666543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.83 E-value=8e-09 Score=111.08 Aligned_cols=200 Identities=6% Similarity=-0.069 Sum_probs=127.4
Q ss_pred cceEEEecCCCeEeecC----CCeEEeCCCCchhhccccccccCCCCCceEEeeecC---CCCCCCCcEEEEeccCCcee
Q 003106 556 KPLMMFGTDGAGTLTSP----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD---DTDPRDAGGRGMDVSQGFSF 628 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~----~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d---~t~~~d~~v~vwd~~~~~~~ 628 (847)
...+.|+|||+++++.+ ...+||+.+.+....+..-.. ...+.... .....|+.+.+|++......
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-------FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-------CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-------ceEccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 34689999999987653 337899999876654321100 00000000 04456778888887654222
Q ss_pred eEe---EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--ccC----------CCCeEEEEEcCCCC
Q 003106 629 KEA---NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEH----------SSLITDVRFSPSMP 693 (847)
Q Consensus 629 ~~~---~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~h----------~~~I~~v~fsp~~~ 693 (847)
... ..+..+...+..+.+.+++..+++. ++.|+++++......... ..+ ......++++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 276 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred eeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC
Confidence 111 1233455566678888888776654 456777776654433221 111 11234578899988
Q ss_pred EEEEEeCC---------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 694 RLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 694 ~Lasgs~D---------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~-ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
.++....+ .+|++||..+ ++.+..+. +...+.+++|+|||+. +++++..|+.|+|||..+++.+..+.
T Consensus 277 ~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 277 GIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEEEecCCCceeecCCceEEEEECCC-CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 77665322 3599999998 66666654 3456889999999975 56677789999999999999999887
Q ss_pred eCC
Q 003106 764 VES 766 (847)
Q Consensus 764 ~~~ 766 (847)
...
T Consensus 355 ~g~ 357 (368)
T d1mdah_ 355 LDK 357 (368)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.79 E-value=2.1e-07 Score=101.77 Aligned_cols=177 Identities=7% Similarity=-0.049 Sum_probs=116.8
Q ss_pred CCCCCcEEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCC
Q 003106 611 DPRDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGK--LLATGGHDK-----------------KAVLWHTDTL 670 (847)
Q Consensus 611 ~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~--~Lasgs~Dg-----------------~V~vwd~~~~ 670 (847)
...+..|.++|+.+. ++...+. .+...+..++|+|||+ +++..+.+. .+..+|..+.
T Consensus 90 d~~~~rVavIDl~t~---k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 90 DKANTRVARIRLDIM---KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp ETTTTEEEEEETTTT---EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred cCCCCEEEEEECCCC---cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 345678999999876 4444443 4577899999999998 455444432 2356888888
Q ss_pred ceeEEEccCCCCeEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEEC
Q 003106 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFD-----------------------------------------KTVRVWDA 709 (847)
Q Consensus 671 ~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D-----------------------------------------g~V~iWD~ 709 (847)
+....+... ..+..++|+|+|+++++.+.+ +.+.|++.
T Consensus 167 ~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~ 245 (441)
T d1qnia2 167 DVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR 245 (441)
T ss_dssp SEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred eeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence 887777644 357889999999999887754 23444444
Q ss_pred CCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCc-----------eEEEEeeCCceEEEEEecCCC
Q 003106 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----------CTRVFKVESFCCWCVNAMNRP 778 (847)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~-----------~~~~~~~~~~~v~~~~~~~~~ 778 (847)
.. ...+..+..... ...+.++|||+++++++..|++|.|||+++.. ++...........-..|+.+.
T Consensus 246 ~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 246 GE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp SS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred cC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 43 445555554443 67899999999999999999999999986522 111111111112223456655
Q ss_pred EEE-EEcCCCcEEEEc
Q 003106 779 CLW-DKLDAGDIQISD 793 (847)
Q Consensus 779 ~l~-~~~~~g~i~i~d 793 (847)
..| +..-+..|..|+
T Consensus 324 ~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWN 339 (441)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eEEEcccccceEEEec
Confidence 555 445667788887
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.78 E-value=1.3e-07 Score=103.44 Aligned_cols=245 Identities=11% Similarity=0.020 Sum_probs=145.9
Q ss_pred cccCCCCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEee---------------------------cCCCCEEEE
Q 003106 592 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR---------------------------ASTSKVICC 644 (847)
Q Consensus 592 ~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~---------------------------~h~~~V~~l 644 (847)
++.|.+|+.+..+ +++.+|.|++||+.++..++.+..|. .|.-.+.+.
T Consensus 3 v~pG~~De~y~f~-----Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 3 VAPGELDEYYGFW-----SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp CCTTCCCSEEEEE-----ECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEE
T ss_pred CCCCCCCCEEEEE-----eCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCccee
Confidence 4556666655544 46678889999988775444433221 133445666
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCE--EEEEeCCC-----------------c
Q 003106 645 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPR--LATSSFDK-----------------T 703 (847)
Q Consensus 645 ~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~--Lasgs~Dg-----------------~ 703 (847)
.++|||++|++.. .+..|.+||++++++...+. .+...+..++|+|+++. +++.+.+. .
T Consensus 78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 78 DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 6788999987665 67899999999999888775 35678999999999984 44444332 2
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCC--------------------------------------
Q 003106 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-------------------------------------- 745 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~D-------------------------------------- 745 (847)
+..+|..+ ......+... ..+..+.|+|+|+++++++...
T Consensus 158 ~~~iD~~t-~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~ 235 (441)
T d1qnia2 158 FTAIDAET-MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235 (441)
T ss_dssp EEEEETTT-CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEeecCcc-ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence 35578877 4444444332 4578899999999888776432
Q ss_pred --CcEEEEECCCCceEEEEeeCCceEEEEEe--cCCCEEEEEcCCCcEEEEcCCcccceeeeccc----ccCCCCccccc
Q 003106 746 --GEIRYWSINNGSCTRVFKVESFCCWCVNA--MNRPCLWDKLDAGDIQISDSLFINANIFCGLG----WYGSDEIPAPS 817 (847)
Q Consensus 746 --g~V~iWD~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~ 817 (847)
+.+.|++....+.+..+...... ..+.. ++...+.++..++.+.+||.......+..... ..+........
T Consensus 236 ~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp 314 (441)
T d1qnia2 236 DSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP 314 (441)
T ss_dssp TCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred CCCcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence 33444444444555555544332 22222 33333446778889999995432111000000 00000000001
Q ss_pred cccccccCCCcEEEEEeCCCeEEEEEcc
Q 003106 818 WKVSCRSCRECCLYTGCGDSSLSSFIAG 845 (847)
Q Consensus 818 w~~~~~~~~~~~l~sGs~DG~V~vW~~g 845 (847)
.+..+.. ++..+.+...|..|..|+++
T Consensus 315 lh~~fd~-~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 315 LHTTFDG-RGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred ccceecC-CceEEEcccccceEEEeccc
Confidence 1112222 45678888899999999864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=1.3e-08 Score=113.17 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=99.9
Q ss_pred CCcEEEEeccCCceeeEe--EEeecCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEccCCCC
Q 003106 614 DAGGRGMDVSQGFSFKEA--NSVRASTSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSL 682 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~---------Dg~V~vwd~~~~~~~~~l~~h~~~ 682 (847)
++.+.+||+.++.....+ .++..|...|.++.|||||++|+.++. ++.+.|||+.+++. ..+..|...
T Consensus 35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~ 113 (470)
T d2bgra1 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNN 113 (470)
T ss_dssp SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTT
T ss_pred CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcc
Confidence 456889999988433222 234566788999999999999998853 56789999998775 457788999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEecc------------------CCCCeEEEEEecCCCeEEEEEeC
Q 003106 683 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 683 I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~------------------h~~~V~sl~fsp~g~~ll~s~s~ 744 (847)
+..+.|+|||+.||... |+.|++|+..+ +..+..... ..+....+.|+|||++++.....
T Consensus 114 ~~~~~~SPDG~~ia~~~-~~~l~~~~~~~-g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPN-LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTT-SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ccccccccCcceeeEee-cccceEEECCC-CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 99999999999999865 77899999987 444333221 22335668899999977655444
Q ss_pred CCcEEEEEC
Q 003106 745 DGEIRYWSI 753 (847)
Q Consensus 745 Dg~V~iWD~ 753 (847)
+..|..|++
T Consensus 192 ~~~v~~~~~ 200 (470)
T d2bgra1 192 DTEVPLIEY 200 (470)
T ss_dssp CTTCCEEEE
T ss_pred CCcCceEEE
Confidence 444555543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=6.4e-06 Score=84.56 Aligned_cols=229 Identities=9% Similarity=0.115 Sum_probs=142.7
Q ss_pred ceEEEecCCCeEeecCCC---eEEeCCCCchhhccccccc-cCCCCCceEEeeecCC------CCCCCCcEEEEeccCCc
Q 003106 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVE-DGSLDDNVESFLSHDD------TDPRDAGGRGMDVSQGF 626 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~~~~---~iWD~~~~~~~~~~~~~~~-~g~~d~~v~~~~s~d~------t~~~d~~v~vwd~~~~~ 626 (847)
..+++++||+..+++..+ ++||.+ +++...+..... .+........+...+. .......+.+++....
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~- 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ- 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc-
Confidence 567888999877775433 456644 333332221110 0100011111111110 1222334555554322
Q ss_pred eeeEeEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--ccCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003106 627 SFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKT 703 (847)
Q Consensus 627 ~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~h~~~I~~v~fsp~~~~Lasgs~Dg~ 703 (847)
....+ ........++++.++|.++++....+.+.+++.+ ++.+.++ ..+......+++.++++.+++....+.
T Consensus 104 ---~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 104 ---FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp ---EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred ---ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 22233 2345667899999999988888878888888865 5666665 345667889999999988888888899
Q ss_pred EEEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCC--ceEEEEEecCCC
Q 003106 704 VRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMNRP 778 (847)
Q Consensus 704 V~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~~~ 778 (847)
|++||.. +..+.++. +.......|+++++|. ++++-. .++.|.+||. +|+.+.++.... ...+.++...+.
T Consensus 180 V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG 255 (279)
T d1q7fa_ 180 VKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG 255 (279)
T ss_dssp EEEEETT--CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred eeeeecC--CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence 9999986 45566663 3556688999999987 555544 3457999984 588777775443 345666666666
Q ss_pred EEEEEcCCCcEEEEcCC
Q 003106 779 CLWDKLDAGDIQISDSL 795 (847)
Q Consensus 779 ~l~~~~~~g~i~i~d~~ 795 (847)
.++....+..|++|...
T Consensus 256 ~l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 256 SVVLASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEEETTTEEEEEECS
T ss_pred cEEEEeCCCeEEEEEee
Confidence 67766677778887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.58 E-value=5.5e-06 Score=86.07 Aligned_cols=163 Identities=9% Similarity=-0.008 Sum_probs=114.3
Q ss_pred eEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 629 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
+.+..+.. ...+..+++++||+++++...+++|+.||.+. + ...+......+.+++|+++|+++++...++.+.+|+
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence 34444432 23588999999999999999999998888663 3 334445667899999999999888888888888888
Q ss_pred CCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeC----------CceEEEEEecC
Q 003106 709 ADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVE----------SFCCWCVNAMN 776 (847)
Q Consensus 709 ~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~----------~~~v~~~~~~~ 776 (847)
..........+. .....+..+++.+++. ++++.+.++.|..+|...+.....+... ......+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~ 174 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG 174 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred ecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence 765333333332 3445688999999975 6667778889999999877544333211 12334555566
Q ss_pred CCEEEEEcCCCcEEEEcCC
Q 003106 777 RPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 777 ~~~l~~~~~~g~i~i~d~~ 795 (847)
...++.....+.|..++..
T Consensus 175 ~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp TEEEEEETTTTEEEEEEBC
T ss_pred CceeeecCCCCeEEecccc
Confidence 6666677777777777643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.56 E-value=1.4e-07 Score=104.73 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=92.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc-----CCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 003106 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRVWD 708 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~I~~v~fsp~~~~Lasgs~---------Dg~V~iWD 708 (847)
.+.|.+|+.++.. .|+.|.+||+.+++....+.. |...|.++.|+||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4778999987764 578899999999988765543 4577999999999999988753 56789999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe
Q 003106 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 709 ~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~ 763 (847)
+.+ +. +..+..|...+..+.|+|||+.++. . .|+.|.+|++.+++.+....
T Consensus 99 ~~~-~~-~~~l~~~~~~~~~~~~SPDG~~ia~-~-~~~~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 99 LNK-RQ-LITEERIPNNTQWVTWSPVGHKLAY-V-WNNDIYVKIEPNLPSYRITW 149 (470)
T ss_dssp TTT-TE-ECCSSCCCTTEEEEEECSSTTCEEE-E-ETTEEEEESSTTSCCEECCS
T ss_pred CCC-Cc-ccccccCCccccccccccCcceeeE-e-ecccceEEECCCCceeeeee
Confidence 997 43 5667888999999999999997664 3 47799999999987665443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.46 E-value=1.8e-05 Score=84.57 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceEE--Ee--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 680 SSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs~-Dg~V~iWD~~~~~~~~~--~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
...+.++.|+|+|++|++++. ...|++|++...+.... .+ .........++|+|+++.+++++..+++|.+||+.
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 345789999999998888764 55789988765443321 11 22356789999999999888888889999999997
Q ss_pred CCc
Q 003106 755 NGS 757 (847)
Q Consensus 755 ~~~ 757 (847)
.+.
T Consensus 224 ~~~ 226 (365)
T d1jofa_ 224 PAT 226 (365)
T ss_dssp TTT
T ss_pred CCC
Confidence 664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.41 E-value=7.8e-06 Score=87.50 Aligned_cols=121 Identities=8% Similarity=0.007 Sum_probs=83.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEc-------------------cCCCCeEEEEEcCCCCEEE
Q 003106 637 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLE-------------------EHSSLITDVRFSPSMPRLA 696 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~-------------------~h~~~I~~v~fsp~~~~La 696 (847)
.....+.++|+||++++++.. .+++|.+||++..+...... .+......|.|+|+|++|+
T Consensus 191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly 270 (365)
T d1jofa_ 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence 356788999999999886655 57899999987654322211 1122356789999999998
Q ss_pred EEeC-C-----CcEEEEECCCCCceEEEe-----ccCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCc
Q 003106 697 TSSF-D-----KTVRVWDADNPGYSLRTF-----MGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGS 757 (847)
Q Consensus 697 sgs~-D-----g~V~iWD~~~~~~~~~~~-----~~h~~~V~sl~fsp-~g~~ll~s~s~Dg~V~iWD~~~~~ 757 (847)
++.. + +.|.+|++...+...... ........+++|+| +|+++++++..++.|.||+++...
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 7742 2 238888887644332221 12334567799998 788888788889999999886553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=2.8e-05 Score=78.72 Aligned_cols=154 Identities=6% Similarity=-0.060 Sum_probs=98.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEE
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~ 717 (847)
.....+|++.++++++++-..+..+.+++............-.....+|+++++++.+++...++.|..+|.+. .....
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~-~~~~~ 175 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVV 175 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT-CCEEE
T ss_pred eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc-ceeee
Confidence 35678999999999888776677788887665433222222234567899999999888888888999999876 33222
Q ss_pred EeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE-EcCCCcEEEEc
Q 003106 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD-KLDAGDIQISD 793 (847)
Q Consensus 718 ~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~~g~i~i~d 793 (847)
...........|+++++|. |+++....+.|..++.............-.....++++....||. -..++.|..++
T Consensus 176 ~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 176 LPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 2234556688999999976 676777788888888765432222122223344555554333333 33444455444
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=0.00053 Score=68.31 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=101.8
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEccCCCCeEEEEEcCCC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 692 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~ 692 (847)
.|.+.|.... ....+..+...+..-+|||||+.||....+. .+.+.+...+.. ..+..+...+.+..|+|+|
T Consensus 20 ~l~i~d~dG~----~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg 94 (269)
T d2hqsa1 20 ELRVSDYDGY----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDG 94 (269)
T ss_dssp EEEEEETTSC----SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTS
T ss_pred EEEEEcCCCC----CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCC
Confidence 4566666543 3333344567788999999999999776543 466677766555 3455677888999999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcE--EEEECCCCceEEEEeeCCceE
Q 003106 693 PRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI--RYWSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 693 ~~Lasgs~-Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V--~iWD~~~~~~~~~~~~~~~~v 769 (847)
+.|+.... ++...++.......................+++++..++++...+|.. .++++..+..... .......
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~~~~~~ 173 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TWEGSQN 173 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CCSSSEE
T ss_pred CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee-ecccccc
Confidence 98876653 444333333322333344444555566778888888787777767654 4445555543322 2223322
Q ss_pred EEEE--ecCCCEEEEEcCCCcEEEEc
Q 003106 770 WCVN--AMNRPCLWDKLDAGDIQISD 793 (847)
Q Consensus 770 ~~~~--~~~~~~l~~~~~~g~i~i~d 793 (847)
.... .+....++.....+...++.
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~i~~ 199 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSNGGQQHIAK 199 (269)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred cccccccccceeEEEeecCCceeeeE
Confidence 2222 23333444555555544443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.19 E-value=0.00012 Score=75.62 Aligned_cols=156 Identities=13% Similarity=0.016 Sum_probs=100.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEc--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 003106 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~--~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~ 713 (847)
....+.+++|++||+++++...++.+.+|+..... ....+. .....+..+++.++++++++.+.++.|..+|.....
T Consensus 66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence 44568999999999999998888888888865322 222221 344568999999999888888889999999988632
Q ss_pred ceEEEec---------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEE--eeCCceEEEEEecCCCEEEE
Q 003106 714 YSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KVESFCCWCVNAMNRPCLWD 782 (847)
Q Consensus 714 ~~~~~~~---------~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~~ 782 (847)
..+.... .....+..+.++ +..++++.+.++.|..+|+......... .........+.++.+..+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 146 GSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred ceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence 2222211 112235566665 4567778888899999998764322111 11122233455555556665
Q ss_pred Ec-CCCcEEEEcC
Q 003106 783 KL-DAGDIQISDS 794 (847)
Q Consensus 783 ~~-~~g~i~i~d~ 794 (847)
.. .++.|..++.
T Consensus 224 a~~~~~~V~~i~p 236 (302)
T d2p4oa1 224 ATHIYNSVVRIAP 236 (302)
T ss_dssp ECBTTCCEEEECT
T ss_pred EEcCCCcEEEECC
Confidence 54 4666777754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.15 E-value=0.00065 Score=70.42 Aligned_cols=195 Identities=9% Similarity=-0.005 Sum_probs=114.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCC----CCeEEEEEcCCCCEEEEEeC---------------
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSSF--------------- 700 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~----~~I~~v~fsp~~~~Lasgs~--------------- 700 (847)
.-..++|.+++++|+++...+.|.++|.+............ ...++++|.++|++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence 45789999999988888877789999987544322111111 13578999999987766421
Q ss_pred CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCC----eEEEEEeCCCcEEEEECCCCceEEE---Ee---e-CCceE
Q 003106 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD----DLICSCDGDGEIRYWSINNGSCTRV---FK---V-ESFCC 769 (847)
Q Consensus 701 Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~----~ll~s~s~Dg~V~iWD~~~~~~~~~---~~---~-~~~~v 769 (847)
+|.|..++.+ +...... ..-...+.|+|+++++ .++++-+..+.|..||+.....+.. +. . .....
T Consensus 152 ~G~v~~~~~d--g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 152 FGSIYCFTTD--GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp CEEEEEECTT--SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred CceEEEEeec--CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence 2334444433 3333322 3334567899998865 4666667788999998865433321 11 1 12234
Q ss_pred EEEEecCCCEEEEEc-CCCcEEEEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEc
Q 003106 770 WCVNAMNRPCLWDKL-DAGDIQISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIA 844 (847)
Q Consensus 770 ~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~ 844 (847)
..++++....||... ..+.|.+|+............ .....+. +.+.+....++++.+.+|.|..+++
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t~----~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSN----LHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEE----EEECTTSSEEEEEETTTTEEEEEEC
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEEE----EEEeCCCCEEEEEECCCCcEEEEEC
Confidence 556667667777654 567799988542221111111 1111222 2333422347788888898887775
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.08 E-value=0.0007 Score=70.26 Aligned_cols=177 Identities=8% Similarity=0.025 Sum_probs=106.2
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEcc--CCCCeEEEE
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVR 687 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~V~vwd~~~~~~~~~l~~--h~~~I~~v~ 687 (847)
.+.|..|+..++ .....+.........|+|++||+++++...+ +.|...+.........+.. -...+..++
T Consensus 60 ~g~I~ri~p~g~---~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~ 136 (319)
T d2dg1a1 60 EGNIFKINPETK---EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV 136 (319)
T ss_dssp TCEEEEECTTTC---CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred CCEEEEEECCCC---eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCccee
Confidence 344555555544 1222333455678899999999988876443 2344445554444433322 123478899
Q ss_pred EcCCCCEEEEEeCC------CcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-ceEE
Q 003106 688 FSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTR 760 (847)
Q Consensus 688 fsp~~~~Lasgs~D------g~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~-~~~~ 760 (847)
+.++|++.++.... +.|..++.+. ..+..+...-...+.|+|+++++.++++-+..+.|..||+... ....
T Consensus 137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~ 214 (319)
T d2dg1a1 137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 214 (319)
T ss_dssp ECTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred EEeccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceec
Confidence 99999866554321 2355555443 3344333333457889999999888878888899999998643 2111
Q ss_pred EE-------eeCCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 761 VF-------KVESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 761 ~~-------~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
.. .........++++....||... ..+.|.+++..
T Consensus 215 ~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 215 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred cccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 11 1112234556677666677654 56789998854
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=0.00012 Score=73.66 Aligned_cols=192 Identities=5% Similarity=-0.012 Sum_probs=115.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
....|+++++++++++....+.|++++..+...+..+. ......+|++.++++++++-..+..+.+++... .......
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~-~~~~~~~ 135 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLP 135 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC-SSCEECC
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeecccccccccccccc-ceeeeee
Confidence 35678999999988877766677776655554443332 235578999999998777766677788877765 2222211
Q ss_pred ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEE-EcCCCcEEEEcCCccc
Q 003106 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWD-KLDAGDIQISDSLFIN 798 (847)
Q Consensus 720 ~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~~g~i~i~d~~~~~ 798 (847)
........+|++++++. ++++...++.|..+|...................++++....||. ....+.|..++.....
T Consensus 136 ~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~ 214 (260)
T d1rwia_ 136 FTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 214 (260)
T ss_dssp CCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred ecccCCcceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence 22234567899999886 666777788999999876544333223344456677665555554 4455667767643222
Q ss_pred ceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEE
Q 003106 799 ANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSF 842 (847)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW 842 (847)
...+...+ . .....+...+ ++.++++-..++.|+.+
T Consensus 215 ~~~~~~~~---~----~~P~~i~~d~-~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 215 STVLPFTG---L----NTPLAVAVDS-DRTVYVADRGNDRVVKL 250 (260)
T ss_dssp CEECCCCS---C----CCEEEEEECT-TCCEEEEEGGGTEEEEE
T ss_pred EEEEccCC---C----CCeEEEEEeC-CCCEEEEECCCCEEEEE
Confidence 21111111 0 1122333333 45677776677766544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.01 E-value=0.0015 Score=66.00 Aligned_cols=194 Identities=9% Similarity=0.006 Sum_probs=121.0
Q ss_pred CEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCceeEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceE
Q 003106 640 KVICCHFSSDGK-LLATG-GHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 640 ~V~~l~fspdg~-~Lasg-s~Dg~V~vwd~~~~~~~~~l~-~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
....+++..+.. ++++. +.++.|.+++.. ++....+. .......++++.+++.++++....+.+.++|.. +..+
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~ 147 (279)
T d1q7fa_ 71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVL 147 (279)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred ccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC--Ccee
Confidence 345666666544 44433 344577777754 66666663 344667899999999988887778888888865 4555
Q ss_pred EEe--ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEee--CCceEEEEEecCCCEEEEEc--CCCcEE
Q 003106 717 RTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKV--ESFCCWCVNAMNRPCLWDKL--DAGDIQ 790 (847)
Q Consensus 717 ~~~--~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~--~~g~i~ 790 (847)
..+ ..+......+++.+++. ++++....+.|++||.. ++.+..+.. .......++++....+|... .++.|.
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~ 225 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLT 225 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred ecccccccccccceeeecccee-EEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEE
Confidence 655 34566788999998875 66677788999999975 566666643 22345666666555555443 344688
Q ss_pred EEcCCcccceeeecccccCCCCccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 791 ISDSLFINANIFCGLGWYGSDEIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 791 i~d~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+++... .+...+.. .......|.++..+ ++. |++.+.+..|++|+..+
T Consensus 226 ~f~~~G---~~~~~~~~---~~~~~~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 226 IFTQDG---QLISALES---KVKHAQCFDVALMD-DGS-VVLASKDYRLYIYRYVQ 273 (279)
T ss_dssp EECTTS---CEEEEEEE---SSCCSCEEEEEEET-TTE-EEEEETTTEEEEEECSC
T ss_pred EECCCC---CEEEEEeC---CCCCCCEeEEEEeC-CCc-EEEEeCCCeEEEEEeee
Confidence 887432 11111111 01112345555444 444 55567899999998764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.99 E-value=0.00018 Score=74.77 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=83.9
Q ss_pred CEEEEEEcCCCC-----EEEEEeCCCcEEEEECCCCceeE------EEcc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003106 640 KVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKT------NLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (847)
Q Consensus 640 ~V~~l~fspdg~-----~Lasgs~Dg~V~vwd~~~~~~~~------~l~~-h~~~I~~v~fsp~~~~Lasgs~Dg~V~iW 707 (847)
.-+.++|+++++ ++++-+..+.|..||+.....+. .+.. +....-.|++..+|++.++....+.|.+|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 456789998765 44455677889999876332221 1221 22345679999999987877788999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 708 D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
|.+. +..+..+......+++|+|.++++.|+++.+.+|.|..+|+..
T Consensus 253 dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9886 5555666656677899999999988888888888888888753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00022 Score=78.58 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-cCCCCe-------
Q 003106 612 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLI------- 683 (847)
Q Consensus 612 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~I------- 683 (847)
+..+...++|+.++ ..+.+.........+....|||||+.||... ++.|.+.+..++..++... +....|
T Consensus 88 s~~~~~~i~d~~~~-~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~ 165 (465)
T d1xfda1 88 SYTGYYVLSKIPHG-DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (465)
T ss_dssp CCCSEEEEEESSSC-CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred eccccEEEEEccCC-ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccch
Confidence 34567889999987 4455544444455677789999999998876 6789999887766554432 222212
Q ss_pred ----------EEEEEcCCCCEEEEEeC-CCcEEEE---------------------------------ECCCCCceEEEe
Q 003106 684 ----------TDVRFSPSMPRLATSSF-DKTVRVW---------------------------------DADNPGYSLRTF 719 (847)
Q Consensus 684 ----------~~v~fsp~~~~Lasgs~-Dg~V~iW---------------------------------D~~~~~~~~~~~ 719 (847)
..+.|||||++||.... +..|..| |+.+....+...
T Consensus 166 vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~ 245 (465)
T d1xfda1 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (465)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred hhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEe
Confidence 46789999999987653 3334433 333211111111
Q ss_pred -----ccCCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCceEEEEee
Q 003106 720 -----MGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRVFKV 764 (847)
Q Consensus 720 -----~~h~~~V~sl~fsp~g~~ll~s~s~D---g~V~iWD~~~~~~~~~~~~ 764 (847)
......+..+.|.++++.++.....+ ..|.++|..++++...+..
T Consensus 246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e 298 (465)
T d1xfda1 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (465)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred ccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence 01122367789999987555444444 3588899999988776654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.00096 Score=66.34 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=75.7
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEE--EECCCCceeEEEccCCCCeEEEEEcCCCCEEEE-EeCCCc--EEE
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVL--WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VRV 706 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~v--wd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Las-gs~Dg~--V~i 706 (847)
.+..+...+.+..|+|||+.|+.... ++...+ +....... ..............+++++..++. ...++. |.+
T Consensus 77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 155 (269)
T d2hqsa1 77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 155 (269)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEee
Confidence 44557788899999999999887664 333333 33333332 333344455566778888776544 445555 455
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 707 WD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
+++.. .....+..+........|+|++..++++...++...+|...
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~ 201 (269)
T d2hqsa1 156 VNING--GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 201 (269)
T ss_dssp EETTS--SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eeccc--ccceeeecccccccccccccccceeEEEeecCCceeeeEee
Confidence 55554 34445555667788899999999888777766666666444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.87 E-value=0.0015 Score=67.59 Aligned_cols=157 Identities=9% Similarity=0.011 Sum_probs=95.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC--Cc--EEEEECC
Q 003106 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KT--VRVWDAD 710 (847)
Q Consensus 635 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D--g~--V~iWD~~ 710 (847)
......+..++|.++|+++++-..++.|+.||.++.+....+.........|+|+++|+++++...+ .. |...|..
T Consensus 36 ~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 36 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred ccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 3344556789999999988887788999999988777666666666778999999999877765432 23 4444444
Q ss_pred CCCceEEEecc--CCCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCceEEEEeeCCceEEEEEecCC-CEE-
Q 003106 711 NPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNR-PCL- 780 (847)
Q Consensus 711 ~~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~s~s~------Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~-~~l- 780 (847)
. ......... -...+..+++.++|. ++++... .+.|..++...+.. ..+...-.....+.++.+ ..+
T Consensus 116 ~-~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 116 G-DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp S-CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEE
T ss_pred C-ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEE
Confidence 3 222222221 133577899999987 5545322 12355555544333 322222223344555433 334
Q ss_pred EEEcCCCcEEEEcC
Q 003106 781 WDKLDAGDIQISDS 794 (847)
Q Consensus 781 ~~~~~~g~i~i~d~ 794 (847)
++....+.|..|+.
T Consensus 193 vad~~~~~I~~~d~ 206 (319)
T d2dg1a1 193 VTETTANRLHRIAL 206 (319)
T ss_dssp EEEGGGTEEEEEEE
T ss_pred EecccCCceEEEEE
Confidence 45556677887763
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.81 E-value=0.0024 Score=65.34 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=113.8
Q ss_pred CCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcc----CCCCeEEEEEc
Q 003106 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFS 689 (847)
Q Consensus 614 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~----h~~~I~~v~fs 689 (847)
.+.|..||..++ .. ..+ .....+.++++.++|+++++ +.+ -|.++|..+++....... ....++++.+.
T Consensus 39 ~~~I~r~d~~~g-~~---~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd 111 (295)
T d2ghsa1 39 ERELHELHLASG-RK---TVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMH 111 (295)
T ss_dssp GTEEEEEETTTT-EE---EEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCC-eE---EEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEEC
Confidence 356677777766 21 112 23457889999999877765 444 588999998876543321 12358899999
Q ss_pred CCCCEEEEEeC----CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC------ceE
Q 003106 690 PSMPRLATSSF----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG------SCT 759 (847)
Q Consensus 690 p~~~~Lasgs~----Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~------~~~ 759 (847)
++|++.++... .+.-.+|.+.. +.....+. .-.....++|+++++.++++-+..+.|..|++... +..
T Consensus 112 ~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 112 PSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CCCCEEEEeccccccccceeEeeecC-CcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence 99986665442 23456676665 44444333 33456889999999988888888899999987532 111
Q ss_pred E--EEeeCCceEEEEEecCCCEEEEEc-CCCcEEEEcCC
Q 003106 760 R--VFKVESFCCWCVNAMNRPCLWDKL-DAGDIQISDSL 795 (847)
Q Consensus 760 ~--~~~~~~~~v~~~~~~~~~~l~~~~-~~g~i~i~d~~ 795 (847)
. .+.........+..+....+|.+. ..+.|..|+..
T Consensus 190 ~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 190 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 1 122334556777888888888776 56678888853
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=0.0013 Score=67.34 Aligned_cols=184 Identities=14% Similarity=0.100 Sum_probs=113.5
Q ss_pred cceEEEecCCCeEeecCCC-eEEeCCCCchhhccc-------cccccCCCCCceEEeeecCCCCCCCCcEEEEeccCCce
Q 003106 556 KPLMMFGTDGAGTLTSPSN-QLWDDKDLELRADMD-------RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 627 (847)
Q Consensus 556 ~~~v~~s~dG~~~~~~~~~-~iWD~~~~~~~~~~~-------~~~~~g~~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~ 627 (847)
...+.+.+||+.+++.... .++|..+++...... ....++..+..-.+|+.........+...+|.+..+ .
T Consensus 61 ~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~ 139 (295)
T d2ghsa1 61 GSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-K 139 (295)
T ss_dssp EEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-E
T ss_pred cEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-c
Confidence 4567788888877664432 567777776532211 011222333334445443333334455667777666 2
Q ss_pred eeEeEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCC------ce--eEEEccCCCCeEEEEEcCCCCEEEEE
Q 003106 628 FKEANSVRASTSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTL------KS--KTNLEEHSSLITDVRFSPSMPRLATS 698 (847)
Q Consensus 628 ~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~V~vwd~~~~------~~--~~~l~~h~~~I~~v~fsp~~~~Lasg 698 (847)
...+. ..-..-+.++|+++++.|+. -+..+.|..|+++.. +. ...+.+.......+++..+|++.++.
T Consensus 140 ~~~~~---~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~ 216 (295)
T d2ghsa1 140 VTKLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 216 (295)
T ss_dssp EEEEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred EEEEe---eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence 22221 22335678999999986654 456788999987521 11 11223345567899999999877776
Q ss_pred eCCCcEEEEECCCCCceEEEeccCCCCeEEEEEe-cCCCeEEEEEeCC
Q 003106 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGD 745 (847)
Q Consensus 699 s~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~s~s~D 745 (847)
-..+.|.+||.+ ++.+..+.--...+++++|- ++.+.|++|...+
T Consensus 217 ~~~g~V~~~dp~--G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 217 WGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp ETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred eCCCceEEecCC--CcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 678889999965 56777776555679999996 6777788876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=8.7e-05 Score=81.85 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=89.7
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceeEEE--ccCCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG---------HDKKAVLWHTDTLKSKTNL--EEHSS 681 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs---------~Dg~V~vwd~~~~~~~~~l--~~h~~ 681 (847)
.++.+.+||+.++.....+..-.-....+....||||+++|+... ..+.+.|||+.++...... .....
T Consensus 35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~ 114 (465)
T d1xfda1 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (465)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence 345688888887733222211112234677888999999988764 3567899999987654322 22344
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCCCCe-----------------EEEEEecCCCeEEEEEeC
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-----------------MSLDFHPNKDDLICSCDG 744 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~~~V-----------------~sl~fsp~g~~ll~s~s~ 744 (847)
.+....|||||+.||-.. ++.|.+.+.........+..+....| ..+.|+|||++|++.--.
T Consensus 115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D 193 (465)
T d1xfda1 115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (465)
T ss_dssp CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence 566789999999998876 67788888876333333333322222 467899999987765545
Q ss_pred CCcEEEEEC
Q 003106 745 DGEIRYWSI 753 (847)
Q Consensus 745 Dg~V~iWD~ 753 (847)
+..|..|.+
T Consensus 194 ~s~V~~~~~ 202 (465)
T d1xfda1 194 DSRVPIMEL 202 (465)
T ss_dssp CTTSCEEEE
T ss_pred ccccceeec
Confidence 555555443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.0099 Score=59.46 Aligned_cols=178 Identities=8% Similarity=0.026 Sum_probs=115.9
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCC
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~ 691 (847)
..+.|...++..+. ....+..-...+.+|++..-++.|+.+ ...+.|.+.+++.......+...-..+..|+++|.
T Consensus 56 ~~~~I~~~~l~g~~---~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~ 132 (263)
T d1npea_ 56 SEPSIGRASLHGGE---PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132 (263)
T ss_dssp TTTEEEEEESSSCC---CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred CCCeEEEEEcccCC---cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecc
Confidence 34567777776542 122233334578999998756666544 55679999999865543334444467899999998
Q ss_pred CCEEEEEeCC-CcEEEE--ECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCce
Q 003106 692 MPRLATSSFD-KTVRVW--DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 692 ~~~Lasgs~D-g~V~iW--D~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
..+|+....+ +..+|| +++. ..........-....+|++++.+++++++-...+.|...|+....+...+.... .
T Consensus 133 ~g~ly~t~~~~~~~~I~r~~~dG-~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~ 210 (263)
T d1npea_ 133 RGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-Y 210 (263)
T ss_dssp TTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-S
T ss_pred cCcEEEeecCCCCcEEEEecCCC-CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-C
Confidence 8877655433 344455 4543 222222223335678999998888777676677899999998666555554433 3
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEcCC
Q 003106 769 CWCVNAMNRPCLWDKLDAGDIQISDSL 795 (847)
Q Consensus 769 v~~~~~~~~~~l~~~~~~g~i~i~d~~ 795 (847)
...++.++...+|+-...+.|...+..
T Consensus 211 P~~lav~~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 211 PFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred cEEEEEECCEEEEEECCCCEEEEEECC
Confidence 456777777778888888888888765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.022 Score=56.92 Aligned_cols=157 Identities=10% Similarity=0.032 Sum_probs=107.7
Q ss_pred CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCC
Q 003106 637 STSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVRVWDADNPG 713 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~--Dg~V~iWD~~~~~ 713 (847)
....+.+|++...++.|+.+ ...++|.+.+++.......+.........|+++|...+|+.... .+.|...+++.
T Consensus 75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-- 152 (266)
T d1ijqa1 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-- 152 (266)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence 34567788988756555554 45678999999866655555555667899999997777765543 34566666654
Q ss_pred ceEEEe-ccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC--ceEEEEEecCCCEEEEEcCCCcEE
Q 003106 714 YSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES--FCCWCVNAMNRPCLWDKLDAGDIQ 790 (847)
Q Consensus 714 ~~~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~~g~i~ 790 (847)
.....+ ...-....+|++++.+++++.+-...+.|...|+....+...+.... .....++...+..+|+-...+.|.
T Consensus 153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 232 (266)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEE
T ss_pred CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEE
Confidence 333333 33345678999999888887776778899999997665554444332 235667777777888877778877
Q ss_pred EEcCC
Q 003106 791 ISDSL 795 (847)
Q Consensus 791 i~d~~ 795 (847)
..+..
T Consensus 233 ~~~~~ 237 (266)
T d1ijqa1 233 SANRL 237 (266)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 76644
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.058 Score=53.61 Aligned_cols=176 Identities=10% Similarity=-0.010 Sum_probs=109.5
Q ss_pred cEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC----ceeEEEccCCCCeEEEEEcC
Q 003106 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSP 690 (847)
Q Consensus 616 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~----~~~~~l~~h~~~I~~v~fsp 690 (847)
.|+..++.+. .. ..+......+.+|+|.+.+++|+-.. .++.|+..+++.. .....+......+.+|++.+
T Consensus 11 ~I~~~~l~~~-~~---~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 11 EVRKMTLDRS-EY---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp SEEEEETTSC-CC---EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred eEEEEECCCC-cc---eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence 4677777654 22 22233556788999999777776664 4566777776532 12222333345577899988
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCceEEEEeeCCce
Q 003106 691 SMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKVESFC 768 (847)
Q Consensus 691 ~~~~Lasgs-~Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s-~Dg~V~iWD~~~~~~~~~~~~~~~~ 768 (847)
.+..|+.+. ..++|.+.+++. ......+.........|+++|....++.+.. ..+.|...++........+...-..
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~ 165 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 165 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ccceEEEEecCCCEEEeEecCC-ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce
Confidence 777776654 567899999986 4444444555667899999998777775543 3356777777655444444333334
Q ss_pred EEEEEec--CCCEEEEEcCCCcEEEEcCCc
Q 003106 769 CWCVNAM--NRPCLWDKLDAGDIQISDSLF 796 (847)
Q Consensus 769 v~~~~~~--~~~~l~~~~~~g~i~i~d~~~ 796 (847)
...++.+ ....+|+-...+.|...+...
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence 4555544 455777777778888777543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.49 E-value=0.0045 Score=61.32 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=45.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCceeEEEc------cCCCCeEEEEEcCCCCEEEEEe
Q 003106 633 SVRASTSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSS 699 (847)
Q Consensus 633 ~l~~h~~~V~~l~fspdg~~Lasgs~-Dg-----~V~vwd~~~~~~~~~l~------~h~~~I~~v~fsp~~~~Lasgs 699 (847)
.+..+.+.+...+|||||+.||.... ++ .|.++++.+++...... .....+..+.|+|+++.|+...
T Consensus 35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 34556777889999999999986543 22 37777877776543211 1223456788999999887653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.37 E-value=0.044 Score=54.49 Aligned_cols=162 Identities=6% Similarity=-0.082 Sum_probs=105.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 003106 634 VRASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADN 711 (847)
Q Consensus 634 l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~ 711 (847)
+..+...|.+|+|....++|+-+ ..++.|+..+++.......+......+.+|++..-+..|+.+. ..+.|.+.+++.
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 33444568889999877766665 4567899999886655555544446789999988777776554 577899999986
Q ss_pred CCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCceEEEEeeCCceEEEEEec--CCCEEEEEcCCC
Q 003106 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRVFKVESFCCWCVNAM--NRPCLWDKLDAG 787 (847)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iW--D~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~~g 787 (847)
..+...+......+..|+++|....++.+-...+..+|| ++............-.....++.+ ....+|+-...+
T Consensus 111 -~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~ 189 (263)
T d1npea_ 111 -TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (263)
T ss_dssp -CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred -ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence 333333333446789999999988777665433343444 555444333333333344555554 445668877788
Q ss_pred cEEEEcCCc
Q 003106 788 DIQISDSLF 796 (847)
Q Consensus 788 ~i~i~d~~~ 796 (847)
.|...+...
T Consensus 190 ~I~~~~~~g 198 (263)
T d1npea_ 190 RAECLNPAQ 198 (263)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCC
Confidence 888877553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.70 E-value=0.18 Score=50.17 Aligned_cols=208 Identities=10% Similarity=0.153 Sum_probs=130.3
Q ss_pred CCeEEeCCCCchhhccccccccCCCCCceEEeeecCC---CCCCCCcEEEEeccCCceeeEeEEeecCC----CCEEEEE
Q 003106 573 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRAST----SKVICCH 645 (847)
Q Consensus 573 ~~~iWD~~~~~~~~~~~~~~~~g~~d~~v~~~~s~d~---t~~~d~~v~vwd~~~~~~~~~~~~l~~h~----~~V~~l~ 645 (847)
...++|+++-.....+ .+...|..|..-+. .--.+..|.-|+++... .+.+.+..|. .-|..-+
T Consensus 84 ~LQiFnletK~klks~-------~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s--~P~k~fdR~~~L~~~QIInY~ 154 (327)
T d1utca2 84 TLQIFNIEMKSKMKAH-------TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINYR 154 (327)
T ss_dssp EEEEEETTTTEEEEEE-------ECSSCCCEEEESSSSEEEEECSSEEEEEESSSSC--CCEEEEECCGGGTTCEEEEEE
T ss_pred eEEEEehhHhhhhceE-------EcCCCcEEEEecCCCEEEEEcCCceEEEcccCCC--CchhhhhhcccccCceEEEEE
Confidence 3488988876544432 13344555533333 23356678999986542 4555555553 4688888
Q ss_pred EcCCCCEEEEEe---C----CCcEEEEECCCCceeEEEccCCCCeEEEEEcCCC---CEEEEEe---CCCcEEEEECCCC
Q 003106 646 FSSDGKLLATGG---H----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSS---FDKTVRVWDADNP 712 (847)
Q Consensus 646 fspdg~~Lasgs---~----Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~---~~Lasgs---~Dg~V~iWD~~~~ 712 (847)
.++|+++++..| . .|.+-+|.++. +.-..+++|......+.+.-+. ..|+.+. ..++++|-++...
T Consensus 155 ~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 155 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred ECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 889999877654 2 36778999874 4446788887766665554322 2333332 2367999998763
Q ss_pred Cc--------eEEEec---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCCceEEEEEec-CCCEE
Q 003106 713 GY--------SLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKVESFCCWCVNAM-NRPCL 780 (847)
Q Consensus 713 ~~--------~~~~~~---~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 780 (847)
.. .+..+. .-.+-..++..++.-. +++..+.-|.|++||++++.|+..-+.....|...+.+ ...-+
T Consensus 234 ~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi 312 (327)
T d1utca2 234 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 312 (327)
T ss_dssp CTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEE
T ss_pred ccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceE
Confidence 11 111111 1245566777887765 55577888999999999999999888777776654433 44566
Q ss_pred EEEcCCCcEEE
Q 003106 781 WDKLDAGDIQI 791 (847)
Q Consensus 781 ~~~~~~g~i~i 791 (847)
+.....|.+..
T Consensus 313 ~~VNr~GqVl~ 323 (327)
T d1utca2 313 IGVNRKGQVLS 323 (327)
T ss_dssp EEEETTSEEEE
T ss_pred EEECCCCeEEE
Confidence 66667776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.60 E-value=0.049 Score=56.53 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred EEEEeccCCceeeEeEEee-cCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEcc-CCCCeEEEEEcCCCC
Q 003106 617 GRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMP 693 (847)
Q Consensus 617 v~vwd~~~~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~D-g~V~vwd~~~~~~~~~l~~-h~~~I~~v~fsp~~~ 693 (847)
+.+||..++ .+....... .|......+++.+|+++++.|+.+ .++.+||..+..-...-.. ....-.+++..+|++
T Consensus 54 ~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 54 TSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEECCCC-cEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 568999887 555444332 344444567788999999998765 5899999886554321111 111224566778999
Q ss_pred EEEEEeCC------CcEEEEECCCCCceEEEecc----------CC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 003106 694 RLATSSFD------KTVRVWDADNPGYSLRTFMG----------HS-----ASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (847)
Q Consensus 694 ~Lasgs~D------g~V~iWD~~~~~~~~~~~~~----------h~-----~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD 752 (847)
.++.|+.+ ..+.+||..+.. ...+.. +. ..-..+..-++|+ +++.+..++.+.++|
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~ 209 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYT 209 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEEC
T ss_pred eeeeccccccccccceeeeecCCCCc--eeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecC
Confidence 88888743 368999998732 222210 00 0011122233444 555666667777777
Q ss_pred CCCCce
Q 003106 753 INNGSC 758 (847)
Q Consensus 753 ~~~~~~ 758 (847)
..+...
T Consensus 210 ~~~~~~ 215 (387)
T d1k3ia3 210 SGSGDV 215 (387)
T ss_dssp STTCEE
T ss_pred cccCcE
Confidence 777653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.53 E-value=0.013 Score=57.64 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=70.8
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCceE
Q 003106 645 HFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSL 716 (847)
Q Consensus 645 ~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~-Dg-----~V~iWD~~~~~~~~ 716 (847)
.++|| |++||..+ ++.|.++|+.+++.. .|..+...+...+|||||+.||.... ++ .|.++++.+ +. .
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g~-~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GE-I 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TE-E
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC-Cc-e
Confidence 45788 99888765 467888899987764 56667778899999999999876542 22 366677765 33 2
Q ss_pred EEecc-------CCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCC
Q 003106 717 RTFMG-------HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNG 756 (847)
Q Consensus 717 ~~~~~-------h~~~V~sl~fsp~g~~ll~s~s~D-----g~V~iWD~~~~ 756 (847)
..+.. ....+..+.|+|+|+.++++...+ ..+.+++...+
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 132 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 132 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc
Confidence 33321 223456789999998776543322 23445555444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.51 E-value=0.079 Score=55.62 Aligned_cols=139 Identities=8% Similarity=0.029 Sum_probs=90.1
Q ss_pred CCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcC--CCCEEEEEeCCC------------------cEEEEECCCCce
Q 003106 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDK------------------KAVLWHTDTLKS 672 (847)
Q Consensus 613 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg------------------~V~vwd~~~~~~ 672 (847)
.+..|.+.|+.+.+ ...+..+ .....+..++..+ ...+++.++.+. .+.++|.++.+.
T Consensus 108 an~RVAvIdl~~fk-t~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V 185 (459)
T d1fwxa2 108 ANTRVARVRCDVMK-CDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 185 (459)
T ss_dssp TTTEEEEEETTTTE-EEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEE
T ss_pred CCceEEEEECccee-eeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceE
Confidence 45667778887652 2222233 2344566667655 455777776632 367789998888
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCC--------------------------------------CcEEEEECCCC--
Q 003106 673 KTNLEEHSSLITDVRFSPSMPRLATSSFD--------------------------------------KTVRVWDADNP-- 712 (847)
Q Consensus 673 ~~~l~~h~~~I~~v~fsp~~~~Lasgs~D--------------------------------------g~V~iWD~~~~-- 712 (847)
...+..- .....++++++|+++++.+.+ +.|.+-|.++.
T Consensus 186 ~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~ 264 (459)
T d1fwxa2 186 AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS 264 (459)
T ss_dssp EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--
T ss_pred EEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCC
Confidence 7766532 346789999999999887754 22344454431
Q ss_pred CceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 003106 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (847)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~ 755 (847)
...++.+.. ......|.++|||+++++++..+.+|.|+|++.
T Consensus 265 ~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 265 SLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred cceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 112222221 223567899999999999999999999999964
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.54 Score=46.66 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=131.4
Q ss_pred CCCceEEeeecCCCCCCCCcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 003106 597 LDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL 676 (847)
Q Consensus 597 ~d~~v~~~~s~d~t~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l 676 (847)
.|+.+|+-...+ ....+.+.|+...... ..+.+ .--+.-.+|..+.||.-+ ..++.|||+++.+.++.+
T Consensus 31 SDkyicVRe~~~----~~~~VvIidl~n~~~~-~Rrpi-----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~ 99 (327)
T d1utca2 31 SDKFICIREKVG----EQAQVVIIDMNDPSNP-IRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH 99 (327)
T ss_dssp SSSEEEEEEEET----TEEEEEEEETTSTTSC-EEEEC-----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEeccC----CCceEEEEECCCCCcc-eeccc-----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE
Confidence 455555543221 2356778888765221 11111 112344568888887766 458999999999888887
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC----CCeEEEEEecCCCeEEEEEe--C----CC
Q 003106 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS----ASVMSLDFHPNKDDLICSCD--G----DG 746 (847)
Q Consensus 677 ~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~----~~V~sl~fsp~g~~ll~s~s--~----Dg 746 (847)
.-.+ .|.--.|-.+. .|+..+ +..|+-|+++....+.+.|..|. ..|..-..+++.++++++|= . .|
T Consensus 100 ~~~e-~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 100 TMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp ECSS-CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EcCC-CcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence 6444 56666776443 555554 57799999976566788887664 45777788899998877652 2 36
Q ss_pred cEEEEECCCCceEEEEeeCCceEEEEEecCCC---EEE----EEcCCCcEEEEcCCcccc--eee------ecccccCCC
Q 003106 747 EIRYWSINNGSCTRVFKVESFCCWCVNAMNRP---CLW----DKLDAGDIQISDSLFINA--NIF------CGLGWYGSD 811 (847)
Q Consensus 747 ~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~----~~~~~g~i~i~d~~~~~~--~~~------~~~~~~~~~ 811 (847)
.+.+|.++.+ .-..+++|..+-..+...+.. .++ .+...+.+.+.+...... ..+ ..+......
T Consensus 177 ~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~ 255 (327)
T d1utca2 177 AMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 255 (327)
T ss_dssp EEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTT
T ss_pred EEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccC
Confidence 7788888754 334455554433333222111 121 223345677776432111 111 000000111
Q ss_pred CccccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 812 EIPAPSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 812 ~~~~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+.. +. ....-++++.-+.-|.|.+||+.|
T Consensus 256 DFPva---mq-vs~kygiiyviTK~G~i~lyDleT 286 (327)
T d1utca2 256 DFPVA---MQ-ISEKHDVVFLITKYGYIHLYDLET 286 (327)
T ss_dssp CCEEE---EE-EETTTTEEEEEETTSEEEEEETTT
T ss_pred CcEEE---EE-eeccCCEEEEEecCcEEEEEEccc
Confidence 11110 00 122457788889999999999876
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.22 E-value=0.65 Score=51.04 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=35.1
Q ss_pred CcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 746 GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 746 g~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
|.|.-||+.+++.+-.++................|+.+..++.++.+|.....
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe 509 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence 35777888888877666654332222222345677889999999999976543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.17 E-value=0.92 Score=49.60 Aligned_cols=188 Identities=12% Similarity=0.022 Sum_probs=107.3
Q ss_pred CCCCCCcEEEEeccCCceeeEeEEeecCC---------------------------CCEE-EEEEcCCCCEEEEEeC---
Q 003106 610 TDPRDAGGRGMDVSQGFSFKEANSVRAST---------------------------SKVI-CCHFSSDGKLLATGGH--- 658 (847)
Q Consensus 610 t~~~d~~v~vwd~~~~~~~~~~~~l~~h~---------------------------~~V~-~l~fspdg~~Lasgs~--- 658 (847)
.....+.|+.+|+.+++..-...++.... ..|. .+.+.+...+++.+..
T Consensus 173 ~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~ 252 (560)
T d1kv9a2 173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (560)
T ss_dssp TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred eccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCc
Confidence 44456789999999985433333322111 1111 3456666666655421
Q ss_pred ----------------CCcEEEEECCCCceeEEEccCCCCeE---------EEEEcCCCC---EEEEEeCCCcEEEEECC
Q 003106 659 ----------------DKKAVLWHTDTLKSKTNLEEHSSLIT---------DVRFSPSMP---RLATSSFDKTVRVWDAD 710 (847)
Q Consensus 659 ----------------Dg~V~vwd~~~~~~~~~l~~h~~~I~---------~v~fsp~~~---~Lasgs~Dg~V~iWD~~ 710 (847)
...|...|+++++.+..+......++ -+.+..+++ .++.+..+|.+.++|.+
T Consensus 253 ~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~ 332 (560)
T d1kv9a2 253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT 332 (560)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecC
Confidence 23577779999998877653222221 122222332 56778889999999999
Q ss_pred CCCceEEEec-cCCCC-----------------------------------eEEEEEecCCCeEEEEEeC----------
Q 003106 711 NPGYSLRTFM-GHSAS-----------------------------------VMSLDFHPNKDDLICSCDG---------- 744 (847)
Q Consensus 711 ~~~~~~~~~~-~h~~~-----------------------------------V~sl~fsp~g~~ll~s~s~---------- 744 (847)
+ ++.+.... ..... -...+++|+...+++....
T Consensus 333 t-G~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~ 411 (560)
T d1kv9a2 333 N-GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK 411 (560)
T ss_dssp T-CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred C-CcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccc
Confidence 8 55443221 11000 0134566766544432211
Q ss_pred -------------------------CCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 745 -------------------------DGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 745 -------------------------Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
.|.|.-||+.+++.+-.+.................++.+..+|.++.+|.....
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence 256888999999888776654333222222345677788999999999977433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.13 E-value=0.18 Score=51.97 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=111.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcC------CCCEEEEEe-C-C--CcEEEEECCCCCceEE
Q 003106 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP------SMPRLATSS-F-D--KTVRVWDADNPGYSLR 717 (847)
Q Consensus 648 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp------~~~~Lasgs-~-D--g~V~iWD~~~~~~~~~ 717 (847)
|+..+|+....++-|++||++ |+.+..+. .+.++.|+.-. ....|+.++ . + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 355677777777779999986 77777664 34566665442 222345554 2 2 3688898864344444
Q ss_pred EeccC-------CCCeEEEEE--ecC-CCeEEEEEeCCCcEEEEECC---CC----ceEEEEeeCCceEEEEEecCCCEE
Q 003106 718 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSIN---NG----SCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 718 ~~~~h-------~~~V~sl~f--sp~-g~~ll~s~s~Dg~V~iWD~~---~~----~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.+... ...|+.+|+ ++. +..+++....+|.+..|.+. .+ +.++.|......--|+.-+....|
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 44321 124777777 554 44455566778999888763 23 355667666666667776677888
Q ss_pred EEEcCCCcEEEEcCCcc---cceee-ecccccCCCCcc-ccccccccccCCCcEEEEEeCCCeEEEEEccC
Q 003106 781 WDKLDAGDIQISDSLFI---NANIF-CGLGWYGSDEIP-APSWKVSCRSCRECCLYTGCGDSSLSSFIAGT 846 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~~---~~~~~-~~~~~~~~~~~~-~~~w~~~~~~~~~~~l~sGs~DG~V~vW~~gt 846 (847)
+.+.++..+..++.... ...++ ...+..-..++. ..+|. +....+-+|+|.-+|.+..||+..+
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~--~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYY--AADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEE--CGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEE--cCCCCeEEEEEcCCCCeEEEEecCC
Confidence 88888777766653321 11112 111111111211 11222 1111234566666889999998743
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.82 E-value=0.19 Score=52.60 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=81.6
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeCCC---------------cE-----------------
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KA----------------- 662 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---------------~V----------------- 662 (847)
+.+.++|..+. +....+.- .+....+++++||+++++.+.+. .|
T Consensus 173 ~~~t~ID~~tm---~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 173 NVFTAVDADKW---EVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp EEEEEEETTTT---EEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred eEEEEEecCCc---eEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 34556777765 33333221 23466899999999999887541 13
Q ss_pred ------EEEECCC---CceeEEEccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC----------CceEEEeccC
Q 003106 663 ------VLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNP----------GYSLRTFMGH 722 (847)
Q Consensus 663 ------~vwd~~~---~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~----------~~~~~~~~~h 722 (847)
.+-|.++ ...++.+... .....|.++|||+++++++ .+.+|.|+|++.- ..++..-...
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred EEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 3333331 1122222222 2245789999999987665 6999999999741 1112111223
Q ss_pred CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 003106 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (847)
Q Consensus 723 ~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~ 754 (847)
.-......|+..| +...|.--|..|.-|++.
T Consensus 328 glgPLht~fd~~g-~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 328 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred CcCccccccCCCc-eEEEEeeccceEEEEecc
Confidence 3445677898886 455577789999999984
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.66 E-value=0.087 Score=54.50 Aligned_cols=116 Identities=9% Similarity=0.024 Sum_probs=74.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCceeE--EE-ccCCCCeEEEEEcCCCCEEEEEeCC-CcE
Q 003106 640 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSKT--NL-EEHSSLITDVRFSPSMPRLATSSFD-KTV 704 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg-----------~V~vwd~~~~~~~~--~l-~~h~~~I~~v~fsp~~~~Lasgs~D-g~V 704 (847)
.+...+...+|++++.|+.+. .+.+||..+++... .. ..|......+++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 444555566899999888531 37799998765332 22 2344445567889999998888755 579
Q ss_pred EEEECCCCCceEEEec--cCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCce
Q 003106 705 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 758 (847)
Q Consensus 705 ~iWD~~~~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~s~s~D------g~V~iWD~~~~~~ 758 (847)
.+||..+. .- .... .....-.+++..++|+ +++.++.+ ..+.+||..+.+-
T Consensus 101 ~~yd~~~~-~w-~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 101 SLYDSSSD-SW-IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEEGGGT-EE-EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eEecCccC-cc-cccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCce
Confidence 99999872 22 2221 1122234567778877 44455532 3689999988754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.27 E-value=1.5 Score=48.14 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=46.2
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEcc--CC-------CCeEEEEE-cCCCC---
Q 003106 643 CCHFSSDGKLLATGGHD----------------KKAVLWHTDTLKSKTNLEE--HS-------SLITDVRF-SPSMP--- 693 (847)
Q Consensus 643 ~l~fspdg~~Lasgs~D----------------g~V~vwd~~~~~~~~~l~~--h~-------~~I~~v~f-sp~~~--- 693 (847)
.+.+.+...+++.+..+ ..|...|+++++.+..+.. |. ..+..+.. ..+++
T Consensus 245 ~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~ 324 (596)
T d1w6sa_ 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (596)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeecccccccccc
Confidence 34556666666665432 3477889999999887653 21 11222222 23443
Q ss_pred EEEEEeCCCcEEEEECCCCCceE
Q 003106 694 RLATSSFDKTVRVWDADNPGYSL 716 (847)
Q Consensus 694 ~Lasgs~Dg~V~iWD~~~~~~~~ 716 (847)
.++....+|.+.++|.++ ++.+
T Consensus 325 ~v~~~~k~G~~~vlDr~t-G~~i 346 (596)
T d1w6sa_ 325 LLTHPDRNGIVYTLDRTD-GALV 346 (596)
T ss_dssp EEEEECTTSEEEEEETTT-CCEE
T ss_pred ceeccccccceeeecCCC-Ccee
Confidence 577788999999999988 5544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.14 E-value=3 Score=45.43 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=87.0
Q ss_pred EEEcCCCCEEEEEeC----------------CCcEEEEECCCCceeEEEccCCCCe---------EEEEEcCCCC---EE
Q 003106 644 CHFSSDGKLLATGGH----------------DKKAVLWHTDTLKSKTNLEEHSSLI---------TDVRFSPSMP---RL 695 (847)
Q Consensus 644 l~fspdg~~Lasgs~----------------Dg~V~vwd~~~~~~~~~l~~h~~~I---------~~v~fsp~~~---~L 695 (847)
.++.++..+++.+.. ...|...|+++++.+..+..+...+ ..+.+..+++ .+
T Consensus 240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v 319 (571)
T d2ad6a1 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccce
Confidence 456666666666544 2457788999999988776432211 1122222343 45
Q ss_pred EEEeCCCcEEEEECCCCCceEEEeccC-------------------------------------CCCe--EEEEEecCCC
Q 003106 696 ATSSFDKTVRVWDADNPGYSLRTFMGH-------------------------------------SASV--MSLDFHPNKD 736 (847)
Q Consensus 696 asgs~Dg~V~iWD~~~~~~~~~~~~~h-------------------------------------~~~V--~sl~fsp~g~ 736 (847)
+.++.+|.+.++|.++ ++.+...+.. .+.. ...+|+|+..
T Consensus 320 ~~~~k~G~l~vlDr~t-G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~ 398 (571)
T d2ad6a1 320 SHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred eeccccceEEEEecCC-CcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCc
Confidence 7788899999999988 4443221100 0000 1245666655
Q ss_pred eEEEEEe------------------------------------CCCcEEEEECCCCceEEEEeeCCceEEEEEecCCCEE
Q 003106 737 DLICSCD------------------------------------GDGEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCL 780 (847)
Q Consensus 737 ~ll~s~s------------------------------------~Dg~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l 780 (847)
.+++-.. ..|.|..+|+++|+.+-.+.................+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglV 478 (571)
T d2ad6a1 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV 478 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred eEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEE
Confidence 3332111 1146778888888877665543322211122345567
Q ss_pred EEEcCCCcEEEEcCCc
Q 003106 781 WDKLDAGDIQISDSLF 796 (847)
Q Consensus 781 ~~~~~~g~i~i~d~~~ 796 (847)
+.+..++.++.+|...
T Consensus 479 f~G~~dg~l~A~Da~t 494 (571)
T d2ad6a1 479 WYATLDGYLKALDNKD 494 (571)
T ss_dssp EEECTTSEEEEEETTT
T ss_pred EEECCCCeEEEEECCC
Confidence 7888999999998764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.00 E-value=1.1 Score=47.12 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=71.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CC----CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCC----------
Q 003106 637 STSKVICCHFSSDGKLLATGG-HD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---------- 701 (847)
Q Consensus 637 h~~~V~~l~fspdg~~Lasgs-~D----g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~D---------- 701 (847)
+.-.+..++++||+++||.+- .+ ..|+++|+.+++.+...... .....++|.+|++.|+-...|
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 333455678899999988542 22 36999999999876532111 112568899999987655432
Q ss_pred ------CcEEEEECCCCCc-eEEEeccC--CCCeEEEEEecCCCeEEEEEeC--CCcEEEE
Q 003106 702 ------KTVRVWDADNPGY-SLRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGEIRYW 751 (847)
Q Consensus 702 ------g~V~iWD~~~~~~-~~~~~~~h--~~~V~sl~fsp~g~~ll~s~s~--Dg~V~iW 751 (847)
..|.+|.+.+... .+..+... ...+..+..+.++++++++... +....+|
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~ 262 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence 2588888876322 23344433 3356678889999987765542 3344444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.70 E-value=2.6 Score=42.60 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=78.8
Q ss_pred CCCcEEEEeccCC-ceeeEeEEeecC-CCCEEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeEE
Q 003106 613 RDAGGRGMDVSQG-FSFKEANSVRAS-TSKVICCHFSSDGKLLATGGH---------------DKKAVLWHTDTLKSKTN 675 (847)
Q Consensus 613 ~d~~v~vwd~~~~-~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~---------------Dg~V~vwd~~~~~~~~~ 675 (847)
...+|.++++... ..+..+.++... ....++|++..++.+++|-.. -++..||..+.++.. .
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~ 200 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-V 200 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-E
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-E
Confidence 4557788887543 245555555432 356889999999998888321 124455555544433 2
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceEE-EeccCCCCeEEEEEecCCCeEEEEE
Q 003106 676 LEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 676 l~~h~~~I~~v~fsp~~~~Lasgs-~Dg~V~iWD~~~~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
+...-...+.|+++|++++|+.+. ..++|++|++...+.... ....-...+-.|.+.+.+..+++++
T Consensus 201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 223345679999999998876654 688899999976332221 1112334566788876544455444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.73 E-value=3.1 Score=41.96 Aligned_cols=137 Identities=10% Similarity=0.003 Sum_probs=80.7
Q ss_pred cCCCC-EEEEEeC---CCcEEEEECCCCc--e--eEEEcc-CCCCeEEEEEcCCCCEEEEEe--C-C------------C
Q 003106 647 SSDGK-LLATGGH---DKKAVLWHTDTLK--S--KTNLEE-HSSLITDVRFSPSMPRLATSS--F-D------------K 702 (847)
Q Consensus 647 spdg~-~Lasgs~---Dg~V~vwd~~~~~--~--~~~l~~-h~~~I~~v~fsp~~~~Lasgs--~-D------------g 702 (847)
..||+ +|++... ..+|-||++.... . +.++.. .....++|++..++..++|-. . + +
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 45666 4555543 4578888876332 2 222322 224578999998888777731 1 1 2
Q ss_pred cEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCceEEEEe--eCCceEEEEEec-CCCE
Q 003106 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--VESFCCWCVNAM-NRPC 779 (847)
Q Consensus 703 ~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~--~~~~~v~~~~~~-~~~~ 779 (847)
+..+|..+. +.. ......-...+.|+++|+++.++++-+..+.|++|++.....+.... .-......+..+ .+..
T Consensus 187 ~g~v~~~~~-~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 187 WSFVTYYSP-NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp CEEEEEECS-SCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred ceeEEEEcC-Cce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence 344555443 222 33323345689999999999898888889999999997543222211 123334455554 3556
Q ss_pred EEEEcC
Q 003106 780 LWDKLD 785 (847)
Q Consensus 780 l~~~~~ 785 (847)
+|.+..
T Consensus 265 lwva~~ 270 (340)
T d1v04a_ 265 LWVGCH 270 (340)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 776643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.69 E-value=0.74 Score=50.40 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCC-CCe-----------------------------------EEEEEcCCCCE
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLI-----------------------------------TDVRFSPSMPR 694 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~I-----------------------------------~~v~fsp~~~~ 694 (847)
+.++.++.+|.+.++|.++++++.....-. ... ...+++|+...
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 367778899999999999998876542110 000 13456666666
Q ss_pred EEEEeC------------------------------------CCcEEEEECCCCCceEEEeccCCCCeEEEEEecCCCeE
Q 003106 695 LATSSF------------------------------------DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 738 (847)
Q Consensus 695 Lasgs~------------------------------------Dg~V~iWD~~~~~~~~~~~~~h~~~V~sl~fsp~g~~l 738 (847)
++.... .|.|.-||+.+ ++.+-.+.. ...+.+-.+.-.+. |
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~t-Gk~~W~~~~-~~~~~gg~l~Tagg-l 471 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPY-PTHWNGGTLSTAGN-L 471 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEE-SSSCCCCEEEETTT-E
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCC-CeEeeeccC-CCCCCCceeEECCC-E
Confidence 654432 24577788887 555444321 11111111222344 5
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 739 ICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 739 l~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
++.++.||.|+.+|.++|+.+-.++...
T Consensus 472 VF~G~~dg~l~A~Da~tGe~LW~~~l~~ 499 (560)
T d1kv9a2 472 VFQGTAAGQMHAYSADKGEALWQFEAQS 499 (560)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEECCCCcEEEEECCCCcEeEEEECCC
Confidence 6689999999999999999998887653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.52 E-value=5 Score=41.54 Aligned_cols=214 Identities=11% Similarity=0.029 Sum_probs=107.7
Q ss_pred ceEEEecCCCeEeec----CCC----eEEeCCCCchhhccccccccC----CCCCceEEeeecCC----------CCCCC
Q 003106 557 PLMMFGTDGAGTLTS----PSN----QLWDDKDLELRADMDRLVEDG----SLDDNVESFLSHDD----------TDPRD 614 (847)
Q Consensus 557 ~~v~~s~dG~~~~~~----~~~----~iWD~~~~~~~~~~~~~~~~g----~~d~~v~~~~s~d~----------t~~~d 614 (847)
..+++||||++++.+ |++ ++.|+.+++...........+ ..|+....+...+. ...+.
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~ 207 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence 356789999988653 333 789999998765321111101 01122222222111 12233
Q ss_pred CcEEEEeccCCceeeEeEEeecC--CCCEEEEEEcCCCCEEEEEeC---CCcEEEE--ECCCCc--------eeEEEccC
Q 003106 615 AGGRGMDVSQGFSFKEANSVRAS--TSKVICCHFSSDGKLLATGGH---DKKAVLW--HTDTLK--------SKTNLEEH 679 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~---Dg~V~vw--d~~~~~--------~~~~l~~h 679 (847)
..|.++.+.+.. ...+..+... ...+..+..+.|+++|+.... +....+| |+.... .+..+...
T Consensus 208 ~~v~~h~lgt~~-~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 286 (430)
T d1qfma1 208 QKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (430)
T ss_dssp CEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred ceEEEEECCCCc-cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence 456667776652 2222333333 345777888999998765432 3344455 433211 12223222
Q ss_pred CCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCce-EEEe-ccCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEE
Q 003106 680 SSLITDVRFSPSMPRLATSS---FDKTVRVWDADNPGYS-LRTF-MGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWS 752 (847)
Q Consensus 680 ~~~I~~v~fsp~~~~Lasgs---~Dg~V~iWD~~~~~~~-~~~~-~~h~~~V~sl~fsp~g~~ll~s~s~Dg--~V~iWD 752 (847)
...+.-+. +.++.+++... .++.|...++..+... ...+ ..+...+..-.+...+.++++..-.|+ .|++++
T Consensus 287 ~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~ 365 (430)
T d1qfma1 287 EGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (430)
T ss_dssp SSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence 33333332 22233333333 2466777777764322 2333 334455654455555556666655554 588899
Q ss_pred CCCCceEEEEeeCCceEEEE
Q 003106 753 INNGSCTRVFKVESFCCWCV 772 (847)
Q Consensus 753 ~~~~~~~~~~~~~~~~v~~~ 772 (847)
+.++.....+......+..+
T Consensus 366 ~~~~~~~~~~~~~~~sv~~~ 385 (430)
T d1qfma1 366 LATGALLKIFPLEVGSVVGY 385 (430)
T ss_dssp TTTCCEEEEECCCSSEEEEE
T ss_pred CCCCcEEEecCCCCceEeec
Confidence 99887666554444444433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.48 E-value=1.6 Score=47.69 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEccCCCC-----------------------------------eEEEEEcCCCCEE
Q 003106 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----------------------------------ITDVRFSPSMPRL 695 (847)
Q Consensus 651 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-----------------------------------I~~v~fsp~~~~L 695 (847)
..++.++.+|.+.+||.++++.+......... -..++|+|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 46778889999999999999987654321100 0124577776666
Q ss_pred EEEeCCC-------------------------------------------cEEEEECCCCCceEEEeccCCCCeEEEEEe
Q 003106 696 ATSSFDK-------------------------------------------TVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (847)
Q Consensus 696 asgs~Dg-------------------------------------------~V~iWD~~~~~~~~~~~~~h~~~V~sl~fs 732 (847)
+....+. .|.-||+.+ ++.+-.+.... ...+=...
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~t-Gk~~W~~~~~~-p~~gg~ls 485 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVS-PWNGGTLT 485 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESS-SCCCCEEE
T ss_pred EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCC-CceEeeecCCC-CCCCceEE
Confidence 6543332 355566665 44443332211 11110112
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 733 p~g~~ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
-.+. +|++++.||.++.||.++|+.+-.+....
T Consensus 486 tagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 486 TAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (573)
T ss_dssp ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EcCC-EEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence 2344 55588999999999999999998887653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.46 E-value=6.5 Score=42.60 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=36.6
Q ss_pred CcEEEEECCCCceEEEEeeCCceEEEEEecCCCEEEEEcCCCcEEEEcCCccc
Q 003106 746 GEIRYWSINNGSCTRVFKVESFCCWCVNAMNRPCLWDKLDAGDIQISDSLFIN 798 (847)
Q Consensus 746 g~V~iWD~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 798 (847)
|.|.-+|+.+|+++-.+..+..............|+.+..+|.++.+|.....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe 518 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence 56888899999888777655433222222445677889999999999977443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.70 E-value=2.6 Score=45.90 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeeCC
Q 003106 738 LICSCDGDGEIRYWSINNGSCTRVFKVES 766 (847)
Q Consensus 738 ll~s~s~Dg~V~iWD~~~~~~~~~~~~~~ 766 (847)
++++++.||.++.+|.++|+.+-.++...
T Consensus 477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~ 505 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence 56689999999999999999998887553
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.55 Score=45.76 Aligned_cols=135 Identities=11% Similarity=0.046 Sum_probs=63.8
Q ss_pred CcEEEEeccCCceeeEeEEeecCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceeEE--EccCCCCe
Q 003106 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTN--LEEHSSLI 683 (847)
Q Consensus 615 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---------Dg~V~vwd~~~~~~~~~--l~~h~~~I 683 (847)
..+.+||+.++ .+..+..+......-..+.+ ++++++.|+. -..|.+||..+.+.... +..-...-
T Consensus 19 ~~~~~yd~~t~-~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCC-eEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 45788999887 67666555433322222332 5666666653 13577888775443321 11111111
Q ss_pred EEEEEcCCCCEEEEEeCCCc-----EEEEECCCCCceEEEeccCCC--CeEEEEEecCCCeEEEEEeCC-----CcEEEE
Q 003106 684 TDVRFSPSMPRLATSSFDKT-----VRVWDADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGD-----GEIRYW 751 (847)
Q Consensus 684 ~~v~fsp~~~~Lasgs~Dg~-----V~iWD~~~~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~s~s~D-----g~V~iW 751 (847)
.++.+ +++.++.++.++. +..||..+. . ......... .-.++.... ..+++.|+.+ ..+.+|
T Consensus 96 ~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~r~~~~~~~~~--~~~~~~GG~~~~~~~~~~~~~ 169 (288)
T d1zgka1 96 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD-E-WHLVAPMLTRRIGVGVAVLN--RLLYAVGGFDGTNRLNSAECY 169 (288)
T ss_dssp EEEEE--TTEEEEECCEETTEECCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEET--TEEEEECCBCSSCBCCCEEEE
T ss_pred ecccc--ceeeEEecceecccccceeeeeccccC-c-cccccccccccccceeeeee--ecceEecCcccccccceEEEe
Confidence 22222 4555555543333 445666652 1 222211111 111222232 2355555543 457888
Q ss_pred ECCCCce
Q 003106 752 SINNGSC 758 (847)
Q Consensus 752 D~~~~~~ 758 (847)
|..+.+.
T Consensus 170 d~~~~~~ 176 (288)
T d1zgka1 170 YPERNEW 176 (288)
T ss_dssp ETTTTEE
T ss_pred ecccccc
Confidence 8877653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.75 E-value=4.2 Score=42.71 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--Ec------cCCCCeEEEEEcCC
Q 003106 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LE------EHSSLITDVRFSPS 691 (847)
Q Consensus 638 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~------~h~~~I~~v~fsp~ 691 (847)
-...++|+|.|||++|++--.+|+|++++..+++.... +. .-......|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45678999999999888865579999999877654322 21 12356789999996
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.40 E-value=6.2 Score=42.97 Aligned_cols=111 Identities=13% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCCceeEEEccCC----------CCe-EEEEEcCC----CCEEEEEeCCCcEEEEECCCC
Q 003106 649 DGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHS----------SLI-TDVRFSPS----MPRLATSSFDKTVRVWDADNP 712 (847)
Q Consensus 649 dg~~Lasgs~Dg~V~vwd~-~~~~~~~~l~~h~----------~~I-~~v~fsp~----~~~Lasgs~Dg~V~iWD~~~~ 712 (847)
+|.++++++.++.|...|. ++++.+..+.... ..+ ..|++.++ ..+|+.++.|+.|.-.|.++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t- 140 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET- 140 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc-
Confidence 5555555566778888887 5788888764211 111 23455433 34688899999999999999
Q ss_pred CceEEEeccC---C-CCeE-EEEEecCCCeEEEEEeC------CCcEEEEECCCCceEEEEe
Q 003106 713 GYSLRTFMGH---S-ASVM-SLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK 763 (847)
Q Consensus 713 ~~~~~~~~~h---~-~~V~-sl~fsp~g~~ll~s~s~------Dg~V~iWD~~~~~~~~~~~ 763 (847)
++.+..+... . ..++ .-.+. + ..++ .+.. .|.|+-+|+++|+.+-.+.
T Consensus 141 G~~~w~~~~~d~~~~~~~t~~P~v~-~-~~vi-vg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 141 GETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CceeccccccccccccccccCCcEE-C-CeEE-EeeccccccccCceEEEECCCCcEEEEee
Confidence 6665555321 1 1111 11122 2 2233 4332 4899999999999887765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.32 E-value=11 Score=38.29 Aligned_cols=96 Identities=8% Similarity=0.042 Sum_probs=63.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe
Q 003106 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (847)
Q Consensus 640 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~ 719 (847)
.|..++|+.| .|+.. .++.+.++++...........-...+..+.++|. .++....++.+.++++.+ +......
T Consensus 88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~-~~~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT-KSTKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEecc-Ccccccc
Confidence 5888999755 45554 4567888888765555555445567888888875 577777899999999987 3322211
Q ss_pred c-----cCCCCeEEEEEecCCCeEEEEE
Q 003106 720 M-----GHSASVMSLDFHPNKDDLICSC 742 (847)
Q Consensus 720 ~-----~h~~~V~sl~fsp~g~~ll~s~ 742 (847)
. .-.+.+.+++|++.|..++ ++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v-~~ 188 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSF-AW 188 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEE-EE
T ss_pred CCcceEEecCCceEEEEeCCcEEEE-Ee
Confidence 1 1135577777776665443 44
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.75 E-value=1.3 Score=48.49 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=53.8
Q ss_pred CcEEEEECCCCceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEeccCC-CCeEEEEEecCCCeE
Q 003106 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDL 738 (847)
Q Consensus 660 g~V~vwd~~~~~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~~~h~-~~V~sl~fsp~g~~l 738 (847)
|.|.-+|+.+++.+..+..+.. +..-.++..+.++++|+.||.++.+|.++ ++.+-.+.-.. ..-.-+.|..+|+-+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lstagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCC-CccceeEEcCCeEEEeCCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence 6788899999999888764432 22222334577888999999999999999 77777664321 111226677788755
Q ss_pred EEE
Q 003106 739 ICS 741 (847)
Q Consensus 739 l~s 741 (847)
++.
T Consensus 544 v~i 546 (582)
T d1flga_ 544 LGV 546 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.22 E-value=0.18 Score=39.20 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcCCCC
Q 003106 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (847)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (847)
++-|+.=|++||..+|+.+++.+|.+|..++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~ 37 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELD 37 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence 4568899999999999999999999998776
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=82.31 E-value=20 Score=35.87 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=81.6
Q ss_pred CEEEEEE--cC-CCC-EEEEEeCCCcEEEEECC---CC----ceeEEEccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003106 640 KVICCHF--SS-DGK-LLATGGHDKKAVLWHTD---TL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (847)
Q Consensus 640 ~V~~l~f--sp-dg~-~Lasgs~Dg~V~vwd~~---~~----~~~~~l~~h~~~I~~v~fsp~~~~Lasgs~Dg~V~iWD 708 (847)
.|..+|+ ++ ++. ++++...+|.+..|.+. .+ +.++++. -...+..|.+......|+.+-.+..|+.++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEE
Confidence 3566665 65 454 46667778999888763 22 3445554 345688999999999999998887777777
Q ss_pred CCCC----CceEEEecc--CCCCeEEEEEec--CCC-eEEEEEeCCCcEEEEECCC-CceEEEEee
Q 003106 709 ADNP----GYSLRTFMG--HSASVMSLDFHP--NKD-DLICSCDGDGEIRYWSINN-GSCTRVFKV 764 (847)
Q Consensus 709 ~~~~----~~~~~~~~~--h~~~V~sl~fsp--~g~-~ll~s~s~Dg~V~iWD~~~-~~~~~~~~~ 764 (847)
++-. ...+....+ ....+..|+.-. ++. +||+|.-.+++..|||..+ .+.+..|..
T Consensus 208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp SSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred eccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 6521 122222222 356777777543 333 6777776789999999987 467767764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.12 E-value=19 Score=33.18 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceEEEe---cc-------CCCCeEEEEEecCCCeEEEEEeC-CCcEEE
Q 003106 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF---MG-------HSASVMSLDFHPNKDDLICSCDG-DGEIRY 750 (847)
Q Consensus 682 ~I~~v~fsp~~~~Lasgs~Dg~V~iWD~~~~~~~~~~~---~~-------h~~~V~sl~fsp~g~~ll~s~s~-Dg~V~i 750 (847)
.|.++++. +.+.+++|+....+.+|-++. +. ++.+ .+ ....|..+.|-.-+..-|+++.. .|.++|
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYvieg-Gk-lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDG-GG-LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEET-TE-EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeC-Cc-eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 46777765 455778888888888888876 33 2222 11 13345555554433333445555 788888
Q ss_pred EECCCCceEEEEeeCCceE
Q 003106 751 WSINNGSCTRVFKVESFCC 769 (847)
Q Consensus 751 WD~~~~~~~~~~~~~~~~v 769 (847)
++...|.....+......|
T Consensus 182 ~tpkeGS~~~ay~~~gnKV 200 (313)
T d2hu7a1 182 FDSGEGSFSSASISPGMKV 200 (313)
T ss_dssp ECCSSEEEEEEEECTTSCE
T ss_pred ecCCCCcccceeEccCcee
Confidence 8887776555554444444
|